Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 238 of 444
Found at i:67369317 original size:22 final size:22
Alignment explanation
Indices: 67369292--67369333 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
67369282 GTGGGGAAGT
*
67369292 GTGGGAGCAAATTAAGGGATAA
1 GTGGAAGCAAATTAAGGGATAA
* *
67369314 GTGGAAGGAAATTAGGGGAT
1 GTGGAAGCAAATTAAGGGAT
67369334 TATGGGGGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.38, C:0.02, G:0.40, T:0.19
Consensus pattern (22 bp):
GTGGAAGCAAATTAAGGGATAA
Found at i:67371465 original size:39 final size:39
Alignment explanation
Indices: 67371355--67371537 Score: 260
Period size: 39 Copynumber: 4.6 Consensus size: 39
67371345 TCGTTCAAAC
* * * *
67371355 GCCTTCGGGACATAGCCC-GATTATGATAACCCGCACAAAT
1 GCCTTCGGG-CTTAGCCCGGA-TATCATAACTCGCACAATT
* * *
67371395 GCCTTCGGGACCTAACCCGGATATCACAACTCGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
67371435 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
*
67371474 GCCTTCGGGCTTAGCCCGGATATCATAATTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
67371513 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
67371538 CTCGAACATT
Statistics
Matches: 132, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 90 0.68
40 40 0.30
41 2 0.02
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:67376006 original size:18 final size:18
Alignment explanation
Indices: 67375983--67376019 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
67375973 TAGATATAGG
*
67375983 ATCCACTTACTCCTATAT
1 ATCCACCTACTCCTATAT
67376001 ATCCACCTACTCCTATAT
1 ATCCACCTACTCCTATAT
67376019 A
1 A
67376020 GCCTGTATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.30, C:0.35, G:0.00, T:0.35
Consensus pattern (18 bp):
ATCCACCTACTCCTATAT
Found at i:67387470 original size:46 final size:46
Alignment explanation
Indices: 67387403--67387577 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
67387393 TGTAACCTGC
67387403 CCATAAGTGAACTCGGACTCAACTTAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTTAACGAGCTCGGGCATTCGCAT
* *
67387449 CCATAAGTGAACTCGGACTCAACTTACCGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTTAACGAGCTCGG--G-C-A-TTCGCAT
* * * * * *
67387499 -C-TCA-CGAACTCAGACTCAACTCAACGAGCCCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTTAACGAGCTCGGGCATTCGCAT
*
67387542 CCATAAGTGAACTCGAACTCAACTTAACGAGCTCGG
1 CCATAAGTGAACTCGGACTCAACTTAACGAGCTCGG
67387578 ATAACTAAAT
Statistics
Matches: 104, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 59 0.57
47 24 0.23
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTTAACGAGCTCGGGCATTCGCAT
Found at i:67387527 original size:93 final size:93
Alignment explanation
Indices: 67387411--67387579 Score: 284
Period size: 93 Copynumber: 1.8 Consensus size: 93
67387401 GCCCATAAGT
* * * * * *
67387411 GAACTCGGACTCAACTTAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTTAC
1 GAACTCAGACTCAACTCAACGAGCCCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTTAA
67387476 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
67387504 GAACTCAGACTCAACTCAACGAGCCCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTTAA
1 GAACTCAGACTCAACTCAACGAGCCCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTTAA
67387569 CGAGCTCGGAT
66 CGAGCTCGGAT
67387580 AACTAAATAT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCCCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTTAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:67391598 original size:41 final size:41
Alignment explanation
Indices: 67391553--67391670 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
67391543 TGAAAGATAA
67391553 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
67391594 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67391624 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67391665 ATGTAG
1 ATGTAG
67391671 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:67391609 original size:71 final size:71
Alignment explanation
Indices: 67391521--67391683 Score: 326
Period size: 71 Copynumber: 2.3 Consensus size: 71
67391511 AAGATGTATC
67391521 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67391586 AGGACA
66 AGGACA
67391592 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67391657 AGGACA
66 AGGACA
67391663 CCATGTAGACAAGAGAGCTAC
1 CCATGTAGACAAGAGAGCTAC
67391684 AAGACAAATC
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:67394981 original size:23 final size:23
Alignment explanation
Indices: 67394954--67395011 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
67394944 ATGTTTACCG
67394954 CTATTAGCAGCTTTACTGCATTA
1 CTATTAGCAGCTTTACTGCATTA
* *
67394977 CTATTAGTAGCTTTACTGCGTTA
1 CTATTAGCAGCTTTACTGCATTA
67395000 CTATTAGCAGCT
1 CTATTAGCAGCT
67395012 ATGCTGTGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.40
Consensus pattern (23 bp):
CTATTAGCAGCTTTACTGCATTA
Found at i:67397204 original size:22 final size:20
Alignment explanation
Indices: 67397165--67397218 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 20
67397155 TGGGGAAGTG
*
67397165 TGGGAGCAAATTTAGGGATAAA
1 TGGGAG-AAAATTAGGGAT-AA
*
67397187 TGGGAGAAAATTAGGGGATTA
1 TGGGAGAAAATTA-GGGATAA
*
67397208 TGGGGGAAAAT
1 TGGGAGAAAAT
67397219 ATCCAGAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 17 0.61
22 11 0.39
ACGTcount: A:0.39, C:0.02, G:0.37, T:0.22
Consensus pattern (20 bp):
TGGGAGAAAATTAGGGATAA
Found at i:67398121 original size:17 final size:18
Alignment explanation
Indices: 67398099--67398132 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
67398089 TTGTGGGTTG
67398099 TGTGGG-CCACAAGGGCA
1 TGTGGGTCCACAAGGGCA
*
67398116 TGTGGGTCCACACGGGC
1 TGTGGGTCCACAAGGGC
67398133 TGACAACATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.18, C:0.26, G:0.41, T:0.15
Consensus pattern (18 bp):
TGTGGGTCCACAAGGGCA
Found at i:67403020 original size:13 final size:13
Alignment explanation
Indices: 67402983--67403026 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
67402973 TGACCCTCTT
*
67402983 ATTAAACATAAAA
1 ATTAAAAATAAAA
* **
67402996 TTTAAATGTAAAA
1 ATTAAAAATAAAA
67403009 ATTAAAAATAAAA
1 ATTAAAAATAAAA
67403022 ATTAA
1 ATTAA
67403027 CATTCCTTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (13 bp):
ATTAAAAATAAAA
Found at i:67405100 original size:16 final size:16
Alignment explanation
Indices: 67405079--67405110 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
67405069 GGGAGAAAGA
67405079 GAAAAATGGTTTCTAT
1 GAAAAATGGTTTCTAT
67405095 GAAAAATGGTTTCTAT
1 GAAAAATGGTTTCTAT
67405111 CTCTCTGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.19, T:0.38
Consensus pattern (16 bp):
GAAAAATGGTTTCTAT
Found at i:67418058 original size:40 final size:40
Alignment explanation
Indices: 67417954--67418136 Score: 264
Period size: 40 Copynumber: 4.6 Consensus size: 40
67417944 GGATGATAAC
* * *
67417954 CGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTA-ATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
*
67417993 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTATTATATT
1 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
*
67418033 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
* *
67418073 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTGTA-A
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
67418112 CAGGGCTAAGTCCCGAAGGCATTTG
1 C-GGGCTAAGTCCCGAAGGCATTTG
67418137 AGCAAGTAGC
Statistics
Matches: 132, Mismatches: 8, Indels: 6
0.90 0.05 0.04
Matches are distributed among these distances:
39 32 0.24
40 100 0.76
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
Found at i:67418124 original size:80 final size:79
Alignment explanation
Indices: 67417949--67418169 Score: 279
Period size: 79 Copynumber: 2.8 Consensus size: 79
67417939 TATTCGGATG
* * *
67417949 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAG-CCCGAAGGC
1 ATAA-CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA-TCCGGGCTAAGTCCCGAAGGC
*
67418012 ATTTGTGCGAGTTATT
64 ATTTGTGCGAGTTACT
* *
67418028 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATA-ACGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
67418093 TTTGTGCGAGTTACT
65 TTTGTGCGAGTTACT
* * * *
67418108 GTAACAGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATATCC-GGCTAAATTCCGAAGG
1 ATAAC-GGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
67418170 TACTTGGTTT
Statistics
Matches: 126, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
79 64 0.51
80 62 0.49
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
ATAACGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:67421884 original size:40 final size:40
Alignment explanation
Indices: 67421717--67421881 Score: 224
Period size: 40 Copynumber: 4.1 Consensus size: 40
67421707 TCGGCTTTAA
** *
67421717 CCGGATATAGCCACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* ** *
67421757 CTGGATATAGTAGTTCGCACAAATGCCTTCGGGACTTATC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
67421797 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
67421837 CCGGA-ATTAGTAACTCGCGCAAATGCCTTCCGGACATAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
67421877 CCGGA
1 CCGGA
67421882 ATTTGTCATT
Statistics
Matches: 110, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
39 1 0.01
40 109 0.99
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:67421900 original size:24 final size:24
Alignment explanation
Indices: 67421868--67421913 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
67421858 AATGCCTTCC
*
67421868 GGACATAGCCCGGAATTTGTCATT
1 GGACATAGCCCGGAATTAGTCATT
* *
67421892 GGACTTAGCCTGGAATTAGTCA
1 GGACATAGCCCGGAATTAGTCA
67421914 CTAGCACAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (24 bp):
GGACATAGCCCGGAATTAGTCATT
Found at i:67429815 original size:40 final size:40
Alignment explanation
Indices: 67429769--67429969 Score: 262
Period size: 40 Copynumber: 5.0 Consensus size: 40
67429759 GCTTTAGCCA
** *
67429769 GATATAGCCACTCGCTCAAATGCCTTCGGGACTTAGCCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
**
67429809 GATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGCCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
**
67429849 GATATAGTAACTCGCACAAATGCCTTCCAGACTTAGCCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
* *
67429889 GA-ATTTGTAACTCGCACAAATGCCTTCCGGACTTAGCCCG
