Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 236 of 444
Found at i:66770416 original size:22 final size:22
Alignment explanation
Indices: 66770342--66770416 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
66770332 GTTCACATTC
66770342 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
66770364 ATCACACATACGCAAGTTC-ACATT
1 AT--CACATTGGCCA-TTCGGCCTT
66770388 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
66770411 ATCACA
1 ATCACA
66770417 CATATATATA
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.29
23 11 0.29
24 11 0.29
25 5 0.13
ACGTcount: A:0.27, C:0.32, G:0.13, T:0.28
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:66770473 original size:31 final size:31
Alignment explanation
Indices: 66770432--66770499 Score: 118
Period size: 31 Copynumber: 2.2 Consensus size: 31
66770422 ATATACGGGT
* *
66770432 TCACATTCATCACATTGGCCATTCGGCCTTA
1 TCACACTCATCACATTGGCCATTCGACCTTA
66770463 TCACACTCATCACATTGGCCATTCGACCTTA
1 TCACACTCATCACATTGGCCATTCGACCTTA
66770494 TCACAC
1 TCACAC
66770500 ATATATATAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.25, C:0.35, G:0.10, T:0.29
Consensus pattern (31 bp):
TCACACTCATCACATTGGCCATTCGACCTTA
Found at i:66770495 original size:180 final size:179
Alignment explanation
Indices: 66769916--66770622 Score: 915
Period size: 191 Copynumber: 3.8 Consensus size: 179
66769906 ACACATTTCG
* * *
66769916 CATTAGCCATTCGGCC-T-T-AC-CACATATATACATGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
* * * *
66769977 CCTTATCTCATATATGCATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACACATATGCA
66 CCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCA
66770042 TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACAGCATGTTCACATTCATCA
131 TGTTCACATTCATCACATTGGCCATTCGGCCTTAT-----A-CA---TCACA-TCATCA
66770101 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTC
1 CATTGGCCATTCGGCCTTATCACGC--ATATATATACAGGTTCACATTCATCACATTGGCCATTC
* * * * * *
66770166 GGCCTTATCTCATATATGCATGTTCACTTTCATCACATTGGCCATTCAGCCTTATCACACATACG
64 GGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATG
66770231 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
129 CATGTTCACATTCATCACATTGGCCATTCGGCC-T-T-----ATA--CA---TCACA-TCATCA
*
66770295 CATTGGCCATTCGGCCTTATCACGCATATATATACATGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
* **
66770360 CCTTATCACACATACGCAAGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATA
66 CCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCA
66770425 TACGGGTTCACATTCATCACATTGGCCATTCGGCCTTAT-CA-CAC-TCATCA
131 T----GTTCACATTCATCACATTGGCCATTCGGCCTTATACATCACATCATCA
* * *
66770475 CATTGGCCATTCGACCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
*
66770540 CCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
66 CCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCA
66770605 TGTTCACATTCATCACAT
131 TGTTCACATTCATCACAT
66770623 AAAATCCTAA
Statistics
Matches: 481, Mismatches: 23, Indels: 45
0.88 0.04 0.08
Matches are distributed among these distances:
176 17 0.04
180 129 0.27
182 3 0.01
185 15 0.03
186 3 0.01
187 1 0.00
188 2 0.00
189 3 0.01
191 132 0.27
192 97 0.20
193 2 0.00
194 44 0.09
195 1 0.00
196 30 0.06
198 2 0.00
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (179 bp):
CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
CCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCA
TGTTCACATTCATCACATTGGCCATTCGGCCTTATACATCACATCATCA
Found at i:66770568 original size:82 final size:82
Alignment explanation
Indices: 66770381--66770550 Score: 322
Period size: 82 Copynumber: 2.1 Consensus size: 82
66770371 ATACGCAAGT
* *
66770381 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACA
1 TCACACTCATCACATTGGCCATTCGACCTTATCACACATATATATACGGGTTCACATTCATCACA
66770446 TTGGCCATTCGGCCTTA
66 TTGGCCATTCGGCCTTA
66770463 TCACACTCATCACATTGGCCATTCGACCTTATCACACATATATATACGGGTTCACATTCATCACA
1 TCACACTCATCACATTGGCCATTCGACCTTATCACACATATATATACGGGTTCACATTCATCACA
66770528 TTGGCCATTCGGCCTTA
66 TTGGCCATTCGGCCTTA
66770545 TCACAC
1 TCACAC
66770551 ATACGCATGT
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 86 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (82 bp):
TCACACTCATCACATTGGCCATTCGACCTTATCACACATATATATACGGGTTCACATTCATCACA
TTGGCCATTCGGCCTTA
Found at i:66770581 original size:47 final size:47
Alignment explanation
Indices: 66770463--66770622 Score: 239
Period size: 47 Copynumber: 3.3 Consensus size: 47
66770453 TTCGGCCTTA
* * ***
66770463 TCACACTCATCACATTGGCCATTCGACCTTATCACACATATATATACGGGT
1 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT----GT
66770514 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGT
1 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGT
66770561 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGT
1 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGT
66770608 TCACATTCATCACAT
1 TCACATTCATCACAT
66770623 AAAATCCTAA
Statistics
Matches: 104, Mismatches: 5, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
47 64 0.62
51 40 0.38
ACGTcount: A:0.28, C:0.31, G:0.11, T:0.30
Consensus pattern (47 bp):
TCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGT
Found at i:66770623 original size:23 final size:23
Alignment explanation
Indices: 66770548--66770623 Score: 59
Period size: 23 Copynumber: 3.3 Consensus size: 23
66770538 GGCCTTATCA
66770548 CACATACGCATGTTCACATTCAT
1 CACATACGCATGTTCACATTCAT
** * *
66770571 CACATTGGCCA--TTCGGCCTT-AT
1 CACATACG-CATGTTC-ACATTCAT
66770593 CACACATACGCATGTTCACATTCAT
1 --CACATACGCATGTTCACATTCAT
66770618 CACATA
1 CACATA
66770624 AAATCCTAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
22 5 0.13
23 17 0.45
24 11 0.29
25 5 0.13
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.29
Consensus pattern (23 bp):
CACATACGCATGTTCACATTCAT
Found at i:66777581 original size:43 final size:42
Alignment explanation
Indices: 66777524--66777632 Score: 112
Period size: 42 Copynumber: 2.6 Consensus size: 42
66777514 AATGCCAACG
** *
66777524 TCCCAGACGTGGTCTTACATGTAATCAAACATCGATGCC-ACTA
1 TCCCAGACAAGGTCTTACATGTAATCAAACA-CGACGCCGA-TA
* * * * *
66777567 TCCTAGACAAGGTCTTACACGAAATCAAATACGACGCCGATG
1 TCCCAGACAAGGTCTTACATGTAATCAAACACGACGCCGATA
*
66777609 TCCCAGACATGGTCTTACATGTAA
1 TCCCAGACAAGGTCTTACATGTAA
66777633 AACAGAAGTC
Statistics
Matches: 53, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
42 27 0.51
43 26 0.49
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (42 bp):
TCCCAGACAAGGTCTTACATGTAATCAAACACGACGCCGATA
Found at i:66780646 original size:27 final size:27
Alignment explanation
Indices: 66780598--66780650 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
66780588 CATTCTACCA
*
66780598 TACAGGGGTATTACAGTCATTTTACAC
1 TACAAGGGTATTACAGTCATTTTACAC
* * *
66780625 TACAAGGGTATTTCTGTGATTTTACA
1 TACAAGGGTATTACAGTCATTTTACA
66780651 AACCAGGGTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (27 bp):
TACAAGGGTATTACAGTCATTTTACAC
Found at i:66780910 original size:19 final size:19
Alignment explanation
Indices: 66780875--66780912 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
66780865 GTGTGGGGCC
*
66780875 CACGAGCCCATTTGGCCCA
1 CACGAGCCCATTAGGCCCA
66780894 CACGA-CCCATCTAGGCCCA
1 CACGAGCCCAT-TAGGCCCA
66780913 ACGTGGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.24, C:0.45, G:0.18, T:0.13
Consensus pattern (19 bp):
CACGAGCCCATTAGGCCCA
Found at i:66782213 original size:2 final size:2
Alignment explanation
Indices: 66782206--66782232 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
66782196 AATGTGTTAA
66782206 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
66782233 AATTCGGCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:66782823 original size:27 final size:28
Alignment explanation
Indices: 66782766--66782835 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
66782756 AAATTTGTAC
**
66782766 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
66782794 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
66782821 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
66782836 GACTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:66784525 original size:49 final size:49
Alignment explanation
Indices: 66784468--66784565 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
66784458 GAACGCGTCG
*
66784468 AAGTCCACGATCACCAACCTTGGTTAAGCAGGTATGAAATAATCCTTTC
1 AAGTCCACGATCACCAACCTTGGTTAAACAGGTATGAAATAATCCTTTC
66784517 AAGTCCACGATCACCAACCTTGGTTAAACAGGTATGAAATAATCCTTTC
1 AAGTCCACGATCACCAACCTTGGTTAAACAGGTATGAAATAATCCTTTC
66784566 TAAACCCAGT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (49 bp):
AAGTCCACGATCACCAACCTTGGTTAAACAGGTATGAAATAATCCTTTC
Found at i:66789105 original size:30 final size:30
Alignment explanation
Indices: 66789050--66789209 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
66789040 ATAGTGAATC
66789050 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
66789079 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
66789109 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
66789138 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
66789166 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
66789196 CGCACACTTAGTGC
1 CGCACACTTAGTGC
66789210 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:66789142 original size:59 final size:57
Alignment explanation
Indices: 66789050--66789209 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
66789040 ATAGTGAATC
*
66789050 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
66789109 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
66789166 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
66789210 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:66796774 original size:143 final size:141
Alignment explanation
Indices: 66796566--66796860 Score: 563
Period size: 143 Copynumber: 2.1 Consensus size: 141
