Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 237 of 444
Found at i:67044640 original size:46 final size:46
Alignment explanation
Indices: 67044587--67044762 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
67044577 TATTTGGGCA
67044587 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
67044633 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
67044680 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
67044726 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67044763 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:67044742 original size:93 final size:93
Alignment explanation
Indices: 67044583--67044754 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67044573 GGGATATTTG
* *
67044583 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
67044648 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
67044676 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
67044741 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
67044755 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:67054298 original size:22 final size:22
Alignment explanation
Indices: 67054270--67054313 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
67054260 GCTTAGTAAG
67054270 CTCGTATGAAAGAAATAAACTA
1 CTCGTATGAAAGAAATAAACTA
67054292 CTCGTATGAAAGAAATAAACTA
1 CTCGTATGAAAGAAATAAACTA
67054314 ACCTTACCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.14, G:0.14, T:0.23
Consensus pattern (22 bp):
CTCGTATGAAAGAAATAAACTA
Found at i:67055567 original size:27 final size:27
Alignment explanation
Indices: 67055492--67055618 Score: 106
Period size: 27 Copynumber: 4.9 Consensus size: 27
67055482 AACAGACATC
* * *
67055492 ACATAGGGGTAAAACAGTCATCTTACC
1 ACATAAGGGTAAAACAGTCATTTTACT
* * * *
67055519 ATAAAAGGGCAAAACAATCATTTTACT
1 ACATAAGGGTAAAACAGTCATTTTACT
67055546 ACATAAGGGTAAAACAGTCA-TTT--T
1 ACATAAGGGTAAAACAGTCATTTTACT
* *
67055570 ---TAAGGGTAAAATAGTTATTTTACCT
1 ACATAAGGGTAAAACAGTCATTTTA-CT
*
67055595 -CATAAGGGCAAAACAGTCATTTTA
1 ACATAAGGGTAAAACAGTCATTTTA
67055619 TTAACTTAGG
Statistics
Matches: 78, Mismatches: 16, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
21 15 0.19
22 3 0.04
24 1 0.01
25 1 0.01
26 3 0.04
27 55 0.71
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (27 bp):
ACATAAGGGTAAAACAGTCATTTTACT
Found at i:67055575 original size:21 final size:21
Alignment explanation
Indices: 67055549--67055590 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
67055539 TTTTACTACA
67055549 TAAGGGTAAAACAGTCATTTT
1 TAAGGGTAAAACAGTCATTTT
* *
67055570 TAAGGGTAAAATAGTTATTTT
1 TAAGGGTAAAACAGTCATTTT
67055591 ACCTCATAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.38
Consensus pattern (21 bp):
TAAGGGTAAAACAGTCATTTT
Found at i:67066220 original size:46 final size:45
Alignment explanation
Indices: 67066148--67066322 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 45
67066138 TGTAACCCGC
*
67066148 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTT-GCAT
* *
67066194 CCATGAGTGAACTCGGACTCAACTCAAC-AGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTGCAT
* * * *
67066243 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCCGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAC-GTTGCAT
67066286 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67066323 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 9 0.08
46 75 0.69
47 9 0.08
48 2 0.02
49 3 0.03
50 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTGCAT
Found at i:67066313 original size:92 final size:93
Alignment explanation
Indices: 67066156--67066325 Score: 288
Period size: 92 Copynumber: 1.8 Consensus size: 93
67066146 GCCCATAAGT
* * *
67066156 GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67066221 C-AGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
67066248 GAACTCGGACTCAACTCAACGAGTTCCGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67066313 CGAGTTCGGATGC
66 CGAGTTCGGATGC
67066326 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 61 0.85
93 11 0.15
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67069981 original size:39 final size:40
Alignment explanation
Indices: 67069927--67070082 Score: 210
Period size: 39 Copynumber: 4.0 Consensus size: 40
67069917 GATGTGTATG
*
67069927 AATGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCA
1 AATGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCA
67069966 AATGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCA
1 AATGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCA
* *
67070005 ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCA
1 AATGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCA
** * * * *
67070045 TTTGTGCGGGTTATCATA-CCGGGCTATGTCCCGAAGGC
1 AATGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGC
67070083 GTTTGAACGA
Statistics
Matches: 107, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
39 83 0.78
40 24 0.22
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (40 bp):
AATGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCA
Found at i:67070094 original size:79 final size:78
Alignment explanation
Indices: 67069937--67070120 Score: 194
Period size: 79 Copynumber: 2.3 Consensus size: 78
67069927 AATGTGCGAA
* * *
67069937 TTGTGATATCCGGGCTAAGCCCGAAGGCAAATGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAG
1 TTGTGATATCCGGGTTAAGCCCGAAGGCAAATGTGCGAGTTATCATATCCGGGCTAAGCCCGAAG
**
67070002 GCAATTGTGCGAG
66 GCAATTGAACGAG
** * *
67070015 TTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTATCATA-CCGGGCTATGTCCCGA
1 TTGTGATATCCGGGTTAAG-CCCGAAGGCAAATGTGCGAGTTATCATATCCGGGCTAAG-CCCGA
**
67070079 AGGCGTTTGAACGAG
64 AGGCAATTGAACGAG
* *
67070094 TAGCT-ATATCC-GGTTAAACTCCGAAGG
1 TTG-TGATATCCGGGTTAAGC-CCGAAGG
67070121 TATGTGATCT
Statistics
Matches: 89, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
77 1 0.01
78 40 0.45
79 47 0.53
80 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.25
Consensus pattern (78 bp):
TTGTGATATCCGGGTTAAGCCCGAAGGCAAATGTGCGAGTTATCATATCCGGGCTAAGCCCGAAG
GCAATTGAACGAG
Found at i:67077848 original size:39 final size:40
Alignment explanation
Indices: 67077794--67077949 Score: 210
Period size: 39 Copynumber: 4.0 Consensus size: 40
67077784 GATGTGTATG
*
67077794 AATGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCA
1 AATGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCA
67077833 AATGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCA
1 AATGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCA
* *
67077872 ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCA
1 AATGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCA
** * * * *
67077912 TTTGTGCG-GTTATCATAACCGGGCTATGTCCCGAAGGC
1 AATGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGC
67077950 GTTTGAACGA
Statistics
Matches: 107, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
39 90 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (40 bp):
AATGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCA
Found at i:67077961 original size:79 final size:78
Alignment explanation
Indices: 67077804--67077987 Score: 194
Period size: 78 Copynumber: 2.3 Consensus size: 78
67077794 AATGTGCGAA
* * * *
67077804 TTGTGATATCCGGGCTAAGCCCGAAGGCAAATGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAG
1 TTGTGATATCCGGGTTAAGCCCGAAGGCAAATGTGCGAGTTATCATAACCGGGCTAAGCCCGAAG
**
67077869 GCAATTGTGCGAG
66 GCAATTGAACGAG
** *
67077882 TTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG-GTTATCATAACCGGGCTATGTCCCGA
1 TTGTGATATCCGGGTTAAG-CCCGAAGGCAAATGTGCGAGTTATCATAACCGGGCTAAG-CCCGA
**
67077946 AGGCGTTTGAACGAG
64 AGGCAATTGAACGAG
* *
67077961 TAGCT-ATATCC-GGTTAAACTCCGAAGG
1 TTG-TGATATCCGGGTTAAGC-CCGAAGG
67077988 TATGTGATTG
Statistics
Matches: 89, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
77 1 0.01
78 47 0.53
79 40 0.45
80 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (78 bp):
TTGTGATATCCGGGTTAAGCCCGAAGGCAAATGTGCGAGTTATCATAACCGGGCTAAGCCCGAAG
GCAATTGAACGAG
Found at i:67082757 original size:93 final size:93
Alignment explanation
Indices: 67082593--67082763 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
67082583 GCCCATAAGT
* * *
67082593 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
67082658 CAAGTTCGGATGCCTAGTTACATCTCAC
66 CAAGTTCGGATGCCTAGTTACATCTCAC
* **
67082686 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
67082751 CGAGTTCGGATGC
66 CAAGTTCGGATGC
67082764 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67082760 original size:46 final size:46
Alignment explanation
Indices: 67082585--67082760 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
67082575 TGTAACCCGC
* * * *
67082585 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
* * *
67082631 CCATGAGTGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTACAT
* * *
67082681 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
67082724 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67082761 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
Found at i:67088135 original size:30 final size:30
Alignment explanation
Indices: 67088101--67088161 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
67088091 TCCTTAACTC
67088101 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
67088131 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
67088161 A
1 A
67088162 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:67091897 original size:27 final size:27
Alignment explanation
Indices: 67091866--67091934 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
67091856 AAATTTGTAC
*
67091866 AGCACTAAG-GTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAG-TAGATTATAT
*
67091893 AGCACTAAGTGTGTGAGTAGATTATAT
1 AGCACTAAGTGTGCGAGTAGATTATAT
67091920 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