1 GATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
* * *
67429929 GA-ATTTGTCACTAGCACAAATGCCTTCGGGACTTAGCCCG
1 GATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
67429969 G
1 G
67429970 TTATCATCCG
Statistics
Matches: 146, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 1 0.01
40 145 0.99
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
Found at i:67431229 original size:20 final size:21
Alignment explanation
Indices: 67431186--67431239 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
67431176 CCCTTCTTTT
*
67431186 TCTTTCTTCTATTCGGCCAAGC
1 TCTTTCTTTTATTC-GCCAAGC
*
67431208 TCTTTCTTTTATT-GCCATGC
1 TCTTTCTTTTATTCGCCAAGC
* *
67431228 TCCTTATTTTAT
1 TCTTTCTTTTAT
67431240 CATTTCTAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 16 0.57
22 12 0.43
ACGTcount: A:0.13, C:0.26, G:0.09, T:0.52
Consensus pattern (21 bp):
TCTTTCTTTTATTCGCCAAGC
Found at i:67434862 original size:40 final size:40
Alignment explanation
Indices: 67434712--67434889 Score: 177
Period size: 40 Copynumber: 4.5 Consensus size: 40
67434702 TGGATGATAA
* *
67434712 CCGGGCTAAGTCCCGAAGGCATTTGCGCTG-GTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-TAT
*
67434752 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
67434792 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * * *
67434832 GCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* * *
67434872 TC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67434890 TGCTTGGCTT
Statistics
Matches: 120, Mismatches: 15, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
39 17 0.14
40 103 0.86
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67442884 original size:40 final size:40
Alignment explanation
Indices: 67442795--67443011 Score: 300
Period size: 40 Copynumber: 5.5 Consensus size: 40
67442785 TGGATGATAA
* *
67442795 CCGGGCTAAGTCCCGAAGGCA-TT-TGC-ACTGGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-TACTAGTT
* *
67442833 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACCA-TAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGT-T
67442873 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTT
* *
67442913 CCGGGCTAAGTCTCGAAGGCATTTGTCCGAGTTACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTT
67442953 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGT-T
* *
67442993 GCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67443012 TATTCGAGCG
Statistics
Matches: 161, Mismatches: 12, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
38 20 0.12
39 4 0.02
40 134 0.83
41 3 0.02
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTT
Found at i:67443006 original size:120 final size:118
Alignment explanation
Indices: 67442795--67443011 Score: 339
Period size: 120 Copynumber: 1.8 Consensus size: 118
67442785 TGGATGATAA
67442795 CCGGGCTAAGTCCCGAAGGCATTTGCACTGGACTAGTTCCGGGCTAAGTCCCAAAGGCATTTGTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCACTGGACTAGTTCCGGGCTAAGTCCCAAAGGCATTTGTG
67442860 CGAGTTACCATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTT
66 CGAGTTACCATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTT
* *
67442913 CCGGGCTAAGTCTCGAAGGCATTTGTC-C-GAGTTACTAGTTCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTG-CACTG-G--ACTAGTTCCGGGCTAAGTCCCAAAGGCATT
* * *
67442976 TGTGCGAGTTACTATATGCGGGCTATGTCCCGAAGG
62 TGTGCGAGTTACCATATCCGGGCTAAGTCCCGAAGG
67443012 TATTCGAGCG
Statistics
Matches: 90, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
117 1 0.01
118 26 0.29
119 1 0.01
120 62 0.69
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (118 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCACTGGACTAGTTCCGGGCTAAGTCCCAAAGGCATTTGTG
CGAGTTACCATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTT
Found at i:67443023 original size:40 final size:40
Alignment explanation
Indices: 67442795--67443050 Score: 294
Period size: 40 Copynumber: 6.5 Consensus size: 40
67442785 TGGATGATAA
* *
67442795 CCGGGCTAAGTCCCGAAGGCA-TT-TGC-ACTGGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-TACTA-TAT
* *
67442833 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
67442873 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
67442913 CCGGGCTAAGTCTCGAAGGCATTTGTCCGAGTTACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
67442953 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * * *
67442993 GCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
67443033 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67443051 TGCTTGGCTT
Statistics
Matches: 192, Mismatches: 19, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
38 20 0.10
39 19 0.10
40 150 0.78
41 3 0.02
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67445852 original size:53 final size:53
Alignment explanation
Indices: 67445773--67445976 Score: 212
Period size: 53 Copynumber: 3.8 Consensus size: 53
67445763 TTTCCTTTTT
* *
67445773 GAACTTACCATTGCCATGTCTTGGCATGGTCTTACGTGGTATCATTGCCTTAT-
1 GAACTTACCAATGCCATGTCTTGGCATGGTCTTACATGGTATC-TTGCCTTATA
* * * *
67445826 GAACTCACCAATGTCATGTCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
1 GAACTTACCAATGCCATGTCTTGGCATGGTCTTACATGGTATC-TTGCCTTATA
* * ** * *
67445880 GTAACTTATCAATGCCATGTTTTAACATGGTCTTACATGATTTCTTGCCTTATA
1 G-AACTTACCAATGCCATGTCTTGGCATGGTCTTACATGGTATCTTGCCTTATA
* * ** * *
67445934 GAAATTATCAATGTAATGCCTTGGCATGGTCTTACATGATATC
1 GAACTTACCAATGCCATGTCTTGGCATGGTCTTACATGGTATC
67445977 CTTATCTTAC
Statistics
Matches: 124, Mismatches: 25, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
53 80 0.65
54 12 0.10
55 32 0.26
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (53 bp):
GAACTTACCAATGCCATGTCTTGGCATGGTCTTACATGGTATCTTGCCTTATA
Found at i:67445947 original size:108 final size:108
Alignment explanation
Indices: 67445774--67445971 Score: 263
Period size: 108 Copynumber: 1.8 Consensus size: 108
67445764 TTCCTTTTTG
* ** * * *
67445774 AACTTACCATTGCCATGTCTTGGCATGGTCTTACGTGGTATCATTGCCTTATGAACTCACCAATG
1 AACTTACCAATGCCATGTCTTAACATGGTCTTACATGATATCATTGCCTTATGAAATCACCAATG
* *
67445839 TCATGTCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
66 TAATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * * *
67445882 AACTTATCAATGCCATGTTTTAACATGGTCTTACATGATTTC-TTGCCTTATAGAAATTATCAAT
1 AACTTACCAATGCCATGTCTTAACATGGTCTTACATGATATCATTGCCTTAT-GAAATCACCAAT
67445946 GTAATGCCTTGGCATGGTCTTACATG
65 GTAATGCCTTGGCATGGTCTTACATG
67445972 ATATCCTTAT
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
107 9 0.12
108 67 0.88
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (108 bp):
AACTTACCAATGCCATGTCTTAACATGGTCTTACATGATATCATTGCCTTATGAAATCACCAATG
TAATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:67446010 original size:47 final size:47
Alignment explanation
Indices: 67445958--67446126 Score: 284
Period size: 47 Copynumber: 3.6 Consensus size: 47
67445948 AATGCCTTGG
* * *
67445958 CATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
* *
67446005 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCCTATTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
67446052 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
67446099 CTTGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
67446127 GTGCCAATGC
Statistics
Matches: 114, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 114 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:67446332 original size:44 final size:44
Alignment explanation
Indices: 67446263--67446349 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
67446253 GTATCCTTAA
* *
67446263 CCGTCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGACTTTT
* * *
67446307 CCGTCAATTCTTCCTTAATTTCCATGGTACAACCATGGACTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTT
67446350 GAGATATCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
43 2 0.05
44 35 0.95
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (44 bp):
CCGTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTTT
Found at i:67453630 original size:49 final size:49
Alignment explanation
Indices: 67453558--67453750 Score: 219
Period size: 49 Copynumber: 3.9 Consensus size: 49
67453548 GCCTAAGCTA
*
67453558 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG
* * *
67453607 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTCACCA-
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAACAG
** * * * *
67453657 TCTAATACATATAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG
* *
67453705 TTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGAC
1 ---TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGAC
67453751 GTCACAATAG
Statistics
Matches: 119, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 39 0.33
50 38 0.32
51 39 0.33
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG
Found at i:67453693 original size:50 final size:49
Alignment explanation
Indices: 67453567--67453746 Score: 193
Period size: 50 Copynumber: 3.6 Consensus size: 49
67453557 ATCTGGTACG
* **
67453567 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCAACAGTCTAATACA
* *
67453616 CGTAGTAGCCTGCACTTAGTACTACACATGTGACCTCACCA-TCTAATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGA-C-CAACAGTCTAATACA
* * * *** *
67453666 TATAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCAACAG---TCTAATACA
67453717 CATAGTAGCCTGCACTTAGTACTACACATG
1 CATAGTAGCCTGCACTTAGTACTACACATG
67453747 CGACGTCACA
Statistics
Matches: 109, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 31 0.28
50 38 0.35
51 37 0.34
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGACCAACAGTCTAATACA
Found at i:67453741 original size:101 final size:99
Alignment explanation
Indices: 67453568--67453755 Score: 270
Period size: 101 Copynumber: 1.9 Consensus size: 99
67453558 TCTGGTACGC
* * *
67453568 ATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGCACTT
1 ATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTT
*
67453633 AGTACTACACATGTGACCTCACCATCTAATACAT
66 AGTACTACACATGCGACCTCACCATCTAATACAT
* * *
67453667 ATAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGCA
1 ATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGCCTGCA
*
67453731 CTTAGTACTACACATGCGACGTCAC
63 CTTAGTACTACACATGCGACCTCAC
67453756 AATAGATCAT
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
98 4 0.05
99 31 0.40
101 43 0.55
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.26
