Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 240 of 444
Found at i:67971341 original size:40 final size:40
Alignment explanation
Indices: 67971233--67971439 Score: 294
Period size: 40 Copynumber: 5.2 Consensus size: 40
67971223 TCTTCGGAAT
* ** *
67971233 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* *
67971272 TTAACCCGG-TATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
67971311 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
67971351 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
67971391 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
67971431 TTAGCCCGG
1 TTAGCCCGG
67971440 GTATCATTCA
Statistics
Matches: 152, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 36 0.24
40 115 0.76
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:67972867 original size:22 final size:22
Alignment explanation
Indices: 67972840--67972883 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
67972830 AGAACCAAGG
67972840 ATACAAGCTTTGTTTTCATTAC
1 ATACAAGCTTTGTTTTCATTAC
67972862 ATACAAGCTTTGTTTTCATTAC
1 ATACAAGCTTTGTTTTCATTAC
67972884 CCTTTTTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.09, T:0.45
Consensus pattern (22 bp):
ATACAAGCTTTGTTTTCATTAC
Found at i:67974321 original size:13 final size:13
Alignment explanation
Indices: 67974303--67974328 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67974293 ATTTTTATTT
67974303 TTAACATAAAATA
1 TTAACATAAAATA
67974316 TTAACATAAAATA
1 TTAACATAAAATA
67974329 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:67991439 original size:28 final size:28
Alignment explanation
Indices: 67991394--67991454 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 28
67991384 CAATATTAGT
* * * * *
67991394 ACAGTTTGGGCCTTAGCCCTATACAGTA
1 ACAGTGTGGACCTAAGCCCAATAAAGTA
67991422 ACAGTGTGGACCTAAGCCCAATAAAGTA
1 ACAGTGTGGACCTAAGCCCAATAAAGTA
*
67991450 TCAGT
1 ACAGT
67991455 ACAGTGTAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (28 bp):
ACAGTGTGGACCTAAGCCCAATAAAGTA
Found at i:67991617 original size:27 final size:27
Alignment explanation
Indices: 67991584--67991670 Score: 95
Period size: 27 Copynumber: 3.3 Consensus size: 27
67991574 AGTTGCCAAA
*
67991584 AACAGTAAATGTGGCAAAGTCACCAGT
1 AACAGTAAATGTGGCATAGTCACCAGT
** * *
67991611 ATTAGTAATTGTGGCATAGCCACCAGT
1 AACAGTAAATGTGGCATAGTCACCAGT
* * *
67991638 AACACTGAATGTGACATAGTCACCAGT
1 AACAGTAAATGTGGCATAGTCACCAGT
67991665 -ACAGTA
1 AACAGTA
67991671 CTTCCACCAA
Statistics
Matches: 46, Mismatches: 14, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
26 4 0.09
27 42 0.91
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.23
Consensus pattern (27 bp):
AACAGTAAATGTGGCATAGTCACCAGT
Found at i:67991836 original size:27 final size:27
Alignment explanation
Indices: 67991806--67991868 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
67991796 GGGCATAATC
*
67991806 GTCATTTTACCATATAAAGGTATTACG
1 GTCATTTTACCATACAAAGGTATTACG
* **
67991833 GTCATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCATACAAAGGTATTACG
67991860 GTCATTTTA
1 GTCATTTTA
67991869 TGTATTTTGG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCATACAAAGGTATTACG
Found at i:67991981 original size:27 final size:27
Alignment explanation
Indices: 67991943--67991999 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
67991933 CAGATAACCT
* *
67991943 AAATGATCATAACGGTGTGAATGGGCC
1 AAATGATCATAACAGTGTGAATAGGCC
67991970 AAATGATCATAACAGTGTGAATAGGCC
1 AAATGATCATAACAGTGTGAATAGGCC
67991997 AAA
1 AAA
67992000 GGCCCATTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.21
Consensus pattern (27 bp):
AAATGATCATAACAGTGTGAATAGGCC
Found at i:67994504 original size:29 final size:29
Alignment explanation
Indices: 67994443--67994519 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 29
67994433 CACATACCTG
* *
67994443 TATATGGTCTACTAGGCCC-AATCACATT
1 TATATGGACCACTAGGCCCAAATCACATT
*
67994471 TATATGGCCCACTAGGCCCAAATCACATT
1 TATATGGACCACTAGGCCCAAATCACATT
67994500 TATATGGACCATCT-GGCCCA
1 TATATGGACCA-CTAGGCCCA
67994520 TTAAGTCTGT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
28 17 0.39
29 25 0.57
30 2 0.05
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (29 bp):
TATATGGACCACTAGGCCCAAATCACATT
Found at i:68001897 original size:40 final size:40
Alignment explanation
Indices: 68001840--68002008 Score: 191
Period size: 40 Copynumber: 4.2 Consensus size: 40
68001830 TGAATGATAC
* *
68001840 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATAT
* *
68001880 CTGGGCTAAGACCCGAAGGCATTCGTG-TGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCT-AGTTGTTATAT
* * *
68001920 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* * * *
68001960 CCGGGTTAAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCT-AAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
68002001 CC-GGCTAA
1 CCGGGCTAA
68002009 ATTCCGAAGA
Statistics
Matches: 108, Mismatches: 17, Indels: 9
0.81 0.13 0.07
Matches are distributed among these distances:
39 3 0.03
40 74 0.69
41 31 0.29
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
Found at i:68004650 original size:20 final size:18
Alignment explanation
Indices: 68004616--68004652 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
68004606 GCAACTCATA
68004616 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
68004634 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
68004653 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:68011418 original size:13 final size:13
Alignment explanation
Indices: 68011400--68011428 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
68011390 GGTTGTTTAT
68011400 TAAACTAATTAAC
1 TAAACTAATTAAC
68011413 TAAACTAATTAAC
1 TAAACTAATTAAC
68011426 TAA
1 TAA
68011429 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:68012822 original size:7 final size:6
Alignment explanation
Indices: 68012799--68012832 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
68012789 TTTTTATACG
68012799 TTTTTA -TTTTA TTTTTA TTTTTTA TTTTTA TTTT
1 TTTTTA TTTTTA TTTTTA -TTTTTA TTTTTA TTTT
68012833 CTTAAGTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 5 0.19
6 15 0.58
7 6 0.23
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:68012823 original size:13 final size:13
Alignment explanation
Indices: 68012805--68012832 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
68012795 TACGTTTTTA
68012805 TTTTATTTTTATT
1 TTTTATTTTTATT
