Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 239 of 444
Found at i:67710654 original size:27 final size:27
Alignment explanation
Indices: 67710624--67711337 Score: 238
Period size: 27 Copynumber: 26.4 Consensus size: 27
67710614 TTTCATCCTA
* *
67710624 CAAGGGTGTTTTGGTAAATTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* **
67710651 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
67710678 TAGGGGTATTTTGGTAATTTTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** ** *
67710705 TGAGGGTATTTCAGTAATTTAACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
67710731 CTAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTACAAAT
* * * **
67710758 CTAGGGGTGTTTTGGTAATTCTACCCTAT
1 C-AAGGGTATTTTGGTAATTTTA-CAAAT
* * *
67710787 -AGGGGTATTTTAGTAATTTCAC-AAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* **** **
67710812 CGAGGGTAAAACGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
***** * **
67710839 CAAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
***** * *
67710866 CAAGGGTAAAACAGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
67710893 CGAGGGT-CTTTGGTAATTTTTACAAGT
1 CAAGGGTATTTTGGTAA-TTTTACAAAT
* ***
67710920 CGAGGGTATTTCAATAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
67710947 CAGGGGGTATTTTAGTAATTTTACAAAC
1 CA-AGGGTATTTTGGTAATTTTACAAAT
* * *
67710975 CAGGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ***
67711002 CAGGGGTATTTTGGTAATTTTATTGAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** *
67711029 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
** * ** *
67711056 CAAGGGTATTTAAGTAATTGTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** * **
67711083 CGAGGGTAAAATGGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* **** **
67711110 CGAGGGTAAGACGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** * *
67711137 CGAGGGTAAAATGGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** * **
67711164 CGAGGGTAAAATGGTAATTCTATCTTA-
1 CAAGGGTATTTTGGTAATTTTA-CAAAT
**
67711191 C-AGGAGTATTTCAGTAATTTTACAAAAT
1 CAAGG-GTATTTTGGTAATTTTAC-AAAT
* **
67711219 CGAGGGTATTTCAGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
** * *
67711245 CTGGGGGTATTTCGGTAATTTTGCAAAT
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* * * *
67711273 CGAGGATATTTGGGTAATTTTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*** * *
67711300 TGGGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
67711327 CGAGGGTATTT
1 CAAGGGTATTT
67711338 CAATAATTTG
Statistics
Matches: 548, Mismatches: 123, Indels: 32
0.78 0.17 0.05
Matches are distributed among these distances:
25 2 0.00
26 24 0.04
27 467 0.85
28 52 0.09
29 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.37
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:67711203 original size:271 final size:269
Alignment explanation
Indices: 67710812--67711320 Score: 650
Period size: 271 Copynumber: 1.9 Consensus size: 269
67710802 ATTTCACAAT
*
67710812 CGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAA
1 CGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAA
***
67710877 CAGTAATTCTATAAATCGAGGGTCTTTGGTAATTTTTACAAGTCGAGGGTATTTCAATAATTTTA
66 CAGTAATTCTATAAATCGAGGGTAAATGGTAATTTTTACAAG-CGA-GGTATTTCAATAATTTTA
* * *
67710942 C-AAATCAGGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACC-AG
129 CAAAATC-GAGGGTATTTCAGTAATTTTACAAACCAGGGGTATTTCAGTAATTTTACAAACCGA-
* * ** *
67711005 GGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTAAG
192 GGATATTTGGGTAATTTTATAAATCGAGGGTACTTTGGTAATTTTGTAAACCAAGGGTATTTAAG
67711070 TAATTGTGTAAAC
257 TAATTGTGTAAAC
* * * * * *
67711083 CGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAGACGGTAATTTTGTAAATCGAGGGTAAAA
1 CGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAA
** *
67711148 TGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATCTTAC-AG-GA-GTATTTCAGTAATT
66 CAGTAATTCTATAAATCGAGGGT-AAATGGTAA-T-T-T-TTACAAGCGAGGTATTTCAATAATT
** * * *
67711210 TTACAAAATCGAGGGTATTTCAGTAATTTTACAAACTGGGGGTATTTCGGTAATTTTGCAAATCG
126 TTACAAAATCGAGGGTATTTCAGTAATTTTACAAACCAGGGGTATTTCAGTAATTTTACAAACCG
* *
67711275 AGGATATTTGGGTAATTTTATAAATTGGGGGTACTTTGGTAATTTT
191 AGGATATTTGGGTAATTTTATAAATCGAGGGTACTTTGGTAATTTT
67711321 ACAAGTCGAG
Statistics
Matches: 203, Mismatches: 28, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
271 180 0.89
272 12 0.06
273 3 0.01
274 1 0.00
275 3 0.01
276 4 0.02
ACGTcount: A:0.33, C:0.09, G:0.23, T:0.35
Consensus pattern (269 bp):
CGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAA
CAGTAATTCTATAAATCGAGGGTAAATGGTAATTTTTACAAGCGAGGTATTTCAATAATTTTACA
AAATCGAGGGTATTTCAGTAATTTTACAAACCAGGGGTATTTCAGTAATTTTACAAACCGAGGAT
ATTTGGGTAATTTTATAAATCGAGGGTACTTTGGTAATTTTGTAAACCAAGGGTATTTAAGTAAT
TGTGTAAAC
Found at i:67716508 original size:40 final size:40
Alignment explanation
Indices: 67716461--67716589 Score: 222
Period size: 40 Copynumber: 3.2 Consensus size: 40
67716451 TAACAACCAG
*
67716461 CACGAATGCCTTCGGGGCTTAACCCGGTTATAATAACCCA
1 CACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCA
* *
67716501 CATGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCG
1 CACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCA
*
67716541 CACGAATGCCTTCGGGACTTTACCCGGTTATAATAACCCA
1 CACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCA
67716581 CACGAATGC
1 CACGAATGC
67716590 TATGCACATA
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 83 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.23
Consensus pattern (40 bp):
CACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCA
Found at i:67719942 original size:28 final size:29
Alignment explanation
Indices: 67719896--67720017 Score: 156
Period size: 29 Copynumber: 4.2 Consensus size: 29
67719886 GTGACGAGAT
* *
67719896 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* *
67719925 TGGCACTAA-TGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
67719953 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* * *
67719982 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
67720011 CGGCACT
1 TGGCACT
67720018 GGTGTGCGAG
Statistics
Matches: 83, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
28 27 0.33
29 56 0.67
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:67719989 original size:57 final size:58
Alignment explanation
Indices: 67719897--67720017 Score: 163
Period size: 57 Copynumber: 2.1 Consensus size: 58
67719887 TGACGAGATT
* * * ** *
67719897 GGCACTAAGTGTGCGTGCTGGAAATATATGGCACTA-ATGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAAAATATGACACTATATGTGCAAGCTGGAAAAATAA
* *
67719954 GGCACTAAGTGTGCATGCTGGAAAAATATGACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATATGACACTATATGTGCAAGCTGGAAAAATAA
67720012 GGCACT
1 GGCACT
67720018 GGTGTGCGAG
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
57 33 0.60
58 22 0.40
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (58 bp):
GGCACTAAGTGTGCATGCTGGAAAAATATGACACTATATGTGCAAGCTGGAAAAATAA
Found at i:67722710 original size:29 final size:29
Alignment explanation
Indices: 67722677--67722808 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
67722667 GTGACGAGAT
*
67722677 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
67722706 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
67722735 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
67722764 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
67722793 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
67722809 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:67725303 original size:28 final size:30
Alignment explanation
Indices: 67725263--67725335 Score: 107
Period size: 30 Copynumber: 2.5 Consensus size: 30
67725253 AAATTTGTAC
*
67725263 AGCACTAAGTGTGCGAG-T-TTGAT-TATAT
1 AGCACTAAGTGTGCGAGCTAAT-ATATATAT
67725291 AGCACTAAGTGTGCGAGCTAATATATATAT
1 AGCACTAAGTGTGCGAGCTAATATATATAT
67725321 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
67725336 GACTCAATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 17 0.41
29 3 0.07
30 21 0.51
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.30
Consensus pattern (30 bp):
AGCACTAAGTGTGCGAGCTAATATATATAT
Found at i:67728804 original size:523 final size:528
Alignment explanation
Indices: 67727746--67728804 Score: 1866
Period size: 523 Copynumber: 2.0 Consensus size: 528
67727736 CACAAATAAG
* * *
67727746 TCGAGGGCGACTGCGGGATTTCCATTAGAGCACGACCATCGATGGACTCACGAGCTACTTCGGTG
1 TCGAGGGCGACTGCGGGATTTCCATTAGAGCACGACCATCGACGGACTCACGAGCTACATCAGTG
*
67727811 CTAGTGTGGGCAATAATCATCAAGAAAAGCCTGAATGCCCCCAGTGTGGAAGACGACACCTAGGT
66 CTAGTGTGGGCAATAATCATCAAGAAAAGCCTGAATGCCCCCAATGTGGAAGACGACACCTAGGT
67727876 GAATGTTGGGGTAAGTCTGTTAATAGGGCCTGTTATGGATGCGGTTCGAAGGACCACTTCATTAG
131 GAATGTTGGGGTAAGTCTGTTAATAGGGCCTGTTATGGAT-CGGTTCGAAGGACCACTTCATTAG
67727941 AGATTGCACGGAGCTAGATGAGAAGAATAAGATGCAAGGTGCAAGACCTAGTGGAACGACGGCTA
195 AGATTGCACGGAGCTAGATGAGAAGAATAAGATGCAAGGTGCAAGACCTAGTGG-ACGACGGCTA
67728006 GAGGTAGGCCCCCGAGAATTTCTAGAGGTAGGGGTGGTAATCAGAGAGGAGCCTCTGATACGGCT
259 GAGGTAGGCCCCCGAG-ATTTCTAGAGGTAGGGGTGGTAATCAGAGAGGAGCCTCTGATACGGCT
* *
67728071 GTTCAATCCGAGACTCGTGCTCTTGCTAGAGCATATGCCATCCGCGCACGAGAGGAGGCATCCTC
323 GTTCAATCCGAGACCCGTGCTCCTGCTAGAGCATATGCCATCCGCGCACGAGAGGAGGCATCCTC
67728136 CCCTGACGTTATCACTGGTACTTTTACTCTCTTTGATACTAGTGTGATTGCATTGATTGACCCCG
388 CCCTGACGTTATCACTGGTACTTTTACTCTCTTTGATACTAGTGTGATTGCATTGATTGACCCCG
67728201 GCTCTACTCATTCATATGTATGTGAAACCTTAGCATCCAGTAAGACTCTACCTGTTGAGTCTACT
453 GCTCTACTCATTCATATGTATGTGAAACCTTAGCATCCAGTAAGACTCTACCTGTTGAGTCTACT
67728266 GAGTTCGTAAT
518 GAGTTCGTAAT
* * * *
67728277 TCGAGGGCGATTGCGGGAATTTCCATTAGAGCCCGACCATTGACGGACTCCCGAGCTACATCAGT
1 TCGAGGGCGACTGCGGG-ATTTCCATTAGAGCACGACCATCGACGGACTCACGAGCTACATCAGT
* * *
67728342 AGCTAGTGTGGGCAATAATCGTCAAG-AGAGACCTGAATGTCCCCAATGTGGAAGACGACACCTA
65 -GCTAGTGTGGGCAATAATCATCAAGAAAAG-CCTGAATGCCCCCAATGTGGAAGACGACACCTA
67728406 GGTGAATGTTGGGGTAAGTCTGTT-A-AGGGCCTGTTATGGAT-GGTTCGAAGGACCACTTCATT
128 GGTGAATGTTGGGGTAAGTCTGTTAATAGGGCCTGTTATGGATCGGTTCGAAGGACCACTTCATT
67728468 AG-GATTGCACGGAGCTAGATGAGAAGAATAAGATGCAAGGTGCAAGACCTAGTGG-CGACGGCT
193 AGAGATTGCACGGAGCTAGATGAGAAGAATAAGATGCAAGGTGCAAGACCTAGTGGACGACGGCT
67728531 AGAGGTAGGCCCCCGAG-TTTC-AGGAGGTAGGGGTGGTAATCAGAGAGGAGCC-CTGATACGGC
258 AGAGGTAGGCCCCCGAGATTTCTA-GAGGTAGGGGTGGTAATCAGAGAGGAGCCTCTGATACGGC
*
67728593 TGTTCGATCCGAGACCCGTGCTCCTGCTAGAGCATATGCCATCCGCGCACGAGAGGAGGCATCCT
322 TGTTCAATCCGAGACCCGTGCTCCTGCTAGAGCATATGCCATCCGCGCACGAGAGGAGGCATCCT