Consensus pattern (99 bp):
ATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTT
AGTACTACACATGCGACCTCACCATCTAATACAT
Found at i:67455684 original size:54 final size:56
Alignment explanation
Indices: 67455545--67455698 Score: 215
Period size: 55 Copynumber: 2.8 Consensus size: 56
67455535 TTGCCTTATG
* ** *
67455545 AACTCACCAATGCCATGTCTTGGCATGGTCTTACATGGGA-CCTTTACCTTATAGT
1 AACTCATCAATGCCATGTCTTGGCATGGTCTTACATGATATCCTTTACATTATAGT
* *
67455600 AACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTT-CATTATAG-
1 AACTCATCAATGCCATGTCTTGGCATGGTCTTACATGATATCCTTTACATTATAGT
* *
67455654 AACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 AACTCATCAATGCCATGTCTTGGCATGGTCTTACATGATATCCTT
67455699 ATCTTACCAA
Statistics
Matches: 88, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
54 41 0.47
55 42 0.48
56 5 0.06
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.36
Consensus pattern (56 bp):
AACTCATCAATGCCATGTCTTGGCATGGTCTTACATGATATCCTTTACATTATAGT
Found at i:67455732 original size:47 final size:47
Alignment explanation
Indices: 67455677--67455798 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
67455667 CATGCCTTGG
* *
67455677 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
67455724 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
**
67455771 TGTGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
67455799 ATGCCAATGC
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:67459375 original size:40 final size:39
Alignment explanation
Indices: 67459299--67459502 Score: 268
Period size: 40 Copynumber: 5.1 Consensus size: 39
67459289 CCCAAGTATG
* * *
67459299 TTCGGGATTTAG-CCAGATATAGCAACTCGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGC-ACTAGCACAAATGCC
* *
67459338 TTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCC
1 TTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATGCC
*
67459378 TTCGAGACTTAGCCCGGATATAGC-CGTTAGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGCAC--TAGCACAAATGCC
*
67459418 TTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATGCC
1 TTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATGCC
*
67459458 TTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGC-ACTAGCACAAATGCC
67459498 TTCGG
1 TTCGG
67459503 ATCTTAGTCC
Statistics
Matches: 146, Mismatches: 12, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
38 1 0.01
39 12 0.08
40 130 0.89
41 2 0.01
42 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (39 bp):
TTCGGGACTTAGCCCGGATATAGCACTAGCACAAATGCC
Found at i:67459509 original size:80 final size:80
Alignment explanation
Indices: 67459299--67459514 Score: 328
Period size: 80 Copynumber: 2.7 Consensus size: 80
67459289 CCCAAGTATG
* * *
67459299 TTCGGGATTTAG-CCAGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC
1 TTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTC
67459363 ACTAGCATAAATGCC
66 ACTAGCATAAATGCC
* *** *
67459378 TTCGAGACTTAGCCCGGATATAGCCGTTAGCACAAATGCCTTCGGGA-CTTAGCCCGGATATAGT
1 TTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTC-GGATCTTAGCCCGGATATAGT
67459442 CACTAGCATAAATGCC
65 CACTAGCATAAATGCC
*
67459458 TTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 TTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGCCCGG
67459515 TTATCATCCG
Statistics
Matches: 120, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
79 13 0.11
80 105 0.88
81 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
TTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTC
ACTAGCATAAATGCC
Found at i:67467486 original size:40 final size:40
Alignment explanation
Indices: 67467410--67467613 Score: 297
Period size: 40 Copynumber: 5.1 Consensus size: 40
67467400 CCCAAGCATG
* *
67467410 TTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCC
* *
67467449 TTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
**
67467489 TTCGGGACTTAGCCCGGATATAGTCGTTAGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
*
67467529 TTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
*
67467569 TTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCC
67467609 TTCGG
1 TTCGG
67467614 ATCTTGGTCC
Statistics
Matches: 149, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 11 0.07
40 137 0.92
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
TTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
Found at i:67467542 original size:80 final size:80
Alignment explanation
Indices: 67467410--67467613 Score: 331
Period size: 80 Copynumber: 2.6 Consensus size: 80
67467400 CCCAAGCATG
* * *
67467410 TTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC
1 TTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC
67467474 ACTAGCATAAATGCC
66 ACTAGCATAAATGCC
**
67467489 TTCGGGACTTAGCCCGGATATAGTC-GTTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 TTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
67467553 CACTAGCATAAATGCC
65 CACTAGCATAAATGCC
*
67467569 TTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGG
1 TTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGG
67467614 ATCTTGGTCC
Statistics
Matches: 114, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
79 12 0.11
80 101 0.89
81 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
TTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC
ACTAGCATAAATGCC
Found at i:67475055 original size:37 final size:38
Alignment explanation
Indices: 67474999--67475181 Score: 173
Period size: 37 Copynumber: 4.8 Consensus size: 38
67474989 TACATGTGGT
* *
67474999 ACGTGTAAGACCATGGCTGGGCTATGGCATCATAATAG
1 ACGTGTAAGACCATAGCTGGGCTATGGCATCATGATAG
67475037 -CGTGTAAGACCATAGCTGGGCTATGGCATCATGAT-G
1 ACGTGTAAGACCATAGCTGGGCTATGGCATCATGATAG
* * * **
67475073 ACATATAAGACCATAGCTTGGCTATGGCATTGTGAT--
1 ACGTGTAAGACCATAGCTGGGCTATGGCATCATGATAG
67475109 ACGTGTAAGACCAT-GTCTGGGAC-ATGGCATCGAT-ATGAG
1 ACGTGTAAGACCATAG-CTGGG-CTATGGCATC-ATGAT-AG
* *
67475148 ATCCTGTGTAAGACCATATCTGGGATATGGCATC
1 A--C-GTGTAAGACCATAGCTGGGCTATGGCATC
67475182 GGCATCGATA
Statistics
Matches: 119, Mismatches: 14, Indels: 20
0.78 0.09 0.13
Matches are distributed among these distances:
35 1 0.01
36 26 0.22
37 65 0.55
39 1 0.01
41 1 0.01
42 25 0.21
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (38 bp):
ACGTGTAAGACCATAGCTGGGCTATGGCATCATGATAG
Found at i:67475170 original size:42 final size:42
Alignment explanation
Indices: 67475111--67475403 Score: 200
Period size: 42 Copynumber: 6.7 Consensus size: 42
67475101 ATTGTGATAC
*
67475111 GTGTAAGACCATGTCTGGGACATGGCATCGATATGAGATCCT
1 GTGTAAGACCATATCTGGGACATGGCATCGATATGAGATCCT
67475153 GTGTAAGACCATATCTGGGATATGGCATCGGCATCGATATGAGATCCT
1 GTGTAAGACCATATCTGGG--A---CAT-GGCATCGATATGAGATCCT
* *
67475201 GTGTAAGACCATATCTGGGATATGGCATCGGCATCGATATGGGATTAC-
1 GTGTAAGACCATATCTGGG--A---CAT-GGCATCGATATGAGA-TCCT
* * * * *
67475249 GTGTAAGACCATATCTGGGATATGACTTCGCTATGAGAT-TT
1 GTGTAAGACCATATCTGGGACATGGCATCGATATGAGATCCT
* * *** * **
67475290 CGTGTAAGACCGTGTCTGGGATGCGGCATCGATATGTGATTTT
1 -GTGTAAGACCATATCTGGGACATGGCATCGATATGAGATCCT
* * ** * *
67475333 GTATAAGACCATGTCTGGGACATGGCATTAATGTGAGA-CTTT
1 GTGTAAGACCATATCTGGGACATGGCATCGATATGAGATC-CT
67475375 GTGTAAGACCATAGT-T-GGACTATGGCATC
1 GTGTAAGACCATA-TCTGGGAC-ATGGCATC
67475404 AAGTAAACGA
Statistics
Matches: 208, Mismatches: 30, Indels: 26
0.79 0.11 0.10
Matches are distributed among these distances:
41 5 0.02
42 110 0.53
43 5 0.02
44 1 0.00
46 1 0.00
47 3 0.01
48 81 0.39
49 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGACATGGCATCGATATGAGATCCT
Found at i:67475205 original size:48 final size:48
Alignment explanation
Indices: 67475134--67475272 Score: 244
Period size: 48 Copynumber: 2.9 Consensus size: 48
67475124 TCTGGGACAT
67475134 GGCATCGATATGAGATCCTGTGTAAGACCATATCTGGGATATGGCATC
1 GGCATCGATATGAGATCCTGTGTAAGACCATATCTGGGATATGGCATC
67475182 GGCATCGATATGAGATCCTGTGTAAGACCATATCTGGGATATGGCATC
1 GGCATCGATATGAGATCCTGTGTAAGACCATATCTGGGATATGGCATC
* *
67475230 GGCATCGATATGGGATTAC-GTGTAAGACCATATCTGGGATATG
1 GGCATCGATATGAGA-TCCTGTGTAAGACCATATCTGGGATATG
67475273 ACTTCGCTAT
Statistics
Matches: 88, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
48 86 0.98
49 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.27
Consensus pattern (48 bp):
GGCATCGATATGAGATCCTGTGTAAGACCATATCTGGGATATGGCATC
Found at i:67476674 original size:12 final size:12
Alignment explanation
Indices: 67476657--67476683 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
67476647 CTGAAGCTTT
67476657 AGTGCTAAGTTC
1 AGTGCTAAGTTC
67476669 AGTGCTAAGTTC
1 AGTGCTAAGTTC
67476681 AGT
1 AGT
67476684 TTGGATTAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (12 bp):
AGTGCTAAGTTC
Found at i:67479566 original size:28 final size:29
Alignment explanation
Indices: 67479483--67479573 Score: 103
Period size: 29 Copynumber: 3.2 Consensus size: 29
67479473 GAAAGCATGT
* * * *
67479483 ATATGAATGTGATTCGGGCATAACGGGCC
1 ATATGAATGAGATTTGGGCCTAATGGGCC
* *
67479512 ACATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGAGATTTGGGCCTAATGGGCC
**
67479541 ATATGAATGAGA-TTGGGCCTTGTGGGCC
1 ATATGAATGAGATTTGGGCCTAATGGGCC
67479569 ATATG
1 ATATG
67479574 CATGTATATA
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
28 19 0.35
29 35 0.65
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
ATATGAATGAGATTTGGGCCTAATGGGCC
Found at i:67481786 original size:27 final size:27
Alignment explanation
Indices: 67481738--67481819 Score: 105
Period size: 27 Copynumber: 3.1 Consensus size: 27
67481728 AAGTGAATTA
67481738 TACTGGTGGC-TTGCCACATATACTGT
1 TACTGGTGGCTTTGCCACATATACTGT
*
67481764 TACTGGTGGCTTTGCCACATATACTGA
1 TACTGGTGGCTTTGCCACATATACTGT
** * *
67481791 TACTGGCAGCTTTGCTAC-GATACTGT
1 TACTGGTGGCTTTGCCACATATACTGT
67481817 TAC
1 TAC
67481820 CAGTAGCCTT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
26 19 0.39
27 30 0.61
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (27 bp):
TACTGGTGGCTTTGCCACATATACTGT
Found at i:67487196 original size:26 final size:26
Alignment explanation
Indices: 67487155--67487215 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
67487145 ACATGAATTC
67487155 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
67487181 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
67487207 TTATCATGA
1 TTATCATGA
67487216 TTATCAATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:67492908 original size:26 final size:26