67091935 GACTCACTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 32 0.84
28 6 0.16
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTAGATTATAT
Found at i:67091945 original size:27 final size:27
Alignment explanation
Indices: 67091888--67091946 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
67091878 CGAGTTTGAT
* * * *
67091888 TATATAGCACTAAGTGTGTGAGTAGAT
1 TATATAGCACTAAGTGTGGGACTACAC
67091915 TATATAGCACTAAGTGTGCGGACT-CAC
1 TATATAGCACTAAGTGTG-GGACTACAC
67091942 TATAT
1 TATAT
67091947 GCTTTTGAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 24 0.89
28 3 0.11
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (27 bp):
TATATAGCACTAAGTGTGGGACTACAC
Found at i:67100390 original size:27 final size:27
Alignment explanation
Indices: 67100360--67100609 Score: 266
Period size: 27 Copynumber: 9.3 Consensus size: 27
67100350 GGGGCAAAAT
* * *
67100360 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
67100387 GGTAATTCTAGCATATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
67100414 GGTATTTTTACCCTGCAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
67100441 GGTAATTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
67100468 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
67100495 AATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
67100522 GGTAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
67100549 GATAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
67100576 GGTAATTCTATCCTATAGGGGTGTTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
67100603 GGTAATT
1 GGTAATT
67100610 TTGTAAATCG
Statistics
Matches: 184, Mismatches: 39, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 184 1.00
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:67100624 original size:27 final size:27
Alignment explanation
Indices: 67100566--67100825 Score: 204
Period size: 27 Copynumber: 9.7 Consensus size: 27
67100556 CTACCCTACA
* ** *
67100566 AGGGTATTTCGGTAATTCTATCCTATAG
1 AGGGTATTTCGGTAATTTTA-CAAATCG
* **
67100594 -GGGTGTTTCGGTAATTTTGTAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
** * *
67100620 AGGGTAAAAT-AGTAATTTTATAAATCG
1 AGGGT-ATTTCGGTAATTTTACAAATCG
* * * *
67100647 GGGGTACTTCGGTAATTTTACAAGTCA
1 AGGGTATTTCGGTAATTTTACAAATCG
*** ** *
67100674 AAATTATTTTAGTAATTTTAGAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
67100701 -GGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
67100727 GGGGTATTTCGGTAATTTTACAAATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
67100754 AGGGTATTTTGGTAATTTTACAAA-CC
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
67100780 AGGGGTATTTTGGTAATTTTGCTAATCG
1 A-GGGTATTTCGGTAATTTTACAAATCG
*
67100808 AGGGTATTTTGGTAATTT
1 AGGGTATTTCGGTAATTT
67100826 GGTAAACTAA
Statistics
Matches: 184, Mismatches: 42, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
26 27 0.15
27 154 0.84
28 3 0.02
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:67100738 original size:80 final size:81
Alignment explanation
Indices: 67100631--67100825 Score: 257
Period size: 80 Copynumber: 2.4 Consensus size: 81
67100621 GGGTAAAATA
* * * * *
67100631 GTAATTTTATAAATCGGGGGTACTTCGGTAATTTTACAAGTCAAAATTATTTTAGTAATTTTAGA
1 GTAATTTTACAAATCGGGGGTATTTCGGTAATTTTACAAATCAAAAGTATTTTAGTAATTTTACA
*
67100696 AATC-GGGGTATTTCG
66 AACCAGGGGTATTTCG
** *
67100711 GTAATTTTACAAATCGGGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACA
1 GTAATTTTACAAATCGGGGGTATTTCGGTAATTTTACAAATCAAAAGTATTTTAGTAATTTTACA
*
67100776 AACCAGGGGTATTTTG
66 AACCAGGGGTATTTCG
* * * *
67100792 GTAATTTTGCTAATCGAGGGTATTTTGGTAATTT
1 GTAATTTTACAAATCGGGGGTATTTCGGTAATTT
67100826 GGTAAACTAA
Statistics
Matches: 100, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
80 60 0.60
81 40 0.40
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.41
Consensus pattern (81 bp):
GTAATTTTACAAATCGGGGGTATTTCGGTAATTTTACAAATCAAAAGTATTTTAGTAATTTTACA
AACCAGGGGTATTTCG
Found at i:67104718 original size:5 final size:5
Alignment explanation
Indices: 67104708--67104732 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
67104698 TGGCTCATTT
67104708 CTGTC CTGTC CTGTC CTGTC CTGTC
1 CTGTC CTGTC CTGTC CTGTC CTGTC
67104733 AACCCCAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.40, G:0.20, T:0.40
Consensus pattern (5 bp):
CTGTC
Found at i:67115719 original size:27 final size:26
Alignment explanation
Indices: 67115671--67115730 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
67115661 GCGAAGCTGC
*
67115671 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
67115698 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
67115724 CATATAT
1 CAGATAT
67115731 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:67115732 original size:2 final size:2
Alignment explanation
Indices: 67115725--67115756 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
67115715 CCACCAGAAC
67115725 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67115757 GTGTGGCGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:67116524 original size:27 final size:27
Alignment explanation
Indices: 67116494--67116742 Score: 293
Period size: 27 Copynumber: 9.3 Consensus size: 27
67116484 GGGGTAAAAT
* * *
67116494 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
67116521 GGTAATTCTAGCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
67116548 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
67116575 GATAATTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
67116602 GATAATTCTACCCTA-TAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
67116628 AATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
67116655 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
67116682 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
67116709 GGTAATTCTACCCTATAGGGGTGTTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
67116736 GATAATT
1 GGTAATT
67116743 TTGTAAATCG
Statistics
Matches: 195, Mismatches: 26, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 23 0.12
27 172 0.88
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:67116677 original size:107 final size:107
Alignment explanation
Indices: 67116523--67116728 Score: 349
Period size: 107 Copynumber: 1.9 Consensus size: 107
67116513 GGTATCTCGG
* * *
67116523 TAATTCTAGCCTATAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTATCC
1 TAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCC
67116588 TACAAGGGTATTTCGATAATTCTACCCTATAGGGTATTTTAA
66 TACAAGGGTATTTCGATAATTCTACCCTATAGGGTATTTTAA
* *
67116630 TAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
1 TAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCC
* *
67116695 TACAGGGGTATTTCGGTAATTCTACCCTATAGGG
66 TACAAGGGTATTTCGATAATTCTACCCTATAGGG
67116729 GTGTTTCGAT
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
107 92 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.36
Consensus pattern (107 bp):
TAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCC
TACAAGGGTATTTCGATAATTCTACCCTATAGGGTATTTTAA
Found at i:67116872 original size:27 final size:27
Alignment explanation
Indices: 67116765--67116982 Score: 239
Period size: 27 Copynumber: 8.2 Consensus size: 27
67116755 GGTAAAACGA
** *
67116765 TAATTTTGTAAATCG-GGGTACTTTGG
1 TAATTTTACAAATCGAGGGTATTTTGG
* * *
67116791 TAA-TTTACAAGTCGAAGGTATTTTAG
1 TAATTTTACAAATCGAGGGTATTTTGG
*
67116817 TAATTTTACAAATCG-GGGTATTTTAG
1 TAATTTTACAAATCGAGGGTATTTTGG
* * *
67116843 TAATTTTGCAAATCGAAGGTATTTCGG
1 TAATTTTACAAATCGAGGGTATTTTGG
* * *
67116870 TAATTTTACAGATCGGGGGTATTTCGG
1 TAATTTTACAAATCGAGGGTATTTTGG
*
67116897 TAATTTTACAAA-CCAGGGTATTTTGG
1 TAATTTTACAAATCGAGGGTATTTTGG
*
67116923 TAATTTTACAAAT-TAGGGGTATTTTGG
1 TAATTTTACAAATCGA-GGGTATTTTGG
* *
67116950 TAATTTTGCTAATCGAGGGTATTTTGG
1 TAATTTTACAAATCGAGGGTATTTTGG
67116977 TAATTT
1 TAATTT
67116983 GGTAAAATAA
Statistics
Matches: 162, Mismatches: 24, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
25 8 0.05
26 62 0.38
27 91 0.56
28 1 0.01
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGGTATTTTGG
Found at i:67116875 original size:53 final size:53
Alignment explanation
Indices: 67116738--67116982 Score: 260
Period size: 53 Copynumber: 4.6 Consensus size: 53
67116728 GGTGTTTCGA
* **** * ** *
67116738 TAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGGGGTACTTTGG
1 TAATTTTGCAAATCGAGGGTATTTTGGTAATTTTACAAATCGGGGTATTTTGG
* * * * *
67116791 TAA-TTTACAAGTCGAAGGTATTTTAGTAATTTTACAAATCGGGGTATTTTAG
1 TAATTTTGCAAATCGAGGGTATTTTGGTAATTTTACAAATCGGGGTATTTTGG
* * * *
67116843 TAATTTTGCAAATCGAAGGTATTTCGGTAATTTTACAGATCGGGGGTATTTCGG
1 TAATTTTGCAAATCGAGGGTATTTTGGTAATTTTACAAATC-GGGGTATTTTGG
* * *
67116897 TAATTTTACAAA-CCAGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGG
1 TAATTTTGCAAATCGAGGGTATTTTGGTAATTTTACAAA-TCGGGGTATTTTGG
*
67116950 TAATTTTGCTAATCGAGGGTATTTTGGTAATTT
1 TAATTTTGCAAATCGAGGGTATTTTGGTAATTT
67116983 GGTAAAATAA
Statistics
Matches: 157, Mismatches: 31, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
52 38 0.24
53 78 0.50
54 41 0.26
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.40
Consensus pattern (53 bp):
TAATTTTGCAAATCGAGGGTATTTTGGTAATTTTACAAATCGGGGTATTTTGG
Found at i:67116902 original size:80 final size:78
Alignment explanation
Indices: 67116765--67116982 Score: 244
Period size: 80 Copynumber: 2.7 Consensus size: 78
67116755 GGTAAAACGA
* * *
67116765 TAATTTTGTAAATCG-GGGTACTTTGGTAA-TTTACAAGTCGAAGGTATTTTAGTAATTTTACAA
1 TAATTTTGCAAATCGAGGGTA-TTTGGTAATTTTACAA-TCGAGGGTATTTTGGTAATTTTACAA
* *
67116828 ATCGGGGTATTTTAG
64 ACCAGGGTATTTTAG
* * *
67116843 TAATTTTGCAAATCGAAGGTATTTCGGTAATTTTACAGATCGGGGGTATTTCGGTAATTTTACAA
1 TAATTTTGCAAATCGAGGGTATTT-GGTAATTTTACA-ATCGAGGGTATTTTGGTAATTTTACAA
*
67116908 ACCAGGGTATTTTGG
64 ACCAGGGTATTTTAG
* * *
67116923 TAATTTTACAAAT-TAGGGGTATTTTGGTAATTTTGCTAATCGAGGGTATTTTGGTAATTT
1 TAATTTTGCAAATCGA-GGGTA-TTTGGTAATTTTAC-AATCGAGGGTATTTTGGTAATTT