68012818 TTTTATTTTTATT
1 TTTTATTTTTATT
68012831 TT
1 TT
68012833 CTTAAGTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTTATTTTTATT
Found at i:68014797 original size:11 final size:12
Alignment explanation
Indices: 68014779--68014809 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
68014769 GCCAATTAAA
68014779 ACCAAAAAATTT
1 ACCAAAAAATTT
68014791 ACCAAAAAATTT
1 ACCAAAAAATTT
68014803 ACCAAAA
1 ACCAAAA
68014810 TAAATTCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.61, C:0.19, G:0.00, T:0.19
Consensus pattern (12 bp):
ACCAAAAAATTT
Found at i:68016868 original size:80 final size:80
Alignment explanation
Indices: 68016784--68016932 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
68016774 TATGGTAACC
* * * *
68016784 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
68016848 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
68016864 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
68016929 CCGG
66 CCGG
68016933 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:68016874 original size:40 final size:38
Alignment explanation
Indices: 68016825--68016932 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
68016815 ATCACGATTT
*
68016825 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
68016865 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
68016905 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
68016933 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:68024985 original size:80 final size:80
Alignment explanation
Indices: 68024901--68025049 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
68024891 TATGGTAACC
* * * *
68024901 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
68024965 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
68024981 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
68025046 CCGG
66 CCGG
68025050 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:68024991 original size:40 final size:38
Alignment explanation
Indices: 68024942--68025049 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
68024932 ATCACGATTT
*
68024942 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
68024982 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
68025022 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
68025050 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:68028819 original size:43 final size:43
Alignment explanation
Indices: 68028694--68028852 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 43
68028684 TGTGTTATCA
** *
68028694 TGTAAGACCACATCTGGGACA-TCGGCATAGAT-TTGTGATTTACG
1 TGTAAGACCATGTCTGGGACAGT-GGCATTGATATT-TGATTT-CG
* * * * *
68028738 TGTAAGACCATGTCTGGAACATTGGCATCG-TATATGATTTTG
1 TGTAAGACCATGTCTGGGACAGTGGCATTGATATTTGATTTCG
* * *
68028780 TGTAAGACCCTGTCTGGGACAGTGGCATTGATATTTGATTACA
1 TGTAAGACCATGTCTGGGACAGTGGCATTGATATTTGATTTCG
*
68028823 TGTAAGACCAGGTCTGGGAC-GTTGGCATTG
1 TGTAAGACCATGTCTGGGACAG-TGGCATTG
68028853 TACGAGCTTA
Statistics
Matches: 95, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
42 28 0.29
43 41 0.43
44 25 0.26
45 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGTGGCATTGATATTTGATTTCG
Found at i:68031072 original size:29 final size:29
Alignment explanation
Indices: 68031029--68031167 Score: 192
Period size: 29 Copynumber: 4.9 Consensus size: 29
68031019 CATGAATTTG
* *
68031029 AATGTGA-CTGGGCCTAACGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
68031057 AATGTGATTTGGGCCTAATGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
* *
68031086 CAGGTGATTTGGGCCTAATGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
* *
68031115 CAGGTGATTTGGGCCTAATGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
* *
68031144 AATATGA-TTGGGCTTAATGGGCCA
1 AATGTGATTTGGGCCTAATGGGCCA
68031168 GATACAGGTA
Statistics
Matches: 102, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
28 23 0.23
29 79 0.77
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATATA
Found at i:68032076 original size:15 final size:15
Alignment explanation
Indices: 68032044--68032082 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
68032034 GGCTTCCTTC
*
68032044 TTATTATTATTTGGA
1 TTATTATTATTTGCA
*
68032059 TTATTATTATTTTCA
1 TTATTATTATTTGCA
*
68032074 TTATAATTA
1 TTATTATTA
68032083 CTAGAAGTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.62
Consensus pattern (15 bp):
TTATTATTATTTGCA
Found at i:68032231 original size:21 final size:21
Alignment explanation
Indices: 68032207--68032273 Score: 84
Period size: 21 Copynumber: 3.2 Consensus size: 21
68032197 GTAGTTTGTT
68032207 TTTTTTGTTAATTAAGGTTTC
1 TTTTTTGTTAATTAAGGTTTC
* *
68032228 TTTTATT-TTAA-GAAGGGTTTT
1 TTTT-TTGTTAATTAA-GGTTTC
68032249 TTTTTTGTTAATTAAGGTTTC
1 TTTTTTGTTAATTAAGGTTTC
68032270 TTTT
1 TTTT
68032274 AAATGAAAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
20 4 0.11
21 30 0.79
22 4 0.11
ACGTcount: A:0.19, C:0.03, G:0.15, T:0.63
Consensus pattern (21 bp):
TTTTTTGTTAATTAAGGTTTC
Found at i:68035616 original size:29 final size:28
Alignment explanation
Indices: 68035561--68035664 Score: 138
Period size: 29 Copynumber: 3.6 Consensus size: 28
68035551 GTGAGCATGA
* *
68035561 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
68035589 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
*
68035618 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGA-TTGGGCCTAATGGGCC
*
68035647 ATATGAATATGATTGGGC
1 ATATGAATGTGATTGGGC
68035665 TTAACGGACC
Statistics
Matches: 68, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
28 19 0.28
29 48 0.71
30 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:68035646 original size:58 final size:57
Alignment explanation
Indices: 68035574--68035684 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 57
68035564 TGAATGTGAC
* * * *
68035574 TGGGCCTAACGGGCCATATGAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATGAATATGA-TTGGGCCTAACGGACCAAATACAGGTGATT
* *
68035632 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTAACGGACCAAATACAGGT
1 TGGGCCTAACGGGCCATATGAATATGATTGGGCCTAACGGACCAAATACAGGT
68035685 ATGTGAATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 22 0.47
58 25 0.53
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATGAATATGATTGGGCCTAACGGACCAAATACAGGTGATT
Found at i:68036744 original size:17 final size:18
Alignment explanation
Indices: 68036711--68036745 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
68036701 TTTTAAGAAG