Alignment explanation
Indices: 67492863--67492923 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
67492853 CATGATATTC
67492863 TTATCATGAAACATTCACCTAACCCA
1 TTATCATGAAACATTCACCTAACCCA
* * * *
67492889 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGAAACATTCACCTAACCCA
67492915 TTATCATGA
1 TTATCATGA
67492924 TTATCAATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTCACCTAACCCA
Found at i:67496417 original size:34 final size:34
Alignment explanation
Indices: 67496374--67496440 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
67496364 TTCTATTAAA
*
67496374 CTCAATTTACATCTTAGGCAAAATTACCATTTTG
1 CTCAATTTACATCCTAGGCAAAATTACCATTTTG
67496408 CTCAATTTACATCCTAGGCAAAATTACCATTTT
1 CTCAATTTACATCCTAGGCAAAATTACCATTTT
67496441 ACCCCTAAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.37
Consensus pattern (34 bp):
CTCAATTTACATCCTAGGCAAAATTACCATTTTG
Found at i:67497171 original size:14 final size:14
Alignment explanation
Indices: 67497152--67497178 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
67497142 TAAAATCGAT
67497152 AAAATTTTCTTATC
1 AAAATTTTCTTATC
67497166 AAAATTTTCTTAT
1 AAAATTTTCTTAT
67497179 GACATTCTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (14 bp):
AAAATTTTCTTATC
Found at i:67505746 original size:36 final size:36
Alignment explanation
Indices: 67505685--67505753 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
67505675 TACTGATATA
*
67505685 GTTGCACAGGTTGCACAAAACGACTGTGGACCTGAG
1 GTTGCACAGGTCGCACAAAACGACTGTGGACCTGAG
*
67505721 GTTGCACAGGTCGCA-AAAGATGACTGTGGACCT
1 GTTGCACAGGTCGCACAAA-ACGACTGTGGACCT
67505754 ACTGATGGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
35 3 0.10
36 27 0.90
ACGTcount: A:0.28, C:0.22, G:0.30, T:0.20
Consensus pattern (36 bp):
GTTGCACAGGTCGCACAAAACGACTGTGGACCTGAG
Found at i:67505779 original size:20 final size:20
Alignment explanation
Indices: 67505756--67505886 Score: 181
Period size: 20 Copynumber: 6.5 Consensus size: 20
67505746 GTGGACCTAC
67505756 TGATGGCTTTGTGCCACTAT
1 TGATGGCTTTGTGCCACTAT
* *
67505776 TGATGGCTTTGTACCACTAC
1 TGATGGCTTTGTGCCACTAT
**
67505796 AAATGGCTTTGTGCCACTAT
1 TGATGGCTTTGTGCCACTAT
*
67505816 TGATGGCTTTGTGCCGCTAT
1 TGATGGCTTTGTGCCACTAT
* * *
67505836 TGATGGCTTGGTTCCATTAT
1 TGATGGCTTTGTGCCACTAT
*
67505856 TGATGGCTTTGTGCCACTAC
1 TGATGGCTTTGTGCCACTAT
67505876 TGATGGCTTTG
1 TGATGGCTTTG
67505887 GACCTAGGCT
Statistics
Matches: 94, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 94 1.00
ACGTcount: A:0.16, C:0.20, G:0.25, T:0.39
Consensus pattern (20 bp):
TGATGGCTTTGTGCCACTAT
Found at i:67509634 original size:20 final size:20
Alignment explanation
Indices: 67509609--67509719 Score: 186
Period size: 20 Copynumber: 5.5 Consensus size: 20
67509599 TTAGACCTAC
67509609 TGATGGCTTTGTGCCACTAT
1 TGATGGCTTTGTGCCACTAT
67509629 TGATGGCTTTGTGCCACTAT
1 TGATGGCTTTGTGCCACTAT
**
67509649 TGATGGCTTTGTGCTGCTAT
1 TGATGGCTTTGTGCCACTAT
* *
67509669 TGATGGCTTGGTGCCATTAT
1 TGATGGCTTTGTGCCACTAT
67509689 TGATGGCTTTGTGCCACTAT
1 TGATGGCTTTGTGCCACTAT
67509709 TGATGGCTTTG
1 TGATGGCTTTG
67509720 AACCTAGGCT
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 83 1.00
ACGTcount: A:0.14, C:0.17, G:0.28, T:0.41
Consensus pattern (20 bp):
TGATGGCTTTGTGCCACTAT
Found at i:67519493 original size:14 final size:14
Alignment explanation
Indices: 67519462--67519494 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
67519452 TAAAAGAGAG
*
67519462 TGAAAAGAAAATGA
1 TGAAAAGAAAAAGA
67519476 -GAAAAGAAAAAGA
1 TGAAAAGAAAAAGA
67519489 TGAAAA
1 TGAAAA
67519495 AGACAAAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.70, C:0.00, G:0.21, T:0.09
Consensus pattern (14 bp):
TGAAAAGAAAAAGA
Found at i:67521242 original size:29 final size:29
Alignment explanation
Indices: 67521206--67521309 Score: 165
Period size: 29 Copynumber: 3.6 Consensus size: 29
67521196 ATAAACGATC
***
67521206 TCGCACACTTAGTGCCATGCGATTTAAGCT
1 TCGCACACTTAGTGCCATATAATTTAAG-T
67521236 T-GCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
67521264 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
67521293 TCGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
67521310 ATCTTATCAC
Statistics
Matches: 70, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
28 2 0.03
29 67 0.96
30 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATAATTTAAGT
Found at i:67529285 original size:29 final size:29
Alignment explanation
Indices: 67529250--67529411 Score: 243
Period size: 29 Copynumber: 5.6 Consensus size: 29
67529240 ATAAACGATC
*** *
67529250 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
67529279 TCGCACACATAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
67529308 TTGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
67529337 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
67529366 TCGCACACTTAGTGCCATATGATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
**
67529395 TTACACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
67529412 ATCTTGTCAC
Statistics
Matches: 122, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 122 1.00
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATAATTTAAGT
Found at i:67546757 original size:13 final size:13
Alignment explanation
Indices: 67546739--67546764 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67546729 CCTATTCACA
67546739 ATTTATGCAATAT
1 ATTTATGCAATAT
67546752 ATTTATGCAATAT
1 ATTTATGCAATAT
67546765 CAAAGCATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (13 bp):
ATTTATGCAATAT
Found at i:67551153 original size:47 final size:48
Alignment explanation
Indices: 67551094--67551229 Score: 204
Period size: 47 Copynumber: 2.9 Consensus size: 48
67551084 AATGGCCAAT
67551094 GTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAA-A
1 GTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATA
* * *
67551141 GTGAGCATGCATATGTGTGATAAGGCTGAATGGCCAATGTGATGAATA
1 GTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATA
* * *
67551189 -TGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGA
1 GTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
67551230 AATATGTATG
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
47 78 0.99
48 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.26
Consensus pattern (48 bp):
GTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATA
Found at i:67551183 original size:22 final size:22
Alignment explanation
Indices: 67551108--67551183 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
67551098 ACATGCATAT
*
67551108 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCTGAATGGCCA
*
67551130 ATGTGATGAAAG-TGAGCAT-G-CA
1 ATGTGAT-AAGGCTGA--ATGGCCA
67551152 TATGTGTGATAAGGCTGAATGGCCA
1 -A--TGTGATAAGGCTGAATGGCCA
67551177 ATGTGAT
1 ATGTGAT
67551184 GAATATGAAC
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 17 0.40
23 7 0.17
24 7 0.17
25 11 0.26
ACGTcount: A:0.32, C:0.12, G:0.32, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCTGAATGGCCA
Found at i:67551544 original size:37 final size:37
Alignment explanation
Indices: 67551436--67551544 Score: 175
Period size: 37 Copynumber: 2.9 Consensus size: 37
67551426 GGAAATATAT
*
67551436 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
67551473 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
67551510 TCCGGGTAAGACCTGAT-AGCTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGA-CTACGTGTGGAGATTT
67551545 CGTCTGAGCT
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
36 1 0.01
37 67 0.99
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:67557590 original size:26 final size:26
Alignment explanation
Indices: 67557543--67557592 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
67557533 ACATATTTTC
*
67557543 TCAAAATTTTAGTAGGGGTAAAATTG
1 TCAAAATTTTAGTAGAGGTAAAATTG
*
67557569 TCAAAATTTT-GATAGAGTTAAAAT
1 TCAAAATTTTAG-TAGAGGTAAAAT
67557593 AGGGATGGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 20 0.95
ACGTcount: A:0.42, C:0.04, G:0.18, T:0.36
Consensus pattern (26 bp):
TCAAAATTTTAGTAGAGGTAAAATTG
Found at i:67560266 original size:101 final size:101
Alignment explanation
Indices: 67560089--67560348 Score: 326
Period size: 101 Copynumber: 2.6 Consensus size: 101
67560079 GTTTCCATTG
* * * ** * *
67560089 TGCCATAGTTCAACTATGATCTTACATAT--GCATTGCCATGGCCCTGCCATGGTCTTACATTCG
1 TGCCATAGTTCAACTATGATCTTACATATAAACACTGCCATGGTCCAACCATGGTCTTACATCCA
* *
67560152 TAGTGCCATAACCCAATTATAGTCTTATTATCAGAA
66 TAGTGCCATAACCCAATTATAGTCTTATCATAAGAA
* * * *
67560188 TGCCATAGTTCAACTATTATCTTACATATAAACACTGTCATGGTCCAACCATGGTCTTTCGTCCA
1 TGCCATAGTTCAACTATGATCTTACATATAAACACTGCCATGGTCCAACCATGGTCTTACATCCA
* *
67560253 TAGTGTCATAACCCAATTATGGTCTTATCATAAGAA
66 TAGTGCCATAACCCAATTATAGTCTTATCATAAGAA
* *** *
67560289 TGCCGTAACCCAACTATGAACTTACATATAAACACTGCCATGGTCCAACCATGGTCTTAC
1 TGCCATAGTTCAACTATGATCTTACATATAAACACTGCCATGGTCCAACCATGGTCTTAC
67560349 GTTTGAATAA
Statistics
Matches: 136, Mismatches: 23, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
99 28 0.21
101 108 0.79
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.32
Consensus pattern (101 bp):
TGCCATAGTTCAACTATGATCTTACATATAAACACTGCCATGGTCCAACCATGGTCTTACATCCA
TAGTGCCATAACCCAATTATAGTCTTATCATAAGAA
Found at i:67561753 original size:28 final size:27
Alignment explanation
Indices: 67561689--67561758 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 27
67561679 AAGCAGGGTA
* * *
67561689 ATTCAGACATGCTTAATTCCAGCGTTC
1 ATTCAGACATGATTAATTCCAGCATAC
* * *
67561716 ATTCGGACATGATTAATCTCCTGTATAC
1 ATTCAGACATGATTAAT-TCCAGCATAC
67561744 ATTCAGACAT-ATTAA
1 ATTCAGACATGATTAA
67561759 ACTCTAGCAT
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
27 20 0.57
28 15 0.43
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.34
Consensus pattern (27 bp):
ATTCAGACATGATTAATTCCAGCATAC
Found at i:67568743 original size:12 final size:13
Alignment explanation
Indices: 67568700--67568742 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
67568690 TAGAGCTGGC
67568700 GAACATAATTCTT
1 GAACATAATTCTT
** *
67568713 GAACATCTTTTTT
1 GAACATAATTCTT
67568726 GAACA-AATTCTT
1 GAACATAATTCTT
67568738 GAACA
1 GAACA
67568743 ATTAAGCAAG
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
12 9 0.38
13 15 0.62
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.37