67116983 GGTAAAATAA
Statistics
Matches: 118, Mismatches: 15, Indels: 12
0.81 0.10 0.08
Matches are distributed among these distances:
78 17 0.14
79 10 0.08
80 86 0.73
81 5 0.04
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.41
Consensus pattern (78 bp):
TAATTTTGCAAATCGAGGGTATTTGGTAATTTTACAATCGAGGGTATTTTGGTAATTTTACAAAC
CAGGGTATTTTAG
Found at i:67124956 original size:29 final size:29
Alignment explanation
Indices: 67124922--67125052 Score: 203
Period size: 29 Copynumber: 4.6 Consensus size: 29
67124912 TAATCAGCAG
** *
67124922 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
67124951 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
67124980 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
67125009 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
67125038 CGCACAC-CAGTGCCA
1 CGCACACTTAGTGCCA
67125053 ATCTCTCAAC
Statistics
Matches: 97, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
28 10 0.10
29 87 0.90
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:67126401 original size:11 final size:11
Alignment explanation
Indices: 67126385--67126410 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
67126375 TGTCATCATG
67126385 CATTAACAAGC
1 CATTAACAAGC
67126396 CATTAACAAGC
1 CATTAACAAGC
67126407 CATT
1 CATT
67126411 GATCCCTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.42, C:0.27, G:0.08, T:0.23
Consensus pattern (11 bp):
CATTAACAAGC
Found at i:67134732 original size:22 final size:22
Alignment explanation
Indices: 67134689--67134733 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
67134679 AGTCACTTTG
**
67134689 TTGCAACAAGAGAAGTTTAATA
1 TTGCAACAAGAGAAGTAGAATA
67134711 TTGCAACATAGAG-AGTAGAATA
1 TTGCAACA-AGAGAAGTAGAATA
67134733 T
1 T
67134734 AAGAATTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.44, C:0.09, G:0.20, T:0.27
Consensus pattern (22 bp):
TTGCAACAAGAGAAGTAGAATA
Found at i:67136005 original size:29 final size:28
Alignment explanation
Indices: 67135942--67136062 Score: 93
Period size: 29 Copynumber: 4.2 Consensus size: 28
67135932 AGCATGACTG
* *
67135942 TAAATGTGTTTTGGGGCTAAT-GTCCATA
1 TAAATGTG-ATTGGGGCTAATGGGCCATA
*
67135970 TGAATGTGATTGGGGCCTAATGGGCCATA
1 TAAATGTGATTGGGG-CTAATGGGCCATA
* * * *
67135999 TAAATGTGATTTTGGCCTCATAGGCCATA
1 TAAATGTGA-TTGGGGCTAATGGGCCATA
* * *
67136028 TGAAA-GAGATTGGGGCTAGTGGGCTATA
1 T-AAATGTGATTGGGGCTAATGGGCCATA
*
67136056 TACATGT
1 TAAATGT
67136063 ATGTGGATTT
Statistics
Matches: 71, Mismatches: 17, Indels: 10
0.72 0.17 0.10
Matches are distributed among these distances:
27 8 0.11
28 27 0.38
29 29 0.41
30 7 0.10
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.32
Consensus pattern (28 bp):
TAAATGTGATTGGGGCTAATGGGCCATA
Found at i:67139183 original size:4 final size:5
Alignment explanation
Indices: 67139143--67139182 Score: 59
Period size: 5 Copynumber: 8.6 Consensus size: 5
67139133 CTAAACTCAC
67139143 TTTTA TTTTA TTTTA TTTTA TTTTA -TTTA -TTTA -TTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTT
67139183 AGACATTTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 12 0.35
5 22 0.65
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:67142223 original size:29 final size:29
Alignment explanation
Indices: 67142162--67142267 Score: 153
Period size: 29 Copynumber: 3.7 Consensus size: 29
67142152 GTGTGAGAGC
*
67142162 TGCATGGCACTGAGTGTGC-AGCTTGAAA
1 TGCATGGCACTAAGTGTGCGAGCTTGAAA
67142190 TGCATGGCACTAAGTGTGCGAGCTTGAAA
1 TGCATGGCACTAAGTGTGCGAGCTTGAAA
*
67142219 TGCATGGCACTAAGTGTGCGAG-TTTAAA
1 TGCATGGCACTAAGTGTGCGAGCTTGAAA
**
67142247 GTATATGGCACTAAGTGTGCG
1 -TGCATGGCACTAAGTGTGCG
67142268 CGGCTGATTA
Statistics
Matches: 72, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
28 23 0.32
29 49 0.68
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGCATGGCACTAAGTGTGCGAGCTTGAAA
Found at i:67154192 original size:11 final size:11
Alignment explanation
Indices: 67154178--67154203 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
67154168 GTATATGTAA
67154178 ATCATATGCAC
1 ATCATATGCAC
67154189 ATCATATGCAC
1 ATCATATGCAC
67154200 ATCA
1 ATCA
67154204 GTCATACGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.27, G:0.08, T:0.27
Consensus pattern (11 bp):
ATCATATGCAC
Found at i:67154248 original size:26 final size:26
Alignment explanation
Indices: 67154219--67154275 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
67154209 ACGGAGCACA
*
67154219 AGGGCATAATTGTCATTTTACCATAC
1 AGGGCATAATGGTCATTTTACCATAC
* * *
67154245 AGGGGTATTATGGTCATTTTACCCTAC
1 A-GGGCATAATGGTCATTTTACCATAC
67154272 AGGG
1 AGGG
67154276 GGTATTACGG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 4 0.15
27 22 0.85
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (26 bp):
AGGGCATAATGGTCATTTTACCATAC
Found at i:67154260 original size:27 final size:28
Alignment explanation
Indices: 67154230--67154295 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
67154220 GGGCATAATT
*
67154230 GTCATTTTACCATACA-GGGGTATTATG
1 GTCATTTTACCATACAGGGGGTATTACG
*
67154257 GTCATTTTACCCTACAGGGGGTATTACG
1 GTCATTTTACCATACAGGGGGTATTACG
*
67154285 GACATTTTACC
1 GTCATTTTACC
67154296 TATTTTAGGG
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
27 15 0.43
28 20 0.57
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (28 bp):
GTCATTTTACCATACAGGGGGTATTACG
Found at i:67156853 original size:18 final size:18
Alignment explanation
Indices: 67156826--67156861 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
67156816 TTACCTTTTC
67156826 TTCAGCATCAGAAACTAA
1 TTCAGCATCAGAAACTAA
*
67156844 TTCAGTATCAGAAACTAA
1 TTCAGCATCAGAAACTAA
67156862 CTCTGGCCCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.44, C:0.19, G:0.11, T:0.25
Consensus pattern (18 bp):
TTCAGCATCAGAAACTAA
Found at i:67161912 original size:46 final size:46
Alignment explanation
Indices: 67161862--67162032 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
67161852 TGGTTGAGCA
67161862 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
67161908 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
67161953 CATCC-AACTCGTTGAGTTG-GTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
67161999 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67162033 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 10, Indels: 24
0.75 0.07 0.18
Matches are distributed among these distances:
42 2 0.02
43 6 0.06
45 26 0.25
46 61 0.59
47 3 0.03
48 3 0.03
49 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67162022 original size:91 final size:93
Alignment explanation
Indices: 67161859--67162027 Score: 290
Period size: 91 Copynumber: 1.8 Consensus size: 93
67161849 GGATGGTTGA
*
67161859 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
67161924 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
67161952 GCATCC-AACTCGTTGAGTTG-GTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
67162014 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
67162028 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
90 2 0.03
91 51 0.70
92 14 0.19
93 6 0.08
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:67170845 original size:24 final size:24
Alignment explanation
Indices: 67170818--67170947 Score: 199
Period size: 24 Copynumber: 5.4 Consensus size: 24
67170808 GGAGGAAGTG
67170818 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
67170842 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
67170866 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
67170890 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
67170913 TAAAAGGGATTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
67170937 TAAAAGAGGCT
1 CAAAAG-GGCT
67170948 AGGACTCCAG
Statistics
Matches: 99, Mismatches: 5, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
23 22 0.22
24 74 0.75
25 3 0.03
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:67170918 original size:47 final size:47
Alignment explanation
Indices: 67170818--67170940 Score: 201
Period size: 47 Copynumber: 2.6 Consensus size: 47
67170808 GGAGGAAGTG
*
67170818 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
67170866 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* * *
67170913 TAAAAGGGATTTTGCCCCAGTTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAA
67170941 AGAGGCTAGG
Statistics
Matches: 71, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
47 47 0.66
48 24 0.34
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:67171997 original size:46 final size:46
Alignment explanation
Indices: 67171930--67172102 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
67171920 ACATTGAGCA
67171930 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
67171976 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
67172021 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
67172069 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67172103 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67172086 original size:93 final size:93
Alignment explanation
Indices: 67171927--67172097 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
67171917 GTTACATTGA
* *
67171927 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67171992 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
67172020 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67172085 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
67172098 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:67174621 original size:27 final size:28
Alignment explanation
Indices: 67174579--67174644 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
67174569 TGGCATAATT
67174579 GTCATTTTACCATAC-AGGGGTATTACG
1 GTCATTTTACCATACAAGGGGTATTACG
*
67174606 GTCATTTTACCCTACAAGGGGTATTACG
1 GTCATTTTACCATACAAGGGGTATTACG
*
67174634 ATCATTTTACC
1 GTCATTTTACC
67174645 TATTTTGGGG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 14 0.39