68036711 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
68036729 GGTTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
68036746 TTCAATATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:68040034 original size:46 final size:45
Alignment explanation
Indices: 68039981--68040156 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
68039971 TATTTGGGCA
68039981 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
*** * * *
68040026 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-GC
* * * *
68040073 ATTCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
*
68040119 TCC-ATAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGA-A-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68040157 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
44 1 0.01
45 2 0.02
46 68 0.64
47 35 0.33
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
Found at i:68040136 original size:93 final size:93
Alignment explanation
Indices: 68039977--68040148 Score: 267
Period size: 93 Copynumber: 1.8 Consensus size: 93
68039967 GGGATATTTG
*
68039977 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
68040042 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
68040070 GGCATTCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAC-TCC-ATAGCTCGTTG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGA-A-CTCGTTG
*
68040133 AGTTGAGTCTGAGTTC
64 AGTTGAGTCCGAGTTC
68040149 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
91 1 0.01
92 4 0.06
93 67 0.93
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:68041502 original size:48 final size:46
Alignment explanation
Indices: 68041441--68041620 Score: 155
Period size: 48 Copynumber: 3.8 Consensus size: 46
68041431 ACATGATATA
* * *
68041441 AGAGCCA-TGTAAGACCATGTTTGGAACATGGCATCAGCGATGTTCTG
1 AGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGC-ATG-ACTG
* * * *
68041488 AGAGCCAGTGTAAGACCATGTCTGGGACATAGCATTGGCATTGAGATG
1 AGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCA-TGA-CTG
* * * * * *
68041536 AGAGCTAGTTTAAGACCATGTCTGGGATATGGCAACGGCCTCGACATG
1 AGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCAT-GAC-TG
* * *
68041584 TGAGCCAGTGTAAGACCATGTTTAGAACATGGCATCG
1 AGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCG
68041621 ACAATTTACC
Statistics
Matches: 105, Mismatches: 23, Indels: 9
0.77 0.17 0.07
Matches are distributed among these distances:
47 9 0.09
48 96 0.91
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
AGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATGACTG
Found at i:68047426 original size:43 final size:42
Alignment explanation
Indices: 68047287--68047445 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 42
68047277 TATGTGTTAT
* * *
68047287 CATGTAAGACCACGTTTGGGAC-GTTGGCATCGATTTGAGATTTA
1 CATGTAAGACCATGTCTGGGACAG-TGGCATCGATTT-TGA-TTA
* * * *
68047331 CATGTAAGACAATGTCTGGGACATTGGCATC-ATATATGATTT
1 CATGTAAGACCATGTCTGGGACAGTGGCATCGAT-TTTGATTA
* * *
68047373 CGTGTAAGACCCTGTTTGGGACAGTGGCATCGATGTTTGATTA
1 CATGTAAGACCATGTCTGGGACAGTGGCATCGAT-TTTGATTA
* * *
68047416 CCTGTAAGACCATGTCTAGGACATTGGCAT
1 CATGTAAGACCATGTCTGGGACAGTGGCAT
68047446 TGTACGAGCT
Statistics
Matches: 92, Mismatches: 20, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
42 28 0.30
43 37 0.40
44 27 0.29
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (42 bp):
CATGTAAGACCATGTCTGGGACAGTGGCATCGATTTTGATTA
Found at i:68051762 original size:39 final size:39
Alignment explanation
Indices: 68051655--68051845 Score: 267
Period size: 39 Copynumber: 4.9 Consensus size: 39
68051645 CGTTCAAACG
* * * * * *
68051655 CTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATGC
1 CTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTGC
*
68051695 CTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGC
1 CTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTGC
*
68051735 CTTCGGGCTTAGCCCGGATATCACAACTTGCACAATTGC
1 CTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGC
*
68051774 CTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTTC
1 CTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGC
*
68051813 CTTC-GGCTTAGCCCGGATATCACAATTCGCACA
1 CTTCGGGCTTAGCCCGGATATCACAACTCGCACA
68051846 TTCATACACA
Statistics
Matches: 139, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
38 28 0.20
39 71 0.51
40 40 0.29
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (39 bp):
CTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGC
Found at i:68059650 original size:39 final size:39
Alignment explanation
Indices: 68059576--68059768 Score: 269
Period size: 39 Copynumber: 4.9 Consensus size: 39
68059566 TCGTTCAAAC
* * * * * *
68059576 GCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAAT
1 GCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATT
*
68059616 GCCTTCGGGCTTAACCCGGATATCACAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
*
68059655 GCCTTCGGGCTTAGCCCGGATATCACAACTCGTACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
*
68059694 GCCTTCGGGCTTAGCCCAGATATCACAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
** *
68059733 GCCTTCGGGCTTAGCCCCAATATCACAATTCGCACA
1 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
68059769 TTTATACACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 130 0.94
40 9 0.06
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
Found at i:68063634 original size:48 final size:47
Alignment explanation
Indices: 68063573--68063890 Score: 262
Period size: 48 Copynumber: 6.6 Consensus size: 47
68063563 ATATGTGTGA
* * *
68063573 CAGTGTAAGACCATGTCTAGGACATGGCGTCAACCACAATATGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATC-GCCACAATATGAGAGC
* * * *** *
68063621 CAGTGTAAGACCATGTTTGGAACATGGCATCGGCGATGTTGTGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATC-GCCACAATATGAGAGC
* * * * *
68063669 CAGTATAAGACCATGTTTGGGACATGGCATCGGCATTGATACATG-G-GC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGCCA--CA-ATATGAGAGC
* * *
68063717 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGATC
1 CAGTGTAAGACCATGTCTGGGACATGGCATC-GCCACAATATGAGAGC
* * ** *
68063765 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGATGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGCCA-CAATATGAGAGC
* * * * *
68063813 TAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCAACATGTGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCA-TCGCCACAATATGAGAGC
* * * *