67728658 CCCCTGACGTTATCACTGGTACTTTTACTCTCTTTGATACTAGTGTGATTGCATTGATTGACCCC
387 CCCCTGACGTTATCACTGGTACTTTTACTCTCTTTGATACTAGTGTGATTGCATTGATTGACCCC
67728723 GGCTCTACTCATTCATATGTATGTGAAACCTTAGCATCCAGTAAGACTCTACCTGTTGAGTCTAC
452 GGCTCTACTCATTCATATGTATGTGAAACCTTAGCATCCAGTAAGACTCTACCTGTTGAGTCTAC
67728788 TGAGTTCGTAAT
517 TGAGTTCGTAAT
67728800 TCGAG
1 TCGAG
67728805 TGTCAAACCC
Statistics
Matches: 510, Mismatches: 14, Indels: 16
0.94 0.03 0.03
Matches are distributed among these distances:
523 220 0.43
524 33 0.06
526 25 0.05
528 53 0.10
529 23 0.05
531 32 0.06
532 45 0.09
533 79 0.15
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (528 bp):
TCGAGGGCGACTGCGGGATTTCCATTAGAGCACGACCATCGACGGACTCACGAGCTACATCAGTG
CTAGTGTGGGCAATAATCATCAAGAAAAGCCTGAATGCCCCCAATGTGGAAGACGACACCTAGGT
GAATGTTGGGGTAAGTCTGTTAATAGGGCCTGTTATGGATCGGTTCGAAGGACCACTTCATTAGA
GATTGCACGGAGCTAGATGAGAAGAATAAGATGCAAGGTGCAAGACCTAGTGGACGACGGCTAGA
GGTAGGCCCCCGAGATTTCTAGAGGTAGGGGTGGTAATCAGAGAGGAGCCTCTGATACGGCTGTT
CAATCCGAGACCCGTGCTCCTGCTAGAGCATATGCCATCCGCGCACGAGAGGAGGCATCCTCCCC
TGACGTTATCACTGGTACTTTTACTCTCTTTGATACTAGTGTGATTGCATTGATTGACCCCGGCT
CTACTCATTCATATGTATGTGAAACCTTAGCATCCAGTAAGACTCTACCTGTTGAGTCTACTGAG
TTCGTAAT
Found at i:67733782 original size:31 final size:31
Alignment explanation
Indices: 67733699--67733785 Score: 94
Period size: 31 Copynumber: 2.9 Consensus size: 31
67733689 AAATTTGTAC
*
67733699 AGCACTAAGTGTGCGAG-T--TTGAT-TATAT
1 AGCACTAAGTGTGCGAGCTCAAT-ATATATAT
*
67733727 AGCACTAAGTGTGCGAGCTGAATATATATAT
1 AGCACTAAGTGTGCGAGCTCAATATATATAT
*
67733758 AGCACTAAGTGTGTG-GACTCAATATATA
1 AGCACTAAGTGTGCGAG-CTCAATATATA
67733786 CTTTTGCATC
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
28 17 0.33
29 1 0.02
30 3 0.06
31 30 0.59
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (31 bp):
AGCACTAAGTGTGCGAGCTCAATATATATAT
Found at i:67733784 original size:29 final size:31
Alignment explanation
Indices: 67733699--67733770 Score: 98
Period size: 31 Copynumber: 2.4 Consensus size: 31
67733689 AAATTTGTAC
*
67733699 AGCACTAAGTGTGCGAG-T--TTGAT-TATAT
1 AGCACTAAGTGTGCGAGCTGAAT-ATATATAT
67733727 AGCACTAAGTGTGCGAGCTGAATATATATAT
1 AGCACTAAGTGTGCGAGCTGAATATATATAT
67733758 AGCACTAAGTGTG
1 AGCACTAAGTGTG
67733771 TGGACTCAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
28 17 0.44
29 1 0.03
30 2 0.05
31 19 0.49
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.31
Consensus pattern (31 bp):
AGCACTAAGTGTGCGAGCTGAATATATATAT
Found at i:67738091 original size:42 final size:42
Alignment explanation
Indices: 67738025--67738179 Score: 161
Period size: 42 Copynumber: 3.7 Consensus size: 42
67738015 CCGAGGCTAT
* *
67738025 GTGTAAGACCATATCTGAGATATGGTATC-ATTATGAGATTTC
1 GTGTAAGACCATATCTGAGATATGGCATCGA-TATGAGATCTC
* *
67738067 GTGTATGACCATATCT-AGGGTATGGCATCGATATGAGATCTC
1 GTGTAAGACCATATCTGA-GATATGGCATCGATATGAGATCTC
* * * * * *
67738109 GTATAAGACCATAGCTGGGCTATTAGCATCGATACGAGATCTC
1 GTGTAAGACCATATCTGAGATA-TGGCATCGATATGAGATCTC
* *
67738152 ATGTAAGACCATATCTGGGATATGGCAT
1 GTGTAAGACCATATCTGAGATATGGCAT
67738180 TGGTGTAGTA
Statistics
Matches: 93, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
41 1 0.01
42 55 0.59
43 37 0.40
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATATCTGAGATATGGCATCGATATGAGATCTC
Found at i:67742251 original size:18 final size:17
Alignment explanation
Indices: 67742230--67742284 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 17
67742220 ACAATTCTTT
67742230 TCTCTTCTTCTTTTCTCC
1 TCTCTTCTTCTTTTCT-C
*
67742248 TCTCTTCATCTATTT-TC
1 TCTCTTCTTCT-TTTCTC
*
67742265 TCTTCCTCTTCTTTTC-C
1 TC-TCTTCTTCTTTTCTC
67742282 TCT
1 TCT
67742285 ACAGCCGAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
16 1 0.03
17 9 0.29
18 18 0.58
19 3 0.10
ACGTcount: A:0.04, C:0.36, G:0.00, T:0.60
Consensus pattern (17 bp):
TCTCTTCTTCTTTTCTC
Found at i:67743377 original size:27 final size:26
Alignment explanation
Indices: 67743347--67743404 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
67743337 TACTAAAATA
* * *
67743347 CCCTAAGTATAAAAATTACCATTATGC
1 CCCTAAGT-GAAAAATGACCATTATAC
* *
67743374 CCCTATGTGCAAAATGACCATTATAC
1 CCCTAAGTGAAAAATGACCATTATAC
67743400 CCCTA
1 CCCTA
67743405 GGGTTGATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.36, C:0.28, G:0.09, T:0.28
Consensus pattern (26 bp):
CCCTAAGTGAAAAATGACCATTATAC
Found at i:67743593 original size:27 final size:27
Alignment explanation
Indices: 67743512--67743593 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
67743502 AAGCATTCTG
*
67743512 GTGGCTCTGCCATAAATATCTG-ATCT
1 GTGGCTCTGCCACAAATATCTGTATCT
* * *
67743538 AGTGGCTCTGCCACAAATATTTATTTCT
1 -GTGGCTCTGCCACAAATATCTGTATCT
* *
67743566 GTGGCCCTGCCACAATTATCTGTATCT
1 GTGGCTCTGCCACAAATATCTGTATCT
67743593 G
1 G
67743594 GTGACTCTAT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
27 42 0.93
28 3 0.07
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.35
Consensus pattern (27 bp):
GTGGCTCTGCCACAAATATCTGTATCT
Found at i:67746689 original size:18 final size:17
Alignment explanation
Indices: 67746668--67746718 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 17
67746658 ACAATTCTTT
67746668 TCTCTTCTTCTTTTCTCC
1 TCTCTTCTTCTTTTCT-C
*
67746686 TCTCTTCATCTATTT-TC
1 TCTCTTCTTCT-TTTCTC
67746703 TCTTCTTCTTCTTTTC
1 TC-TCTTCTTCTTTTC
67746719 CTTTATAGCC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
17 6 0.21
18 19 0.68
19 3 0.11
ACGTcount: A:0.04, C:0.33, G:0.00, T:0.63
Consensus pattern (17 bp):
TCTCTTCTTCTTTTCTC
Found at i:67747815 original size:27 final size:27
Alignment explanation
Indices: 67747785--67747842 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
67747775 TACTAAAATA
* *
67747785 CCCTAAGTATG-AAAATTACCATTATGC
1 CCCTAAG-ATGCAAAATGACCATTATAC
*
67747812 CCCT-AGGTGCAAAATGACCATTATAC
1 CCCTAAGATGCAAAATGACCATTATAC
67747838 CCCTA
1 CCCTA
67747843 GGGTTGATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 2 0.08
26 20 0.77
27 4 0.15
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (27 bp):
CCCTAAGATGCAAAATGACCATTATAC
Found at i:67748014 original size:28 final size:28
Alignment explanation
Indices: 67747945--67748060 Score: 148
Period size: 28 Copynumber: 4.2 Consensus size: 28
67747935 GGAGGAAGCA
67747945 TTCTGGTGGCTCTGCCACAAATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
67747972 ATCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* *
67748000 TTCTGGTGGCCCTGCCACAATTATCTGTT
1 TTCTGGTGGCTCTGCCACAAATATCTG-T
* **
67748029 TTCTGGTGACTCTATCAC-AATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
67748055 TTCTGG
1 TTCTGG
67748061 CGGCCATGCT
Statistics
Matches: 78, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
26 6 0.08
27 26 0.33
28 31 0.40
29 15 0.19
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:67748059 original size:55 final size:55
Alignment explanation
Indices: 67747945--67748065 Score: 147
Period size: 55 Copynumber: 2.2 Consensus size: 55
67747935 GGAGGAAGCA
* * *
67747945 TTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCCCTGCCACAAATATCTGATCTGGTGACTCTACCACAAATATCTGT
* * *
67748000 TTCTGGTGGCCCTGCCACAATTATCTGTTTTCTGGTGACTCTATCAC-AATATCTG-
1 TTCTGGTGGCCCTGCCACAAATATCTG--ATCTGGTGACTCTACCACAAATATCTGT
*
67748055 TTCTGGCGGCC
1 TTCTGGTGGCC
67748066 ATGCTGCATA
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
55 35 0.61
56 8 0.14
57 14 0.25
ACGTcount: A:0.17, C:0.26, G:0.21, T:0.35
Consensus pattern (55 bp):
TTCTGGTGGCCCTGCCACAAATATCTGATCTGGTGACTCTACCACAAATATCTGT
Found at i:67753670 original size:9 final size:9
Alignment explanation
Indices: 67753651--67753682 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
67753641 AAGCTTGGGG
67753651 TTTGTTGAAT
1 TTTG-TGAAT
67753661 TTTGTGAAT
1 TTTGTGAAT
67753670 TTTGTGAAT
1 TTTGTGAAT
67753679 TTTG
1 TTTG
67753683 GGGCTAATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 18 0.82
10 4 0.18
ACGTcount: A:0.19, C:0.00, G:0.22, T:0.59
Consensus pattern (9 bp):
TTTGTGAAT
Found at i:67753997 original size:11 final size:11
Alignment explanation
Indices: 67753951--67753999 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
67753941 TTGTTCGATC
67753951 ATGATTCGACA
1 ATGATTCGACA
*
67753962 ACGATTCGACA
1 ATGATTCGACA
* *
67753973 GTAATTCGA-A
1 ATGATTCGACA
*
67753983 ATGATTCGACT
1 ATGATTCGACA
67753994 ATGATT
1 ATGATT
67754000 TGGTATTGGA
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
10 8 0.27
11 22 0.73
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (11 bp):
ATGATTCGACA
Found at i:67757362 original size:93 final size:93
Alignment explanation
Indices: 67757250--67757421 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67757240 GCCCATAAGT
* *
67757250 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67757315 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
67757343 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67757408 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
67757422 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67757417 original size:46 final size:46
Alignment explanation
Indices: 67757242--67757417 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
67757232 TGTAACCCGC
* * *
67757242 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
67757288 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
67757338 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
67757381 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67757418 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:67759845 original size:30 final size:30
Alignment explanation
Indices: 67759801--67759889 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
67759791 CAAAGATAAC
67759801 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
67759830 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
67759860 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
67759890 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:67759849 original size:15 final size:15
Alignment explanation
Indices: 67759801--67759880 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
67759791 CAAAGATAAC
*
67759801 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
67759815 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
67759830 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
67759845 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
67759860 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
67759875 AAGAAA
1 AAGAAA
67759881 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:67759889 original size:15 final size:15