28 22 0.61
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (28 bp):
GTCATTTTACCATACAAGGGGTATTACG
Found at i:67175867 original size:2 final size:2
Alignment explanation
Indices: 67175860--67175901 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
67175850 TGGCTCTTGC
67175860 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67175902 TGCACATGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:67176712 original size:39 final size:40
Alignment explanation
Indices: 67176612--67176796 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
67176602 TCGAATGATG
*
67176612 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAT
* * *
67176651 ATCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAT
* *
67176692 TCGGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
* *
67176731 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTCCT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
* *
67176770 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
67176797 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
Found at i:67176749 original size:79 final size:81
Alignment explanation
Indices: 67176613--67176796 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 81
67176603 CGAATGATGT
*
67176613 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCAGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCAGACTAAGATCCGAAGGCATTT
* *
67176677 GTGCGAGTTACTA-ATT
66 GTGCAAGTTACTATA-A
* * * **
67176693 CGGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCAGACTAAGAT-CCGAAGGCATT
*
67176755 TGTGCAAGTTCCTATAA
65 TGTGCAAGTTACTATAA
*
67176772 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
67176797 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.64
80 31 0.35
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCAGACTAAGATCCGAAGGCATTT
GTGCAAGTTACTATAA
Found at i:67176810 original size:40 final size:40
Alignment explanation
Indices: 67176695--67176810 Score: 112
Period size: 40 Copynumber: 2.9 Consensus size: 40
67176685 TACTAATTCG
**
67176695 GGGCTAAG-CCCGAAGGCATTTGTGCAAGTTA-CTA-AATCC
1 GGGCTAAGTCCCGAAGGCATTTGAACAAG-TACCTATAA-CC
* ** *
67176734 GGGTTAAGTCCCGAAGGCATTTGTGCAAGTTCCTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGAACAAGTACCTATAACC
* * *
67176774 GGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATA
1 GGGCTAAGTCCCGAAGGCATTTGAACAAGTACCTATA
67176811 TCTGGTTAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
39 8 0.12
40 55 0.85
41 2 0.03
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGAACAAGTACCTATAACC
Found at i:67176818 original size:79 final size:79
Alignment explanation
Indices: 67176613--67176829 Score: 174
Period size: 79 Copynumber: 2.7 Consensus size: 79
67176603 CGAATGATGT
** * * * **
67176613 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCAGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-AAGTTACTAAATCCGGGTTAA-ATCCCGAAGGCATT
* *
67176676 TGTGCGAGTTACTAATT
63 TGTGCAAGTTACTAATA
* ** *
67176693 CGGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACAAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
67176758 GCAAGTTCCT-ATAA
66 GCAAGTTACTAAT-A
* * * * *
67176772 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATAT-CTGGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACAAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
67176830 TATGTGATTC
Statistics
Matches: 113, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
78 3 0.03
79 72 0.64
80 38 0.34
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACAAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCAAGTTACTAATA
Found at i:67183556 original size:56 final size:56
Alignment explanation
Indices: 67183465--67183572 Score: 157
Period size: 56 Copynumber: 1.9 Consensus size: 56
67183455 TCTTACATGT
* **
67183465 AATCACATATTGATGCCACTGTCCTAGACAGGGTCTTACTCGCACACATATAGCGG
1 AATCACATATTGATGCCAATGTAATAGACAGGGTCTTACTCGCACACATATAGCGG
67183521 AATCACATATTGATGCCAATGTAATA-A-ATGCGGTCTTACTCGCACACATATA
1 AATCACATATTGATGCCAATGTAATAGACA-G-GGTCTTACTCGCACACATATA
67183573 TCGATGCCAT
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
54 1 0.02
55 2 0.04
56 44 0.94
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (56 bp):
AATCACATATTGATGCCAATGTAATAGACAGGGTCTTACTCGCACACATATAGCGG
Found at i:67185767 original size:27 final size:27
Alignment explanation
Indices: 67185710--67185769 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
67185700 ATACATCTCA
* *
67185710 TAGGGGCATATCAGTCATTTTACCATG
1 TAGGGGCATATCAGTCATTTCACAATG
*
67185737 TAGGGGCATTTCAGTCATTTCATCAAT-
1 TAGGGGCATATCAGTCATTTCA-CAATG
67185764 TAGGGG
1 TAGGGG
67185770 GTCTAGATGC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 26 0.90
28 3 0.10
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (27 bp):
TAGGGGCATATCAGTCATTTCACAATG
Found at i:67186863 original size:16 final size:16
Alignment explanation
Indices: 67186815--67186856 Score: 84
Period size: 16 Copynumber: 2.6 Consensus size: 16
67186805 GTGAAGAAAA
67186815 AGGAAAGAATTGAGAG
1 AGGAAAGAATTGAGAG
67186831 AGGAAAGAATTGAGAG
1 AGGAAAGAATTGAGAG
67186847 AGGAAAGAAT
1 AGGAAAGAAT
67186857 AAGGAGAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.52, C:0.00, G:0.36, T:0.12
Consensus pattern (16 bp):
AGGAAAGAATTGAGAG
Found at i:67190123 original size:46 final size:46
Alignment explanation
Indices: 67189973--67190132 Score: 132
Period size: 46 Copynumber: 3.5 Consensus size: 46
67189963 GCGAACTAAA
* * * * *
67189973 ACTCAACTCAACAAGCTCGGGCGTTCGCATCTATAAGTGAACTCAG
1 ACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGG
* * * * *
67190019 ACTCAACTCAATGAGTTCGGATGCCTAGTT-ACATCTCA-CA---AACTTGG
1 ACTCAACTCAACGAGCTCGGA---C-A-TTCGCATC-CATAAGTGAACTCGG
67190066 ACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGG
1 ACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGG
*
67190112 ACTCAACTCAACGAGTTCGGA
1 ACTCAACTCAACGAGCTCGGA
67190133 TGCCCAAATA
Statistics
Matches: 87, Mismatches: 16, Indels: 22
0.70 0.13 0.18
Matches are distributed among these distances:
42 4 0.05
43 6 0.07
44 1 0.01
46 43 0.49
47 24 0.28
49 1 0.01
50 5 0.06
51 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
ACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGG
Found at i:67192449 original size:40 final size:40
Alignment explanation
Indices: 67192364--67192514 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
67192354 AATTGAATGA
* * *
67192364 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
67192404 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
67192445 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
67192484 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
67192515 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:67192528 original size:40 final size:40
Alignment explanation
Indices: 67192401--67192530 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
67192391 ATGCTGGAAA
* * * *
67192401 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
67192441 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
67192481 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
67192521 TTATATCCGG
1 TTATATCCGG
67192531 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:67203639 original size:40 final size:40
Alignment explanation
Indices: 67203514--67203665 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
67203504 TCGAATGATG
* * *
67203514 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGCT-ACTAAA
* * *
67203554 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACTAAA
* *
67203594 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTA-AA
* * * *
67203635 -CCGGGCTATGTCTCGAAGGCTTTTGAGCGAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
67203666 TCGCTATATC
Statistics
Matches: 92, Mismatches: 15, Indels: 10
0.79 0.13 0.09
Matches are distributed among these distances:
39 1 0.01
40 80 0.87
41 11 0.12
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAA
Found at i:67205241 original size:12 final size:12
Alignment explanation
Indices: 67205224--67205248 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
67205214 GTAGGACGTA
67205224 CAAGACCAGCCC
1 CAAGACCAGCCC
67205236 CAAGACCAGCCC
1 CAAGACCAGCCC
67205248 C
1 C
67205249 CAGATTCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.52, G:0.16, T:0.00
Consensus pattern (12 bp):
CAAGACCAGCCC
Found at i:67211373 original size:79 final size:79
Alignment explanation
Indices: 67211278--67211432 Score: 224
Period size: 79 Copynumber: 2.0 Consensus size: 79
67211268 TCGTTCAAAC
* *
67211278 GCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGG-CTTAACCCGGATATC
67211343 ACAACTT-GCACAATT
65 ACAA-TTCGCACAATT
* * * *
67211358 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGCTTAACCCGGATATCA
67211422 CAATTCGCACA
66 CAATTCGCACA
67211433 TTCATACACA
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
77 2 0.03
78 23 0.34
79 34 0.50
80 9 0.13
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (79 bp):
GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGCTTAACCCGGATATCA
CAATTCGCACAATT
Found at i:67211393 original size:39 final size:40
Alignment explanation
Indices: 67211278--67211432 Score: 206
Period size: 39 Copynumber: 3.9 Consensus size: 40
67211268 TCGTTCAAAC
* * * * * *
67211278 GCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATCACAACTCGCACAATT
* *
67211318 GCCTTCGGGACTTAACCCGGATATCACAACTTGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATCACAACTCGCACAATT
*
67211358 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATCACAACTCGCACAATT
*
67211397 GCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACA
1 GCCTTCGGGACTTAGCCCGGATATCACAACTCGCACA
67211433 TTCATACACA
Statistics
Matches: 102, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 61 0.60
40 41 0.40