Consensus pattern (13 bp):
GAACATAATTCTT
Found at i:67570480 original size:47 final size:47
Alignment explanation
Indices: 67570426--67570520 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
67570416 TAAAAAATAC
67570426 TTGGATATTATAGTTACCTAAGGATTGAAATAAAAAGCATGTGGCAG
1 TTGGATATTATAGTTACCTAAGGATTGAAATAAAAAGCATGTGGCAG
* *
67570473 TTGGATATTGTAGTTACCTAAGGATTGAAATAAATAGCATGTGGCAG
1 TTGGATATTATAGTTACCTAAGGATTGAAATAAAAAGCATGTGGCAG
67570520 T
1 T
67570521 GTTAATGTCT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.36, C:0.08, G:0.24, T:0.32
Consensus pattern (47 bp):
TTGGATATTATAGTTACCTAAGGATTGAAATAAAAAGCATGTGGCAG
Found at i:67574330 original size:28 final size:28
Alignment explanation
Indices: 67574269--67574333 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
67574259 TTATGGGTCC
*
67574269 AACACAAGCCTACAAAAGCTCTTTTGCT
1 AACACGAGCCTACAAAAGCTCTTTTGCT
*
67574297 AACACGAGCCTACGAAAGCTCTTTTGCT
1 AACACGAGCCTACAAAAGCTCTTTTGCT
67574325 AACACGAGC
1 AACACGAGC
67574334 ATGAATTATG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.22
Consensus pattern (28 bp):
AACACGAGCCTACAAAAGCTCTTTTGCT
Found at i:67576481 original size:17 final size:17
Alignment explanation
Indices: 67576459--67576494 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
67576449 ACATGTATTC
67576459 AATTTGTTCCCTAATGT
1 AATTTGTTCCCTAATGT
67576476 AATTTGTTCCCTAATGT
1 AATTTGTTCCCTAATGT
67576493 AA
1 AA
67576495 CAAAGTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.44
Consensus pattern (17 bp):
AATTTGTTCCCTAATGT
Found at i:67579533 original size:20 final size:21
Alignment explanation
Indices: 67579473--67579533 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
67579463 GTTATAAGGA
67579473 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
* *
67579494 CCACATGGGCTTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
*
67579515 CCGCACGGGCGTG-TGCCCT
1 CCACACGGGCGTGTTGCCCT
67579534 ATTTCAAGAG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
20 6 0.17
21 29 0.83
ACGTcount: A:0.08, C:0.38, G:0.30, T:0.25
Consensus pattern (21 bp):
CCACACGGGCGTGTTGCCCTT
Found at i:67591809 original size:40 final size:40
Alignment explanation
Indices: 67591752--67591938 Score: 299
Period size: 40 Copynumber: 4.7 Consensus size: 40
67591742 GCTACTTGCT
67591752 CAAATG-CTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
67591791 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
67591831 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACGCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
67591871 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
67591910 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
67591939 CATCCGAATA
Statistics
Matches: 137, Mismatches: 7, Indels: 7
0.91 0.05 0.05
Matches are distributed among these distances:
38 1 0.01
39 39 0.28
40 96 0.70
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:67599054 original size:40 final size:40
Alignment explanation
Indices: 67598997--67599181 Score: 288
Period size: 40 Copynumber: 4.7 Consensus size: 40
67598987 GCTACTTGCT
67598997 CAAATG-CTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
67599036 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
67599076 TAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
** * *
67599116 CAAATGCCTTCGGG-CTTAGCCC-AAT-TAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
67599153 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
67599182 CATCCGAATA
Statistics
Matches: 134, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
37 24 0.18
38 10 0.07
39 15 0.11
40 85 0.63
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:67601336 original size:29 final size:29
Alignment explanation
Indices: 67601296--67601369 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
67601286 GTTGAGAGAT
* *
67601296 TGGCACTGAGTGTGCGAGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* * *
67601325 TGGCACTAAGTGTGTGAGTTTAAAGTATA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
67601354 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
67601370 CGGCTGATTA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 5 0.13
29 33 0.87
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:67609357 original size:29 final size:29
Alignment explanation
Indices: 67609317--67609379 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
67609307 GTTGAGAGAT
*
67609317 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
67609346 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
67609375 TGGCA
1 TGGCA
67609380 NCTAGAGACA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:67614931 original size:40 final size:40
Alignment explanation
Indices: 67614830--67615050 Score: 232
Period size: 40 Copynumber: 5.5 Consensus size: 40
67614820 TATTCGAATG
* * *
67614830 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
67614871 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
67614911 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * * * *
67614951 ATATCCGGGCTTAGTCCCGAAGACATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
67614991 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
67615030 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
67615051 ATACTTGGGT
Statistics
Matches: 149, Mismatches: 30, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
37 1 0.01
38 13 0.09
39 15 0.10
40 92 0.62
41 28 0.19
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:67618215 original size:5 final size:5
Alignment explanation
Indices: 67618205--67618238 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
67618195 CTAATTTGTG
67618205 AAAAT AAAAT AAAAT AAAACT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAA-T AAAAT AAAAT AAA
67618239 GAACACAGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:67618230 original size:16 final size:15
Alignment explanation
Indices: 67618205--67618238 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
67618195 CTAATTTGTG
67618205 AAAATAAAATAAAAT
1 AAAATAAAATAAAAT
67618220 AAAACTAAAATAAAAT
1 AAAA-TAAAATAAAAT
67618236 AAA
1 AAA
67618239 GAACACAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (15 bp):
AAAATAAAATAAAAT
Found at i:67618809 original size:12 final size:12
Alignment explanation
Indices: 67618792--67618822 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
67618782 TGTGCAATCC
67618792 CGTACAAGCGCT
1 CGTACAAGCGCT
67618804 CGTACAAGCGCT
1 CGTACAAGCGCT
67618816 CGTACAA
1 CGTACAA
67618823 ACCCTATTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.29, C:0.32, G:0.23, T:0.16
Consensus pattern (12 bp):
CGTACAAGCGCT
Found at i:67621615 original size:46 final size:45
Alignment explanation
Indices: 67621564--67621731 Score: 187
Period size: 46 Copynumber: 3.6 Consensus size: 45
67621554 GTAGCTGATA
* *
67621564 CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCGAAG
1 CATGTCCCAGACATGTCTTACACTAGCTT-CGTCTCGAGGCCGATG
* *
67621610 CATGTCCCAGACATGTCTTACACTAGCAATT-GTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGC--TTCGTCTCGAGGCCGATG
* * * *
67621656 CCATGTCCCAGACATGGTATTACACTAGCTCTCATAAT-GTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCT-TCGT-CTCGAGGCCGATG
67621704 CATGTCCCAGACATGTCTTACACTAGCT
1 CATGTCCCAGACATGTCTTACACTAGCT
67621732 CACACAAGTG
Statistics
Matches: 104, Mismatches: 11, Indels: 14
0.81 0.09 0.11
Matches are distributed among these distances:
46 52 0.50
47 29 0.28
48 22 0.21
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTTCGTCTCGAGGCCGATG
Found at i:67621707 original size:94 final size:91
Alignment explanation
Indices: 67621460--67621730 Score: 273
Period size: 94 Copynumber: 2.9 Consensus size: 91
67621450 GGAGGTAAGG
* * * *
67621460 TGCCGATGCCATGTCCCAGACATGGTCCTACACAAGTTCTAGCATATCTGTGCCGATGCCATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTA-CATATGTG-GCCGATG-CATGTC
* *
67621525 CTAGACATGGTCTTACACT-GACAAATCTCG
63 CCAGACAT-GTCTTACACTAG-CAAATCTCA
* * * * * * *
67621555 TAGCTGAT-ACATGTCCCAGACAT-GTCTTACACTGGCT-TACGTCTCGAGGCCGAAGCATGTCC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATAT-GTGGCCGATGCATGTCC
*
67621617 CAGACATGTCTTACACTAGCAATTGTCTCAA
64 CAGACATGTCTTACACTAGCAA--ATCTC-A
*
67621648 TGCCGATGCCATGTCCCAGACATGGTATTACACTAGCTCT-CATAATGTGGCCGATGCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACAT-ATGTGGCCGATGCATGTCCC
67621712 AGACATGTCTTACACTAGC
65 AGACATGTCTTACACTAGC
67621731 TCACACAAGT
Statistics
Matches: 144, Mismatches: 22, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
90 13 0.09
91 14 0.10
92 18 0.12
93 18 0.12
94 59 0.41
95 17 0.12
96 5 0.03
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.27
Consensus pattern (91 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATATGTGGCCGATGCATGTCCCA
GACATGTCTTACACTAGCAAATCTCA
Found at i:67624189 original size:15 final size:15
Alignment explanation
Indices: 67624171--67624200 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
67624161 GGTACTAGCA
67624171 TGAAAACACCTAAAG
1 TGAAAACACCTAAAG
*
67624186 TGAAAACAGCTAAAG
1 TGAAAACACCTAAAG
67624201 GGACTATTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.17, G:0.17, T:0.13
Consensus pattern (15 bp):
TGAAAACACCTAAAG
Found at i:67625020 original size:49 final size:49
Alignment explanation
Indices: 67624967--67625097 Score: 244
Period size: 49 Copynumber: 2.7 Consensus size: 49
67624957 TACGAGAGCT
67624967 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGATAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGATAGCC
*
67625016 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGATAGCC
*
67625065 AGTGTAAGACCATGTTTGGGACATGGCATCGAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC
67625098 AATTTATCTC
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 79 1.00
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGATAGCC
Found at i:67625406 original size:12 final size:12
Alignment explanation
Indices: 67625389--67625422 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
67625379 TGCCTACTCT
67625389 CTTTTCTTTCCC
1 CTTTTCTTTCCC
67625401 CTTTTCTTTCCC
1 CTTTTCTTTCCC
67625413 CTTTTCTTTC
1 CTTTTCTTTC
67625423 AGTGCCGCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (12 bp):
CTTTTCTTTCCC
Found at i:67631907 original size:30 final size:30
Alignment explanation