Alignment explanation
Indices: 67759812--67759889 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
67759802 AGAAAACCGA
67759812 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
67759827 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
67759841 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
67759856 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
67759872 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
67759887 ATA
1 ATA
67759890 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:67762952 original size:93 final size:93
Alignment explanation
Indices: 67762840--67763011 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67762830 GCCCATAAGT
* *
67762840 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67762905 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
67762933 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67762998 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
67763012 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67763007 original size:46 final size:46
Alignment explanation
Indices: 67762832--67763007 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
67762822 TGTAACCCGC
* * *
67762832 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
67762878 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
67762928 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
67762971 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67763008 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:67769528 original size:54 final size:54
Alignment explanation
Indices: 67769454--67769684 Score: 268
Period size: 54 Copynumber: 4.3 Consensus size: 54
67769444 TAGAATACTT
** * *
67769454 TTGTTTACCAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCAT
1 TTGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCAC
*
67769508 TTGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCC
1 TTGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCAC
* * *
67769562 TAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCAC
1 TTGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCAC
* * * * ** * *
67769616 TGGTTTGT-GAATTACCGAAATA-CCCTCAATTTGTAAAACTACCAAAATACCCC
1 TTGTTTATAAAATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCAC
** *
67769669 TAATTTACAAAATTAC
1 TTGTTTATAAAATTAC
67769685 AGAAATATCC
Statistics
Matches: 153, Mismatches: 22, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
52 4 0.03
53 37 0.24
54 112 0.73
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (54 bp):
TTGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCAC
Found at i:67769680 original size:27 final size:27
Alignment explanation
Indices: 67769463--67769669 Score: 274
Period size: 27 Copynumber: 7.7 Consensus size: 27
67769453 TTTGTTTACC
67769463 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** * *
67769490 AAATTACTAAAATACCATTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
67769517 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
67769544 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
67769571 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
67769598 AAATTATCAAAATACCACTGGTTTGT-
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
67769624 GAATTACCGAAATA-CCCTCAATTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*
67769651 AAACTACCAAAATACCCCT
1 AAATTACCAAAATACCCCT
67769670 AATTTACAAA
Statistics
Matches: 154, Mismatches: 23, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
25 3 0.02
26 16 0.10
27 131 0.85
28 4 0.03
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:67769690 original size:27 final size:27
Alignment explanation
Indices: 67769625--67769691 Score: 66
Period size: 27 Copynumber: 2.5 Consensus size: 27
67769615 CTGGTTTGTG
* **
67769625 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACAGAAATACCCTCAATTTACAA
*
67769652 AACTACCA-AAATACCC-CTAATTTACAA
1 AATTA-CAGAAATACCCTC-AATTTACAA
67769679 AATTACAGAAATA
1 AATTACAGAAATA
67769692 TCCTTGACTT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
26 3 0.09
27 28 0.88
28 1 0.03
ACGTcount: A:0.48, C:0.22, G:0.04, T:0.25
Consensus pattern (27 bp):
AATTACAGAAATACCCTCAATTTACAA
Found at i:67769744 original size:27 final size:28
Alignment explanation
Indices: 67769672--67769746 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
67769662 ATACCCCTAA
*
67769672 TTTACAAAATTACAGAAATATCCTTGAC
1 TTTACAAAATTACTGAAATATCCTTGAC
* *
67769700 TTT-CTAAAAATTATTGAAATA-CCATTG-G
1 TTTAC--AAAATTACTGAAATATCC-TTGAC
67769728 TTTACAAAATTACTGAAAT
1 TTTACAAAATTACTGAAAT
67769747 GCCCTCAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
27 14 0.36
28 8 0.21
29 17 0.44
ACGTcount: A:0.43, C:0.13, G:0.08, T:0.36
Consensus pattern (28 bp):
TTTACAAAATTACTGAAATATCCTTGAC
Found at i:67769784 original size:27 final size:27
Alignment explanation
Indices: 67769748--67769891 Score: 173
Period size: 27 Copynumber: 5.3 Consensus size: 27
67769738 TACTGAAATG
* * * *
67769748 CCCTCAATTTGTAGAATGACCATTTTG
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
67769775 CCCTCGATTTATAGAATTAACGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
67769802 CCCTTGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
67769829 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
67769856 CCCTC-AGTTTATAAAATTACCATTTTA
1 CCCTCGA-TTTATAGAATTACCATTTTA
67769883 CCCTCGATT
1 CCCTCGATT
67769892 GTGAAATTAC
Statistics
Matches: 98, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 96 0.98
28 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:67769927 original size:27 final size:26
Alignment explanation
Indices: 67769896--67770233 Score: 347
Period size: 27 Copynumber: 12.6 Consensus size: 26
67769886 TCGATTGTGA
* *
67769896 AATTACTGAAATACCCCCGTAGGATAG
1 AATTACCGAAATACCCCTGTAGG-TAG
* ** *
67769923 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCGAAATACCCCT-GTAGGTAG
* ** *
67769950 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCGAAATACCCCT-GTAGGTAG
67769977 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGT-AGGTAG
*
67770004 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTA-GGTAG
*
67770031 AATTACC-AGAATATCCCTGTAGGATAG
1 AATTACCGA-AATACCCCTGTAGG-TAG
* *
67770058 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTA-GGTAG
*
67770085 AATTACCGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGT-AGGTAG
*
67770112 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTA-GGTAG
* * *
67770139 AATTATCGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTA-GGTAG
67770166 AATTACCGAAATA-CCCTGTAGGTAG
1 AATTACCGAAATACCCCTGTAGGTAG
** *
67770191 AATTACTAAAATACTCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGT-AGGTAG
*
67770218 AATTACCGAGATACCC
1 AATTACCGAAATACCC
67770234 TTATGGGGTA
Statistics
Matches: 267, Mismatches: 33, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
25 16 0.06
26 17 0.06
27 228 0.85
28 6 0.02
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.25
Consensus pattern (26 bp):
AATTACCGAAATACCCCTGTAGGTAG
Found at i:67770712 original size:22 final size:22
Alignment explanation
Indices: 67770682--67770743 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
67770672 AAGCCTTCTG
* *
67770682 ATTATGGCTTTATGTCAACCTAC
1 ATTATGGCTCTATGCCAACCT-C
*
67770705 A-TATGGCTCTGTGCCAACCTC
1 ATTATGGCTCTATGCCAACCTC
* *
67770726 ATTATGGCTGTGTGCCAA
1 ATTATGGCTCTATGCCAA
67770744 ACTTATTTGC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 2 0.06
22 31 0.91
23 1 0.03
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (22 bp):
ATTATGGCTCTATGCCAACCTC
Found at i:67771003 original size:27 final size:28
Alignment explanation
Indices: 67770909--67771010 Score: 95
Period size: 27 Copynumber: 3.8 Consensus size: 28
67770899 TATGTGGCTT
* * * *
67770909 TGCCACATTATCT-ATTTCTGGTGGCTA
1 TGCCACAATATCTGATATCTGGTGACTC
* * *
67770936 TGCCACAAATATTTG-T-CCTGGTGGCTC
1 TGCCAC-AATATCTGATATCTGGTGACTC
67770963 TGCCACAATATCTG-TATCTGGTGACTC
1 TGCCACAATATCTGATATCTGGTGACTC
*
67770990 TGTCACAATATCTGATATCTG
1 TGCCACAATATCTGATATCTG
67771011 AGCAGCAATG
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
26 8 0.13
27 43 0.68
28 12 0.19
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (28 bp):
TGCCACAATATCTGATATCTGGTGACTC
Found at i:67771179 original size:6 final size:6
Alignment explanation
Indices: 67771140--67771289 Score: 87
Period size: 6 Copynumber: 24.3 Consensus size: 6
67771130 TTGCATTCAC
* *
67771140 ATTCTG ATTTTTG ATTCT- ATTACCTG ATAT-TG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG
* * * * *
67771190 -TTACTG ATACTA ATTCTA ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* *
67771239 ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
67771288 AT
1 AT
67771290 AATGTTTCTT
Statistics
Matches: 112, Mismatches: 16, Indels: 32
0.70 0.10 0.20
Matches are distributed among these distances:
5 10 0.09
6 83 0.74
7 14 0.12
8 4 0.04
9 1 0.01
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:67771186 original size:31 final size:31
Alignment explanation
Indices: 67771140--67771280 Score: 185
Period size: 31 Copynumber: 4.5 Consensus size: 31
67771130 TTGCATTCAC
* *
67771140 ATTCTGATTTTTGATTCTATTACCTGATATTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
*
67771172 ATTCTGATTTTGATTCTGTTA-CTGATACTA
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
67771202 ATTCTAATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * *
67771233 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
67771264 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
67771281 AGTTCTGATA
Statistics
Matches: 98, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
30 27 0.28
31 64 0.65
32 7 0.07
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:67774947 original size:45 final size:43
Alignment explanation
Indices: 67774895--67775015 Score: 151
Period size: 41 Copynumber: 2.8 Consensus size: 43
67774885 ATGTGTTTTT
* *
67774895 GTGTAAGACCACT-TCTGGGACATTGGCATCGATATATGTGGTTAC
1 GTGTAAGACCACTGTCTAGGACATTGGCATCGATATA--TGATT-C
*
67774940 GTGTAAGACCA-TGTCTAGGATATTGGCATCG-TATATGATTC
1 GTGTAAGACCACTGTCTAGGACATTGGCATCGATATATGATTC
*
67774981 GTGTAAGACC-CTGTCTAGGACAGTGGCATCGATAT
1 GTGTAAGACCACTGTCTAGGACATTGGCATCGATAT
67775016 GAGATGACAT
Statistics
Matches: 68, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
41 29 0.43
42 7 0.10
44 5 0.07
45 27 0.40
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
GTGTAAGACCACTGTCTAGGACATTGGCATCGATATATGATTC