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATCACAACTCGCACAATT
Found at i:67221980 original size:40 final size:40
Alignment explanation
Indices: 67221935--67222101 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
67221925 CGGAATATAA
67221935 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
67221975 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
67222015 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
67222055 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
67222094 CCGGATAT
1 CCGGATAT
67222102 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:67222085 original size:80 final size:79
Alignment explanation
Indices: 67221951--67222101 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
67221941 ATAATCACGT
*
67221951 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
67222016 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
67222031 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
67222094 CCGGATAT
64 CCGGATAT
67222102 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:67222950 original size:17 final size:19
Alignment explanation
Indices: 67222927--67222972 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
67222917 AAGAAGCATG
67222927 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
67222945 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
67222963 AATCATGCTC
1 AATCATGCTC
67222973 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:67224643 original size:44 final size:43
Alignment explanation
Indices: 67224492--67224650 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 43
67224482 AGTTCGTAAA
* * *
67224492 ATGCCAACGTCCCAGATGTGGTCTTAGATGT-AATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCAAATAT-G
** * *
67224535 ATGCCATTGTCCCAGACAG-GCTCTTACACG-AAATCAAATACG
1 ATGCCAACGTCCCAGAC-GTGGTCTTACACGTAAATCAAATATG
* * *
67224577 ATGCCGAGGTCCCAGACATGGTCTTACACGTAAATCATAAGT-TG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCA-AA-TATG
*
67224621 ATGCCAACGTCCTAGACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
67224651 AAAACACATA
Statistics
Matches: 93, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
42 25 0.27
43 37 0.40
44 30 0.32
45 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCAAATATG
Found at i:67225269 original size:28 final size:28
Alignment explanation
Indices: 67225221--67225276 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
67225211 CAGTACAATC
*
67225221 TGGGCCTTAGCCCTTAAACAGTAGCAGTG
1 TGGGCCTAAGCCC-TAAACAGTAGCAGTG
*
67225250 TGGGCCTAAGCCC-AATACAGTATCAGT
1 TGGGCCTAAGCCCTAA-ACAGTAGCAGT
67225277 ACAGTGCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 2 0.08
28 10 0.42
29 12 0.50
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (28 bp):
TGGGCCTAAGCCCTAAACAGTAGCAGTG
Found at i:67236191 original size:20 final size:20
Alignment explanation
Indices: 67236166--67236203 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
67236156 GTTTATTCGC
*
67236166 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
67236186 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
67236204 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:67237863 original size:28 final size:28
Alignment explanation
Indices: 67237831--67237899 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
67237821 GCGTAGATCA
67237831 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
67237859 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
67237887 CGATA-TACCCCTA
1 CGAAATTACCCCTA
67237900 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:67244197 original size:20 final size:20
Alignment explanation
Indices: 67244172--67244209 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
67244162 GTTTATTCGC
*
67244172 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
67244192 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
67244210 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:67245869 original size:28 final size:28
Alignment explanation
Indices: 67245837--67245905 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
67245827 GCGTAGATCA
67245837 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
67245865 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
67245893 CGATA-TACCCCTA
1 CGAAATTACCCCTA
67245906 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:67260750 original size:27 final size:27
Alignment explanation
Indices: 67260696--67260803 Score: 132
Period size: 27 Copynumber: 4.0 Consensus size: 27
67260686 AGCATGGCTG
* *
67260696 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
67260722 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
67260749 CCAGAACAGAT-ATATG-GGACAGAGCCA
1 CCAGAACAGATAAT-TGTGG-CAGAGCCA
* * *
67260776 CTAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
67260803 C
1 C
67260804 AGGACGCTTC
Statistics
Matches: 72, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
26 17 0.24
27 51 0.71
28 4 0.06
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:67260786 original size:54 final size:53
Alignment explanation
Indices: 67260696--67260803 Score: 162
Period size: 54 Copynumber: 2.0 Consensus size: 53
67260686 AGCATGGCTG
* *
67260696 CCAGAACAGATAATGTGACAGAGTCACCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATGGGACAGAGCCACCAGAACAGATAATTGTGGCAGAGCCA
* * *
67260749 CCAGAACAGATATATGGGACAGAGCCACTAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGGGACAGAGCCACCAGAACAGATAATTGTGGCAGAGCCA
67260803 C
1 C
67260804 AGGACGCTTC
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
53 12 0.24
54 37 0.76
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.17
Consensus pattern (53 bp):
CCAGAACAGATAATGGGACAGAGCCACCAGAACAGATAATTGTGGCAGAGCCA
Found at i:67262247 original size:24 final size:24
Alignment explanation
Indices: 67262214--67262284 Score: 90
Period size: 24 Copynumber: 3.0 Consensus size: 24
67262204 AACACTGTTC
* *
67262214 TCCCTAATCAGCTCCTAATTCCTA
1 TCCCTTATCAGCTCCTAAATCCTA
* *
67262238 TCCCTTATCAACTCCTAAGTCCTA
1 TCCCTTATCAGCTCCTAAATCCTA
67262262 TCCCTTATC-GACTCCTAAATCCT
1 TCCCTTATCAG-CTCCTAAATCCT
67262285 CTCCTGACAG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.24, C:0.38, G:0.04, T:0.34
Consensus pattern (24 bp):
TCCCTTATCAGCTCCTAAATCCTA
Found at i:67265983 original size:14 final size:14
Alignment explanation
Indices: 67265964--67265998 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
67265954 CAACGACCCA
67265964 AATATAGCACATGC
1 AATATAGCACATGC
67265978 AATATAGCACATGC
1 AATATAGCACATGC
*
67265992 AACATAG
1 AATATAG
67265999 GAATGAGTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.46, C:0.20, G:0.14, T:0.20
Consensus pattern (14 bp):
AATATAGCACATGC
Found at i:67268625 original size:27 final size:27
Alignment explanation
Indices: 67268571--67268680 Score: 152
Period size: 27 Copynumber: 4.1 Consensus size: 27
67268561 AGCATGGCTG
* *
67268571 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
67268597 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
67268624 CCAGAACAGAT-ATATGGGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
67268651 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
67268678 CCA
1 CCA
67268681 AGACGCTTCC
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 15 0.20
27 58 0.77
28 2 0.03
ACGTcount: A:0.37, C:0.23, G:0.25, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:67270127 original size:24 final size:24
Alignment explanation
Indices: 67270095--67270195 Score: 166
Period size: 24 Copynumber: 4.2 Consensus size: 24
67270085 CCAACATTGT
*
67270095 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
67270119 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
67270143 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
67270167 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
67270191 TCTCC
1 TCTCC
67270196 TGACAGACTT
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 74 1.00
ACGTcount: A:0.24, C:0.41, G:0.02, T:0.34
Consensus pattern (24 bp):
TCTCCCTTATCAACTCCTAAATCC
Found at i:67270827 original size:29 final size:27
Alignment explanation
Indices: 67270727--67270874 Score: 181
Period size: 29 Copynumber: 5.4 Consensus size: 27
67270717 ATATATACAT
* * *
67270727 CACAT-AGGGCAAAGCATTCATCTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
67270753 CATATAAGGGCAGAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
67270780 CATATAAAGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
67270807 CACATAAGGGCAAAACACAGTCATTTTAC
1 CACATAAGGGC-AAA-ACAGTCATTTTAC
67270836 CACATAAGGGCAAAACACAGTCATTTTAC
1 CACATAAGGGC-AAA-ACAGTCATTTTAC
67270865 CACATAAGGG
1 CACATAAGGG
67270875 GTCCAAGCAC
Statistics
Matches: 108, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
26 4 0.04
27 49 0.45
28 3 0.03
29 52 0.48
ACGTcount: A:0.40, C:0.22, G:0.16, T:0.23
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:67275909 original size:28 final size:28
Alignment explanation
Indices: 67275844--67275944 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
67275834 ATAGTGAATC
*
67275844 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
67275873 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
67275901 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
67275931 CGCACACTTAGTGC
1 CGCACACTTAGTGC
67275945 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:67283859 original size:28 final size:28
Alignment explanation
Indices: 67283794--67283894 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
67283784 ATAGTGAATC
*
67283794 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
67283823 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
67283851 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
67283881 CGCACACTTAGTGC
1 CGCACACTTAGTGC
67283895 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:67288974 original size:68 final size:67