66796556 TGAGTTAAAT
*
66796566 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
66796631 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTA--TGTGT
66796696 GTGTGCATGAGTA
129 GTGTGCATGAGTA
66796709 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
66796774 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66796839 GTGCATGAGTA
131 GTGCATGAGTA
66796850 TTCGGCCATGC
1 TTCGGCCATGC
66796861 TATAGAATTT
Statistics
Matches: 151, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 29 0.19
143 122 0.81
ACGTcount: A:0.21, C:0.11, G:0.29, T:0.39
Consensus pattern (141 bp):
TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
GTGCATGAGTA
Found at i:66797535 original size:29 final size:29
Alignment explanation
Indices: 66797502--66797633 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
66797492 GTGACGAGAT
*
66797502 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
66797531 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
66797560 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
66797589 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
66797618 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
66797634 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:66799727 original size:30 final size:30
Alignment explanation
Indices: 66799672--66799831 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
66799662 ATAGTGAATC
66799672 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
66799701 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
66799731 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
66799760 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
66799788 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
66799818 CGCACACTTAGTGC
1 CGCACACTTAGTGC
66799832 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:66799764 original size:59 final size:57
Alignment explanation
Indices: 66799672--66799831 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
66799662 ATAGTGAATC
*
66799672 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
66799731 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
66799788 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
66799832 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:66801598 original size:12 final size:12
Alignment explanation
Indices: 66801583--66801641 Score: 73
Period size: 12 Copynumber: 4.9 Consensus size: 12
66801573 ATATAATTTT
*
66801583 AGATTCAGATTC
1 AGATTTAGATTC
* *
66801595 AGATTCAGATCC
1 AGATTTAGATTC
*
66801607 AGATTTAGATTT
1 AGATTTAGATTC
*
66801619 AGATTTAGATCC
1 AGATTTAGATTC
66801631 AGATTTAGATT
1 AGATTTAGATT
66801642 TACATAAATC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 40 1.00
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (12 bp):
AGATTTAGATTC
Found at i:66801642 original size:6 final size:6
Alignment explanation
Indices: 66801580--66801643 Score: 65
Period size: 6 Copynumber: 10.7 Consensus size: 6
66801570 TAGATATAAT
* * * **
66801580 TTTAGA TTCAGA TTCAGA TTCAGA TCCAGA TTTAGA TTTAGA TTTAGA
1 TTTAGA TTTAGA TTTAGA TTTAGA TTTAGA TTTAGA TTTAGA TTTAGA
**
66801628 TCCAGA TTTAGA TTTA
1 TTTAGA TTTAGA TTTA
66801644 CATAAATCCT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.41
Consensus pattern (6 bp):
TTTAGA
Found at i:66801642 original size:24 final size:24
Alignment explanation
Indices: 66801583--66801643 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
66801573 ATATAATTTT
* *
66801583 AGATTCAGATTCAGATTCAGATCC
1 AGATTTAGATTTAGATTCAGATCC
*
66801607 AGATTTAGATTTAGATTTAGATCC
1 AGATTTAGATTTAGATTCAGATCC
66801631 AGATTTAGATTTA
1 AGATTTAGATTTA
66801644 CATAAATCCT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.38
Consensus pattern (24 bp):
AGATTTAGATTTAGATTCAGATCC
Found at i:66801643 original size:18 final size:18
Alignment explanation
Indices: 66801580--66801641 Score: 79
Period size: 18 Copynumber: 3.4 Consensus size: 18
66801570 TAGATATAAT
66801580 TTTAGATTCAGATTCAGA
1 TTTAGATTCAGATTCAGA
* * *
66801598 TTCAGATCCAGATTTAGA
1 TTTAGATTCAGATTCAGA
* *
66801616 TTTAGATTTAGATCCAGA
1 TTTAGATTCAGATTCAGA
66801634 TTTAGATT
1 TTTAGATT
66801642 TACATAAATC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.40
Consensus pattern (18 bp):
TTTAGATTCAGATTCAGA
Found at i:66803803 original size:20 final size:20
Alignment explanation
Indices: 66803780--66803846 Score: 66
Period size: 20 Copynumber: 3.4 Consensus size: 20
66803770 AGGCACGATT
66803780 GTGCAATCAGAGGCACCAAA
1 GTGCAATCAGAGGCACCAAA
* *
66803800 GTGCAAAT-AGAGACACCGAA
1 GTGC-AATCAGAGGCACCAAA
* *
66803820 GTGTAA-CAGAGGCACTAAA
1 GTGCAATCAGAGGCACCAAA
*
66803839 GTGAAATC
1 GTGCAATC
66803847 TCGTACAAGT
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
19 16 0.43
20 18 0.49
21 3 0.08
ACGTcount: A:0.42, C:0.19, G:0.25, T:0.13
Consensus pattern (20 bp):
GTGCAATCAGAGGCACCAAA
Found at i:66804866 original size:14 final size:14
Alignment explanation
Indices: 66804849--66804878 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
66804839 TTACTTGTTT
66804849 TTATGTTTTAATTA
1 TTATGTTTTAATTA
*
66804863 TTATTTTTTAATTA
1 TTATGTTTTAATTA
66804877 TT
1 TT
66804879 TTACTTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (14 bp):
TTATGTTTTAATTA
Found at i:66807211 original size:40 final size:40
Alignment explanation
Indices: 66807053--66807216 Score: 206
Period size: 40 Copynumber: 4.1 Consensus size: 40
66807043 CAGATGATAA
* *
66807053 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAC-AAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
*
66807093 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* * * *
66807133 CCGGCCTAAGTCCCAAAGGCATTTGTGTGAACT-ACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTGACTATAT
* * *
66807173 CTGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
66807213 CCGG
1 CCGG
66807217 TTAAAGCCGA
Statistics
Matches: 106, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 2 0.02
40 100 0.94
41 4 0.04
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:66815128 original size:39 final size:39
Alignment explanation
Indices: 66815033--66815229 Score: 258
Period size: 39 Copynumber: 5.1 Consensus size: 39
66815023 ATGATAACCG
* * *
66815033 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGAC-AAATTCC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
66815072 GAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 G-GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
66815112 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
**
66815151 -GCTAAGTCCCGAAGGCATTTGT-CGAACTACTATATCC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* **
66815188 GGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATATCC
1 -GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
66815228 GG
1 GG
66815230 TTAAAGCCGA
Statistics
Matches: 143, Mismatches: 9, Indels: 12
0.87 0.05 0.07
Matches are distributed among these distances:
37 13 0.09
38 22 0.15
39 60 0.42
40 47 0.33
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:66815193 original size:77 final size:78
Alignment explanation
Indices: 66815030--66815228 Score: 271
Period size: 77 Copynumber: 2.6 Consensus size: 78
66815020 CGGATGATAA
* *
66815030 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAC-AAATTCCGAGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCC--GCTAAGTCCCGAAGGCATTT
**
66815094 GTGCGAGTTACTAATT
63 GTGCGAACTACTAATT
*
66815110 CC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGCTAAGTCCCGAAGGCATTTGT-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGCTAAGTCCCGAAGGCATTTGTG
66815173 CGAACTACT-ATAT
66 CGAACTACTAAT-T
* *
66815186 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATATCCG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCG
66815229 GTTAAAGCCG
Statistics
Matches: 108, Mismatches: 8, Indels: 9
0.86 0.06 0.07
Matches are distributed among these distances:
75 2 0.02
76 10 0.09
77 59 0.55
79 33 0.31
80 4 0.04
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGCTAAGTCCCGAAGGCATTTGTG
CGAACTACTAATT
Found at i:66820258 original size:14 final size:14
Alignment explanation
Indices: 66820239--66820266 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
66820229 TAACATGATG
66820239 TTTAACATTTTCAA
1 TTTAACATTTTCAA
66820253 TTTAACATTTTCAA
1 TTTAACATTTTCAA
66820267 ACAATTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.00, T:0.50
Consensus pattern (14 bp):
TTTAACATTTTCAA
Found at i:66821793 original size:27 final size:27
Alignment explanation
Indices: 66821774--66821930 Score: 242
Period size: 27 Copynumber: 5.8 Consensus size: 27
66821764 ATTACCAAAG
66821774 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
66821801 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
66821828 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * *
66821855 TACCCTCAATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
66821882 TACCCTCGATTTACAGAATTATCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
66821909 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
66821931 TAAAATACCC
Statistics
Matches: 119, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 119 1.00
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:66821821 original size:54 final size:54
Alignment explanation
Indices: 66821763--66821959 Score: 232
Period size: 54 Copynumber: 3.6 Consensus size: 54
66821753 CAATTTGTAA
*
66821763 AATTACCAAAGTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAG
1 AATTACCAAATTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAG
*** * * *
66821817 AATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTATAG
1 AATTACCAAATTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAG
* *** * *
66821871 AATTATCGTTTTACCCTCGATTTACAGAATTATCATTTTACCCTCGATTTACAA
1 AATTACCAAATTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAG
* * * * *
66821925 AATTACTAAAATACCCTTGGTTTACAAAATTACCA
1 AATTACCAAATTACCCTCGATTTACAGAATTACCA
66821960 AAATACCCCT
Statistics
Matches: 120, Mismatches: 23, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 120 1.00
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.37
Consensus pattern (54 bp):
AATTACCAAATTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAG
Found at i:66821939 original size:27 final size:27
Alignment explanation
Indices: 66821729--66822132 Score: 181
Period size: 27 Copynumber: 14.9 Consensus size: 27
66821719 AATACTTTAG
* * ** *
66821729 TTTACCAAATTACTAAAATGTCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
** *
66821756 TTTGTAAAATTACCAAAGTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* ***
66821783 TTTACAGAATTACCATTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* ****
66821810 TTTACAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * *** *
66821837 TTTATAGAATTACCATTTTACCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
* * * ****
66821864 TTTATAGAATTATCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * ***
66821891 TTTACAGAATTATCATTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * *
66821918 TTTACAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTCGA
* *
66821945 TTTACAAAATTACCAAAATACCCCTAGC
1 TTTACAAAATTACCAAAATA-CCCTCGA
*
66821973 TTGT--AAAATTACCAAAATACCACT-GG
1 TT-TACAAAATTACCAAAATACC-CTCGA
*** * *
66821999 TTTGTGAAATTACCGAAATACCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
***
66822026 TTCGTAAAATTACCAAAATACCC-CTGA
1 TTTACAAAATTACCAAAATACCCTC-GA
* * *
66822053 TTTAGAAAATTACAAAAATACCCTTGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * * *
66822080 CTTT-CTAAAAATTA-TAGAAATACCATTGG
1 -TTTAC--AAAATTACCA-AAATACCCTCGA
*
66822109 TTTACAAAATTACTAAAATACCCT
1 TTTACAAAATTACCAAAATACCCT
66822133 TGGTTTGTAG
Statistics
Matches: 310, Mismatches: 53, Indels: 28
0.79 0.14 0.07
Matches are distributed among these distances:
25 1 0.00
26 8 0.03
27 266 0.86
28 16 0.05
29 19 0.06
ACGTcount: A:0.37, C:0.22, G:0.08, T:0.33
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTCGA
Found at i:66821967 original size:81 final size:81
Alignment explanation
Indices: 66821761--66821959 Score: 254
Period size: 81 Copynumber: 2.5 Consensus size: 81
66821751 CTCAATTTGT
* *
66821761 AAAATTACCAAAGTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGT
1 AAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCAT
*
66821826 TTTACCCTCGATTTAT
66 TTTACCCTCGATTTAC
* *** * * * * *
66821842 AGAATTACCATTTTACCCTCAATTTATAGAATTATCGTTTTACCCTCGATTTACAGAATTATCAT
1 AAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCAT
66821907 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
* * * *
66821923 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCA
1 AAAATTACCAAAATACCCTCGATTTACAGAATTACCA
66821960 AAATACCCCT
Statistics
Matches: 95, Mismatches: 23, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 95 1.00
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.36
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCAT
TTTACCCTCGATTTAC
Found at i:66822135 original size:27 final size:27
Alignment explanation
Indices: 66821909--66822161 Score: 161
Period size: 27 Copynumber: 9.3 Consensus size: 27
66821899 ATTATCATTT
* * *
66821909 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
66821936 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* * * **
66821963 TACCCCTAGCTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
*** *
66821990 TACCAC-TGGTTTGTGAAATTACCGAAA
1 TACC-CTTGGTTTACAAAATTACCAAAA
*** ***
66822017 TACCCTCAATTCGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* * * *
66822044 TACCCCTGATTTAGAAAATTACAAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* *
66822071 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTG-GTTTAC--AAAATTACCA-AAA
* *
66822100 TACCATTGGTTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
** * *
66822127 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
*
66822154 CACCCTTG
1 TACCCTTG
66822162 TAGGATGAAA
Statistics
Matches: 180, Mismatches: 38, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
26 1 0.01
27 151 0.84
28 10 0.06
29 18 0.10
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACCAAAA
Found at i:66822256 original size:27 final size:27
Alignment explanation
Indices: 66822179--66822256 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
66822169 AAATGACTAA
* *
66822179 AATACCCCT-AATAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* * *
66822206 AA-AGCCTCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
66822233 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
66822257 GAATATGCCC
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
26 1 0.03
27 37 0.93
28 2 0.05
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:66823025 original size:16 final size:16
Alignment explanation
Indices: 66823004--66823034 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
66822994 CAAATATGGG
*
66823004 CATGACATTTTGCATA
1 CATGACATGTTGCATA
66823020 CATGACATGTTGCAT
1 CATGACATGTTGCAT
66823035 GGGTTGGGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:66823103 original size:25 final size:25
Alignment explanation
Indices: 66823065--66823134 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
66823055 AGGAAGTGCT
* *
66823065 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
66823090 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
66823115 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
66823135 ATTAAAGGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:66823414 original size:31 final size:31
Alignment explanation
Indices: 66823354--66823430 Score: 111
Period size: 31 Copynumber: 2.5 Consensus size: 31
66823344 CGCTTATAGT
*
66823354 AAAGGCTTCGG-CCAGTGATAAAATTTATGA
1 AAAGGCTTCGGCCCAGCGATAAAATTTATGA
* **
66823384 AAAGGCTTTGGCCCAGCGATATGATTTATGA
1 AAAGGCTTCGGCCCAGCGATAAAATTTATGA
66823415 AAAGGCTTCGGCCCAG
1 AAAGGCTTCGGCCCAG
66823431 TATATGTCGA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 10 0.24
31 31 0.76
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGCGATAAAATTTATGA
Found at i:66827164 original size:17 final size:17
Alignment explanation
Indices: 66827144--66827180 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
66827134 TTATCGTTTG
66827144 TTTATTTTTCTTATTTA
1 TTTATTTTTCTTATTTA
*
66827161 TTTATTTTTGTTATTTA
1 TTTATTTTTCTTATTTA
66827178 TTT
1 TTT
66827181 GTATCTCATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.78
Consensus pattern (17 bp):
TTTATTTTTCTTATTTA
Found at i:66829472 original size:40 final size:40
Alignment explanation
Indices: 66829370--66829553 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 40
66829360 AAATTGAATG
* * * * * *
66829370 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
66829410 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
66829450 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
66829490 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
66829530 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
66829554 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
39 3 0.03
40 114 0.96
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:66829578 original size:80 final size:80
Alignment explanation
Indices: 66829410--66829598 Score: 184
Period size: 80 Copynumber: 2.4 Consensus size: 80
66829400 GCTGGAAATT
* * *
66829410 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
***
66829475 TTCGTGCAAGTTGTT
66 TTCGTGCAAGTTACC
* * * * *
66829490 A-AATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGG
1 ATAA-CCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCT-ATATCCGGGCTAAGACCCGAAGG
* * **
66829553 CCTTGGTGCGGGTTACC
64 CATTCGTGCAAGTTACC
* * *
66829570 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
66829599 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
79 3 0.03
80 82 0.94
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (80 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCAAGTTACC
Found at i:66836558 original size:40 final size:40
Alignment explanation
Indices: 66836456--66836639 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 40
66836446 AAATTGAATG
* * * * * *
66836456 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
66836496 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
66836536 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
66836576 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
66836616 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
66836640 CTTTGTGCGG
Statistics
Matches: 119, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
39 3 0.03
40 114 0.96
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:66836664 original size:80 final size:80
Alignment explanation
Indices: 66836496--66836684 Score: 184
Period size: 80 Copynumber: 2.4 Consensus size: 80
66836486 GCTGGAAATT
* * *
66836496 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
***
66836561 TTCGTGCAAGTTGTT
66 TTCGTGCAAGTTACC
* * * * *
66836576 A-AATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGG
1 ATAA-CCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCT-ATATCCGGGCTAAGACCCGAAGG
* * **
66836639 CCTTTGTGCGGGTTACC
64 CATTCGTGCAAGTTACC
* * *
66836656 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
66836685 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
79 3 0.03
80 82 0.94
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.24
Consensus pattern (80 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCAAGTTACC
Found at i:66840117 original size:27 final size:26
Alignment explanation
Indices: 66840069--66840128 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
66840059 ACGAGGCTGC
*
66840069 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