Found at i:67775379 original size:2 final size:2
Alignment explanation
Indices: 67775372--67775408 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
67775362 TATTTTGTTA
67775372 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
67775409 ACCATAAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:67779638 original size:6 final size:6
Alignment explanation
Indices: 67779627--67779819 Score: 186
Period size: 6 Copynumber: 31.8 Consensus size: 6
67779617 AACCAAAATG
*
67779627 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
67779675 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
*
67779724 AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC AGAATC
* *
67779772 AGAATC AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
67779820 GTGAATGCAA
Statistics
Matches: 157, Mismatches: 12, Indels: 36
0.77 0.06 0.18
Matches are distributed among these distances:
5 12 0.08
6 131 0.83
7 10 0.06
8 4 0.03
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:67779642 original size:30 final size:30
Alignment explanation
Indices: 67779606--67779788 Score: 204
Period size: 30 Copynumber: 6.3 Consensus size: 30
67779596 AAGAAACATT
* *
67779606 ATCAGAATT-GGAACCAAAATGAGAATCAGA
1 ATCAGAATTAGGAA-CAGAATCAGAATCAGA
* *
67779636 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
*
67779666 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATTAGGAACAGAATCAGAATCAGA
*
67779696 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATTAGG-AACAGAATCAGAATCAGA
67779727 ATCAG---T---AACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
*
67779751 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATTAGGAACAGAATCAGAATCAGA
67779781 ATCAGAAT
1 ATCAGAAT
67779789 CAGAATTACG
Statistics
Matches: 133, Mismatches: 8, Indels: 24
0.81 0.05 0.15
Matches are distributed among these distances:
24 21 0.16
27 1 0.01
28 1 0.01
29 1 0.01
30 82 0.62
31 27 0.20
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (30 bp):
ATCAGAATTAGGAACAGAATCAGAATCAGA
Found at i:67779727 original size:85 final size:85
Alignment explanation
Indices: 67779627--67779788 Score: 324
Period size: 85 Copynumber: 1.9 Consensus size: 85
67779617 AACCAAAATG
67779627 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
67779692 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTAGGTGAC
67779712 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
67779777 CAGAATCAGAAT
66 CAGAATCAGAAT
67779789 CAGAATTACG
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 77 1.00
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAGAATCAGAATTAGGTGAC
Found at i:67779806 original size:85 final size:85
Alignment explanation
Indices: 67779627--67779819 Score: 314
Period size: 85 Copynumber: 2.2 Consensus size: 85
67779617 AACCAAAATG
67779627 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
* *
67779692 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATCAGATGAC
67779712 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
67779777 CAGAATCAGAATCAGAATTACGTGAC
66 CAGAATCAGAATCAG----A--TGAC
67779803 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
67779820 GTGAATGCAA
Statistics
Matches: 100, Mismatches: 2, Indels: 6
0.93 0.02 0.06
Matches are distributed among these distances:
85 79 0.79
91 21 0.21
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAGAATCAGAATCAGATGAC
Found at i:67780008 original size:27 final size:27
Alignment explanation
Indices: 67779937--67780010 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
67779927 AGCATGGCTG
* *
67779937 CCAGAA-CAGATATTGTGACAGAGTCA
1 CCAGAATCAGATATTGTGGCAGAGCCA
*
67779963 CCAG-ATACAGATATTGTGGTAGAGCCA
1 CCAGAAT-CAGATATTGTGGCAGAGCCA
*
67779990 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATATTGTGGCA
67780011 AACCCACCTA
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 33 0.82
28 2 0.05
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.20
Consensus pattern (27 bp):
CCAGAATCAGATATTGTGGCAGAGCCA
Found at i:67780017 original size:27 final size:27
Alignment explanation
Indices: 67779961--67780018 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
67779951 GTGACAGAGT
* * * *
67779961 CACCAGATACAGATATTGTGGTAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
67779988 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
67780015 CACC
1 CACC
67780019 TAACAGAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.36, C:0.26, G:0.21, T:0.17
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:67780223 original size:22 final size:22
Alignment explanation
Indices: 67780175--67780233 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
67780165 GTAAATACGT
*
67780175 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
67780197 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
67780219 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
67780234 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:67780402 original size:27 final size:26
Alignment explanation
Indices: 67780321--67780403 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
67780311 TCGATCGGTC
* * *
67780321 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
*
67780347 ATACAGATATTGTGGCAGAGCCACTAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
67780374 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
67780401 AAC
1 AAC
67780404 GATTCCTCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.16
27 41 0.84
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:67780633 original size:27 final size:27
Alignment explanation
Indices: 67780603--67780797 Score: 219
Period size: 27 Copynumber: 7.2 Consensus size: 27
67780593 GGGCAAAATC
* * *
67780603 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* *
67780630 GTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* *
67780657 GTATTTTTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* * *
67780684 ATAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCG
* * *
67780711 GTAATTCTATCCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCG
* * *
67780738 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCG
* * *
67780765 GAAATTCTACCCTACAGGGGTATTTCT
1 GTAATTCTACCCTACAAGGGTATTTCG
67780792 GTAATT
1 GTAATT
67780798 TCACAATCAA
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 142 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCG
Found at i:67780665 original size:54 final size:54
Alignment explanation
Indices: 67780603--67780797 Score: 246
Period size: 54 Copynumber: 3.6 Consensus size: 54
67780593 GGGCAAAATC
* * *
67780603 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCG
* * *
67780657 GTATTTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTG
1 GTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCG
* * * * * *
67780711 GTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCG
* * * *
67780765 GAAATTCTACCCTACAGGGGTATTTCTGTAATT
1 GTAATTTTACCCTACAAGGGTATTTCGGTAATT
67780798 TCACAATCAA
Statistics
Matches: 121, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 121 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (54 bp):
GTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCG
Found at i:67780832 original size:27 final size:27
Alignment explanation
Indices: 67780802--67781210 Score: 464
Period size: 27 Copynumber: 15.1 Consensus size: 27
67780792 GTAATTTCAC
* *
67780802 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
67780829 AATCGAGGGTAAAATGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
67780856 AA-CTGAGGGT-AACCTAGTAATTTTGTA
1 AATC-GAGGGTAAAAC-GGTAATTCTGTA
* * **
67780883 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
67780910 AATTGAGGGTAAAACGGTAAATCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
67780937 AATTGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
67780964 AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
67780991 AATCGAGGGTAAAAAGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
67781018 AA-CTGAGGGTAAAACCGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
67781045 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
67781072 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * **
67781099 AATCGAGGGTAAAACAGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * **
67781126 AATCAAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
67781153 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
67781180 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
67781207 AATC
1 AATC
67781211 AGGAGTACTT
Statistics
Matches: 329, Mismatches: 47, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
26 4 0.01
27 320 0.97
28 5 0.02
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:67781255 original size:81 final size:81
Alignment explanation
Indices: 67780802--67781211 Score: 547
Period size: 81 Copynumber: 5.1 Consensus size: 81
67780792 GTAATTTCAC
* * * * *
67780802 AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGATAATTTTGTAAA-CTGAGGGT
1 AATCAAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGT
* *
67780866 -AACCTAGTAATTTTGTA
65 AAAAC-AGTAATTCTGTA
* * * * *
67780883 AATCAAGGGTAAAACGGTAATTTTACAAATTGAGGGTAAAACGGTAAATCTATAAATTGAGGGTA
1 AATCAAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
*
67780948 AAATAGTAATTCTGTA
66 AAACAGTAATTCTGTA
** * * * *
67780964 AATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAAGGTAATTCTGTAAA-CTGAGGGT
1 AATCAAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGT
*
67781028 AAAACCGTAATTCTGTA
65 AAAACAGTAATTCTGTA
*
67781045 AATCGAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
1 AATCAAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
* **
67781110 AAACAGTAATTTTAAA
66 AAACAGTAATTCTGTA
67781126 AATCAAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
1 AATCAAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
*
67781191 AAACGGTAATTCTGTA
66 AAACAGTAATTCTGTA
67781207 AATCA
1 AATCA
67781212 GGAGTACTTT
Statistics
Matches: 287, Mismatches: 38, Indels: 8
0.86 0.11 0.02
Matches are distributed among these distances:
81 284 0.99
82 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
AATCAAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
AAACAGTAATTCTGTA
Found at i:67786880 original size:28 final size:28
Alignment explanation
Indices: 67786839--67786917 Score: 113
Period size: 28 Copynumber: 2.8 Consensus size: 28
67786829 GCAATCAAAT
** *
67786839 ATGGCACTCGGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