Alignment explanation
Indices: 67288902--67289051 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
67288892 CATCATGTGT
* * * *
67288902 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
67288964 ATGTAG
62 ATGTAG
** * *
67288970 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
67289035 AG
66 AG
67289037 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
67289052 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:67289007 original size:64 final size:64
Alignment explanation
Indices: 67288926--67289109 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
67288916 AGACATTATG
* *
67288926 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
67288990 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
67289055 AA
63 AA
* * * *
67289057 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
67289110 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:67291522 original size:27 final size:27
Alignment explanation
Indices: 67291479--67291684 Score: 279
Period size: 27 Copynumber: 7.6 Consensus size: 27
67291469 GCGTACCTGA
* * *
67291479 ACCCTCATGTGAAAAAATGACGATATT
1 ACCCTCATGTGATAAAATGATGATTTT
* * *
67291506 GCCCTTATGTGATAAAATGACGATTTT
1 ACCCTCATGTGATAAAATGATGATTTT
67291533 ATCCCT-ATGTGATAAAATGATGATTTT
1 A-CCCTCATGTGATAAAATGATGATTTT
* *
67291560 GCCCTCATGTGATAAAATGACGATTTT
1 ACCCTCATGTGATAAAATGATGATTTT
*
67291587 ACCATCATGTGATAAAATGATGATTTT
1 ACCCTCATGTGATAAAATGATGATTTT
67291614 ACCCTCATGTGATAAAATGATGATTTT
1 ACCCTCATGTGATAAAATGATGATTTT
**
67291641 ACCCTTTTGTGATAAAATGATGATTTT
1 ACCCTCATGTGATAAAATGATGATTTT
* *
67291668 ACCCTTATGGGATAAAA
1 ACCCTCATGTGATAAAA
67291685 CGACCGAAAT
Statistics
Matches: 161, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
26 4 0.02
27 153 0.95
28 4 0.02
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (27 bp):
ACCCTCATGTGATAAAATGATGATTTT
Found at i:67291727 original size:27 final size:27
Alignment explanation
Indices: 67291687--67291754 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 27
67291677 GGATAAAACG
** * * *
67291687 ACCGAAATGTCCTCATATGGTAGTATA
1 ACCGAAATACCCTCATAGGGCAGAATA
* *
67291714 ACCGAAATACCCTCGTAGGGCAGAATG
1 ACCGAAATACCCTCATAGGGCAGAATA
67291741 ACCGAAATATCCCT
1 ACCGAAATA-CCCT
67291755 GTAGGGTAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
27 29 0.88
28 4 0.12
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (27 bp):
ACCGAAATACCCTCATAGGGCAGAATA
Found at i:67291758 original size:27 final size:27
Alignment explanation
Indices: 67291714--67291769 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
67291704 TGGTAGTATA
*
67291714 ACCGAAATACCCTCGTAGGGCAGAATG
1 ACCGAAATACCCTCGTAGGGCAAAATG
*
67291741 ACCGAAATATCCCT-GTAGGGTAAAATG
1 ACCGAAATA-CCCTCGTAGGGCAAAATG
67291768 AC
1 AC
67291770 TATAATACCC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 22 0.85
28 4 0.15
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
ACCGAAATACCCTCGTAGGGCAAAATG
Found at i:67292113 original size:22 final size:23
Alignment explanation
Indices: 67292085--67292127 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
67292075 TATCCCCACA
*
67292085 TGGAGTGTAG-GGCTGGATGGAG
1 TGGAGTGTAGAGGATGGATGGAG
67292107 TGGAGTGTAGAGGATGGATGG
1 TGGAGTGTAGAGGATGGATGG
67292128 GTAGGATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.21, C:0.02, G:0.53, T:0.23
Consensus pattern (23 bp):
TGGAGTGTAGAGGATGGATGGAG
Found at i:67294572 original size:8 final size:8
Alignment explanation
Indices: 67294559--67294584 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
67294549 AAAGCTCCTA
67294559 ACCACTTT
1 ACCACTTT
67294567 ACCACTTT
1 ACCACTTT
67294575 ACCACTTT
1 ACCACTTT
67294583 AC
1 AC
67294585 TCCTTGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.38, G:0.00, T:0.35
Consensus pattern (8 bp):
ACCACTTT
Found at i:67296945 original size:12 final size:12
Alignment explanation
Indices: 67296928--67296955 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
67296918 CGATCCAAGC
67296928 TTTAAAGGAAAT
1 TTTAAAGGAAAT
67296940 TTTAAAGGAAAT
1 TTTAAAGGAAAT
67296952 TTTA
1 TTTA
67296956 CTTCCTCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.14, T:0.39
Consensus pattern (12 bp):
TTTAAAGGAAAT
Found at i:67304110 original size:55 final size:53
Alignment explanation
Indices: 67303984--67304180 Score: 178
Period size: 55 Copynumber: 3.7 Consensus size: 53
67303974 AGGGTTTAAG
* * * * * * * * * *
67303984 GATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTACAAGGTAAG
1 GATACCATGTAAGACCATGTCAAGACATGGCAATGATAACTAC-ATAAGGCAAA
* * *
67304038 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAAA
1 GATACCATGTAAGACCATGTCAAGACATGGCAATGAT-AACTAC-ATAAGGCAAA
* * * * * * *
67304093 GATCCCATGTAAGACCATGCCAAGGCATGGCAATGATGAGTTCATAAGGCAAG
1 GATACCATGTAAGACCATGTCAAGACATGGCAATGATAACTACATAAGGCAAA
*
67304146 GATACCACGTAAGACCATGTCAAGACATGGCAATG
1 GATACCATGTAAGACCATGTCAAGACATGGCAATG
67304181 GTAGGTTTAA
Statistics
Matches: 117, Mismatches: 25, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
53 40 0.34
54 34 0.29
55 43 0.37
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (53 bp):
GATACCATGTAAGACCATGTCAAGACATGGCAATGATAACTACATAAGGCAAA
Found at i:67309638 original size:29 final size:29
Alignment explanation
Indices: 67309604--67309735 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
67309594 TCCTCGATTT
** * *
67309604 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
67309633 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
67309662 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
67309691 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
67309720 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
67309736 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:67318202 original size:21 final size:20
Alignment explanation
Indices: 67318165--67318205 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
67318155 CACTTGAAAC
**
67318165 AAAGGCATACGTTCGTGTGG
1 AAAGGCATACGCCCGTGTGG
67318185 AAAGGCGATACGCCCGTGTGG
1 AAAGGC-ATACGCCCGTGTGG
67318206 CCATTTTGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.24, C:0.20, G:0.37, T:0.20
Consensus pattern (20 bp):
AAAGGCATACGCCCGTGTGG
Found at i:67319356 original size:34 final size:34
Alignment explanation
Indices: 67319313--67319383 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
67319303 AGCATAACTT
67319313 AGTCACTTTCCTTCCTTACTAAACATACAACGTA
1 AGTCACTTTCCTTCCTTACTAAACATACAACGTA
67319347 AGTCACTTTCCTTCCTTACTAAACATACAACGTA
1 AGTCACTTTCCTTCCTTACTAAACATACAACGTA
67319381 AGT
1 AGT
67319384 AAAGCTTGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.32
Consensus pattern (34 bp):
AGTCACTTTCCTTCCTTACTAAACATACAACGTA
Found at i:67334332 original size:44 final size:43
Alignment explanation
Indices: 67334296--67334459 Score: 226
Period size: 43 Copynumber: 3.8 Consensus size: 43
67334286 TTTATTGGAA
* *
67334296 AAAAACGCCGCTAAAGGTCAAG-GTTTTAGCGGCGTTTGTGGTG
1 AAAAGCGCCGCTAAAGGTCAAGCCTTTTAGCGGCGTTTGTGG-G
*
67334339 -AAAGCGCCGCTAAAGGTCAAG-GTTTCTAGCGGCGTTTGTGGGG
1 AAAAGCGCCGCTAAAGGTCAAGCCTTT-TAGCGGCGTTTGT-GGG
* *
67334382 AAAAGCGCCACTAAAGGTCAAGCCTTTTAGCGGCGTTTATGGG
1 AAAAGCGCCGCTAAAGGTCAAGCCTTTTAGCGGCGTTTGTGGG
*
67334425 AAAAGCGCCGCTAAAGGCCAAGCCTTTTAGCGGCG
1 AAAAGCGCCGCTAAAGGTCAAGCCTTTTAGCGGCG
67334460 CTTTTTTTAC
Statistics
Matches: 111, Mismatches: 6, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
42 24 0.22
43 50 0.45
44 34 0.31
45 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.22
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCAAGCCTTTTAGCGGCGTTTGTGGG
Found at i:67334430 original size:87 final size:86
Alignment explanation
Indices: 67334296--67334459 Score: 233
Period size: 87 Copynumber: 1.9 Consensus size: 86
67334286 TTTATTGGAA
* * * *
67334296 AAAAACGCCGCTAAAGGTCAAGGTTTTAGCGGCGTTTGTGGTGAAAGCGCCGCTAAAGGTCAAG-
1 AAAAACGCCACTAAAGGTCAAGCTTTTAGCGGCGTTTATGGTGAAAGCGCCGCTAAAGGCCAAGC
*
67334360 GTTTCTAGCGGCGTTTGTGGGG
66 CTTT-TAGCGGCGTTTGTGGGG
*
67334382 AAAAGCGCCACTAAAGGTCAAGCCTTTTAGCGGCGTTTATGG-GAAAAGCGCCGCTAAAGGCCAA
1 AAAAACGCCACTAAAGGTCAAG-CTTTTAGCGGCGTTTATGGTG-AAAGCGCCGCTAAAGGCCAA
67334446 GCCTTTTAGCGGCG
64 GCCTTTTAGCGGCG
67334460 CTTTTTTTAC
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
86 21 0.30
87 45 0.65
88 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.22
Consensus pattern (86 bp):
AAAAACGCCACTAAAGGTCAAGCTTTTAGCGGCGTTTATGGTGAAAGCGCCGCTAAAGGCCAAGC
CTTTTAGCGGCGTTTGTGGGG
Found at i:67334576 original size:31 final size:31
Alignment explanation
Indices: 67334541--67334616 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 31
67334531 CATTAAATTC
* *
67334541 CAACCAAATACAACAAATATAATATAAAATG
1 CAACCAAAAACAACAAATATAACATAAAATG
* * *
67334572 CAACCAAAAACAGCAAATTTAACATAAAAAATA
1 CAACCAAAAACAACAAATATAACAT--AAAATG
67334605 CAACCAAAAACA
1 CAACCAAAAACA
67334617 TTAATTCTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
31 21 0.55
33 17 0.45
ACGTcount: A:0.63, C:0.20, G:0.03, T:0.14
Consensus pattern (31 bp):
CAACCAAAAACAACAAATATAACATAAAATG
Found at i:67334609 original size:33 final size:31
Alignment explanation
Indices: 67334541--67334616 Score: 89
Period size: 33 Copynumber: 2.4 Consensus size: 31
67334531 CATTAAATTC
* * *
67334541 CAACCAAATACAACAAATATAATATAAAATG
1 CAACCAAAAACAACAAATATAATAAAAAATA
* *
67334572 CAACCAAAAACAGCAAATTTAACATAAAAAATA
1 CAACCAAAAACAACAAATAT-A-ATAAAAAATA
67334605 CAACCAAAAACA
1 CAACCAAAAACA
67334617 TTAATTCTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
31 17 0.45
32 1 0.03
33 20 0.53
ACGTcount: A:0.63, C:0.20, G:0.03, T:0.14
Consensus pattern (31 bp):
CAACCAAAAACAACAAATATAATAAAAAATA
Found at i:67334898 original size:15 final size:16
Alignment explanation
Indices: 67334878--67334908 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