66840096 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
66840122 CATATAT
1 CAGATAT
66840129 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:66840130 original size:2 final size:2
Alignment explanation
Indices: 66840123--66840158 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
66840113 CCACCAGAAC
66840123 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
66840159 GTGGCGAAGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:66840239 original size:27 final size:26
Alignment explanation
Indices: 66840191--66840242 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
66840181 GCGAGGCTGC
*
66840191 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
66840217 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
66840243 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:66840934 original size:27 final size:27
Alignment explanation
Indices: 66840904--66841004 Score: 139
Period size: 27 Copynumber: 3.7 Consensus size: 27
66840894 TACTCCACAA
*
66840904 GGGTATCTCGGTAATTCTACCTTACAG
1 GGGTATTTCGGTAATTCTACCTTACAG
* * * *
66840931 GGGTATTTCAGTATTTCTACCCTACAA
1 GGGTATTTCGGTAATTCTACCTTACAG
*
66840958 GGGTATTTCGATAATTCTACCTTACAG
1 GGGTATTTCGGTAATTCTACCTTACAG
*
66840985 GGGTATTTTGGTAATTCTAC
1 GGGTATTTCGGTAATTCTAC
66841005 AACTTATCCA
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGGTAATTCTACCTTACAG
Found at i:66841003 original size:54 final size:54
Alignment explanation
Indices: 66840885--66841004 Score: 170
Period size: 54 Copynumber: 2.2 Consensus size: 54
66840875 AGGGGCAAAA
* *
66840885 TGGTAATTTTACTCCACAAGGGTATCTCGGTAATTCTACCTTACAGGGGTATTT
1 TGGTAATTCTACTCCACAAGGGTATCTCGATAATTCTACCTTACAGGGGTATTT
** * *
66840939 CAGTATTTCTAC-CCTACAAGGGTATTTCGATAATTCTACCTTACAGGGGTATTT
1 TGGTAATTCTACTCC-ACAAGGGTATCTCGATAATTCTACCTTACAGGGGTATTT
66840993 TGGTAATTCTAC
1 TGGTAATTCTAC
66841005 AACTTATCCA
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 2 0.04
54 54 0.96
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (54 bp):
TGGTAATTCTACTCCACAAGGGTATCTCGATAATTCTACCTTACAGGGGTATTT
Found at i:66841193 original size:27 final size:27
Alignment explanation
Indices: 66841155--66841611 Score: 707
Period size: 27 Copynumber: 16.9 Consensus size: 27
66841145 AGCTGACGCC
*
66841155 ACCCTACAGGGGTATTTCAGTATTTCT
1 ACCCTACAGGGGTATTTCAGTAATTCT
66841182 ACCCTACAGGGGTATTTCAGTAATTCT
1 ACCCTACAGGGGTATTTCAGTAATTCT
66841209 ACCCTACAGGGGTATTTCAGTAATTCT
1 ACCCTACAGGGGTATTTCAGTAATTCT
*
66841236 ACCCTACAGGGGTATTTCAATAATTCT
1 ACCCTACAGGGGTATTTCAGTAATTCT
* *
66841263 ACCTTACAGGGGTATTTCAGTAATTTT
1 ACCCTACAGGGGTATTTCAGTAATTCT
66841290 ACCCTACAGGGGTATTTCAGTAATTCT
1 ACCCTACAGGGGTATTTCAGTAATTCT
* * *
66841317 ACCTTATAGGGGTATTCCAGTAATTCT
1 ACCCTACAGGGGTATTTCAGTAATTCT
*
66841344 ACCCTATAGGGGTATTTCAGTAATTCT
1 ACCCTACAGGGGTATTTCAGTAATTCT
* * *
66841371 ACCTTATAGGGGTATTCCAGTAATTCT
1 ACCCTACAGGGGTATTTCAGTAATTCT
*
66841398 ACCCTATAGGGGTATTTCAGTAATTCT
1 ACCCTACAGGGGTATTTCAGTAATTCT
66841425 ACCCTACAGGGGTATTTCAGTAATTCT
1 ACCCTACAGGGGTATTTCAGTAATTCT
* *
66841452 ACGCTACAGGGGTATTTCAATAATTCT
1 ACCCTACAGGGGTATTTCAGTAATTCT
* *
66841479 ACCTTACAGGGGTATTTCAGTAATTTT
1 ACCCTACAGGGGTATTTCAGTAATTCT
66841506 ACCCTACAGGGGTATTTCAGTAATTCT
1 ACCCTACAGGGGTATTTCAGTAATTCT
* * *
66841533 ACCTTATAGGGGTATTCCAGTAATTCT
1 ACCCTACAGGGGTATTTCAGTAATTCT
* *
66841560 ACCCTATAGGGGTATTTCGGTAATTCT
1 ACCCTACAGGGGTATTTCAGTAATTCT
* *
66841587 ACCTTACAGGGGTATTTCGGTAATT
1 ACCCTACAGGGGTATTTCAGTAATT
66841612 GTACAAATCA
Statistics
Matches: 397, Mismatches: 33, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 397 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
ACCCTACAGGGGTATTTCAGTAATTCT
Found at i:66841623 original size:27 final size:27
Alignment explanation
Indices: 66841567--66841720 Score: 136
Period size: 27 Copynumber: 5.7 Consensus size: 27
66841557 TCTACCCTAT
* * **
66841567 AGGGGTATTTCGGTAATTCTAC-CTTAC
1 AGGGGTATTTTGGTAATTTTACAAAT-C
* *
66841594 AGGGGTATTTCGGTAATTGTACAAATC
1 AGGGGTATTTTGGTAATTTTACAAATC
66841621 AGGGGTATTTTGGTAATTTTACAAA-C
1 AGGGGTATTTTGGTAATTTTACAAATC
* *
66841647 TAGGGGTATTTTGGTAATTTTGCTAATC
1 -AGGGGTATTTTGGTAATTTTACAAATC
* *
66841675 -GAGGGTATTTTGGTAATTTTGCTAAT-
1 AG-GGGTATTTTGGTAATTTTACAAATC
* *
66841701 TGAAGGTATTTTGGTAATTT
1 AG-GGGTATTTTGGTAATTT
66841721 AGTAAACTAA
Statistics
Matches: 114, Mismatches: 8, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
26 2 0.02
27 110 0.96
28 2 0.02
ACGTcount: A:0.25, C:0.08, G:0.25, T:0.42
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAATC
Found at i:66841652 original size:54 final size:54
Alignment explanation
Indices: 66841188--66841694 Score: 159
Period size: 54 Copynumber: 9.4 Consensus size: 54
66841178 TTCTACCCTA
** * ** * * **
66841188 CAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC-CCT
1 CAGGGGTATTTTGGTAATTTTACCAAACAGGGGTATTTCGGTAATTGTACAAAT
*** * ** * * **
66841241 ACAGGGGTATTTCAATAATTCTACCTTACAGGGGTATTTCAGTAATTTTAC-CCT
1 -CAGGGGTATTTTGGTAATTTTACCAAACAGGGGTATTTCGGTAATTGTACAAAT
** * ** * * * * **
66841295 ACAGGGGTATTTCAGTAATTCTACCTTATAGGGGTATTCCAGTAATTCTACCCTAT
1 -CAGGGGTATTTTGGTAATTTTACCAAACAGGGGTATTTCGGTAATTGTA-CAAAT
** * ** * * * * **
66841351 -AGGGGTATTTCAGTAATTCTACCTTATAGGGGTATTCCAGTAATTCTACCCTAT
1 CAGGGGTATTTTGGTAATTTTACCAAACAGGGGTATTTCGGTAATTGTA-CAAAT
** * ** * * **
66841405 -AGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC-GCT
1 CAGGGGTATTTTGGTAATTTTACCAAACAGGGGTATTTCGGTAATTGTACAAAT
*** * ** * * **
66841457 ACAGGGGTATTTCAATAATTCTACCTTACAGGGGTATTTCAGTAATTTTAC-CCT
1 -CAGGGGTATTTTGGTAATTTTACCAAACAGGGGTATTTCGGTAATTGTACAAAT
** * ** * * * * **
66841511 ACAGGGGTATTTCAGTAATTCTACCTTATAGGGGTATTCCAGTAATTCTACCCTAT
1 -CAGGGGTATTTTGGTAATTTTACCAAACAGGGGTATTTCGGTAATTGTA-CAAAT
* * **
66841567 -AGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCGGTAATTGTACAAAT
1 CAGGGGTATTTTGGTAATTTTACCAAACAGGGGTATTTCGGTAATTGTACAAAT
* * * *
66841620 CAGGGGTATTTTGGTAATTTTA-CAAACTAGGGGTATTTTGGTAATTTTGCTAAT
1 CAGGGGTATTTTGGTAATTTTACCAAAC-AGGGGTATTTCGGTAATTGTACAAAT
66841674 C-GAGGGTATTTTGGTAATTTT
1 CAG-GGGTATTTTGGTAATTTT
66841695 GCTAATTGAA
Statistics
Matches: 405, Mismatches: 39, Indels: 18
0.88 0.08 0.04
Matches are distributed among these distances:
52 1 0.00
53 8 0.02
54 392 0.97
55 2 0.00
56 2 0.00
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACCAAACAGGGGTATTTCGGTAATTGTACAAAT
Found at i:66845615 original size:13 final size:13
Alignment explanation
Indices: 66845579--66845615 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
66845569 GAAAAATGAA
*
66845579 TATATGAAAAGGT
1 TATATGAAATGGT
*
66845592 TATATGGAATGGT
1 TATATGAAATGGT
66845605 TATATGAAATG
1 TATATGAAATG
66845616 AATATTTGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.35
Consensus pattern (13 bp):
TATATGAAATGGT
Found at i:66849514 original size:40 final size:40
Alignment explanation
Indices: 66849459--66849639 Score: 276
Period size: 40 Copynumber: 4.5 Consensus size: 40
66849449 CATTTGAATG
66849459 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
66849499 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
66849539 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
66849579 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
66849619 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
66849640 AAACTTGGGT
Statistics
Matches: 130, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 117 0.90
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:66857521 original size:40 final size:40
Alignment explanation
Indices: 66857466--66857646 Score: 276
Period size: 40 Copynumber: 4.5 Consensus size: 40
66857456 CATTTGAATG
66857466 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
66857506 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
66857546 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
66857586 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
66857626 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
66857647 AAACTTGGGT
Statistics
Matches: 130, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 117 0.90
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:66859158 original size:3 final size:3
Alignment explanation
Indices: 66859150--66859191 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
66859140 GGCTGGAGAA
66859150 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
66859192 TTGGTGTTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:66859627 original size:50 final size:50
Alignment explanation
Indices: 66859567--66859667 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
66859557 CCCTTGCAAG
66859567 TAAGTGACTTTGATGGTCATTTTTGTATTTTTGGAACCCTTATAGCTTAA
1 TAAGTGACTTTGATGGTCATTTTTGTATTTTTGGAACCCTTATAGCTTAA
*
66859617 TAAGTGACTTTGATGGTCATTTTTGTGTTTTTGGAACCCTTATAGCTTAA
1 TAAGTGACTTTGATGGTCATTTTTGTATTTTTGGAACCCTTATAGCTTAA
66859667 T
1 T
66859668 CTAGATAATG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.23, C:0.12, G:0.19, T:0.47
Consensus pattern (50 bp):
TAAGTGACTTTGATGGTCATTTTTGTATTTTTGGAACCCTTATAGCTTAA
Found at i:66859871 original size:20 final size:19
Alignment explanation
Indices: 66859835--66859885 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
66859825 ACGGGCTATT
*
66859835 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
66859854 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
66859874 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
66859886 GTTGCTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:66865128 original size:27 final size:27
Alignment explanation
Indices: 66865080--66865167 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 27
66865070 GGGGCAAAAT
* * *
66865080 GGTAATTTTACGCC-ACAAGGGTATCTC
1 GGTAATTCTAC-CCTACAGGGGTATTTC
* * *
66865107 GATAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
66865134 GGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