67786867 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
67786895 ATGACACTTAGTGTGCGAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
67786918 CAAATGATTC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.28
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:67787357 original size:21 final size:22
Alignment explanation
Indices: 67787326--67787366 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
67787316 GAATGTATTG
*
67787326 TGATGTATGTGGAAATGAAATA
1 TGATGTATGTGCAAATGAAATA
*
67787348 TGAT-TATGTGCCAATGAAA
1 TGATGTATGTGCAAATGAAA
67787367 CATAAATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (22 bp):
TGATGTATGTGCAAATGAAATA
Found at i:67792402 original size:56 final size:56
Alignment explanation
Indices: 67792298--67792438 Score: 169
Period size: 56 Copynumber: 2.6 Consensus size: 56
67792288 TGCGACATGG
* * * * **
67792298 CCGTGGGCGAACCTGGCAAAA-CAACACGGGCATGCGACACGCCCGTGCCTTGAAA
1 CCGTGGCCGAACCTGTCAAAATTAACACGGGCATGCGACACGCCAGTGCCAAGAAA
* *
67792353 CCGTGGCCAAACCTGTCAAAATTAACACGGGCATGCGACACGCCAGTGCCAAGCAA
1 CCGTGGCCGAACCTGTCAAAATTAACACGGGCATGCGACACGCCAGTGCCAAGAAA
* * *
67792409 CCGTGGTCGAACCTGT-TAGATTAACACGGG
1 CCGTGGCCGAACCTGTCAAAATTAACACGGG
67792439 TGTGGGACTA
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
55 30 0.41
56 43 0.59
ACGTcount: A:0.28, C:0.30, G:0.27, T:0.14
Consensus pattern (56 bp):
CCGTGGCCGAACCTGTCAAAATTAACACGGGCATGCGACACGCCAGTGCCAAGAAA
Found at i:67795089 original size:63 final size:64
Alignment explanation
Indices: 67795009--67795192 Score: 162
Period size: 63 Copynumber: 2.9 Consensus size: 64
67794999 AGACATTATG
* * *
67795009 ATGTAGCTAGGTTGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAG-TACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
67795072 ATGTAGCTAGGTCGCATGCGTGGTTGC-AGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGT-GATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
67795136 TAA
62 TAA
* * * * *
67795139 AT-TGGCTAGGTCACATGGGTGGTTCTGA-GTGTTCACCATGT-GTACAAGAGAGCT
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGCT
67795193 GAACTATATG
Statistics
Matches: 97, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 40 0.41
64 4 0.04
65 5 0.05
66 36 0.37
67 11 0.11
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:67796285 original size:2 final size:2
Alignment explanation
Indices: 67796278--67796314 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
67796268 TCATGACATG
67796278 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
67796315 GACTAGTCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:67802579 original size:29 final size:29
Alignment explanation
Indices: 67802544--67802676 Score: 212
Period size: 29 Copynumber: 4.6 Consensus size: 29
67802534 ATAAACGATC
*** *
67802544 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
67802573 TCGCACACATAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
67802602 TTGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
67802631 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
67802660 TCGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
67802677 ATCTTGTCAC
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 96 1.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATAATTTAAGT
Found at i:67809581 original size:28 final size:28
Alignment explanation
Indices: 67809535--67809609 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 28
67809525 TCAAATATGG
* * *
67809535 CACTCAGTGTACGGAATATTGAGAATGA
1 CACTTAGTGTGCGAAATATTGAGAATGA
* * *
67809563 CATTTAGTGTGCGAGATATTTAGAATGA
1 CACTTAGTGTGCGAAATATTGAGAATGA
67809591 CACTTAGTGTGCGAAATAT
1 CACTTAGTGTGCGAAATAT
67809610 CGAATGATTC
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (28 bp):
CACTTAGTGTGCGAAATATTGAGAATGA
Found at i:67814644 original size:28 final size:28
Alignment explanation
Indices: 67814604--67814668 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
67814594 ATGTACTAGA
*
67814604 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
67814632 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
67814660 ATACCCCTA
1 ATACCCCTA
67814669 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:67814832 original size:27 final size:27
Alignment explanation
Indices: 67814774--67814863 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
67814764 AGGAAGCGTC
67814774 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
67814802 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
67814829 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
67814858 CTGGTG
1 CTGGTG
67814864 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:67814882 original size:55 final size:56
Alignment explanation
Indices: 67814774--67814888 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
67814764 AGGAAGCGTC
* *
67814774 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
67814829 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
67814885 CTGG
1 CTGG
67814889 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:67821481 original size:16 final size:15
Alignment explanation
Indices: 67821455--67821484 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
67821445 GCTAGATCGG
67821455 CAAAAGCCGAAAAGT
1 CAAAAGCCGAAAAGT
67821470 CAAAATGCCGAAAAG
1 CAAAA-GCCGAAAAG
67821485 CCGGTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.20, G:0.20, T:0.07
Consensus pattern (15 bp):
CAAAAGCCGAAAAGT
Found at i:67821777 original size:28 final size:28
Alignment explanation
Indices: 67821737--67821800 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
67821727 TGTACTAGAC
* *
67821737 TACCACTATGTATGCAAAATTACCATTA
1 TACCCCTATGTATGCAAAATGACCATTA
*
67821765 TACCCCTATGTATGCAAAATGACCTTTA
1 TACCCCTATGTATGCAAAATGACCATTA
67821793 TACCCCTA
1 TACCCCTA
67821801 GGATTAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATGACCATTA
Found at i:67821957 original size:27 final size:27
Alignment explanation
Indices: 67821921--67821987 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
67821911 TGCTATGCCA
67821921 CAAAT-TATCTGTTCAGGTGGC-CTTGC
1 CAAATATATCTGTTCAGGTGGCAC-TGC
*
67821947 CAAATATATCTGTTCTGGTGGCACTGC
1 CAAATATATCTGTTCAGGTGGCACTGC
*
67821974 CACAAAATATCTGT
1 CA-AATATATCTGT
67821988 ATCTGGTGAC
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
26 5 0.14
27 20 0.56
28 11 0.31
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.33
Consensus pattern (27 bp):
CAAATATATCTGTTCAGGTGGCACTGC
Found at i:67822006 original size:29 final size:29
Alignment explanation
Indices: 67821916--67822006 Score: 84
Period size: 29 Copynumber: 3.2 Consensus size: 29
67821906 CTGGTTGCTA
* *
67821916 TGCCACAAAT-TATCTGTTCAGGTGGC-C
1 TGCCACAAATATATCTGTTCTGGTGACAC
*
67821943 TTG-C-CAAATATATCTGTTCTGGTGGCAC
1 -TGCCACAAATATATCTGTTCTGGTGACAC
*
67821971 TGCCACAAA-ATATCTGTATCTGGTGACTC
1 TGCCACAAATATATCTGT-TCTGGTGACAC
*
67822000 TGTCACA
1 TGCCACA
67822007 TTTTCTGTAT
Statistics
Matches: 54, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
26 5 0.09
27 18 0.33
28 12 0.22
29 19 0.35
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (29 bp):
TGCCACAAATATATCTGTTCTGGTGACAC
Found at i:67827224 original size:179 final size:178
Alignment explanation
Indices: 67826947--67827296 Score: 513
Period size: 179 Copynumber: 2.0 Consensus size: 178
67826937 TAAAAAACTC
* * * * * *
67826947 CAAATTAAGATCTGTTAATTTTCCTAGAAACTAGACTCACATATATTCTTACATAAAATTTTCAG
1 CAAATTAAGAACCGCTAATTTTCCTAGAAACTAAACTCACATATATTCTGACATAAAATTTTCAA
* **
67827012 AATTTTTGGTTTATCCAATTAGTACAATTTATTCATTAAATTTACCCCTGTTTCACTATCCAACA
66 AATTTTTGGTTTAGCCAATTAGTACAATTTATTCATTAAAGATACCCCTGTTTCACTATCCAACA
*
67827077 GTTCCGACCTCTCTTCACTAAAAAATATTTATCTCATGGTATGGACTT
131 GTTCCGACCTCTCTTCACCAAAAAATATTTATCTCATGGTATGGACTT
* * *
67827125 CAAATTAAGAACCGCTAATTTTTCC-AGAAACTAAACTCATATATATTCTGACCATTAACTTTTC
1 CAAATTAAGAACCGCTAA-TTTTCCTAGAAACTAAACTCACATATATTCTGA-CATAAAATTTTC
* *
67827189 AAAATTTTTGGTTTAGCCAATTAGTACAGTTTATTCATTAAAGATACCCCTGTTTCACTGTCCAA
64 AAAATTTTTGGTTTAGCCAATTAGTACAATTTATTCATTAAAGATACCCCTGTTTCACTATCCAA
* * *
67827254 CAGTTCCGATCTTTCTTCACCAAAAATTATTTATCTCATGGTA
129 CAGTTCCGACCTCTCTTCACCAAAAAATATTTATCTCATGGTA
67827297 CAGATATTGG
Statistics
Matches: 152, Mismatches: 18, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
178 38 0.25
179 114 0.75
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.38
Consensus pattern (178 bp):
CAAATTAAGAACCGCTAATTTTCCTAGAAACTAAACTCACATATATTCTGACATAAAATTTTCAA
AATTTTTGGTTTAGCCAATTAGTACAATTTATTCATTAAAGATACCCCTGTTTCACTATCCAACA
GTTCCGACCTCTCTTCACCAAAAAATATTTATCTCATGGTATGGACTT
Found at i:67827924 original size:50 final size:50
Alignment explanation
Indices: 67827864--67828198 Score: 314
Period size: 50 Copynumber: 6.6 Consensus size: 50
67827854 CTCTGGTATG
* * * *
67827864 CATAGTAGCCTGCACTTAGTATTACACATGTGACCTATCAATCTGCTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCCGGTACA
* * *
67827914 CATAGCAGCCTGCCACTTAGTACTACATATGTGACCTATCAATCCGGTACA
1 CATAGTAGCCTG-CACTTAGTACTACACATGTGACCTAACAATCCGGTACA
* * * * *
67827965 CGTAGTAGCCTGGACTTAGTACTACACACGTGACCTAACCATCCGATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCCGGTACA
* * * * * * * *
67828015 CGTAGTAGCTTGCACTTAGTACTACACAAGTGATCGAACTATCAGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCCGGTACA
* ** **
67828065 CATACTAGCCTGCACTTAGTACTACACATGCAACCTAACAATATGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCCGGTACA
** * * * *
67828115 TGTAGTAGCCTGCACTTAGTATTACACACGTGACCTAA-AACTTTC-TTAAACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA--TCCGGT--ACA
* *
67828167 CATAGTAGCCTACACATAGTACTACACATGTG
1 CATAGTAGCCTGCACTTAGTACTACACATGTG
67828199 TTCTCACAAT
Statistics
Matches: 230, Mismatches: 50, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
49 2 0.01
50 154 0.67
51 45 0.20
52 29 0.13
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCCGGTACA
Found at i:67828126 original size:150 final size:151
Alignment explanation
Indices: 67827866--67828152 Score: 380
Period size: 150 Copynumber: 1.9 Consensus size: 151
67827856 CTGGTATGCA
* * * * *
67827866 TAGTAGCCTGCACTTAGTATTACACATGTGACCTATCAATCTGCTACACATAGCAGCCTGCCACT
1 TAGTAGCCTGCACTTAGTACTACACAAGTGACCGAACAATCAGCTACACATAGCAGCCTGCCACT
* ** * * *
67827931 TAGTACTACATATGTGACCTATCAATCCGGTACACGTAGTAGCCTGGACTTAGTACTACACACGT
66 TAGTACTACACATGCAACCTAACAATACGGTACACGTAGTAGCCTGCACTTAGTACTACACACGT
67827996 GACCTAACCATCCGATACACG
131 GACCTAACCATCCGATACACG
* * * * *
67828017 TAGTAGCTTGCACTTAGTACTACACAAGTGATCGAACTATCAGGTACGCATA-CTAGCCTG-CAC