Indices: 67631873--67631930 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
67631863 TTTTTGAGCA
* *
67631873 TAGGGGTAAAATGGT-TTTTTTGCCAAAGTT
1 TAGGGGCAAAATGGTCATTTTT-CCAAAGTT
67631903 TAGGGGCAAAATGGTCATTTTTCCAAAG
1 TAGGGGCAAAATGGTCATTTTTCCAAAG
67631931 ATGTGAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.34
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTTCCAAAGTT
Found at i:67632526 original size:49 final size:49
Alignment explanation
Indices: 67632273--67632584 Score: 165
Period size: 47 Copynumber: 6.6 Consensus size: 49
67632263 CTTGTGTGCC
* * * * * *
67632273 AGTGTAAGA-CAGGTCTTGGACAT-GCATCGGCCAC-ATTATGAGTGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATGATGAGAGCT
* * * * * * * ** *
67632319 AGTATAAGACCATGTTTAGGACATGGCAT-TGGCATAGA-GACGAGTTCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCA-CGATGATGAGAGCT
* * * * *
67632367 AGTGTAA-AACATGACTGGGACAT-GCATCGGCCTCGATGATGATAGCCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATGATGAGAG-CT
* * * * * * *
67632415 -GTGTAAGA-CGTGTCTGAGACA-CGCATCAGCTAAGA-GTTGTG-G-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATGATGAGAGCT
67632458 AGTGTAAGA-CATGTCTGGGACAT-GCATCAG-CACGTAT-ATACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACG-ATGAT--GAGAGCT
* * *
67632506 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATGATGATAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATGATGAGAGCT
67632555 AGTGTAAGACCATG-CTTGGGACATGGCATC
1 AGTGTAAGACCATGTC-TGGGACATGGCATC
67632585 GGCAACTTAT
Statistics
Matches: 200, Mismatches: 44, Indels: 41
0.70 0.15 0.14
Matches are distributed among these distances:
43 3 0.01
44 28 0.14
45 1 0.00
46 19 0.09
47 58 0.29
48 29 0.14
49 48 0.24
50 9 0.05
51 5 0.03
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATGATGAGAGCT
Found at i:67636443 original size:24 final size:24
Alignment explanation
Indices: 67636407--67636483 Score: 118
Period size: 24 Copynumber: 3.2 Consensus size: 24
67636397 AAGTCTGTCA
*
67636407 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
67636431 GGATAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
67636455 GGAGGGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
67636479 GGAGA
1 GGAGA
67636484 ACAGTGTTGG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.31, C:0.03, G:0.43, T:0.23
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:67638032 original size:40 final size:40
Alignment explanation
Indices: 67637988--67638173 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
67637978 GCTACTCGTT
* * *
67637988 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
67638028 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
67638068 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
67638108 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
67638149 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67638174 CATCATTCGA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 116 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:67646175 original size:40 final size:40
Alignment explanation
Indices: 67646131--67646314 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
67646121 GCTACTCGTT
* * *
67646131 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
67646171 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACT--CA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
67646209 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
67646249 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
67646290 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67646315 CATCATTCGA
Statistics
Matches: 128, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
37 3 0.02
38 32 0.25
40 80 0.62
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:67646274 original size:78 final size:79
Alignment explanation
Indices: 67646137--67646314 Score: 213
Period size: 78 Copynumber: 2.3 Consensus size: 79
67646127 CGTTCAAATA
* * *
67646137 CCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTA
1 CCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATA
67646201 GTAAC-T-CACAAATG
65 GTAACTTACACAAA-G
* **
67646215 CCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATAT
1 CCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATAT
*
67646278 AGTCACTTAGCACAAAG
64 AGTAACTTA-CACAAAG
67646295 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAGCCCGGA
67646315 CATCATTCGA
Statistics
Matches: 85, Mismatches: 8, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
77 6 0.07
78 51 0.60
79 3 0.04
80 16 0.19
81 9 0.11
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAG
TAACTTACACAAAG
Found at i:67647749 original size:24 final size:24
Alignment explanation
Indices: 67647713--67647789 Score: 118
Period size: 24 Copynumber: 3.2 Consensus size: 24
67647703 AAGTCTGTCA
*
67647713 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
67647737 GGATAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
67647761 GGAGGGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
67647785 GGAGA
1 GGAGA
67647790 ACAGTGTTGG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.31, C:0.03, G:0.43, T:0.23
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:67649333 original size:40 final size:40
Alignment explanation
Indices: 67649289--67649474 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
67649279 GCTACTCGTT
* * *
67649289 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
67649329 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
67649369 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
67649409 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
67649450 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67649475 CATCATTCGA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 116 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:67657471 original size:40 final size:40
Alignment explanation
Indices: 67657427--67657610 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
67657417 GCTACTCGTT
* * *
67657427 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
67657467 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACT--CA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
67657505 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
67657545 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
67657586 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67657611 CATCATTCGA
Statistics
Matches: 128, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
37 3 0.02
38 32 0.25
40 80 0.62
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:67657570 original size:78 final size:79
Alignment explanation
Indices: 67657433--67657610 Score: 213
Period size: 78 Copynumber: 2.3 Consensus size: 79
67657423 CGTTCAAATA
* * *
67657433 CCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTA
1 CCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATA
67657497 GTAAC-T-CACAAATG
65 GTAACTTACACAAA-G
* **
67657511 CCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATAT
1 CCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATAT
*
67657574 AGTCACTTAGCACAAAG
64 AGTAACTTA-CACAAAG
67657591 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAGCCCGGA
67657611 CATCATTCGA
Statistics
Matches: 85, Mismatches: 8, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
77 6 0.07
78 51 0.60
79 3 0.04
80 16 0.19
81 9 0.11
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAG
TAACTTACACAAAG
Found at i:67660250 original size:8 final size:8
Alignment explanation
Indices: 67660237--67660269 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
67660227 CTAGATCGGT
67660237 AAAAGCCG
1 AAAAGCCG
67660245 AAAAGCCG
1 AAAAGCCG
*
67660253 AAATGCCG
1 AAAAGCCG
67660261 AAAAGCCG
1 AAAAGCCG
67660269 A
1 A
67660270 CATTTTAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.48, C:0.24, G:0.24, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:67660721 original size:27 final size:27
Alignment explanation
Indices: 67660681--67660791 Score: 145
Period size: 27 Copynumber: 4.1 Consensus size: 27
67660671 AGGAAGCGTC
* *
67660681 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGTT
*
67660708 CTGGTGGCTCTGCC-CCATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGTT
67660735 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
* * *
67660762 CTGGTGACTTTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
67660788 CTGG
1 CTGG
67660792 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 17 0.23
27 55 0.73
28 3 0.04
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGTT
Found at i:67667111 original size:24 final size:24
Alignment explanation
Indices: 67667012--67667112 Score: 148
Period size: 24 Copynumber: 4.2 Consensus size: 24
67667002 AAGTCTGTCA
* *
67667012 GGAGAGGATTTAGGAGTTAATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
67667036 GGATAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
67667060 GGATAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
67667084 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
67667108 GGAGA
1 GGAGA
67667113 ACAGTGTTGG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 72 1.00
ACGTcount: A:0.34, C:0.02, G:0.40, T:0.25
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:67668582 original size:54 final size:53
Alignment explanation
Indices: 67668498--67668608 Score: 150
Period size: 54 Copynumber: 2.1 Consensus size: 53
67668488 AGGAAGCGTC
* * *
67668498 CTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCCCATATATCTATT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACAT-TATCTATT
* * * *
67668552 CTGGTGGCTCTGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTATT
67668605 CTGG
1 CTGG
67668609 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 11 0.22
54 39 0.78
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTATT
Found at i:67668605 original size:26 final size:26
Alignment explanation
Indices: 67668498--67668608 Score: 132
Period size: 27 Copynumber: 4.2 Consensus size: 26
67668488 AGGAAGCGTC
* * *
67668498 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
67668525 CTGGTGGCTCTGCCCCATATATCTATT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
67668552 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
67668579 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
67668605 CTGG
1 CTGG