66865161 GGTAATT
1 GGTAATT
66865168 GTACAAGTTG
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
26 2 0.04
27 47 0.96
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:66871004 original size:80 final size:80
Alignment explanation
Indices: 66870920--66871068 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
66870910 TATGGTAACC
* * * *
66870920 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
66870984 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
66871000 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
66871065 CCGG
66 CCGG
66871069 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:66871010 original size:40 final size:38
Alignment explanation
Indices: 66870961--66871068 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
66870951 ATCACGATTT
*
66870961 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
66871001 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
66871041 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
66871069 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:66875494 original size:40 final size:39
Alignment explanation
Indices: 66875391--66875605 Score: 294
Period size: 40 Copynumber: 5.5 Consensus size: 39
66875381 TGGATGATAA
*
66875391 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-AT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATAT
66875430 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
*
66875469 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
*
66875509 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
66875549 CCGGGCT-AGTCCCGAAGGCATTTGAGCAAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAT
* *
66875588 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
66875606 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 8, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
38 29 0.18
39 60 0.37
40 74 0.45
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:66875595 original size:118 final size:118
Alignment explanation
Indices: 66875387--66875605 Score: 327
Period size: 118 Copynumber: 1.9 Consensus size: 118
66875377 TATTTGGATG
* *
66875387 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATCCGGGCTAAGCCCGAAGGCATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCGGGCTAAGCCCGAAGGCATT
* * *
66875452 TGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 TGAGCAAGCTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACT
*
66875505 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCT-AGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTA-AACCGGGCTAAG-CCCGAAGGCA
*
66875569 TTTGAGCAAG-TAGCTATATCC-GGCTAAATTCCGAAGG
64 TTTGAGCAAGCTA-CTATATCCGGGCTAAATCCCGAAGG
66875606 TACTTGGTTT
Statistics
Matches: 91, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
118 57 0.63
119 34 0.37
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (118 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCGGGCTAAGCCCGAAGGCATT
TGAGCAAGCTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACT
Found at i:66880800 original size:40 final size:40
Alignment explanation
Indices: 66880673--66880802 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
66880663 ATGCTGGAAA
* * * *
66880673 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTAG
* * *
66880713 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA-
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-AG
*
66880753 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTAG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTAG
66880793 TTATATCCGG
1 TTATATCCGG
66880803 TTATATTCCG
Statistics
Matches: 75, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
39 2 0.03
40 73 0.97
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTAG
Found at i:66886721 original size:40 final size:39
Alignment explanation
Indices: 66886619--66886834 Score: 251
Period size: 40 Copynumber: 5.5 Consensus size: 39
66886609 TGGATGATAA
* *
66886619 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATA-T
66886659 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* * *
66886698 CCAGGCTAAGTCCCGAAGGCATTTTTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
66886738 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
66886778 CCGGGCT-AGTCCCGAAGGCATTTGAGCAAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAT
* *
66886817 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
66886835 TACTTGGTTT
Statistics
Matches: 156, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
38 6 0.04
39 68 0.44
40 82 0.53
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:66886815 original size:79 final size:80
Alignment explanation
Indices: 66886615--66886836 Score: 267
Period size: 79 Copynumber: 2.8 Consensus size: 80
66886605 TATTTGGATG
* *
66886615 ATAACCGGGCTAAGTCCCGAAGGCATTTGCGCTAGT-GACTA-ATTCCGGGCTAAG-CCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAG-CTATA-TCCGGGCTAAGTCCCGAAGG
*
66886677 CATTTGTGCGAGCTACT
64 TATTTGTGCGAGCTACT
* * ** * *
66886694 ATATCCAGGCTAAGTCCCGAAGGCATTTTTGCGAGTTA-CTATAACCGGGCTAAGTCCCGAAGGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATATCCGGGCTAAGTCCCGAAGGT
*
66886758 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGCTACT
* *
66886774 ATAACCGGGCT-AGTCCCGAAGGCATTTGAGCAAGTAGCTATATCC-GGCTAAATTCCGAAGGTA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATATCCGGGCTAAGTCCCGAAGGTA
66886837 CTTGGTTTGG
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
78 18 0.15
79 70 0.57
80 34 0.28
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATATCCGGGCTAAGTCCCGAAGGTA
TTTGTGCGAGCTACT
Found at i:66886834 original size:39 final size:40
Alignment explanation
Indices: 66886615--66886801 Score: 263
Period size: 40 Copynumber: 4.7 Consensus size: 40
66886605 TATTTGGATG
* * *
66886615 ATAACCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
66886655 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGCTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
66886694 ATATCCAGGCTAAGTCCCGAAGGCATTTTTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
66886734 ATAACCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
66886774 ATAACCGGGCT-AGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
66886802 AGCAAGTAGC
Statistics
Matches: 131, Mismatches: 13, Indels: 7
0.87 0.09 0.05
Matches are distributed among these distances:
39 49 0.37
40 82 0.63
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:66891632 original size:10 final size:10
Alignment explanation
Indices: 66891617--66891651 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
66891607 TCTGTACATA
66891617 ATATGCCATG
1 ATATGCCATG
66891627 ATATGCACATG
1 ATATGC-CATG
66891638 ATATGCCATG
1 ATATGCCATG
66891648 ATAT
1 ATAT
66891652 ATACATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (10 bp):
ATATGCCATG
Found at i:66891636 original size:21 final size:21
Alignment explanation
Indices: 66891612--66891651 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
66891602 ACTGATCTGT
66891612 ACATAATATGCCATGATATGC
1 ACATAATATGCCATGATATGC
*
66891633 ACATGATATGCCATGATAT
1 ACATAATATGCCATGATAT
66891652 ATACATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATAATATGCCATGATATGC
Found at i:66891657 original size:21 final size:20
Alignment explanation
Indices: 66891611--66891663 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
66891601 TACTGATCTG
*
66891611 TACATAATATGCCATGATATG
1 TACAT-ATATGCCATGATATA
*
66891632 CACATGATATGCCATGATATA
1 TACAT-ATATGCCATGATATA
66891653 TACATATATGC
1 TACATATATGC
66891664 ACGGGTTGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 6 0.21
21 22 0.79
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (20 bp):
TACATATATGCCATGATATA
Found at i:66899522 original size:20 final size:20
Alignment explanation
Indices: 66899497--66899536 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
66899487 ATACTGATTT
66899497 GTACATAATATACCATGATA
1 GTACATAATATACCATGATA
* *
66899517 GTACATGATATGCCATGATA
1 GTACATAATATACCATGATA
66899537 TATACATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (20 bp):
GTACATAATATACCATGATA
Found at i:66899547 original size:20 final size:20
Alignment explanation
Indices: 66899498--66899549 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
66899488 TACTGATTTG
* *
66899498 TACATAATATACCATGATAG
1 TACATAATATGCCATGATAA
*
66899518 TACATGATATGCCATGATATA
1 TACATAATATGCCATGATA-A
66899539 TACAT-ATATGC
1 TACATAATATGC
66899550 ACGAGTTGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 23 0.82
21 5 0.18
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (20 bp):
TACATAATATGCCATGATAA
Found at i:66902740 original size:8 final size:8
Alignment explanation
Indices: 66902727--66902752 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
66902717 AAATTGATAT
66902727 ATGCCGAA
1 ATGCCGAA
66902735 ATGCCGAA
1 ATGCCGAA
66902743 ATGCCGAA
1 ATGCCGAA
66902751 AT
1 AT
66902753 TTCGGCATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (8 bp):
ATGCCGAA
Found at i:66903219 original size:25 final size:25
Alignment explanation
Indices: 66903173--66903221 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
66903163 CCCTTATAAT
* *
66903173 GTGAAAATGACCTTTTTTCCCCTAG
1 GTGAAAATGACCTTTATACCCCTAG
66903198 GTGAAAATGA-CTATTATACCCCTA
1 GTGAAAATGACCT-TTATACCCCTA
66903222 AGGTTATGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 19 0.90
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (25 bp):
GTGAAAATGACCTTTATACCCCTAG
Found at i:66903282 original size:10 final size:10
Alignment explanation
Indices: 66903267--66903301 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
66903257 TTTGTACATA
66903267 ATATGCCATG
1 ATATGCCATG
66903277 ATATGCACATG
1 ATATGC-CATG
66903288 ATATGCCATG
1 ATATGCCATG
66903298 ATAT
1 ATAT
66903302 ATTAATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (10 bp):