1 TAGTAGCCTGCACTTAGTACTACACAAGTGACCGAACAATCAGCTACACATAGC-AGCCTGCCAC
* * *
67828080 TTAGTACTACACATGCAACCTAACAATATGGTACATGTAGTAGCCTGCACTTAGTATTACACACG
65 TTAGTACTACACATGCAACCTAACAATACGGTACACGTAGTAGCCTGCACTTAGTACTACACACG
67828145 TGACCTAA
130 TGACCTAA
67828153 AACTTTCTTA
Statistics
Matches: 116, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
150 68 0.59
151 48 0.41
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (151 bp):
TAGTAGCCTGCACTTAGTACTACACAAGTGACCGAACAATCAGCTACACATAGCAGCCTGCCACT
TAGTACTACACATGCAACCTAACAATACGGTACACGTAGTAGCCTGCACTTAGTACTACACACGT
GACCTAACCATCCGATACACG
Found at i:67834083 original size:47 final size:47
Alignment explanation
Indices: 67834029--67834125 Score: 176
Period size: 47 Copynumber: 2.1 Consensus size: 47
67834019 CCTAGCCTCT
67834029 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
* *
67834076 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
67834123 TTT
1 TTT
67834126 TGCACTTCCT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:67834127 original size:24 final size:24
Alignment explanation
Indices: 67834008--67834126 Score: 179
Period size: 24 Copynumber: 5.0 Consensus size: 24
67833998 GCTTTATCAT
*
67834008 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
67834033 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
67834057 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
67834080 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
67834104 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
67834127 GCACTTCCTC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
23 23 0.26
24 53 0.60
25 12 0.14
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:67834200 original size:20 final size:20
Alignment explanation
Indices: 67834172--67834242 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
67834162 GCATTTATGA
*
67834172 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
67834192 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
* *
67834212 ATATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
67834232 ACATATCATGT
1 ACATATCATGT
67834243 TTATCAAGAT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.37
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:67834207 original size:11 final size:11
Alignment explanation
Indices: 67834177--67834231 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
67834167 TATGAACATC
67834177 TCATGTGCATA
1 TCATGTGCATA
*
67834188 TCA--TACATA
1 TCATGTGCATA
67834197 TCATGTGCATA
1 TCATGTGCATA
* *
67834208 TCATAT--ATG
1 TCATGTGCATA
67834217 TCATGTGCATA
1 TCATGTGCATA
67834228 TCAT
1 TCAT
67834232 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:67836628 original size:40 final size:38
Alignment explanation
Indices: 67836579--67836686 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
67836569 ATCACGATTT
*
67836579 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
67836619 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
67836659 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
67836687 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:67836646 original size:80 final size:80
Alignment explanation
Indices: 67836538--67836686 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
67836528 TATGGTAACC
* * * *
67836538 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
67836602 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
67836618 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
67836683 CCGG
66 CCGG
67836687 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:67840214 original size:12 final size:12
Alignment explanation
Indices: 67840197--67840226 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
67840187 AACTTCTGCC
67840197 AAAACCGAGATG
1 AAAACCGAGATG
67840209 AAAACCGAGATG
1 AAAACCGAGATG
*
67840221 TAAACC
1 AAAACC
67840227 TTGGGTCTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.50, C:0.20, G:0.20, T:0.10
Consensus pattern (12 bp):
AAAACCGAGATG
Found at i:67846681 original size:29 final size:29
Alignment explanation
Indices: 67846648--67846713 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
67846638 ATTGGAACTG
*
67846648 AGTGTGCGAGCTTGAAA-TGCATGGCACTA
1 AGTGTGCGAG-TTGAAAGTACATGGCACTA
* *
67846677 AGTGTGCGAGTTTAAAGTATATGGCACTA
1 AGTGTGCGAGTTGAAAGTACATGGCACTA
67846706 AGTGTGCG
1 AGTGTGCG
67846714 CGGCTGATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
28 5 0.15
29 28 0.85
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.27
Consensus pattern (29 bp):
AGTGTGCGAGTTGAAAGTACATGGCACTA
Found at i:67857084 original size:24 final size:24
Alignment explanation
Indices: 67857056--67857128 Score: 128
Period size: 24 Copynumber: 3.0 Consensus size: 24
67857046 CCTGAATTTC
*
67857056 TTAGCCCCTTGCTTTCGAATCTTA
1 TTAGCCCCTTACTTTCGAATCTTA
*
67857080 TTAGCCCCTTATTTTCGAATCTTA
1 TTAGCCCCTTACTTTCGAATCTTA
67857104 TTAGCCCCTTACTTTCGAATCTTA
1 TTAGCCCCTTACTTTCGAATCTTA
67857128 T
1 T
67857129 CAACCGGAGG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.19, C:0.27, G:0.10, T:0.44
Consensus pattern (24 bp):
TTAGCCCCTTACTTTCGAATCTTA
Found at i:67860176 original size:40 final size:40
Alignment explanation
Indices: 67860117--67860258 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
67860107 AAATTGAATG
* * *
67860117 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
67860157 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
67860197 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
67860237 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
67860259 GCATTTGTGC
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 3 0.04
40 82 0.96
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:67860282 original size:40 final size:39
Alignment explanation
Indices: 67860155--67860284 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
67860145 ATGCTGGAAA
* * *
67860155 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CAGC
* *
67860196 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAG-C
*
67860234 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-GC
67860275 TTATATCCGG
1 TTATATCCGG
67860285 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAGC
Found at i:67862365 original size:40 final size:40
Alignment explanation
Indices: 67862283--67862403 Score: 154
Period size: 40 Copynumber: 3.0 Consensus size: 40
67862273 TGTGTATGAA
* *
67862283 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCATT
*
67862322 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCATT
* * * * * *
67862362 TGTGCGGGTTATCATAACCGGGCTATGTCCCGAAGGCGTT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCATT
67862402 TG
1 TG
67862404 AACGAGTAGC
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 25 0.35
40 46 0.65
ACGTcount: A:0.21, C:0.20, G:0.32, T:0.27
Consensus pattern (40 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCATT
Found at i:67864229 original size:28 final size:27
Alignment explanation
Indices: 67864163--67864232 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
67864153 ATAGTGAGTC
*
67864163 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
* *
67864190 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AACT
67864218 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67864233 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:67864305 original size:42 final size:42
Alignment explanation
Indices: 67864241--67864347 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
67864231 CTGTACAAAT
* *
67864241 TTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATATTGTCACCGTGTCCA
67864283 TTTATACCCGCACACTTAGTGCCAATATTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATATTGTCACCGTGTCCA
67864325 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
67864348 GAAATCAACA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.23, C:0.33, G:0.14, T:0.30
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATATTGTCACCGTGTCCA
Found at i:67872227 original size:26 final size:27
Alignment explanation
Indices: 67872196--67872268 Score: 130
Period size: 26 Copynumber: 2.7 Consensus size: 27
67872186 ATAGTGAGTC
*
67872196 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACATAGTGCTATATAATCAGCT
67872223 -GCACACATAGTGCTATATAATCAGCT
1 CGCACACATAGTGCTATATAATCAGCT
67872249 CGCACACATAGTGCTATATA
1 CGCACACATAGTGCTATATA
67872269 CAAATTCGCA
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 25 0.57
27 19 0.43
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACATAGTGCTATATAATCAGCT
Found at i:67872286 original size:26 final size:25
Alignment explanation
Indices: 67872196--67872289 Score: 91
Period size: 26 Copynumber: 3.6 Consensus size: 25
67872186 ATAGTGAGTC
* * *
67872196 CGCACACTTAGTGCTATATAATCAG
1 CGCACACATAGTGCTATATAATAAT
*
67872221 CTGCACACATAGTGCTATATAATCAGCT
1 C-GCACACATAGTGCTATATAAT-A-AT
67872249 CGCACACATAGTGCTATATACA-AATT
1 CGCACACATAGTGCTATATA-ATAA-T
*
67872275 CGCACACTTAGTGCT
1 CGCACACATAGTGCT
67872290 GTACAAATTT
Statistics
Matches: 58, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
25 1 0.02
26 36 0.62
27 19 0.33
28 2 0.03
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.28
Consensus pattern (25 bp):
CGCACACATAGTGCTATATAATAAT
Found at i:67872294 original size:24 final size:25
Alignment explanation
Indices: 67872248--67872298 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
67872238 TATAATCAGC
67872248 TCGCACACATAGTGCTATATACAAAT
1 TCGCACACATAGTGC-ATATACAAAT
* *
67872274 TCGCACACTTAGTGC-TGTACAAAT
1 TCGCACACATAGTGCATATACAAAT
67872298 T
1 T
67872299 TTAAACCCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 9 0.39
26 14 0.61
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (25 bp):
TCGCACACATAGTGCATATACAAAT
Found at i:67877833 original size:71 final size:71
Alignment explanation
Indices: 67877747--67877910 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
67877737 CGATTTGTCT
67877747 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
67877812 CTTTCA
66 CTTTCA
67877818 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
67877883 CTTTCA
66 CTTTCA
67877889 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
67877911 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:67877948 original size:71 final size:70
Alignment explanation
Indices: 67877747--67877944 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
67877737 CGATTTGTCT
* * * *
67877747 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
67877812 CTTTCA
65 CTTTCA
* * * *