67668609 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 16 0.22
27 55 0.75
28 2 0.03
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:67672377 original size:27 final size:27
Alignment explanation
Indices: 67672358--67672552 Score: 192
Period size: 27 Copynumber: 7.2 Consensus size: 27
67672348 ATTACCAAAG
*
67672358 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCATTT
* *
67672385 TACCCTCAGTTTACAGAATTACTATTT
1 TACCCTCAATTTACAGAATTACCATTT
* * *
67672412 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCATTT
* ** * * *
67672439 TACCCTCGATTTGTAAAATTATCGTTT
1 TACCCTCAATTTACAGAATTACCATTT
** * *
67672466 TACCCTTGATTTACAGAATTACTAGTT
1 TACCCTCAATTTACAGAATTACCATTT
* * * *
67672493 TACCCTCAGTTTACAAAATTATCGTTT
1 TACCCTCAATTTACAGAATTACCATTT
* *
67672520 TACCCTCAATTTACAGAATTATCGTTT
1 TACCCTCAATTTACAGAATTACCATTT
67672547 TACCCT
1 TACCCT
67672553 TGATTGTGAA
Statistics
Matches: 139, Mismatches: 29, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 139 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCAATTTACAGAATTACCATTT
Found at i:67672405 original size:54 final size:53
Alignment explanation
Indices: 67672358--67672552 Score: 223
Period size: 54 Copynumber: 3.6 Consensus size: 53
67672348 ATTACCAAAG
*
67672358 TACCCTCAATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTT
1 TACCCTCAATTTACAGAATTACCGTTTTACCCTCAGTTTACA-AATTACCATTT
* * * * *
67672412 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTGTA-AAATTATCGTTT
1 TACCCTCAATTTACAGAATTACCGTTTTACCCTC-AGTT-TACAAATTACCATTT
** * * *
67672466 TACCCTTGATTTACAGAATTACTAG-TTTACCCTCAGTTTACAAAATTATCGTTT
1 TACCCTCAATTTACAGAATTAC-CGTTTTACCCTCAGTTTAC-AAATTACCATTT
*
67672520 TACCCTCAATTTACAGAATTATCGTTTTACCCT
1 TACCCTCAATTTACAGAATTACCGTTTTACCCT
67672553 TGATTGTGAA
Statistics
Matches: 121, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
52 2 0.02
53 4 0.03
54 108 0.89
55 5 0.04
56 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.41
Consensus pattern (53 bp):
TACCCTCAATTTACAGAATTACCGTTTTACCCTCAGTTTACAAATTACCATTT
Found at i:67672459 original size:81 final size:81
Alignment explanation
Indices: 67672358--67672557 Score: 260
Period size: 81 Copynumber: 2.5 Consensus size: 81
67672348 ATTACCAAAG
* * *
67672358 TACCCTCAATTTACAGAATTACCGTTTTACCCTCAG-TTTACAGAATTACTATTTTACCCTC-GA
1 TACCCTCAATTTACAAAATTATCGTTTTACCCT-AGATTTACAGAATTACTAGTTTACCCTCAG-
* *
67672421 TTTATAGAATTACCGTTT
64 TTTACAAAATTACCGTTT
* ** *
67672439 TACCCTCGATTTGTAAAATTATCGTTTTACCCTTGATTTACAGAATTACTAGTTTACCCTCAGTT
1 TACCCTCAATTTACAAAATTATCGTTTTACCCTAGATTTACAGAATTACTAGTTTACCCTCAGTT
*
67672504 TACAAAATTATCGTTT
66 TACAAAATTACCGTTT
* *
67672520 TACCCTCAATTTACAGAATTATCGTTTTACCCTTGATT
1 TACCCTCAATTTACAAAATTATCGTTTTACCCTAGATT
67672558 GTGAAATTAC
Statistics
Matches: 103, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
80 1 0.01
81 101 0.98
82 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (81 bp):
TACCCTCAATTTACAAAATTATCGTTTTACCCTAGATTTACAGAATTACTAGTTTACCCTCAGTT
TACAAAATTACCGTTT
Found at i:67672592 original size:27 final size:27
Alignment explanation
Indices: 67672562--67672757 Score: 248
Period size: 27 Copynumber: 7.3 Consensus size: 27
67672552 TTGATTGTGA
*
67672562 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
67672589 AATTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
67672616 AATTACTGAAATACCCTTATAGGATAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
67672643 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
67672670 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
67672697 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
67672724 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
67672751 AATTACC
1 AATTACC
67672758 ATTTTGCCCC
Statistics
Matches: 144, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:67672994 original size:27 final size:26
Alignment explanation
Indices: 67672956--67673038 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
67672946 TGGAGGAAGC
*
67672956 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
67672983 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
67673009 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
67673036 GTT
1 GTT
67673039 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:67673371 original size:27 final size:27
Alignment explanation
Indices: 67673349--67673422 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
67673339 TAGGTGGGTT
*
67673349 TGCCACACTATCTGAT-TCTGGTGGCTC
1 TGCCACAATATCT-ATATCTGGTGGCTC
*
67673376 TGCCACAATATCTATATCTGGTGACTC
1 TGCCACAATATCTATATCTGGTGGCTC
* *
67673403 TGTCACGATATCTAT-TCTGG
1 TGCCACAATATCTATATCTGG
67673423 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 7 0.17
27 35 0.83
ACGTcount: A:0.20, C:0.26, G:0.19, T:0.35
Consensus pattern (27 bp):
TGCCACAATATCTATATCTGGTGGCTC
Found at i:67673549 original size:6 final size:6
Alignment explanation
Indices: 67673540--67673702 Score: 131
Period size: 6 Copynumber: 26.8 Consensus size: 6
67673530 TTGCATTCAC
* * *
67673540 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTTTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
67673589 -TTACTG ATTCTA ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTA
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
67673638 ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTTTG -TTACTG
1 ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
67673686 ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCT
67673703 CATTTTGGTT
Statistics
Matches: 125, Mismatches: 18, Indels: 28
0.73 0.11 0.16
Matches are distributed among these distances:
5 9 0.07
6 104 0.83
7 9 0.07
8 3 0.02
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:67673635 original size:61 final size:61
Alignment explanation
Indices: 67673540--67673709 Score: 236
Period size: 61 Copynumber: 2.8 Consensus size: 61
67673530 TTGCATTCAC
* *
67673540 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTTTGTTACTGAT-TCTA
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTTTGTTACTAATAT-TA
* * *
67673601 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTAATTCTGATTCTGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTTTGTTACTAATATTA
* * * *
67673662 ATTCTGATTCTGATTTTGTTA-CTGATTCTGATTCTGATTCTCATTTTG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTTTG
67673710 GTTCCCATTC
Statistics
Matches: 97, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
60 23 0.24
61 73 0.75
62 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (61 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTTTGTTACTAATATTA
Found at i:67673720 original size:30 final size:30
Alignment explanation
Indices: 67673540--67673723 Score: 192
Period size: 30 Copynumber: 6.1 Consensus size: 30
67673530 TTGCATTCAC
* * *
67673540 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTTTGTTAC-TCATTCTG
* *
67673571 ATTCTGATTCTGATTTTGTTACTGATTCTA
1 ATTCTGATTCTGATTTTGTTACTCATTCTG
* * *
67673601 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTTTGTTA-CTCATTCTG
* * *
67673632 ATTCTAATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTTTGTTACTCAT-TCTG
*
67673662 ATTCTGATTCTGATTTTGTTACTGATTCTG
1 ATTCTGATTCTGATTTTGTTACTCATTCTG
* *
67673692 ATTCTGATTCTCATTTTGGTT-CCCATTCTG
1 ATTCTGATTCTGATTTT-GTTACTCATTCTG
67673722 AT
1 AT
67673724 AATGTTTCTT
Statistics
Matches: 133, Mismatches: 16, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
29 1 0.01
30 82 0.62
31 50 0.38
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTTTGTTACTCATTCTG
Found at i:67682938 original size:39 final size:40
Alignment explanation
Indices: 67682843--67683044 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
67682833 TCGAATGATG
* *
67682843 TCCGGGCTAAGTCCCGAAGGC-TTT-TGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
67682882 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
*
67682921 TTCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
67682960 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
67683000 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
67683040 TCCGG
1 TCCGG
67683045 TTAAATTCCG
Statistics
Matches: 142, Mismatches: 12, Indels: 17
0.83 0.07 0.10
Matches are distributed among these distances:
38 25 0.18
39 41 0.29
40 73 0.51
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:67682977 original size:78 final size:80
Alignment explanation
Indices: 67682843--67683023 Score: 237
Period size: 78 Copynumber: 2.3 Consensus size: 80
67682833 TCGAATGATG
* *
67682843 TCCGGGCTAAGTCCCGAAGGC-TTTTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
67682907 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * **
67682921 TTCCGGGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
67682983 TTGTGCGAGTTACTATA
64 TTGTGCGAGTTACTATA
* *
67683000 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
67683024 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
77 1 0.01
78 60 0.67
79 29 0.32
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:67690282 original size:2 final size:2
Alignment explanation
Indices: 67690275--67690339 Score: 51
Period size: 2 Copynumber: 32.0 Consensus size: 2
67690265 CGGCTCTTGC
** * * *
67690275 AT AT AT AT AT AT AT AT AT AT AT AT GC AC AT AT GT AT -T GGT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
*
67690317 GAC AT AT AT AT AT AT AT AT AT AT
1 -AT AT AT AT AT AT AT AT AT AT AT
67690340 CATCTCAAGG
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
1 1 0.02
2 48 0.94
3 2 0.04
ACGTcount: A:0.43, C:0.05, G:0.08, T:0.45
Consensus pattern (2 bp):
AT
Found at i:67691098 original size:40 final size:40
Alignment explanation
Indices: 67691014--67691198 Score: 220
Period size: 40 Copynumber: 4.7 Consensus size: 40
67691004 TCGAATGATG
* *
67691014 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
67691053 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
67691094 TCCGGGCTAAG-CCCGAAGGCATTTG-GTCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTG-CGAGTTACTAAT
*
67691133 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
67691172 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
67691199 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 10, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
38 1 0.01
39 35 0.28
40 80 0.63
41 11 0.09