ATATGCCATG
Found at i:66903286 original size:21 final size:21
Alignment explanation
Indices: 66903262--66903301 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
66903252 ACTGATTTGT
66903262 ACATAATATGCCATGATATGC
1 ACATAATATGCCATGATATGC
*
66903283 ACATGATATGCCATGATAT
1 ACATAATATGCCATGATAT
66903302 ATTAATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATAATATGCCATGATATGC
Found at i:66909141 original size:40 final size:40
Alignment explanation
Indices: 66908881--66909118 Score: 356
Period size: 40 Copynumber: 6.0 Consensus size: 40
66908871 TCGAATGATG
* * * *
66908881 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
66908921 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
66908961 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
66909001 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
66909041 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
** * *
66909081 TCCGGGTTAAG-TCCCGAAGGCTTTTGTGCGAGCTACTA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
66909119 TAACCAGGCT
Statistics
Matches: 187, Mismatches: 8, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
39 1 0.01
40 178 0.95
41 8 0.04
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:66909164 original size:120 final size:119
Alignment explanation
Indices: 66908885--66909165 Score: 367
Period size: 120 Copynumber: 2.3 Consensus size: 119
66908875 ATGATGTCCG
66908885 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATTTGT
1 GGCTAAGTCCCGAAGGCATTTGTGC-AAGTAG-CTATATCCGGACTAAGATCCGAAGGCATTTGT
*
66908948 GCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCC
64 GCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCC
* *
66909004 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGACTAAGATCCGAAGGCATTTG
1 GG-CTAAG-TCCCGAAGGCATTTGTGCAAG-TAGCTATATCCGGACTAAGATCCGAAGGCATTTG
** *
66909067 TGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCTTTTGTGCGAGCTACTATAA-CC
63 TGCGAGTTACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGCTACTA-AATCC
* **
66909124 AGGCTATGTCCCGAAGGCATTTGAACAAGTAGCTATATCCGG
1 -GGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGG
66909166 TTAAATTCCG
Statistics
Matches: 141, Mismatches: 11, Indels: 19
0.82 0.06 0.11
Matches are distributed among these distances:
119 6 0.04
120 122 0.87
121 13 0.09
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (119 bp):
GGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGACTAAGATCCGAAGGCATTTGTGC
GAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCC
Found at i:66917215 original size:40 final size:40
Alignment explanation
Indices: 66917166--66917355 Score: 242
Period size: 40 Copynumber: 4.8 Consensus size: 40
66917156 GTGCTAAGTG
*
66917166 ACTATATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTT
1 ACTAAATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTT
*
66917206 ACTAAATCCGGACTAAGATTCGAAGGCATTCGTGCGAGTT
1 ACTAAATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTT
*
66917246 ACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTT
1 ACTAAATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTT
** * * *
66917286 ACTAAATCCGGGTTAAG-TCCCGAAGGCTTTTGTGCGAGCT
1 ACTAAATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTT
* *
66917326 ACTATAA-CCGGGCTATG-TCCCGAAGGCATT
1 ACTA-AATCCGGACTAAGAT-CCGAAGGCATT
66917356 TGAACGAGTA
Statistics
Matches: 137, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 1 0.01
40 134 0.98
41 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (40 bp):
ACTAAATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTT
Found at i:66917310 original size:80 final size:79
Alignment explanation
Indices: 66917138--66917357 Score: 266
Period size: 80 Copynumber: 2.7 Consensus size: 79
66917128 GATGTCCAGG
* * * *
66917138 CTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTCGTGCGA
1 CTAAGTCCCGAAGGCTTTGTGC-GAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGA
66917203 GTTACTAAATCCGGA
65 GTTACTAAATCCGGA
* *
66917218 CTAAGAT-TCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCG
1 CTAAG-TCCCGAAGGC-TTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCG
*
66917282 AGTTACTAAATCCGGG
64 AGTTACTAAATCCGGA
* * * *
66917298 TTAAGTCCCGAAGGCTTTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
1 CTAAGTCCCGAAGGC-TTTGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
66917358 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
79 2 0.02
80 110 0.91
81 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
CTAAGTCCCGAAGGCTTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
TTACTAAATCCGGA
Found at i:66917371 original size:40 final size:40
Alignment explanation
Indices: 66917136--66917357 Score: 190
Period size: 40 Copynumber: 5.5 Consensus size: 40
66917126 ATGATGTCCA
* *
66917136 GGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGCT-ACTATAACCG
* * *
66917176 GACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTA-AATCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACTATAA-CCG
* * * *
66917216 GACTAAGAT-TCGAAGGCATTCGTGCGAGTTACTA-AATCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACTATAA-CCG
* *
66917256 GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AATCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACTATAA-CCG
* *
66917296 GGTTAAGTCCCGAAGGCTTTTGTGCGAGCTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAACCG
*
66917336 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
66917358 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 14, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
39 2 0.01
40 150 0.93
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAACCG
Found at i:66921723 original size:27 final size:26
Alignment explanation
Indices: 66921684--66921795 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
66921674 AGCATGGCTG
* *
66921684 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* *
66921710 CCAGATACTGATAATCGTGGTAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
66921738 CCAGAACAGATATATGTGGCAAAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
66921765 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
66921792 CCAG
1 CCAG
66921796 GACTCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.08
27 51 0.70
28 16 0.22
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:66921777 original size:54 final size:54
Alignment explanation
Indices: 66921684--66921795 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
66921674 AGCATGGCTG
* * * *
66921684 CCAGAACAGATAATGTGACAGAGTCACCAGATACTGATAATCGTGGTAGAGCCA
1 CCAGAACAGATAATGTGACAAAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
66921738 CCAGAACAGATATATGTGGCAAAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAAAGCCACCAGATACAGATAATCGTGGCAGAGCCA
66921792 CCAG
1 CCAG
66921796 GACTCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAAAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:66921963 original size:28 final size:26
Alignment explanation
Indices: 66921901--66921963 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
66921891 AAAGTAACCT
** * *
66921901 TAGGGGTATAATGGTAATTTTGCACT
1 TAGGGGTATAACAGTAATTTTCCACA
66921927 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTTCC--ACA
66921955 TAGGGGTAT
1 TAGGGGTAT
66921964 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 20 0.65
28 11 0.35
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.35
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTCCACA
Found at i:66927766 original size:24 final size:25
Alignment explanation
Indices: 66927713--66927786 Score: 73
Period size: 24 Copynumber: 3.1 Consensus size: 25
66927703 TCCGGGCTAT
* *
66927713 ATAATCG-GAAGCTCA-TAAGAGCC
1 ATAATCGACAAGCTCACAAAGAGCC
** * *
66927736 ATAATCGGGAAGTTCACAAAGAACC
1 ATAATCGACAAGCTCACAAAGAGCC
66927761 AT-ATCGACAAGCTCACAAAGAGCC
1 ATAATCGACAAGCTCACAAAGAGCC
66927785 AT
1 AT
66927787 GTAATAGAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
23 7 0.17
24 27 0.64
25 8 0.19
ACGTcount: A:0.42, C:0.23, G:0.19, T:0.16
Consensus pattern (25 bp):
ATAATCGACAAGCTCACAAAGAGCC
Found at i:66942183 original size:20 final size:20
Alignment explanation
Indices: 66942160--66942225 Score: 87
Period size: 20 Copynumber: 3.3 Consensus size: 20
66942150 CACTTTGGCA
* *
66942160 CCTCTAATTGCATTTTGATG
1 CCTCTGATTGCATTTTGGTG
*
66942180 CCTCTGATTTCATTTTGGTG
1 CCTCTGATTGCATTTTGGTG
**
66942200 CCTCTGATTGCGCTTTGGTG
1 CCTCTGATTGCATTTTGGTG
66942220 CCTCTG
1 CCTCTG
66942226 TTTGTACTTC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.11, C:0.24, G:0.21, T:0.44
Consensus pattern (20 bp):
CCTCTGATTGCATTTTGGTG
Found at i:66942197 original size:40 final size:40
Alignment explanation
Indices: 66942137--66942225 Score: 97
Period size: 40 Copynumber: 2.2 Consensus size: 40
66942127 TTACAGTTCA
* * *
66942137 ATGCCTTTGTTTTCACTTTGGCACCTCTAATTGCATTTTG
1 ATGCCTCTGATTTCACTTTGGCACCTCTAATTGCACTTTG
* ** * *
66942177 ATGCCTCTGATTTCATTTTGGTGCCTCTGATTGCGCTTTG
1 ATGCCTCTGATTTCACTTTGGCACCTCTAATTGCACTTTG
*
66942217 GTGCCTCTG
1 ATGCCTCTG
66942226 TTTGTACTTC
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.11, C:0.24, G:0.20, T:0.45
Consensus pattern (40 bp):
ATGCCTCTGATTTCACTTTGGCACCTCTAATTGCACTTTG
Found at i:66942239 original size:20 final size:20
Alignment explanation
Indices: 66942178--66942240 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 20
66942168 TGCATTTTGA
* * *
66942178 TGCCTCTGATTTCATTTTGG
1 TGCCTCTGATTGCACTTCGG
* *
66942198 TGCCTCTGATTGCGCTTTGG
1 TGCCTCTGATTGCACTTCGG
* *
66942218 TGCCTCTGTTTGTACTTCGG
1 TGCCTCTGATTGCACTTCGG
66942238 TGC
1 TGC
66942241 TTTTGTTAGC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.06, C:0.24, G:0.25, T:0.44
Consensus pattern (20 bp):
TGCCTCTGATTGCACTTCGG
Found at i:66951207 original size:29 final size:29