67877818 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
67877883 CTTTCA
65 CTTTCA
* *
67877889 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
67877945 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:67880652 original size:12 final size:12
Alignment explanation
Indices: 67880613--67880669 Score: 55
Period size: 12 Copynumber: 4.8 Consensus size: 12
67880603 TTAGGCTGTT
*
67880613 ACACGACCTAGC
1 ACACGGCCTAGC
*
67880625 ACATGGCCTAAG-
1 ACACGGCCT-AGC
*
67880637 ACACCGCCTAGC
1 ACACGGCCTAGC
67880649 ACACGGCCT-GAC
1 ACACGGCCTAG-C
67880661 ACACGGCCT
1 ACACGGCCT
67880670 TGTGATCCCT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
11 3 0.08
12 32 0.86
13 2 0.05
ACGTcount: A:0.28, C:0.40, G:0.21, T:0.11
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:67880664 original size:24 final size:24
Alignment explanation
Indices: 67880619--67880669 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
67880609 TGTTACACGA
* *
67880619 CCTAGCACATGGCCTAAGACACCG
1 CCTAGCACACGGCCTAACACACCG
* *
67880643 CCTAGCACACGGCCTGACACACGG
1 CCTAGCACACGGCCTAACACACCG
67880667 CCT
1 CCT
67880670 TGTGATCCCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.25, C:0.41, G:0.22, T:0.12
Consensus pattern (24 bp):
CCTAGCACACGGCCTAACACACCG
Found at i:67885028 original size:50 final size:50
Alignment explanation
Indices: 67884964--67885153 Score: 221
Period size: 50 Copynumber: 3.9 Consensus size: 50
67884954 CTAACAAAGT
* *
67884964 CGATGCCATGTCCCAAACATGGTCTTACACTAACTCTCGTATATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCATATATCGAGGC
** *
67885014 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCG-GTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCATATATCGAG-GC
* * * *
67885064 CGATGCCATGTTCCAGACATGGTCTTACACTGA----CACATATC-AAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCATATATCGAGGC
* * *
67885109 TGATCCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCATATATC
67885154 CGTAGCATCA
Statistics
Matches: 118, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
45 30 0.25
46 6 0.05
49 8 0.07
50 74 0.63
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (50 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCATATATCGAGGC
Found at i:67885139 original size:95 final size:98
Alignment explanation
Indices: 67884964--67885153 Score: 260
Period size: 95 Copynumber: 1.9 Consensus size: 98
67884954 CTAACAAAGT
* * *
67884964 CGATGCCATGTCCCAAACATGGTCTTACACTAACTCTCGTATATCGAGGCCGATGCCATGTCCCA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAAC-CACG-ATATCGAAGCCGATCCCATGTCCCA
* *
67885029 GACATGGTCTTACACTGGCTCTCATCTATCGGTGC
64 GACATGGTCTTACACTAGCTCTCATATATCGGTGC
* * * *
67885064 CGATGCCATGTTCCAGACATGGTCTTACACTGA-CAC-ATATC-AAGCTGATCCCATGTCCCAGA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAACCACGATATCGAAGCCGATCCCATGTCCCAGA
67885126 CATGGTCTTACACTAGCTCTCATATATC
66 CATGGTCTTACACTAGCTCTCATATATC
67885154 CGTAGCATCA
Statistics
Matches: 81, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
95 44 0.54
96 5 0.06
98 2 0.02
100 30 0.37
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (98 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAACCACGATATCGAAGCCGATCCCATGTCCCAGA
CATGGTCTTACACTAGCTCTCATATATCGGTGC
Found at i:67887396 original size:31 final size:31
Alignment explanation
Indices: 67887361--67887424 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
67887351 CCTTTTCATA
67887361 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
67887392 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
67887423 TT
1 TT
67887425 ACTGTAACAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:67887681 original size:26 final size:26
Alignment explanation
Indices: 67887652--67887718 Score: 98
Period size: 26 Copynumber: 2.6 Consensus size: 26
67887642 GTAACTGAGA
**
67887652 CAAAAGCCCTTTTTGATAAACTGGGG
1 CAAAAGCCCTTTTTGATAAACTAAGG
* *
67887678 CAAAAGCCCTTTTCGGTAAACTAAGG
1 CAAAAGCCCTTTTTGATAAACTAAGG
67887704 CAAAAGCCCTTTTTG
1 CAAAAGCCCTTTTTG
67887719 CACTTCCTCC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.27
Consensus pattern (26 bp):
CAAAAGCCCTTTTTGATAAACTAAGG
Found at i:67887787 original size:20 final size:20
Alignment explanation
Indices: 67887764--67887810 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
67887754 TTATGAGTAC
67887764 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
67887784 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
67887804 ATCATGT
1 ATCATGT
67887811 ATATCAGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:67890618 original size:80 final size:80
Alignment explanation
Indices: 67890534--67890682 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
67890524 TATGGTAACC
* * * *
67890534 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
67890598 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
67890614 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
67890679 CCGG
66 CCGG
67890683 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:67890624 original size:40 final size:38
Alignment explanation
Indices: 67890575--67890682 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
67890565 ATCACGATTT
*
67890575 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
67890615 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
67890655 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
67890683 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:67897859 original size:27 final size:27
Alignment explanation
Indices: 67897841--67897909 Score: 102
Period size: 27 Copynumber: 2.5 Consensus size: 27
67897831 ATAGTGAGTC
67897841 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTATATAATCAGCT
**
67897868 CGCACACTTAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AGCT
*
67897896 CGTACACTTAGTGC
1 CGCACACTTAGTGC
67897910 CAATCTTGTC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 23 0.61
28 15 0.39
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.30
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAGCT
Found at i:67898388 original size:2 final size:2
Alignment explanation
Indices: 67898381--67898406 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
67898371 TAATGGCCGA
67898381 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
67898407 GTACAATGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:67905754 original size:28 final size:27
Alignment explanation
Indices: 67905688--67905757 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
67905678 ATAGTGAGTC
*
67905688 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
*
67905715 CGCACACTTAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AACT
67905743 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67905758 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:67906268 original size:2 final size:2
Alignment explanation
Indices: 67906261--67906290 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
67906251 TAATGGCCGA
67906261 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67906291 GTACAATGTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:67908077 original size:27 final size:27
Alignment explanation
Indices: 67908047--67908125 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 27
67908037 ACCCCAGTTT
67908047 GTAAAATGACTATAATACCCGTATAGG
1 GTAAAATGACTATAATACCCGTATAGG
** *
67908074 GTAAAATGACCGTAGTACTCC-TATAGG
1 GTAAAATGACTATAATAC-CCGTATAGG
67908101 GTAAAATGA-TCATAATACCCTGTAT
1 GTAAAATGACT-ATAATACCC-GTAT
67908126 TGTAAAATGA
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
26 2 0.05
27 35 0.83
28 5 0.12
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (27 bp):
GTAAAATGACTATAATACCCGTATAGG
Found at i:67908316 original size:27 final size:26
Alignment explanation
Indices: 67908273--67908324 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
67908263 TGGAGGAAGT
*
67908273 ACTGTACTGGTGACTATGTCACAATC
1 ACTGTACTGGTGACTATGCCACAATC
*
67908299 ACTGTTACTGGTGGCTATGCCACAAT
1 ACTG-TACTGGTGACTATGCCACAAT
67908325 TACAGATACT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (26 bp):
ACTGTACTGGTGACTATGCCACAATC
Found at i:67908334 original size:27 final size:27
Alignment explanation
Indices: 67908277--67908354 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 27
67908267 GGAAGTACTG
* * * * *
67908277 TACTGGTGACTATGTCACAATCACTGT
1 TACTGGTGGCTATGCCACAATTACAGA
67908304 TACTGGTGGCTATGCCACAATTACAGA
1 TACTGGTGGCTATGCCACAATTACAGA
** * *
67908331 TACTAATGGCTTTGCCACATTTAC
1 TACTGGTGGCTATGCCACAATTAC
67908355 TGTTTCTGGC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACAATTACAGA
Found at i:67908595 original size:33 final size:33
Alignment explanation
Indices: 67908547--67908645 Score: 101
Period size: 33 Copynumber: 3.0 Consensus size: 33
67908537 TTAGGCCTAC
* *
67908547 ACTGCTACTGTATAGGGCTAGGGCCCAAACTAT
1 ACTGATACTGAATAGGGCTAGGGCCCAAACTAT
* * *
67908580 ACTGATACTGAATAGGGCTTA-CGCCCAGACTGT
1 ACTGATACTGAATAGGGC-TAGGGCCCAAACTAT
* * * *
67908613 ACTGATATTGAATAAGTCTTGGGCCCAAACTAT
1 ACTGATACTGAATAGGGCTAGGGCCCAAACTAT
67908646 GTTATTCACT
Statistics
Matches: 52, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
32 1 0.02
33 49 0.94
34 2 0.04
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (33 bp):
ACTGATACTGAATAGGGCTAGGGCCCAAACTAT
Found at i:67915839 original size:27 final size:27
Alignment explanation
Indices: 67915809--67916115 Score: 434
Period size: 27 Copynumber: 11.4 Consensus size: 27
67915799 TACCCCATGA
*
67915809 GGGTATCTCGGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* * *
67915836 GGGTATTTCAGTATTTCTACCCTACAA
1 GGGTATTTCGGTAATTCTACCCTACAG
67915863 GGGTATTTCGGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
*
67915890 GGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* * *
67915917 GGGTATTTCGATAATTCTACCTTACAA
1 GGGTATTTCGGTAATTCTACCCTACAG
*
67915944 GGGTATTTTGGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
67915971 GGGTATTTCGGTAATTCTACCTTACAA
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
67915998 GGGTATTTCAGTAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
67916025 GGGTATTTCGGTAATTCTACCTTATAG
1 GGGTATTTCGGTAATTCTACCCTACAG
** *
67916052 GGGTATTTTAGTAATTCTACCCTACAA
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
67916079 GGGTATTTCGGTAATTCTACCTTATAG
1 GGGTATTTCGGTAATTCTACCCTACAG
67916106 GGGTATTTCG
1 GGGTATTTCG
67916116 AAAATTTTAA
Statistics
Matches: 245, Mismatches: 35, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 245 1.00