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:67691150 original size:79 final size:82
Alignment explanation
Indices: 67691014--67691198 Score: 240
Period size: 79 Copynumber: 2.3 Consensus size: 82
67691004 TCGAATGATG
*
67691014 TCCGGGCTAAGTCCCGAAGGC-TTT-GTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCAT
67691077 TTGTGCGAGTTACTA-A
66 TTGTGCGAGTTACTATA
* * **
67691093 TTCCGGGCTAAG-CCCGAAGGCATTTGGT-C-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGC
67691154 ATTTGTGCGAGTTACTATA
64 ATTTGTGCGAGTTACTATA
* *
67691173 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67691199 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
78 1 0.01
79 60 0.65
80 30 0.32
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCAT
TTGTGCGAGTTACTATA
Found at i:67691220 original size:79 final size:78
Alignment explanation
Indices: 67691015--67691231 Score: 228
Period size: 79 Copynumber: 2.7 Consensus size: 78
67691005 CGAATGATGT
** * *
67691015 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
67691078 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
** *
67691095 CCGGGCTAAG-CCCGAAGGCATTTGGTCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
67691158 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* *
67691174 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTT-AAGTCCGAAGG
67691232 TATGTGATTC
Statistics
Matches: 117, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
78 3 0.03
79 68 0.58
80 46 0.39
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:67695264 original size:40 final size:40
Alignment explanation
Indices: 67695180--67695362 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
67695170 TCGAATGATG
* *
67695180 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
67695219 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
67695260 TCCGGGCTAAG-CCCGAAGGCATTT-TGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
67695298 TCC-GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
67695336 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
67695363 ACGAGTAGCT
Statistics
Matches: 125, Mismatches: 10, Indels: 16
0.83 0.07 0.11
Matches are distributed among these distances:
37 6 0.05
38 30 0.24
39 25 0.20
40 54 0.43
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:67695379 original size:78 final size:76
Alignment explanation
Indices: 67695181--67695394 Score: 238
Period size: 77 Copynumber: 2.7 Consensus size: 76
67695171 CGAATGATGT
* * *
67695181 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATT-TGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATTT
*
67695245 GTGCGAGTTACTAATT
61 GTGCGAGTTACTAATA
*
67695261 CCGGGCTAAG-CCCGAAGGCATTTTGCGAGTTA-CTAAATCCGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCA-TTTGCGAG-TAGCTATATCCGGTTAAGT-CCGAAGGCATTTGT
67695324 GCGAGTTACT-ATAA
63 GCGAGTTACTAAT-A
* *
67695338 CCGGGCTATGTCCCGAAGGCATTTGACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTG-CGAGTAGCTATATCCGGTT-AAGTCCGAAGG
67695395 TATGTGATTC
Statistics
Matches: 117, Mismatches: 8, Indels: 20
0.81 0.06 0.14
Matches are distributed among these distances:
76 3 0.03
77 43 0.37
78 43 0.37
79 16 0.14
80 12 0.10
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (76 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTGCG
AGTTACTAATA
Found at i:67703484 original size:79 final size:81
Alignment explanation
Indices: 67703344--67703528 Score: 245
Period size: 79 Copynumber: 2.3 Consensus size: 81
67703334 TCAATTGATG
* *
67703344 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATTCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
67703408 TGTCCGAGTTACTA-A
66 TGTCCGAGTTACTATA
* **
67703423 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
*
67703485 TTTGTGCGAGTTACTATA
64 TTTGTCCGAGTTACTATA
* *
67703503 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67703529 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.63
80 33 0.35
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTCCGAGTTACTATA
Found at i:67703542 original size:40 final size:40
Alignment explanation
Indices: 67703345--67703528 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
67703335 CAATTGATGT
* * *
67703345 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * * *
67703385 TCGGACTAAGAT-CCGAAGGCATTTGTCCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
67703425 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
67703463 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
67703504 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
67703529 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
39 34 0.28
40 80 0.65
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:67703550 original size:79 final size:79
Alignment explanation
Indices: 67703345--67703561 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
67703335 CAATTGATGT
** * * * **
67703345 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATTCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-AAGTTACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
67703408 TGTCCGAGTTACTAATT
63 TGTCCGAGTTACTAATA
** *
67703425 CCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACAAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
67703490 GCGAGTTACT-ATAA
66 CCGAGTTACTAAT-A
* * * *
67703504 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACAAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
67703562 TATGTGATTC
Statistics
Matches: 117, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 73 0.62
80 41 0.35
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACAAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
CCGAGTTACTAATA
Found at i:67706230 original size:31 final size:31
Alignment explanation
Indices: 67706192--67706255 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
67706182 CCTTTTCATA
67706192 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
67706223 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
67706254 TT
1 TT
67706256 ACTATAAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:67706590 original size:24 final size:23
Alignment explanation
Indices: 67706470--67706588 Score: 193
Period size: 23 Copynumber: 5.1 Consensus size: 23
67706460 CCTAGCCTCT
* *
67706470 TTTAATAACTGGGGAAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
67706493 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
67706517 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
67706540 TTAAATAGCTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
67706563 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
67706586 TTT
1 TTT
67706589 TACACTTCCT
Statistics
Matches: 89, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
23 68 0.76
24 21 0.24
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:67706665 original size:20 final size:20
Alignment explanation
Indices: 67706640--67706677 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
67706630 TATGATTACA
67706640 TCATGTGCATATCATACACG
1 TCATGTGCATATCATACACG
67706660 TCATGTGCATATCATACA
1 TCATGTGCATATCATACA
67706678 TACCATGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (20 bp):
TCATGTGCATATCATACACG
Found at i:67706684 original size:20 final size:20
Alignment explanation
Indices: 67706641--67706685 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
67706631 ATGATTACAT
**
67706641 CATGTGCATATCATACACGT
1 CATGTGCATATCATACACAC
*
67706661 CATGTGCATATCATACATAC
1 CATGTGCATATCATACACAC
67706681 CATGT
1 CATGT
67706686 TTATCAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.31
Consensus pattern (20 bp):
CATGTGCATATCATACACAC
Found at i:67707205 original size:8 final size:8
Alignment explanation
Indices: 67707192--67707219 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
67707182 AAATGCCAGA
67707192 ATTTCGGC
1 ATTTCGGC
67707200 ATTTCGGC
1 ATTTCGGC
67707208 ATTTCGGC
1 ATTTCGGC
67707216 ATTT
1 ATTT
67707220 ATCGCTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.43
Consensus pattern (8 bp):
ATTTCGGC
Found at i:67709391 original size:42 final size:42
Alignment explanation
Indices: 67709319--67709410 Score: 112
Period size: 42 Copynumber: 2.2 Consensus size: 42
67709309 TGGCCCATAG
** ** * *
67709319 GCCCATTTCAATATCACATGTAATGTCAATGGATGTGTGCAA
1 GCCCATTTCAATATCACATAAAATACCAATGAATGTATGCAA
*
67709361 GCCCATTTCAATATCATATAAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATAAAATACCAATGAATGTATGCAA
*
67709403 GCCTATTT
1 GCCCATTT
67709411 GGGGAGACTA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATAAAATACCAATGAATGTATGCAA
Found at i:67709627 original size:26 final size:26
Alignment explanation
Indices: 67709543--67709704 Score: 215
Period size: 26 Copynumber: 6.3 Consensus size: 26
67709533 CTGGAGGCCT
67709543 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
* **
67709567 AACCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
*
67709592 AGCCCTTTTCAATAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
* ** *
67709618 AGCCATTTTCGGTAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
67709644 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
67709670 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
67709696 AGCCCTTTT
1 AGCCCTTTT
67709705 GCACTTCCTC
Statistics
Matches: 121, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
23 5 0.04
24 4 0.03
25 31 0.26
26 81 0.67
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:67709779 original size:20 final size:20
Alignment explanation
Indices: 67709754--67709820 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
67709744 TTATGAATAC
67709754 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
67709774 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
67709794 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
67709814 ATCATGT
1 ATCATGT
67709821 ATATCATATC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:67710595 original size:26 final size:28
Alignment explanation
Indices: 67710551--67710602 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
67710541 TACAAGGGTA
67710551 TTACGGTCACTTTACCCTA-TAGGGGCT
1 TTACGGTCACTTTACCCTATTAGGGGCT
**
67710578 TTACGGTCTTTTTA-CCTATTAGGGG
1 TTACGGTCACTTTACCCTATTAGGGG
67710603 TATTTTAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.38
Consensus pattern (28 bp):
TTACGGTCACTTTACCCTATTAGGGGCT
Done.