Alignment explanation
Indices: 66951165--66951246 Score: 164
Period size: 29 Copynumber: 2.8 Consensus size: 29
66951155 ATACCAAAAG
66951165 ATTTCCAGCATGCACACTTAGTGCCATAT
1 ATTTCCAGCATGCACACTTAGTGCCATAT
66951194 ATTTCCAGCATGCACACTTAGTGCCATAT
1 ATTTCCAGCATGCACACTTAGTGCCATAT
66951223 ATTTCCAGCATGCACACTTAGTGC
1 ATTTCCAGCATGCACACTTAGTGC
66951247 TAATCTCGTC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (29 bp):
ATTTCCAGCATGCACACTTAGTGCCATAT
Found at i:66960418 original size:21 final size:22
Alignment explanation
Indices: 66960390--66960438 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
66960380 CCCTTTAATG
*
66960390 CATACACCTATACAA-CATA-A
1 CATACACCAATACAAGCATATA
66960410 CATAGCACCAATACAAGCATATA
1 CATA-CACCAATACAAGCATATA
66960433 CATACA
1 CATACA
66960439 ACTAACATCC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 4 0.16
21 10 0.40
22 6 0.24
23 5 0.20
ACGTcount: A:0.49, C:0.29, G:0.04, T:0.18
Consensus pattern (22 bp):
CATACACCAATACAAGCATATA
Found at i:66967602 original size:24 final size:25
Alignment explanation
Indices: 66967565--66967616 Score: 88
Period size: 24 Copynumber: 2.1 Consensus size: 25
66967555 CTGGAGGCCT
66967565 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCCTCTTTTAATAACTGGGGCAAA
*
66967590 AGCC-CTTTTAATAACTGGGGCATA
1 AGCCTCTTTTAATAACTGGGGCAAA
66967614 AGC
1 AGC
66967617 ATAAGCCCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 22 0.85
25 4 0.15
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (25 bp):
AGCCTCTTTTAATAACTGGGGCAAA
Found at i:66967702 original size:20 final size:20
Alignment explanation
Indices: 66967674--66967744 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
66967664 GCATTTATGA
*
66967674 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
66967694 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
* *
66967714 ATATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
66967734 ACATATCATGT
1 ACATATCATGT
66967745 TTATCAAGAT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.37
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:66967709 original size:11 final size:11
Alignment explanation
Indices: 66967679--66967733 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
66967669 TATGAACATC
66967679 TCATGTGCATA
1 TCATGTGCATA
*
66967690 TCA--TACATA
1 TCATGTGCATA
66967699 TCATGTGCATA
1 TCATGTGCATA
* *
66967710 TCATAT--ATG
1 TCATGTGCATA
66967719 TCATGTGCATA
1 TCATGTGCATA
66967730 TCAT
1 TCAT
66967734 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:66975989 original size:18 final size:18
Alignment explanation
Indices: 66975955--66976004 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
66975945 ACAAAAAGAA
*
66975955 TCAAAATAATTTTTAAAAT
1 TCAAAAT-ATTTATAAAAT
66975974 TCAAAATATTTATAAAAT
1 TCAAAATATTTATAAAAT
*
66975992 TCCAAAT-TTTATA
1 TCAAAATATTTATA
66976005 TTTTTTCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.21
18 16 0.55
19 7 0.24
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (18 bp):
TCAAAATATTTATAAAAT
Found at i:66976578 original size:44 final size:46
Alignment explanation
Indices: 66976492--66976578 Score: 126
Period size: 46 Copynumber: 1.9 Consensus size: 46
66976482 AGAAGTGTAA
*
66976492 ATTAAATTATAATATTTTTAAACATGTACTAATTATCACAACTCTG
1 ATTAAATTATAATATTTTTAAACATATACTAATTATCACAACTCTG
*
66976538 ATTAAATTATAATTATTTTT-AA-ATATA-TAATTATCTCAACT
1 ATTAAATTATAA-TATTTTTAAACATATACTAATTATCACAACT
66976579 TCTATTTTAC
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
44 13 0.34
45 4 0.11
46 14 0.37
47 7 0.18
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (46 bp):
ATTAAATTATAATATTTTTAAACATATACTAATTATCACAACTCTG
Found at i:66976882 original size:13 final size:13
Alignment explanation
Indices: 66976864--66976889 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
66976854 AGAATAATTT
66976864 TTTGAAAATTTAG
1 TTTGAAAATTTAG
66976877 TTTGAAAATTTAG
1 TTTGAAAATTTAG
66976890 ACGTTTGGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (13 bp):
TTTGAAAATTTAG
Found at i:66978005 original size:42 final size:41
Alignment explanation
Indices: 66977942--66978036 Score: 104
Period size: 42 Copynumber: 2.3 Consensus size: 41
66977932 TGAGATTACA
* *
66977942 TATAAGACCATACTTAAGATATAGCATT-ATTATGATATTTCG
1 TATAAGACCATACTTAAGATATAGCATTGA-TATGAGA-ATCG
* *
66977984 TATAAGACCATA-TCTAGGATATGGCATTGATATGAGAATCG
1 TATAAGACCATACT-TAAGATATAGCATTGATATGAGAATCG
*
66978025 TGTAAGACCATA
1 TATAAGACCATA
66978037 GTTAGGTTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
41 15 0.33
42 30 0.65
43 1 0.02
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.33
Consensus pattern (41 bp):
TATAAGACCATACTTAAGATATAGCATTGATATGAGAATCG
Found at i:66978058 original size:42 final size:41
Alignment explanation
Indices: 66977981--66978099 Score: 123
Period size: 42 Copynumber: 2.9 Consensus size: 41
66977971 TTATGATATT
* *
66977981 TCGTATAAGACCATATCTAGGATATGGCATTGATATGAGAA
1 TCGTGTAAGACCATATCTAGGATATGGCATCGATATGAGAA
* * *
66978022 TCGTGTAAGACCATAGT-TAGGTTATTGGCGTCGATATGAGAT
1 TCGTGTAAGACCATA-TCTAGGATA-TGGCATCGATATGAGAA
* * * *
66978064 TCCATGTAAGACCATATCTGGGATATGACATTGATA
1 T-CGTGTAAGACCATATCTAGGATATGGCATCGATA
66978100 CAGTACTATG
Statistics
Matches: 63, Mismatches: 11, Indels: 7
0.78 0.14 0.09
Matches are distributed among these distances:
41 20 0.32
42 25 0.40
43 18 0.29
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (41 bp):
TCGTGTAAGACCATATCTAGGATATGGCATCGATATGAGAA
Found at i:66981992 original size:15 final size:15
Alignment explanation
Indices: 66981972--66982003 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
66981962 AATTTCACTA
66981972 TTATATCTTTTATAT
1 TTATATCTTTTATAT
66981987 TTATATCTTTTATAT
1 TTATATCTTTTATAT
66982002 TT
1 TT
66982004 TGCATGCATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (15 bp):
TTATATCTTTTATAT
Found at i:66982731 original size:15 final size:15
Alignment explanation
Indices: 66982699--66982727 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
66982689 ATTTTCTATG
66982699 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
66982714 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
66982728 ATTTTCATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:66983877 original size:38 final size:38
Alignment explanation
Indices: 66983829--66983950 Score: 208
Period size: 38 Copynumber: 3.2 Consensus size: 38
66983819 ATACATATGT
*
66983829 CATGACATAGGATTCCGATATATGTGTGCGAGTAAGAC
1 CATGGCATAGGATTCCGATATATGTGTGCGAGTAAGAC
* *
66983867 CATGGTATAGGATTCCGATATACGTGTGCGAGTAAGAC
1 CATGGCATAGGATTCCGATATATGTGTGCGAGTAAGAC
*
66983905 CATGGCATAGGATTCCAATATATGTGTGCGAGTAAGAC
1 CATGGCATAGGATTCCGATATATGTGTGCGAGTAAGAC
66983943 CATGGCAT
1 CATGGCAT
66983951 CGATATGTGA
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 78 1.00
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.26
Consensus pattern (38 bp):
CATGGCATAGGATTCCGATATATGTGTGCGAGTAAGAC
Found at i:66993097 original size:46 final size:46
Alignment explanation
Indices: 66993047--66993222 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
66993037 TGGTTGAGCA
66993047 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
66993093 TCCGAATTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
66993138 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66993186 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66993223 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66993203 original size:93 final size:93
Alignment explanation
Indices: 66993044--66993214 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
66993034 GGATGGTTGA
* *
66993044 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAATTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
66993109 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
66993137 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
*
66993202 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
66993215 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:66993480 original size:19 final size:20
Alignment explanation
Indices: 66993443--66993480 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
66993433 ATAAGGTGGT
66993443 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
66993463 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
66993481 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:66998234 original size:93 final size:93
Alignment explanation
Indices: 66998122--66998293 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
66998112 GCCCATAAGT
* *
66998122 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
66998187 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
66998215 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
66998280 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
66998294 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:66998289 original size:46 final size:46
Alignment explanation
Indices: 66998114--66998289 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
66998104 TGTAACCCGC
* * *
66998114 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
66998160 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
66998210 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
66998253 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
66998290 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:67006088 original size:40 final size:40
Alignment explanation
Indices: 67006043--67006172 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
67006033 CGGAATACAA
67006043 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
67006083 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
67006123 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
67006163 CCGGATATAA
1 CCGGATATAA
67006173 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:67011638 original size:29 final size:29