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
GGGTATTTCGGTAATTCTACCCTACAG
Found at i:67916148 original size:27 final size:27
Alignment explanation
Indices: 67915943--67916256 Score: 166
Period size: 27 Copynumber: 11.7 Consensus size: 27
67915933 CTACCTTACA
* *
67915943 AGGGTATTTTGGTAATTCTACCCT-ACAG
1 AGGGTATTTTGGTAATTTTA--CTAATAG
* * * *
67915971 -GGGTATTTCGGTAATTCTACCTTACA-
1 AGGGTATTTTGGTAATTTTA-CTAATAG
** *
67915997 AGGGTATTTCAGTAATTCTACCCT-ATAG
1 AGGGTATTTTGGTAATTTTA--CTAATAG
* * *
67916025 -GGGTATTTCGGTAATTCTACCTTATAG
1 AGGGTATTTTGGTAATTTTA-CTAATAG
* * *
67916052 -GGGTATTTTAGTAATTCTACCCT-ACA-
1 AGGGTATTTTGGTAATTTTA--CTAATAG
* * *
67916078 AGGGTATTTCGGTAATTCTACCTTATAG
1 AGGGTATTTTGGTAATTTTA-CTAATAG
* ** **
67916106 -GGGTATTTCGAAAATTTTAAAAATTAG
1 AGGGTATTTTGGTAATTTTACTAA-TAG
* *
67916133 -GGGTATTTTGGTAA-TTTACAAACCAG
1 AGGGTATTTTGGTAATTTTACTAA-TAG
* *
67916159 A-GGTATTTTGGTAATTTTTCTAATCG
1 AGGGTATTTTGGTAATTTTACTAATAG
* *
67916185 AAGGTATTTTGGTAATTTTTCTAATAG
1 AGGGTATTTTGGTAATTTTACTAATAG
* *
67916212 AGGGTATTTTGGTAATTTTGCTAATCG
1 AGGGTATTTTGGTAATTTTACTAATAG
67916239 AGGGTATTTTGGTAATTT
1 AGGGTATTTTGGTAATTT
67916257 GGTAACTAAA
Statistics
Matches: 243, Mismatches: 30, Indels: 27
0.81 0.10 0.09
Matches are distributed among these distances:
26 34 0.14
27 203 0.84
28 6 0.02
ACGTcount: A:0.27, C:0.12, G:0.21, T:0.41
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACTAATAG
Found at i:67916163 original size:26 final size:27
Alignment explanation
Indices: 67916133--67916256 Score: 171
Period size: 27 Copynumber: 4.6 Consensus size: 27
67916123 TAAAAATTAG
* * *
67916133 GGGTATTTTGGTAA-TTTAC-AAACCA
1 GGGTATTTTGGTAATTTTTCTAATCGA
67916158 GAGGTATTTTGGTAATTTTTCTAATCGA
1 G-GGTATTTTGGTAATTTTTCTAATCGA
* *
67916186 AGGTATTTTGGTAATTTTTCTAATAGA
1 GGGTATTTTGGTAATTTTTCTAATCGA
*
67916213 GGGTATTTTGGTAATTTTGCTAATCGA
1 GGGTATTTTGGTAATTTTTCTAATCGA
67916240 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
67916257 GGTAACTAAA
Statistics
Matches: 88, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
25 1 0.01
26 13 0.15
27 70 0.80
28 4 0.05
ACGTcount: A:0.26, C:0.06, G:0.23, T:0.45
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTTCTAATCGA
Found at i:67922616 original size:39 final size:40
Alignment explanation
Indices: 67922444--67922620 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
67922434 CCAAGGCCAA
* * * * * *
67922444 CGGGACTTA-CCCGGATATCACGATTTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
* * *
67922483 CGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-TGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCAC-AATTGCCTT
*
67922523 CGGGTCTTAGCCCGGATATAGCTACTAGCACAATTGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
* * * * *
67922563 CGGGTCTTAACCCGGATATAATTTC-AGCATAATTGTCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
*
67922602 CGGGGCTTAGCCCGGATAT
1 CGGGTCTTAGCCCGGATAT
67922621 CATTCAATTT
Statistics
Matches: 118, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 39 0.33
40 77 0.65
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
Found at i:67930433 original size:37 final size:37
Alignment explanation
Indices: 67930385--67930496 Score: 136
Period size: 37 Copynumber: 2.9 Consensus size: 37
67930375 ATATCACGAT
67930385 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATAA-AAC
1 TTGCAC-AATGCCTTCGGGTCTTAGCCCGGATAACAAC
*
67930422 TTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCAC
1 TTGCAC-AATGCCTTCGGGTCTTAGCCCGGATA-A-CAAC
* *
67930462 TAGCACAATTGCCTTCGGGTCTTAACCCGGTATAA
1 TTGCACAA-TGCCTTCGGGTCTTAGCCCGG-ATAA
67930497 TTTCCAGCAT
Statistics
Matches: 66, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
37 32 0.48
38 1 0.02
39 2 0.03
40 28 0.42
41 3 0.05
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (37 bp):
TTGCACAATGCCTTCGGGTCTTAGCCCGGATAACAAC
Found at i:67930491 original size:40 final size:38
Alignment explanation
Indices: 67930355--67930495 Score: 144
Period size: 40 Copynumber: 3.7 Consensus size: 38
67930345 CCGCACCAAG
* * * *
67930355 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAACCCGGATAT-ACAACTTGCAC-AAT
*
67930395 GCCTTCGGGTCTTAGCCCGGATA-A-AACTTGCACGAAT
1 GCCTTCGGGTCTTAACCCGGATATACAACTTGCAC-AAT
* * *
67930432 GCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACAATT
1 GCCTTCGGGTCTTAACCCGGATATA-CAACTTGCACAA-T
67930472 GCCTTCGGGTCTTAACCCGG-TATA
1 GCCTTCGGGTCTTAACCCGGATATA
67930496 ATTTCCAGCA
Statistics
Matches: 88, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
37 33 0.38
38 2 0.02
39 6 0.07
40 47 0.53
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (38 bp):
GCCTTCGGGTCTTAACCCGGATATACAACTTGCACAAT
Found at i:67937994 original size:27 final size:26
Alignment explanation
Indices: 67937947--67937997 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
67937937 CAAGGCTGCC
*
67937947 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
67937973 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
67937998 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:67944048 original size:28 final size:28
Alignment explanation
Indices: 67944016--67944085 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
67944006 AATGAGATTG
67944016 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
67944044 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
67944072 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
67944086 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:67951842 original size:28 final size:28
Alignment explanation
Indices: 67951810--67951879 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
67951800 AATGAGATTG
67951810 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
67951838 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
67951866 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
67951880 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:67955824 original size:27 final size:27
Alignment explanation
Indices: 67955749--67955824 Score: 64
Period size: 27 Copynumber: 2.8 Consensus size: 27
67955739 TTTACGCACG
* * * *
67955749 AGGGGCAAAATAGTCATTTTACCCTCT
1 AGGGGTAAATTAGTAATTCTACCCTCT
* *
67955776 AGGGGTAAATTAGTAGTCCTACCCTAC-
1 AGGGGTAAATTAGTAATTCTACCCT-CT
**
67955803 AGGGGTATTTTAGTAATTCTAC
1 AGGGGTAAATTAGTAATTCTAC
67955825 AACTTATCCC
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
27 37 0.97
28 1 0.03
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (27 bp):
AGGGGTAAATTAGTAATTCTACCCTCT
Found at i:67957049 original size:46 final size:46
Alignment explanation
Indices: 67956981--67957071 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
67956971 TATATATACA
* * *
67956981 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
* ** *
67957027 CATCTCATACACATTTTGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATAT
67957072 ATACAGTTCC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.27, C:0.31, G:0.07, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:67957114 original size:22 final size:22
Alignment explanation
Indices: 67957088--67957209 Score: 67
Period size: 22 Copynumber: 5.3 Consensus size: 22
67957078 TTCCACGTTC
67957088 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
67957110 ATCACATATATG-CATGT-T-CACATTT
1 ATCACAT-T-GGCCAT-TCTGC-C--TT
*
67957135 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
67957157 ATCACATATGTG-CATGT-T-CACATT
1 ATCACAT-TG-GCCAT-TCTGC-C-TT
*
67957181 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTGCCTT
67957204 ATCACA
1 ATCACA
67957210 CATATGCATG
Statistics
Matches: 77, Mismatches: 5, Indels: 36
0.65 0.04 0.31
Matches are distributed among these distances:
22 24 0.31
23 18 0.23
24 17 0.22
25 18 0.23
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:67957116 original size:47 final size:47
Alignment explanation
Indices: 67957051--67957330 Score: 445
Period size: 47 Copynumber: 6.0 Consensus size: 47
67957041 TTTGCATTAA
* ** * *
67957051 CCATTCGGCTTTCCCACATATATACA-GTTCCACGTTCATCACATTGG
1 CCATTCGGCCTTATCACATATATGCATGTT-CACATTCATCACATTGG
* *
67957098 CCATTCTGCCTTATCACATATATGCATGTTCACATTTATCACATTGG
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
*
67957145 CCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
*
67957192 CCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
67957239 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
* *
67957286 CCATTCGGCCTTATCACATATGTACATGTTCACATTCATCACATT
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATT
67957331 AAATCCTAAA
Statistics
Matches: 217, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 214 0.99
48 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (47 bp):
CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
Found at i:67960104 original size:40 final size:40
Alignment explanation
Indices: 67959985--67960192 Score: 235
Period size: 40 Copynumber: 5.2 Consensus size: 40
67959975 TCTTCAGAAT
* ** * * *
67959985 TTAG-CCGGATATAACCACAAGCACAATTACCTTCTGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
67960024 TTTAACCCGTG-TATAGCAACTCGTACAAATGCCTTC-GGTC
1 -TTAGCCCG-GATATAACAACTCGCACAAATGCCTTCGGGTC
*
67960064 TTAGCCCGAATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
67960104 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
67960144 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
67960184 TTAGCCCGG
1 TTAGCCCGG
67960193 GTATCATTCA
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 30 0.21
40 92 0.63
41 22 0.15
42 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:67964156 original size:30 final size:30
Alignment explanation
Indices: 67964120--67964220 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
67964110 GACAAGATTG
* * *
67964120 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
67964150 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
67964178 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
67964207 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
67964221 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:67964232 original size:29 final size:28
Alignment explanation
Indices: 67964149--67964224 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
67964139 AAAATTGTAC
* *
67964149 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
67964177 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
67964206 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
67964225 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Done.