68063861 CAATGTAATACCATGTTTGGAACATGGCAT
1 CAGTGTAAGACCATGTCTGGGACATGGCAT
68063891 TAGCAATTCA
Statistics
Matches: 212, Mismatches: 50, Indels: 17
0.76 0.18 0.06
Matches are distributed among these distances:
46 3 0.01
47 8 0.04
48 192 0.91
49 7 0.03
50 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGCCACAATATGAGAGC
Found at i:68063742 original size:96 final size:96
Alignment explanation
Indices: 68063573--68063847 Score: 322
Period size: 96 Copynumber: 2.9 Consensus size: 96
68063563 ATATGTGTGA
* * ** ** * *
68063573 CAGTGTAAGACCATGTCTAGGACATGGCGTCAACCA-CAATATGAGAGCCAGTGTAAGACCATGT
1 CAGTATAAGACCATGTCTAGGACATGGCATC-GGCATTGACATGAGAGCTAGTGTAAGACCATGT
* * * ** *
68063637 TTGGAACATGGCATCGGCGATGTTGTGAGAGC
65 CTGGGACATGGCATCGGCCACATTATGAGAGC
* *
68063669 CAGTATAAGACCATGTTTGGGACATGGCATCGGCATTGATACATG-G-GCTAGTGTAAGACCATG
1 CAGTATAAGACCATGTCTAGGACATGGCATCGGCATTG--ACATGAGAGCTAGTGTAAGACCATG
*
68063732 TCTGGGACATGGCATCGGCCACATTATGAGATC
64 TCTGGGACATGGCATCGGCCACATTATGAGAGC
* *
68063765 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGATGAGAGCTAGTGTAAGACCATGTC
1 CAGTATAAGACCATGTCTAGGACATGGCATCGGCATTGACATGAGAGCTAGTGTAAGACCATGTC
*
68063830 TGGGACATGGCATTGGCC
66 TGGGACATGGCATCGGCC
68063848 TCAACATGTG
Statistics
Matches: 152, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
94 4 0.03
95 3 0.02
96 140 0.92
97 1 0.01
98 4 0.03
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (96 bp):
CAGTATAAGACCATGTCTAGGACATGGCATCGGCATTGACATGAGAGCTAGTGTAAGACCATGTC
TGGGACATGGCATCGGCCACATTATGAGAGC
Found at i:68063822 original size:144 final size:144
Alignment explanation
Indices: 68063574--68063842 Score: 391
Period size: 144 Copynumber: 1.9 Consensus size: 144
68063564 TATGTGTGAC
* *
68063574 AGTGTAAGACCATGTCTAGGACATGGCGTCAACCACAATATGAGAGCCAGTGTAAGACCATGTTT
1 AGTGTAAGACCATGTCTAGGACATGGCATCAACCACAATATGAGAGCCAGTGTAAGACCATGTTA
* *
68063639 GGAACATGGCATCGGCGATGTTGTGAGAGCCAGTATAAGACCATGTTTGGGACATGGCATCGGCA
66 GGAACATGGCATCGGCGATGTAGTGAGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCA
68063704 TTGATACATGGGCT
131 TTGATACATGGGCT
* ** * *
68063718 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGATCCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCAACCACAATATGAGAGCCAGTGTAAGACCATGT-T
* *
68063783 AGG-ACATGGCATCGGC-AT-TGAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
65 AGGAACATGGCATCGGCGATGT-AG-TGAGAGCCAGTATAAGACCATGTCTGGGACATGGCAT
68063843 TGGCCTCAAC
Statistics
Matches: 111, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
142 1 0.01
143 3 0.03
144 104 0.94
145 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (144 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCAACCACAATATGAGAGCCAGTGTAAGACCATGTTA
GGAACATGGCATCGGCGATGTAGTGAGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCA
TTGATACATGGGCT
Found at i:68063868 original size:96 final size:95
Alignment explanation
Indices: 68063573--68063890 Score: 313
Period size: 96 Copynumber: 3.3 Consensus size: 95
68063563 ATATGTGTGA
* ** ** * *
68063573 CAGTGTAAGACCATGTCTAGGACATGGCGTCAACCA-CAATATGAGAGCCAGTGTAAGACCATGT
1 CAGTGTAAGACCATGTCTAGGACATGGCATC-GGCATTGACATGAGAGCTAGTGTAAGACCATGT
* * * **
68063637 TTGGAACATGGCATCGG-CGATGTTGTGAGAGC
65 CTGGGACATGGCATCGGCCCATCATGT--GAGC
* * *
68063669 CAGTATAAGACCATGTTTGGGACATGGCATCGGCATTGATACATG-G-GCTAGTGTAAGACCATG
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTG--ACATGAGAGCTAGTGTAAGACCATG
* * *
68063732 TCTGGGACATGGCATCGGCCACATTATGAGATC
64 TCTGGGACATGGCATCGGCC-CATCATGTGAGC
*
68063765 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGATGAGAGCTAGTGTAAGACCATGTC
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGACATGAGAGCTAGTGTAAGACCATGTC
* *
68063830 TGGGACATGGCATTGGCCTCAACATGTGAGC
66 TGGGACATGGCATCGGCC-CATCATGTGAGC
* * *
68063861 CAATGTAATACCATGT-TTGGAACATGGCAT
1 CAGTGTAAGACCATGTCTAGG-ACATGGCAT
68063891 TAGCAATTCA
Statistics
Matches: 184, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
94 4 0.02
95 6 0.03
96 164 0.89
97 2 0.01
98 8 0.04
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (95 bp):
CAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGACATGAGAGCTAGTGTAAGACCATGTC
TGGGACATGGCATCGGCCCATCATGTGAGC
Found at i:68063868 original size:144 final size:144
Alignment explanation
Indices: 68063576--68063890 Score: 379
Period size: 144 Copynumber: 2.2 Consensus size: 144
68063566 TGTGTGACAG
* * *
68063576 TGTAAGACCATGTCTAGGACATGGCGTCAACCACAATATGAGAGCCAGTGTAAGACCATGTTTGG
1 TGTAAGACCATGTCTGGGACATGGCATCAACCACAATATGAGAGCCAGTGTAAGACCATGTTAGG
* * *
68063641 AACATGGCATCGGCGATGTTGTGAGAGCCAGTATAAGACCATGTTTGGGACATGGCATCGGCATT
66 AACATGGCATCGGCGATGTAGTGAGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCACT
* * *
68063706 GATACATGGGCTAG
131 CATACATGGGCCAA
** * *
68063720 TGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGATCCAGTGTAAGACCATGTCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCAACCACAATATGAGAGCCAGTGTAAGACCATGT-TAG
* * *
68063785 G-ACATGGCATCGGC-AT-TGAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGC
65 GAACATGGCATCGGCGATGT-AG-TGAGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGC
68063847 -CTCA-ACATGTGAGCCAA
128 ACTCATACATG-G-GCCAA
* * *
68063864 TGTAATACCATGTTTGGAACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
68063891 TAGCAATTCA
Statistics
Matches: 147, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
142 6 0.04
143 6 0.04
144 132 0.90
145 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (144 bp):
TGTAAGACCATGTCTGGGACATGGCATCAACCACAATATGAGAGCCAGTGTAAGACCATGTTAGG
AACATGGCATCGGCGATGTAGTGAGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCACT
CATACATGGGCCAA
Found at i:68067446 original size:47 final size:49
Alignment explanation
Indices: 68067239--68067603 Score: 217
Period size: 47 Copynumber: 7.7 Consensus size: 49
68067229 GTTAAGTTGT
* * *
68067239 CGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCTTCATCGAGGT
1 CGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCATCGTCGAGGC
* * * * **
68067288 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGT-GTATACGTGC
1 CGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCATCGTCGA-G-GC
* * * * *
68067338 TGTTG-CATGTCCCAGACA-TGTCTTACACTAGC-A-CGA-AG-CTTA-GC
1 CGATGCCATGTCCCAGACATTGTCTTACACTGGCTATC-ATCGTC-GAGGC
** *
68067382 CGATG-CATGTCTTAGACA-CGTCTTACACTGGCTATCATCGTCGAGGC
1 CGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCATCGTCGAGGC
* * *
68067429 CGATG-CATGTCCCAGACA-TGTCTTACACTGGC-ACTCCTC-TCTACGC
1 CGATGCCATGTCCCAGACATTGTCTTACACTGGCTA-TCATCGTCGAGGC
* * * * ** * *
68067475 TGATGCCATGTCCTAGATATGGTCTTACACTGGCTATCATAAT-GTGGT
1 CGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCATCGTCGAGGC
* * * ** * * *
68067523 TGAT-ACATGTCCCAGACA-TGTCTTACACTAGCCCTCAAC-TCAATGC
1 CGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCATCGTCGAGGC
* *
68067569 CGAGGCCATGTCCCAGACATGGTCTTACACTGGCT
1 CGATGCCATGTCCCAGACATTGTCTTACACTGGCT
68067604 CTCACATAAC
Statistics
Matches: 241, Mismatches: 57, Indels: 37
0.72 0.17 0.11
Matches are distributed among these distances:
44 28 0.12
45 3 0.01
46 32 0.13
47 74 0.31
48 48 0.20
49 52 0.22
50 4 0.02
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCATCGTCGAGGC
Found at i:68067532 original size:141 final size:138
Alignment explanation
Indices: 68067245--68067602 Score: 346
Period size: 141 Copynumber: 2.5 Consensus size: 138
68067235 TTGTCGATGC
* * *
68067245 CATGTCCCAGACATTGTCTTACACTGGCTATCTTCATCGAGGTCGATGCCATGTCCCAGACATGG
1 CATGTCCCAGACA-CGTCTTACACTGGCTATCATC-TCGAGGCCGATGCCATGTCCCAGACATGG
* * * * *
68067310 TCTTACACTAGCTCTCGTGTATACGTGCTGTTGCATGTCCCAGACATGTCTTACACTAGCACGAA
64 TCTTACACTGGCACTCCTCTATACG-GCTGATGCATGTCCCAGACATGTCTTACACTAGCACGAA
*
68067375 GCTTAGCCGATG
128 GC-TAGCCGATA
**
68067387 CATGTCTTAGACACGTCTTACACTGGCTATCATCGTCGAGGCCGATG-CATGTCCCAGACAT-GT
1 CATGTCCCAGACACGTCTTACACTGGCTATCATC-TCGAGGCCGATGCCATGTCCCAGACATGGT
* * * *
68067450 CTTACACTGGCACTCCTCTCTAC-GCTGATGCCATGTCCTAGATATGGTCTTACACTGGCTATCA
65 CTTACACTGGCACTCCTCTATACGGCTGATG-CATGTCCCAGACAT-GTCTTACACTAGC-A-C-
* * **
68067514 TAATG-TGGTTGATA
125 GAA-GCTAGCCGATA
* * ** * * * *
68067528 CATGTCCCAGACATGTCTTACACTAGCCCTCAACTCAATGCCGAGGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACACGTCTTACACTGGCTATCATCTCGAGGCCGATGCCATGTCCCAGACATGGTC
68067593 TTACACTGGC
66 TTACACTGGC
68067603 TCTCACATAA
Statistics
Matches: 178, Mismatches: 30, Indels: 16
0.79 0.13 0.07
Matches are distributed among these distances:
137 6 0.03
138 12 0.07
139 32 0.18
140 24 0.13
141 77 0.43
142 26 0.15
143 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (138 bp):
CATGTCCCAGACACGTCTTACACTGGCTATCATCTCGAGGCCGATGCCATGTCCCAGACATGGTC
TTACACTGGCACTCCTCTATACGGCTGATGCATGTCCCAGACATGTCTTACACTAGCACGAAGCT
AGCCGATA
Found at i:68067547 original size:94 final size:93
Alignment explanation
Indices: 68067240--68067603 Score: 324
Period size: 94 Copynumber: 3.8 Consensus size: 93
68067230 TTAAGTTGTC
* * * *
68067240 GATGCCATGTCCCAGACATTGTCTTACACTGGCTA-TCTTCATCGAGGTCGATGCCATGTCCCAG
1 GATG-CATGTCCCAGACA-TGTCTTACACTAGC-ACTCATC-TCTA-GCCGATGCCATGTCCCAG
* * * *
68067304 ACATGGTCTTACACTAGCTCTCGTGTATACGT-GCT
61 ACATGGTCTTACACTGGCTATC--ATA-ATGTGGCT
* ** * ** *
68067339 GTTGCATGTCCCAGACATGTCTTACACTAGCACGAAGCT-TAGCCGATG-CATGTCTTAGACA-C
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTAGCCGATGCCATGTCCCAGACATG
** * *
68067401 GTCTTACACTGGCTATCATCGTCGAGGCC
66 GTCTTACACTGGCTATCATAAT-GTGGCT
* * * * *
68067430 GATGCATGTCCCAGACATGTCTTACACTGGCACTCCTCTCTACGCTGATGCCATGTCCTAGATAT
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTA-GCCGATGCCATGTCCCAGACAT
*
68067495 GGTCTTACACTGGCTATCATAATGTGGTT
65 GGTCTTACACTGGCTATCATAATGTGGCT
* * * * *
68067524 GATACATGTCCCAGACATGTCTTACACTAGCCCTCAACTCAATGCCGAGGCCATGTCCCAGACAT
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTA-GCCGATGCCATGTCCCAGACAT
68067589 GGTCTTACACTGGCT
65 GGTCTTACACTGGCT
68067604 CTCACATAAC
Statistics
Matches: 213, Mismatches: 45, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
90 2 0.01
91 35 0.16
92 17 0.08
93 17 0.08
94 89 0.42
95 21 0.10
96 2 0.01
97 14 0.07
98 13 0.06
99 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (93 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTAGCCGATGCCATGTCCCAGACATG
GTCTTACACTGGCTATCATAATGTGGCT
Found at i:68074956 original size:47 final size:46
Alignment explanation
Indices: 68074711--68075077 Score: 214
Period size: 47 Copynumber: 7.8 Consensus size: 46
68074701 TTAAGTTGTC
* * *
68074711 GATGCCATGTCCCAGACATTGTCTTACACTGGCTA-TCTTCATCGAGGT
1 GATGCCATGTCCCAGACA-TGTCTTACACTGGC-ACTCATC-TCTAGCT
* * * * *
68074759 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATACGTGCT
1 -GATGCCATGTCCCAGACAT-GTCTTACACTGGCACTCATCTCTA---GCT
* ** * *
68074810 GATG-CATGTCCCAGACATGTCTTACACTAGCACGAAGCT-TAGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTAGCT
** * *
68074854 GATG-CATGTCTTAGACACGTCTTACACTGGCTA-TCATCGT-TGAGGT
1 GATGCCATGTCCCAGACATGTCTTACACTGGC-ACTCATC-TCT-AGCT
*
68074900 CGATG-CATGTCCCAGACATGTCTTACACTGGCACTCCTCTCTACGCT
1 -GATGCCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTA-GCT
* * * * * *
68074947 GATGCCATGTCCTAGATATGGTCTTACACTGGCTA-TCATAATGTGGTT
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGC-ACTCAT-CTCTAGCT
* * * * * *
68074995 GAT-ACATGTCCCAGA-ATGTCTTACACTAGCCCTCAACTCAATGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTA-GCT
* *
68075040 GAGGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCACTCA
68075078 CATAACTCAA
Statistics
Matches: 247, Mismatches: 50, Indels: 43
0.73 0.15 0.13
Matches are distributed among these distances:
44 32 0.13
45 21 0.09
46 22 0.09
47 61 0.25
48 55 0.22
49 50 0.20
50 4 0.02
51 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
GATGCCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTAGCT
Found at i:68075003 original size:141 final size:138
Alignment explanation
Indices: 68074716--68075069 Score: 322
Period size: 141 Copynumber: 2.5 Consensus size: 138
68074706 TTGTCGATGC
* *
68074716 CATGTCCCAGACATTGTCTTACACTGGCTATCTTCATCGAGGTCGATGCCATGTCCCAGACATGG
1 CATGTCCCAGA-A-CGTCTTACACTGGCTATCATCATCGAGGTCGATGCCATGTCCCAGACATGG
* * *
68074781 TCTTACACTAGCTCTCGTGTATACGTGCTGATGCATGTCCCAGACATGTCTTACACTAGCACGAA
64 TCTTACACTAGCACTCCTCTATACG-GCTGATGCATGTCCCAGACATGTCTTACACTAGCACGAA
*
68074846 GCTTAGCCGATG
128 GC-TAGCCGATA
** * *
68074858 CATGTCTTAGACACGTCTTACACTGGCTATCATCGTTGAGGTCGATG-CATGTCCCAGACAT-GT
1 CATGTCCCAGA-ACGTCTTACACTGGCTATCATCATCGAGGTCGATGCCATGTCCCAGACATGGT
* * * * *
68074921 CTTACACTGGCACTCCTCTCTAC-GCTGATGCCATGTCCTAGATATGGTCTTACACTGGCTATCA
65 CTTACACTAGCACTCCTCTATACGGCTGATG-CATGTCCCAGACAT-GTCTTACACTAGC-A-C-
* * **
68074985 TAATG-TGGTTGATA
125 GAA-GCTAGCCGATA
* * ** * * * * *
68074999 CATGTCCCAGAATGTCTTACACTAGCCCTCAAC-TCAATGCCGAGGCCATGTCCCAGACATGGTC