67334868 CTCGCTGCAG
67334878 CTGCTGCCTCC-CTCT
1 CTGCTGCCTCCGCTCT
67334893 CTGCTGCCTCCGCTCT
1 CTGCTGCCTCCGCTCT
67334909 AAGTTGTTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.00, C:0.52, G:0.16, T:0.32
Consensus pattern (16 bp):
CTGCTGCCTCCGCTCT
Found at i:67340393 original size:9 final size:9
Alignment explanation
Indices: 67340379--67340506 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
67340369 ATGTATTAGT
67340379 TAAGTTATG
1 TAAGTTATG
67340388 TAAGTTGTTATG
1 TAA---GTTATG
*
67340400 TACGTTATG
1 TAAGTTATG
*
67340409 TGAGTTATG
1 TAAGTTATG
*
67340418 TAAATTATG
1 TAAGTTATG
67340427 TAAGTTATG
1 TAAGTTATG
*
67340436 TGAGTTATG
1 TAAGTTATG
67340445 TAAGTGGTTATG
1 TAA---GTTATG
*
67340457 TAAATTATG
1 TAAGTTATG
*
67340466 TAAGTTATA
1 TAAGTTATG
*
67340475 TGAGTTATG
1 TAAGTTATG
67340484 TAAGTTATG
1 TAAGTTATG
* *
67340493 TAATTTATT
1 TAAGTTATG
67340502 TAAGT
1 TAAGT
67340507 AATGATCAAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 79 0.82
12 17 0.18
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:67340506 original size:57 final size:57
Alignment explanation
Indices: 67340379--67340506 Score: 166
Period size: 57 Copynumber: 2.2 Consensus size: 57
67340369 ATGTATTAGT
* ** * *
67340379 TAAGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTGGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* * *
67340436 TGAGTTATGTAAGTGGTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATG
1 TAAGTTATGTAAGTGGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* *
67340493 TAATTTATTTAAGT
1 TAAGTTATGTAAGT
67340507 AATGATCAAT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.46
Consensus pattern (57 bp):
TAAGTTATGTAAGTGGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
Found at i:67341211 original size:373 final size:373
Alignment explanation
Indices: 67340526--67341273 Score: 1442
Period size: 373 Copynumber: 2.0 Consensus size: 373
67340516 TATTAATACT
* * *
67340526 TTTTGATAAAAATTAGTTATAACTTTTAAAGACATTTAAAATTATTAAATATTAAAATCAAACAT
1 TTTTGATAAAAATTAGTTATAACTTTTAAAGACATTTAAAAATACTAAATATTAAAATAAAACAT
67340591 TATTAATATAAAAAAATAGTAATTTGAATATAATAACATCAAAAAAGAATCGTAGTTTAATTTTT
66 TATTAATATAAAAAAATAGTAATTTGAATATAATAACATCAAAAAAGAATCGTAGTTTAATTTTT
67340656 ATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATGAGCTCGATAGAACT
131 ATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATGAGCTCGATAGAACT
*
67340721 TTTTTCAAGTCTTTTTTAATTTTTTAAGATTAATCATACGTGGCGTTGTTACACCTAGGGAGGAT
196 TTTTTCAAGTCTTTTTGAATTTTTTAAGATTAATCATACGTGGCGTTGTTACACCTAGGGAGGAT
67340786 CCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCT
261 CCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCT
*
67340851 TTAAAATATTTAAAATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAA
326 TTAAAATATTTAAAATAAGGTTGGAGAGAAAGTCAGCTATTGTTGTAA
67340899 TTTTGATAAAAATTAGTTATAACTTTTAAAGACATTTAAAAATACTAAATATTAAAATAAAACAT
1 TTTTGATAAAAATTAGTTATAACTTTTAAAGACATTTAAAAATACTAAATATTAAAATAAAACAT
67340964 TATTAATATAAAAAAATAGTAATTTGAATATAATAACATCAAAAAAGAATCGTAGTTTAATTTTT
66 TATTAATATAAAAAAATAGTAATTTGAATATAATAACATCAAAAAAGAATCGTAGTTTAATTTTT
67341029 ATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATGAGCTCGATAGAACT
131 ATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATGAGCTCGATAGAACT
*
67341094 TTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGAT
196 TTTTTCAAGTCTTTTTGAATTTTTTAAGATTAATCATACGTGGCGTTGTTACACCTAGGGAGGAT
67341159 CCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCT
261 CCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCT
67341224 TTAAAATATTTAAAATAAGGTTGGAGAGAAAGTCAGCTATTGTTGTAA
326 TTAAAATATTTAAAATAAGGTTGGAGAGAAAGTCAGCTATTGTTGTAA
67341272 TT
1 TT
67341274 GTAATGGACA
Statistics
Matches: 369, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
373 369 1.00
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (373 bp):
TTTTGATAAAAATTAGTTATAACTTTTAAAGACATTTAAAAATACTAAATATTAAAATAAAACAT
TATTAATATAAAAAAATAGTAATTTGAATATAATAACATCAAAAAAGAATCGTAGTTTAATTTTT
ATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATGAGCTCGATAGAACT
TTTTTCAAGTCTTTTTGAATTTTTTAAGATTAATCATACGTGGCGTTGTTACACCTAGGGAGGAT
CCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCT
TTAAAATATTTAAAATAAGGTTGGAGAGAAAGTCAGCTATTGTTGTAA
Found at i:67343644 original size:20 final size:20
Alignment explanation
Indices: 67343619--67343658 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
67343609 GATCTTGCAG
*
67343619 GGGATCATATAAGCATCAAA
1 GGGATCACATAAGCATCAAA
*
67343639 GGGATCACCTAAGCATCAAA
1 GGGATCACATAAGCATCAAA
67343659 TCAGCCATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.20, G:0.20, T:0.17
Consensus pattern (20 bp):
GGGATCACATAAGCATCAAA
Found at i:67345534 original size:15 final size:15
Alignment explanation
Indices: 67345514--67345545 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
67345504 AAATAATAAT
*
67345514 TTATATATATTTATC
1 TTATATACATTTATC
67345529 TTATATACATTTATC
1 TTATATACATTTATC
67345544 TT
1 TT
67345546 CTACATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:67345996 original size:20 final size:18
Alignment explanation
Indices: 67345970--67346020 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
67345960 TTACACCCTA
67345970 AATATATATTATAA-TCTT
1 AATATATATTATAAGT-TT
*
67345988 AATATATATTAGAAGTTT
1 AATATATATTATAAGTTT
67346006 AATATATATATATAA
1 AATATATAT-TATAA
67346021 CAAGGGACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 24 0.83
19 5 0.17
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (18 bp):
AATATATATTATAAGTTT
Found at i:67346432 original size:42 final size:41
Alignment explanation
Indices: 67346319--67346508 Score: 308
Period size: 41 Copynumber: 4.6 Consensus size: 41
67346309 TTACTTTTTT
67346319 GCGGCGTTTTTTCAAAAGCGCCGCTAAAACCTCGACCTATA
1 GCGGCGTTTTTTCAAAAGCGCCGCTAAAACCTCGACCTATA
*
67346360 GCGGCATTTTTTCAAAAGCGCCGCTAAAACCTCGACCTATA
1 GCGGCGTTTTTTCAAAAGCGCCGCTAAAACCTCGACCTATA
* *
67346401 GCGGCGTTTTTTCAAAATCGCCACTAAAAACCTCGACCTATA
1 GCGGCGTTTTTTCAAAAGCGCCGCT-AAAACCTCGACCTATA
*
67346443 GTGGCGTTTTTTCAAAAGCGCCGCTAAAACCTCGACCTATA
1 GCGGCGTTTTTTCAAAAGCGCCGCTAAAACCTCGACCTATA
* * *
67346484 GCGGCGTTTTTCCCAAAGCACCGCT
1 GCGGCGTTTTTTCAAAAGCGCCGCT
67346509 GTTGTTCAGT
Statistics
Matches: 137, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
41 99 0.72
42 38 0.28
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (41 bp):
GCGGCGTTTTTTCAAAAGCGCCGCTAAAACCTCGACCTATA
Found at i:67346457 original size:83 final size:82
Alignment explanation
Indices: 67346319--67346494 Score: 307
Period size: 83 Copynumber: 2.1 Consensus size: 82
67346309 TTACTTTTTT
*
67346319 GCGGCGTTTTTTCAAAAGCGCCGCTAAAACCTCGACCTATAGCGGCATTTTTTCAAAAGCGCCGC
1 GCGGCGTTTTTTCAAAAGCGCCACTAAAACCTCGACCTATAGCGGCATTTTTTCAAAAGCGCCGC
67346384 TAAAACCTCGACCTATA
66 TAAAACCTCGACCTATA
* * *
67346401 GCGGCGTTTTTTCAAAATCGCCACTAAAAACCTCGACCTATAGTGGCGTTTTTTCAAAAGCGCCG
1 GCGGCGTTTTTTCAAAAGCGCCACT-AAAACCTCGACCTATAGCGGCATTTTTTCAAAAGCGCCG
67346466 CTAAAACCTCGACCTATA
65 CTAAAACCTCGACCTATA
67346484 GCGGCGTTTTT
1 GCGGCGTTTTT
67346495 CCCAAAGCAC
Statistics
Matches: 89, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
82 23 0.26
83 66 0.74
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (82 bp):
GCGGCGTTTTTTCAAAAGCGCCACTAAAACCTCGACCTATAGCGGCATTTTTTCAAAAGCGCCGC
TAAAACCTCGACCTATA
Found at i:67346561 original size:41 final size:42
Alignment explanation
Indices: 67346504--67346614 Score: 156
Period size: 40 Copynumber: 2.7 Consensus size: 42
67346494 TCCCAAAGCA
* *
67346504 CCGCTGTTGTTCAGTTTTTAGCGGCGTTTTGGA-CAAAAACG
1 CCGCTATTGCTCAGTTTTTAGCGGCGTTTTGGATCAAAAACG
67346545 CCGCTATTGCTCAG-TTTTAGCGGCG-TTTGGATCAAAAACG
1 CCGCTATTGCTCAGTTTTTAGCGGCGTTTTGGATCAAAAACG
* * *
67346585 CCGCTATTGCTCTGTTTTTACCGGTGTTTT
1 CCGCTATTGCTCAGTTTTTAGCGGCGTTTT
67346615 ATTGAAAACG
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
39 6 0.10
40 32 0.52
41 21 0.34
42 3 0.05
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.37
Consensus pattern (42 bp):
CCGCTATTGCTCAGTTTTTAGCGGCGTTTTGGATCAAAAACG
Found at i:67347648 original size:27 final size:27
Alignment explanation
Indices: 67347618--67347709 Score: 132
Period size: 27 Copynumber: 3.4 Consensus size: 27
67347608 TTTACCAAAG
* * *
67347618 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
67347645 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCGTTT
67347672 TACCCTC-AGTTTACAAAATTACCGTTT
1 TACCCTCGA-TTTACAAAATTACCGTTT
67347699 TACCCTCGATT
1 TACCCTCGATT
67347710 GTGAAATTAC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
26 1 0.02
27 56 0.97
28 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:67347651 original size:54 final size:53
Alignment explanation
Indices: 67347593--67347717 Score: 128
Period size: 54 Copynumber: 2.3 Consensus size: 53
67347583 TATTGAAATG
* * *
67347593 CCCTCGACTTGTAAATTTACCAAAGTACCCTC-GATTTATAGAATTATCGTTTTA
1 CCCTCGA-TTGTAAATTTACCAAAGTACCCTCAG-TTTACAAAATTACCGTTTTA
* ***
67347647 CCCTCGATT-TACAAAATTACCATTTTACCCTCAGTTTACAAAATTACCGTTTTA
1 CCCTCGATTGT--AAATTTACCAAAGTACCCTCAGTTTACAAAATTACCGTTTTA
67347701 CCCTCGATTGTGAAATT
1 CCCTCGATTGT-AAATT
67347718 ACTGAAATAC
Statistics
Matches: 58, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
52 1 0.02
53 2 0.03
54 53 0.91
55 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.10, T:0.37
Consensus pattern (53 bp):
CCCTCGATTGTAAATTTACCAAAGTACCCTCAGTTTACAAAATTACCGTTTTA
Found at i:67347859 original size:26 final size:27
Alignment explanation
Indices: 67347741--67347890 Score: 164
Period size: 27 Copynumber: 5.6 Consensus size: 27
67347731 TATAGGATAG
67347741 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
67347768 AATTACGAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
67347795 AATTACCGAAATACCACTTGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