Alignment explanation
Indices: 67011603--67011676 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
67011593 GTTGTGAGAT
* *
67011603 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
67011632 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
67011661 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
67011677 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:67019059 original size:2 final size:2
Alignment explanation
Indices: 67019052--67019086 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
67019042 AGTAGAGTTG
*
67019052 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
67019087 CATTGTGACA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:67020242 original size:2 final size:2
Alignment explanation
Indices: 67020232--67020267 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
67020222 GTTATGTGTG
*
67020232 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
67020268 CATGAGTATG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:67020785 original size:28 final size:29
Alignment explanation
Indices: 67020745--67020818 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 29
67020735 AAATTTGTAC
*
67020745 AGCACTAAGTGTGCGAGTTTG-AT-TATAT
1 AGCACTAAGTGTGCGAG-CTGAATATATAT
67020773 AGCACTAAGTGTGCGAGCTGAATATATATAT
1 AGCACTAAGTGTGCGAGCTG-A-ATATATAT
67020804 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
67020819 GACTCAATTA
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
27 2 0.05
28 17 0.41
30 2 0.05
31 20 0.49
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.30
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAATATATAT
Found at i:67022914 original size:29 final size:29
Alignment explanation
Indices: 67022879--67022952 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
67022869 GTTGTGAGAT
* *
67022879 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
67022908 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
*
67022937 TGGCACTCAGTGTGCG
1 TGGCACTAAGTGTGCG
67022953 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:67028119 original size:34 final size:34
Alignment explanation
Indices: 67028081--67028145 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 34
67028071 TGATTAAAGA
67028081 ATTTTCTAGAAAAATTAATTTGGA-AAATTAAGTG
1 ATTTT-TAGAAAAATTAATTTGGATAAATTAAGTG
* * *
67028115 ATTTTTGGAAAAATTGATTTTGATAAATTAA
1 ATTTTTAGAAAAATTAATTTGGATAAATTAA
67028146 AATTAAATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 15 0.56
34 12 0.44
ACGTcount: A:0.43, C:0.02, G:0.14, T:0.42
Consensus pattern (34 bp):
ATTTTTAGAAAAATTAATTTGGATAAATTAAGTG
Found at i:67030622 original size:62 final size:62
Alignment explanation
Indices: 67030502--67030615 Score: 146
Period size: 62 Copynumber: 1.9 Consensus size: 62
67030492 AGTGATTATC
* * *
67030502 TTAATATTTAATTTAATTTAATGTTTATCTTGTAGATAAACATTCTATTATTTTATTAAGAT
1 TTAATATTTAATTTAATCTAATATTTATCTTGTAGATAAACATTATATTATTTTATTAAGAT
* *
67030564 TTAAT-TTTAAATTTAATCTAATATTTATC-T-TA-ATAAATATTATATTAATTTA
1 TTAATATTT-AATTTAATCTAATATTTATCTTGTAGATAAACATTATATTATTTTA
67030616 ATATTAAAGT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
59 17 0.37
60 2 0.04
61 4 0.09
62 23 0.50
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.54
Consensus pattern (62 bp):
TTAATATTTAATTTAATCTAATATTTATCTTGTAGATAAACATTATATTATTTTATTAAGAT
Found at i:67034978 original size:43 final size:43
Alignment explanation
Indices: 67034917--67035071 Score: 258
Period size: 43 Copynumber: 3.6 Consensus size: 43
67034907 CCGGCATTAT
67034917 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
*
67034960 GCCTGCTAGGCACGAAGGCCCGAATACACATCA-TCAGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACT-GGCACGAA
* *
67035003 GCTTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
*
67035046 GCCTGCTAGGCATGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
67035072 TAATACTAGC
Statistics
Matches: 104, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
42 1 0.01
43 103 0.99
ACGTcount: A:0.30, C:0.32, G:0.26, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
Found at i:67035121 original size:38 final size:38
Alignment explanation
Indices: 67035064--67035359 Score: 411
Period size: 38 Copynumber: 7.8 Consensus size: 38
67035054 GGCATGAAGG
* * * * *
67035064 CCCGAATATAATACTAGCACTAGGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
67035102 CCCGGATATATTACCAGCACGAAGCCTACGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* *
67035140 CCCGGATATATTA-CAGCACAAAGCCTGTGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* *
67035177 CCGGGATATATTACTAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* *
67035215 CCCGGATATATTACTAGCATGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
67035253 CCCGGACATATTA-CAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
67035290 CCTGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
67035328 CCCGGATATAGTT-CCAGCA-TATAGCCTGCGGG
1 CCCGGATATA-TTACCAGCACGA-AGCCTGCGGG
67035360 TCTTTAGGCC
Statistics
Matches: 232, Mismatches: 22, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
37 67 0.29
38 163 0.70
39 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (38 bp):
CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
Found at i:67035158 original size:75 final size:76
Alignment explanation
Indices: 67035064--67035359 Score: 413
Period size: 75 Copynumber: 3.9 Consensus size: 76
67035054 GGCATGAAGG
* * *
67035064 CCCGAATATAATACTAGCACTAGGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCT
1 CCCGGATATATTACTAGCACTAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCT
*
67035129 ACGGGATTTAA
66 GCGGGATTTAA
* * * *
67035140 CCCGGATATATTAC-AGCACAAAGCCTGTGGGATTTAACCGGGATATATTACTAGCACGAAGCCT
1 CCCGGATATATTACTAGCACTAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCT
67035204 GCGGGATTTAA
66 GCGGGATTTAA
*
67035215 CCCGGATATATTACTAGCA-TGAAGCCTGCGGGATTTAACCCGGACATATTA-CAGCACGAAGCC
1 CCCGGATATATTACTAGCACT-AAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCC
67035278 TGCGGGATTTAA
65 TGCGGGATTTAA
* * * *
67035290 CCTGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAGTT-CCAGCA-TATAGC
1 CCCGGATATATTACTAGCACTAAGCCTGCGGGATTTAACCCGGATATA-TTACCAGCACGA-AGC
67035353 CTGCGGG
64 CTGCGGG
67035360 TCTTTAGGCC
Statistics
Matches: 196, Mismatches: 18, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
75 136 0.69
76 60 0.31
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (76 bp):
CCCGGATATATTACTAGCACTAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCT
GCGGGATTTAA
Found at i:67035267 original size:113 final size:113
Alignment explanation
Indices: 67035069--67035359 Score: 451
Period size: 113 Copynumber: 2.6 Consensus size: 113
67035059 GAAGGCCCGA
* * * * *
67035069 ATATAATACTAGCACTAGGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTACGGG
1 ATATATTACTAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCATGAAGCCTGCGGG
* *
67035134 ATTTAACCCGGATATATTACAGCACAAAGCCTGTGGGATTTAACCGGG
66 ATTTAACCCGGACATATTACAGCACAAAGCCTGCGGGATTTAACCGGG
*
67035182 ATATATTACTAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACTAGCATGAAGCCTGCGGG
1 ATATATTACTAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCATGAAGCCTGCGGG
* *
67035247 ATTTAACCCGGACATATTACAGCACGAAGCCTGCGGGATTTAACCTGG
66 ATTTAACCCGGACATATTACAGCACAAAGCCTGCGGGATTTAACCGGG
*
67035295 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAGTT-CCAGCAT-ATAGCCTGCG
1 ATATATTACTAGCACGAAGCCTGCGGGATTTAACCCGGATATA-TTACCAGCATGA-AGCCTGCG
67035358 GG
64 GG
67035360 TCTTTAGGCC
Statistics
Matches: 164, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
112 1 0.01
113 161 0.98
114 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (113 bp):
ATATATTACTAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCATGAAGCCTGCGGG
ATTTAACCCGGACATATTACAGCACAAAGCCTGCGGGATTTAACCGGG
Found at i:67039060 original size:46 final size:46
Alignment explanation
Indices: 67039007--67039182 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
67038997 TATTTGGGCA
67039007 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
67039053 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
67039100 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
67039146 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67039183 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:67039162 original size:93 final size:93
Alignment explanation
Indices: 67039003--67039174 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67038993 GGGATATTTG
* *
67039003 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
67039068 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
67039096 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
67039161 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
67039175 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:67042164 original size:15 final size:15
Alignment explanation
Indices: 67042125--67042203 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
67042115 GTATCTTGGG
*
67042125 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
67042140 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
67042155 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
67042169 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
67042184 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
67042198 TTTCTT
1 TTTCTT
67042204 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:67042188 original size:29 final size:29
Alignment explanation
Indices: 67042116--67042202 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
67042106 CATAGTATCG
* * * *
67042116 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
67042146 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
67042175 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
67042203 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Done.