1 CATGTCCCAGAACGTCTTACACTGGCTATCATCATCGAGGTCGATGCCATGTCCCAGACATGGTC
68075063 TTACACT
66 TTACACT
68075070 GGCTCTCACA
Statistics
Matches: 173, Mismatches: 31, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
137 7 0.04
138 12 0.07
139 39 0.23
140 46 0.27
141 55 0.32
142 13 0.08
143 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (138 bp):
CATGTCCCAGAACGTCTTACACTGGCTATCATCATCGAGGTCGATGCCATGTCCCAGACATGGTC
TTACACTAGCACTCCTCTATACGGCTGATGCATGTCCCAGACATGTCTTACACTAGCACGAAGCT
AGCCGATA
Found at i:68075049 original size:93 final size:94
Alignment explanation
Indices: 68074711--68075073 Score: 321
Period size: 93 Copynumber: 3.8 Consensus size: 94
68074701 TTAAGTTGTC
* * * *
68074711 GATGCCATGTCCCAGACATTGTCTTACACTGGCTATCTTC-A-TCGAGGTCGATGCCATGTCCCA
1 GATG-CATGTCCCAGACA-TGTCTTACACTAGC-A-C-TCAACTCTA-GCCGATGCCATGTCCTA
* * * ** *
68074774 GACATGGTCTTACACTAGCTCTCGTGTAT-ACGTGCT
60 GACATGGTCTTACACTGGCTATCATCAATGA-G-GTT
* *
68074810 GATGCATGTCCCAGACATGTCTTACACTAGCAC-GAAGCT-TAGCCGATG-CATGTCTTAGACA-
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCAA-CTCTAGCCGATGCCATGTCCTAGACAT
* ** *
68074871 CGTCTTACACTGGCTATCATCGTTGAGGTC
65 GGTCTTACACTGGCTATCATCAATGAGGTT
* ** * *
68074901 GATGCATGTCCCAGACATGTCTTACACTGGCACTCCTCTCTACGCTGATGCCATGTCCTAGATAT
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCAACTCTA-GCCGATGCCATGTCCTAGACAT
*
68074966 GGTCTTACACTGGCTATCAT-AATGTGGTT
65 GGTCTTACACTGGCTATCATCAATGAGGTT
* * * * *
68074995 GATACATGTCCCAGA-ATGTCTTACACTAGCCCTCAACTCAATGCCGAGGCCATGTCCCAGACAT
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCAACTCTA-GCCGATGCCATGTCCTAGACAT
68075059 GGTCTTACACTGGCT
65 GGTCTTACACTGGCT
68075074 CTCACATAAC
Statistics
Matches: 217, Mismatches: 38, Indels: 24
0.78 0.14 0.09
Matches are distributed among these distances:
91 35 0.16
92 20 0.09
93 72 0.33
94 37 0.17
95 21 0.10
96 2 0.01
97 13 0.06
98 13 0.06
99 4 0.02
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.29
Consensus pattern (94 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACTCAACTCTAGCCGATGCCATGTCCTAGACATG
GTCTTACACTGGCTATCATCAATGAGGTT
Found at i:68079019 original size:19 final size:19
Alignment explanation
Indices: 68078995--68079033 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
68078985 CAATAAGTTA
68078995 GTGGGTGTTCATCTTTTAT
1 GTGGGTGTTCATCTTTTAT
68079014 GTGGGTGTTCATCTTTTAT
1 GTGGGTGTTCATCTTTTAT
68079033 G
1 G
68079034 GCCAGTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.10, C:0.10, G:0.28, T:0.51
Consensus pattern (19 bp):
GTGGGTGTTCATCTTTTAT
Found at i:68080580 original size:27 final size:27
Alignment explanation
Indices: 68080527--68080736 Score: 134
Period size: 27 Copynumber: 7.7 Consensus size: 27
68080517 TTTCATCCTA
* * * * *
68080527 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* *
68080554 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
** ** * *
68080581 CAATAGTATTTCTATAATTTTTAGAAAGT
1 CAAGGGTATTTCGGTAA-TTTTATAAA-C
* * *
68080610 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAC
* * * *
68080637 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAC
** * *
68080664 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
*
68080691 C-AGTGGTATTTTGGTAATTTTATAAAC
1 CAAG-GGTATTTCGGTAATTTTATAAAC
* * *
68080718 TAGGGGTATTTTGGTAATT
1 CAAGGGTATTTCGGTAATT
68080737 CTACCCTATA
Statistics
Matches: 143, Mismatches: 36, Indels: 8
0.76 0.19 0.04
Matches are distributed among these distances:
26 2 0.01
27 112 0.78
28 15 0.10
29 14 0.10
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTATAAAC
Found at i:68080655 original size:56 final size:55
Alignment explanation
Indices: 68080547--68080711 Score: 172
Period size: 54 Copynumber: 3.0 Consensus size: 55
68080537 TTGGTAAATC
* * * *
68080547 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATAGTATTTCT-ATAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTT-TGGTAATTTT
* * * *
68080602 TAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAA-TTT
1 TACAAA-TCAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
** * ***
68080657 TACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
68080712 ATAAACTAGG
Statistics
Matches: 90, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
54 37 0.41
55 17 0.19
56 36 0.40
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.41
Consensus pattern (55 bp):
TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
Found at i:68080730 original size:81 final size:81
Alignment explanation
Indices: 68080614--68080769 Score: 210
Period size: 81 Copynumber: 1.9 Consensus size: 81
68080604 GAAAGTCAAG
* * * *
68080614 GGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTA-CAAATTGAGGGTATTTCGG
1 GGTATTTCTGTAATTTTATAAATCAGGGGTATTTTGGTAATTCTACCAAATAG-GGGTATTTCAG
68080678 TAATTTCACAAACCAGT
65 TAATTTCACAAACCAGT
**
68080695 GGTATTT-TGGTAATTTTATAAA-CTAGGGGTATTTTGGTAATTCTACCCTATAGGGGTATTTCA
1 GGTATTTCT-GTAATTTTATAAATC-AGGGGTATTTTGGTAATTCTACCAAATAGGGGTATTTCA
68080758 GTAATTTCACAA
64 GTAATTTCACAA
68080770 TCGAGGGTAA
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
80 2 0.03
81 60 0.91
82 4 0.06
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (81 bp):
GGTATTTCTGTAATTTTATAAATCAGGGGTATTTTGGTAATTCTACCAAATAGGGGTATTTCAGT
AATTTCACAAACCAGT
Found at i:68080755 original size:54 final size:54
Alignment explanation
Indices: 68080612--68080736 Score: 153
Period size: 54 Copynumber: 2.3 Consensus size: 54
68080602 TAGAAAGTCA
* *** * *
68080612 AGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAATAG
* *
68080666 AGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTATAAACTAG
1 AGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAA-TAG
*
68080721 -GGGTATTTTGGTAATT
1 AGGGTATTTCGGTAATT
68080737 CTACCCTATA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 59 0.97
55 2 0.03
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.42
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAATAG
Found at i:68080776 original size:27 final size:26
Alignment explanation
Indices: 68080634--68080776 Score: 101
Period size: 27 Copynumber: 5.3 Consensus size: 26
68080624 TAATTTTGTA
*
68080634 AATCAGGGGTATTTTGGTAATTTTAC
1 AATCAGGGGTATTTTGGTAATTTCAC
* *
68080660 AAAT-TGAGGGTATTTCGGTAATTTCAC
1 -AATCAG-GGGTATTTTGGTAATTTCAC
* * * *
68080687 AAACCAGTGGTATTTTGGTAATTTTAT
1 -AATCAGGGGTATTTTGGTAATTTCAC
* *
68080714 AAACTAGGGGTATTTTGGTAATTCTACCC
1 AATC-AGGGGTATTTTGGTAATT-T-CAC