67347822 AATTA-CATAAAT--CCCTCAATTTGTAA
1 AATTACCA-AAATACCCCT-AGTTTGTAA
* **
67347848 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAGTTTGTAA
67347875 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
67347891 TTGACTTTCT
Statistics
Matches: 104, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
25 3 0.03
26 18 0.17
27 79 0.76
28 4 0.04
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:67347861 original size:53 final size:54
Alignment explanation
Indices: 67347741--67347890 Score: 164
Period size: 53 Copynumber: 2.8 Consensus size: 54
67347731 TATAGGATAG
* *
67347741 AATTACCAAAATACCCCTAGTTTGTAAAATTACGAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCACTAGTTTGTAAAATTACGAAAATACCCCTAATTTGTAA
* * *
67347795 AATTACCGAAATACCACTTGTTTGTGAAATTAC-ATAAAT--CCCTCAATTTGTAA
1 AATTACCAAAATACCACTAGTTTGTAAAATTACGA-AAATACCCCT-AATTTGTAA
* * **
67347848 AATTACCAAAATACCCCTAATTTACAAAATTAC-AGAAATACCC
1 AATTACCAAAATACCACTAGTTTGTAAAATTACGA-AAATACCC
67347891 TTGACTTTCT
Statistics
Matches: 79, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
52 4 0.05
53 40 0.51
54 33 0.42
55 2 0.03
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.29
Consensus pattern (54 bp):
AATTACCAAAATACCACTAGTTTGTAAAATTACGAAAATACCCCTAATTTGTAA
Found at i:67347905 original size:29 final size:27
Alignment explanation
Indices: 67347846--67347953 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
67347836 CTCAATTTGT
* **
67347846 AAAATTACCA-AAATACCCCTAATTTAC
1 AAAATTA-CAGAAATACCCTTGGTTTAC
*
67347873 AAAATTACAGAAATACCCTTGACTTT-C
1 AAAATTACAGAAATACCCTTG-GTTTAC
* *
67347900 TAAAAATTATAGAAATACCATTGGTTTAC
1 --AAAATTACAGAAATACCCTTGGTTTAC
*
67347929 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACAGAAATACCCTTGGTTT
67347954 GTAGATTTAC
Statistics
Matches: 67, Mismatches: 9, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
26 2 0.03
27 39 0.58
28 6 0.09
29 20 0.30
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (27 bp):
AAAATTACAGAAATACCCTTGGTTTAC
Found at i:67348071 original size:27 final size:27
Alignment explanation
Indices: 67348007--67348071 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
67347997 ACCCCTAATA
*
67348007 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * * *
67348034 GGTACAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
67348061 GGTAAAATGAC
1 GGTAAAATGAC
67348072 GAATATGCCC
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
27 29 0.97
28 1 0.03
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:67348902 original size:24 final size:26
Alignment explanation
Indices: 67348870--67348925 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
67348860 AGGACGTGCT
*
67348870 AAAAGGGCTCT-ACCCAGTTTA-CCG
1 AAAAGGGCTCTGACCCAGTTTATCAG
* *
67348894 AAAAGGGCTTTGCCCCAGTTTATCAG
1 AAAAGGGCTCTGACCCAGTTTATCAG
67348920 AAAAGG
1 AAAAGG
67348926 CTTTGCCCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 10 0.37
25 9 0.33
26 8 0.30
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.21
Consensus pattern (26 bp):
AAAAGGGCTCTGACCCAGTTTATCAG
Found at i:67348915 original size:25 final size:25
Alignment explanation
Indices: 67348882--67348935 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
67348872 AAGGGCTCTA
*
67348882 CCCAGTTTA-CCGAAAAGGGCTTTGC
1 CCCAGTTTATCAGAAAA-GGCTTTGC
67348907 CCCAGTTTATCAGAAAAGGCTTTGC
1 CCCAGTTTATCAGAAAAGGCTTTGC
67348932 CCCA
1 CCCA
67348936 ATTATTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 21 0.78
26 6 0.22
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (25 bp):
CCCAGTTTATCAGAAAAGGCTTTGC
Found at i:67348950 original size:24 final size:25
Alignment explanation
Indices: 67348894--67348951 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
67348884 CAGTTTACCG
*
67348894 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAGATTATC
*
67348918 AGAAA-AGGCTTTGCCCCA-ATTATT
1 A-AAAGAGGCTTTGCCCCAGATTATC
67348942 AAAAGAGGCT
1 AAAAGAGGCT
67348952 AGGCCTCCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
23 3 0.10
24 11 0.38
25 15 0.52
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGATTATC
Found at i:67351826 original size:37 final size:36
Alignment explanation
Indices: 67351775--67351844 Score: 88
Period size: 37 Copynumber: 1.9 Consensus size: 36
67351765 ATTCCAAAAA
*
67351775 TAATATTATTTTAATAAT-TTAATATTAAATTAAATT
1 TAATATTATCTTAATAATGTT-ATATTAAATTAAATT
* *
67351811 TAATACTTATCTTAATAGTGTTATATTAATTTAA
1 TAATA-TTATCTTAATAATGTTATATTAAATTAA
67351845 TATTATGTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
36 5 0.17
37 22 0.76
38 2 0.07
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (36 bp):
TAATATTATCTTAATAATGTTATATTAAATTAAATT
Found at i:67353935 original size:34 final size:34
Alignment explanation
Indices: 67353889--67353981 Score: 114
Period size: 34 Copynumber: 2.7 Consensus size: 34
67353879 AAATACATTA
* *
67353889 TGGGCCTAAGCCCATATCAATAATAGTAGCAGTC
1 TGGGCCTTAGCCCATATCAATAACAGTAGCAGTC
* * *
67353923 TGGGCCTTAGCCCATTTCAGTAACAGTAGCGGTC
1 TGGGCCTTAGCCCATATCAATAACAGTAGCAGTC
* * *
67353957 TGGGCTTTAGCCCATTTCAGTAACA
1 TGGGCCTTAGCCCATATCAATAACA
67353982 TCAATCAGTG
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 53 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.27
Consensus pattern (34 bp):
TGGGCCTTAGCCCATATCAATAACAGTAGCAGTC
Found at i:67355737 original size:40 final size:39
Alignment explanation
Indices: 67355577--67355770 Score: 289
Period size: 39 Copynumber: 4.9 Consensus size: 39
67355567 TGTGTATGAA
*
67355577 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
67355616 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
67355655 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
67355694 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
* * * * *
67355734 TGTGCGGGTTATCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGC
67355771 GTTTGAATGA
Statistics
Matches: 143, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 101 0.71
40 42 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:67355797 original size:79 final size:78
Alignment explanation
Indices: 67355594--67355808 Score: 236
Period size: 78 Copynumber: 2.7 Consensus size: 78
67355584 ATTGTGATAT
** * *
67355594 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATTGTG
* *
67355659 CGAGTTATGATAT
66 CGAGTTATCATAA
** * *
67355672 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAG-CCCGAAGGCAATTGT
*
67355737 GCGGGTTATCATAA
65 GCGAGTTATCATAA
* ** * *
67355751 CCGGGCTATGTCCCGAAGGCGTTTGAATGAGTAGCT-ATATCC-GGTTAAACTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGGGTTAAGC-CCGAAGG
67355809 TATGTGATTT
Statistics
Matches: 120, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
78 49 0.41
79 47 0.39
80 23 0.19
81 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATTGTG
CGAGTTATCATAA
Found at i:67363641 original size:40 final size:39
Alignment explanation
Indices: 67363481--67363674 Score: 289
Period size: 39 Copynumber: 4.9 Consensus size: 39
67363471 TGTGTATGAA
*
67363481 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
67363520 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
67363559 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
67363598 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
* * * * *
67363638 TGTGCGGGTTATCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGC
67363675 GTTTGAACGA
Statistics
Matches: 143, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 101 0.71
40 42 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:67363701 original size:79 final size:78
Alignment explanation
Indices: 67363498--67363712 Score: 245
Period size: 78 Copynumber: 2.7 Consensus size: 78
67363488 ATTGTGATAT
** * *
67363498 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATTGTG
* *
67363563 CGAGTTATGATAT
66 CGAGTTATCATAA
** * *
67363576 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAG-CCCGAAGGCAATTGT
*
67363641 GCGGGTTATCATAA
65 GCGAGTTATCATAA
* ** *
67363655 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCC-GGTTAAACTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGGGTTAAGC-CCGAAGG
67363713 TATGTGATTT
Statistics
Matches: 121, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
78 49 0.40
79 47 0.39
80 24 0.20
81 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATTGTG
CGAGTTATCATAA
Found at i:67365518 original size:27 final size:27
Alignment explanation
Indices: 67365436--67365520 Score: 118
Period size: 27 Copynumber: 3.1 Consensus size: 27
67365426 TACCTTACAG
* *
67365436 TTTACGCTATAGGGGTATTTTGGTCAT
1 TTTACCCTATAGGGGTATTTCGGTCAT
*
67365463 TCTACCCTAT-GAGGGTATTTCGGTCAT
1 TTTACCCTATAG-GGGTATTTCGGTCAT
*
67365490 TTTACCCTATAGGGGTATTTCGATCAT
1 TTTACCCTATAGGGGTATTTCGGTCAT
67365517 TTTA
1 TTTA
67365521 TCACATAAGG
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
26 1 0.02
27 49 0.96
28 1 0.02
ACGTcount: A:0.20, C:0.16, G:0.21, T:0.42
Consensus pattern (27 bp):
TTTACCCTATAGGGGTATTTCGGTCAT
Found at i:67365694 original size:27 final size:27
Alignment explanation
Indices: 67365512--67365693 Score: 274
Period size: 27 Copynumber: 6.7 Consensus size: 27
67365502 GGGTATTTCG
67365512 ATCATTTTATCACATAAGGGCAAAATC
1 ATCATTTTATCACATAAGGGCAAAATC
* *
67365539 ATTATTTTATCACATAAGGGAAAAATC
1 ATCATTTTATCACATAAGGGCAAAATC
* *
67365566 ATCATTTTATCACATGAGGGCAAAGTC
1 ATCATTTTATCACATAAGGGCAAAATC
* *
67365593 GTCATTTTATCACATAAGGGCAAAATT
1 ATCATTTTATCACATAAGGGCAAAATC
*
67365620 GTCATTTTATCACATAAGGGCAAAATC
1 ATCATTTTATCACATAAGGGCAAAATC
*
67365647 ATCATTTTATCACATAAGGGTAAAATC
1 ATCATTTTATCACATAAGGGCAAAATC
* *
67365674 GTCATTTTATCACATGAGGG
1 ATCATTTTATCACATAAGGG
67365694 TTCAGGTACG
Statistics
Matches: 140, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (27 bp):
ATCATTTTATCACATAAGGGCAAAATC
Done.