* **
68080743 TAT-AGGGGTATTTCAGTAATTTCAC
1 AATCAGGGGTATTTTGGTAATTTCAC
68080768 AATCGAGGG
1 AATC-AGGG
68080777 TAAAATGGTA
Statistics
Matches: 89, Mismatches: 20, Indels: 14
0.72 0.16 0.11
Matches are distributed among these distances:
25 4 0.04
26 5 0.06
27 77 0.87
28 2 0.02
29 1 0.01
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (26 bp):
AATCAGGGGTATTTTGGTAATTTCAC
Found at i:68080846 original size:26 final size:27
Alignment explanation
Indices: 68080768--68080855 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 27
68080758 GTAATTTCAC
* ** *
68080768 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
*
68080795 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
68080822 AATCAAGGGTAAAA-AGTAATTCTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
68080848 AATCAAGG
1 AATCAAGG
68080856 CTTGAACCCA
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
26 20 0.35
27 37 0.65
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (27 bp):
AATCAAGGGTAAAACAGTAATTCTGTA
Found at i:68081537 original size:42 final size:43
Alignment explanation
Indices: 68081433--68081591 Score: 189
Period size: 42 Copynumber: 3.7 Consensus size: 43
68081423 ATATGTGTTA
* * *
68081433 TCGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGTGATT
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGATATATGATT
*
68081476 TACGTGTAAGACCATGTCTGGGACATTGGCATCG-TATATGATT
1 T-CGTGTAAGACCACGTCTGGGACATTGGCATCGATATATGATT
* * *
68081519 TCGTGTAAGACC-CTGTCT-GGACAGTGGTATCGATATTTGATT
1 TCGTGTAAGACCAC-GTCTGGGACATTGGCATCGATATATGATT
* * *
68081561 ACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TCGTGTAAGACCACGTCTGGGACATTGGCAT
68081592 TGTACGAGCT
Statistics
Matches: 98, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
41 12 0.12
42 37 0.38
43 19 0.19
44 30 0.31
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (43 bp):
TCGTGTAAGACCACGTCTGGGACATTGGCATCGATATATGATT
Found at i:68092589 original size:16 final size:16
Alignment explanation
Indices: 68092568--68092606 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
68092558 AACTTGAAAC
68092568 CCGAGCCAATTTGTCA
1 CCGAGCCAATTTGTCA
68092584 CCGAGCCAATTTGTCA
1 CCGAGCCAATTTGTCA
68092600 CCGAGCC
1 CCGAGCC
68092607 GATGTTGTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.23, C:0.36, G:0.21, T:0.21
Consensus pattern (16 bp):
CCGAGCCAATTTGTCA
Found at i:68093215 original size:28 final size:28
Alignment explanation
Indices: 68093183--68093240 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
68093173 CCTCTCACCG
68093183 GACCAATACTCTGGCCGGTTTCTAATCT
1 GACCAATACTCTGGCCGGTTTCTAATCT
68093211 GACCAATACTCTGGCCGGTTTCTAATCT
1 GACCAATACTCTGGCCGGTTTCTAATCT
68093239 GA
1 GA
68093241 TTGGTATAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (28 bp):
GACCAATACTCTGGCCGGTTTCTAATCT
Found at i:68094929 original size:31 final size:32
Alignment explanation
Indices: 68094893--68094964 Score: 85
Period size: 31 Copynumber: 2.3 Consensus size: 32
68094883 AAGAAAAGAT
*
68094893 AATAGTTCAACT-ACTTAAATAAAAACTTTTG
1 AATAGTTCAACTGACTTAAATAAAAACTTTTA
* * *
68094924 AATAGTTC-AGTGACTTAAATGAAAATTTTTA
1 AATAGTTCAACTGACTTAAATAAAAACTTTTA
*
68094955 AATAATTCAA
1 AATAGTTCAA
68094965 TAACTAAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
30 2 0.06
31 31 0.91
32 1 0.03
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.36
Consensus pattern (32 bp):
AATAGTTCAACTGACTTAAATAAAAACTTTTA
Found at i:68096357 original size:13 final size:13
Alignment explanation
Indices: 68096336--68096370 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
68096326 AAACATAATA
* *
68096336 TTAATATTTGGGT
1 TTAAAATTTGAGT
68096349 TTAAAATTTGAGT
1 TTAAAATTTGAGT
68096362 TTAAAATTT
1 TTAAAATTT
68096371 TATCTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.51
Consensus pattern (13 bp):
TTAAAATTTGAGT
Found at i:68099147 original size:17 final size:17
Alignment explanation
Indices: 68099106--68099148 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
68099096 AGAAATATAT
*
68099106 TGTATTCGCAGTGAATA
1 TGTATTCTCAGTGAATA
68099123 TGTATTCTCAGTGAATA
1 TGTATTCTCAGTGAATA
68099140 TGTATTCTC
1 TGTATTCTC
68099149 TCTAAGTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.42
Consensus pattern (17 bp):
TGTATTCTCAGTGAATA
Found at i:68103647 original size:26 final size:26
Alignment explanation
Indices: 68103610--68103693 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
68103600 TGATACAAAT
* *
68103610 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
68103636 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
68103662 TGATAATGGGTTAGGTAAAGGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
68103688 TGATAA
1 TGATAA
68103694 GAATTTCATA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:68105202 original size:25 final size:26
Alignment explanation
Indices: 68105174--68105225 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
68105164 TTTACAGTTT
68105174 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
68105199 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
68105225 T
1 T
68105226 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:68105263 original size:21 final size:20
Alignment explanation
Indices: 68105237--68105279 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
68105227 CATGTTTGAC
68105237 TGTTGTTATT-TACTGCATGCA
1 TGTTGTTATTAT-CTG-ATGCA
68105258 TGTTGTTATTATCTGATGCA
1 TGTTGTTATTATCTGATGCA
68105278 TG
1 TG
68105280 GGACTGGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.33
21 13 0.62
22 1 0.05
ACGTcount: A:0.19, C:0.12, G:0.21, T:0.49
Consensus pattern (20 bp):
TGTTGTTATTATCTGATGCA
Found at i:68107357 original size:26 final size:26
Alignment explanation
Indices: 68107320--68107403 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
68107310 TGATACAAAT
* *
68107320 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
68107346 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
68107372 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
68107398 TGATAA
1 TGATAA
68107404 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:68110082 original size:40 final size:40
Alignment explanation
Indices: 68110045--68110228 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
68110035 GCTACTCGTT
*
68110045 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
68110085 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
68110125 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
68110164 CAAATGCCTTC-GGATCTTAGTCCAGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
68110205 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
68110229 ACATCATTCG
Statistics
Matches: 123, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 76 0.62
41 14 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:68110156 original size:79 final size:81
Alignment explanation
Indices: 68110047--68110229 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
68110037 TACTCGTTCA
* * *
68110047 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCAG
* *
68110110 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
68110127 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCAGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCAGA
*
68110190 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
68110206 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
68110230 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCAGA
TATAGTAACTTAGCAC
Found at i:68114239 original size:40 final size:39
Alignment explanation
Indices: 68114079--68114273 Score: 255
Period size: 39 Copynumber: 4.9 Consensus size: 39
68114069 TGTGTATGAA
*
68114079 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
68114118 TGTGTGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
68114157 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
68114196 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
* *** * *
68114236 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGCA
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCA
68114274 TTTGAACGAG
Statistics
Matches: 137, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 95 0.69
40 42 0.31
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:68122294 original size:40 final size:39
Alignment explanation
Indices: 68122134--68122296 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
68122124 TGTGTATGAA
*
68122134 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
68122173 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
68122212 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
68122251 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
68122291 TGTGCG
1 TGTGCG
68122297 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:68122312 original size:40 final size:39
Alignment explanation
Indices: 68122134--68122327 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
68122124 TGTGTATGAA
* *
68122134 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
68122173 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
68122212 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
68122251 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
68122291 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
68122328 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:68129606 original size:39 final size:40
Alignment explanation
Indices: 68129512--68129615 Score: 138
Period size: 39 Copynumber: 2.6 Consensus size: 40
68129502 AGCCCGGTTA
* ** *
68129512 TAGTAACTTGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAAAAT
* *
68129552 TAGTAACTCGTACAAATGCCTTCGGG-CTTAGCCCAAAAT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAAAAT
*
68129591 TAGTAACTCCCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGG
68129616 ATCTTAGTCC
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 32 0.57
40 24 0.43
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAAAAT
Found at i:68129662 original size:40 final size:40
Alignment explanation
Indices: 68129484--68129665 Score: 183
Period size: 40 Copynumber: 4.6 Consensus size: 40
68129474 GCTACTCGTT
* * * * *
68129484 CAAATGCCTTTGGGACATAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCA
* * * *
68129524 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCA
* *
68129564 CAAATGCCTTCGGG-CTTAGCCCA-AAATTAGTAACTCCCA
1 CAAATGCCTTCGGGACTTAGCCCAGATA-TAGTAACTCGCA
* * *
68129603 CAAATGCCTTC-GGATCTTAGTCCAGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCAGATATAGTAAC-TCGCA
68129644 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
68129666 GGACATCATT
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 28 0.24
40 74 0.63
41 12 0.10
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCA
Found at i:68139903 original size:44 final size:45
Alignment explanation
Indices: 68139813--68139941 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
68139803 GACAGAACGA
*
68139813 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
68139859 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
68139903 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
68139942 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:68147286 original size:44 final size:45
Alignment explanation
Indices: 68147196--68147324 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
68147186 GACAGAACGA
*
68147196 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
68147242 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
68147286 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
68147325 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:68154188 original size:44 final size:45
Alignment explanation
Indices: 68154098--68154226 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
68154088 GACAGAACGA
*
68154098 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
68154144 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
68154188 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
68154227 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:68161975 original size:40 final size:39
Alignment explanation
Indices: 68161884--68162034 Score: 128
Period size: 40 Copynumber: 3.8 Consensus size: 39
68161874 ATATAACCGT
* *
68161884 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
68161924 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * ** *
68161964 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* *
68162004 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAA-TGCCTTCGGG-TCTTAGCCCGGATA
68162035 TCATTCAATT
Statistics
Matches: 92, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 85 0.92
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:68162018 original size:80 final size:80
Alignment explanation
Indices: 68161884--68162033 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
68161874 ATATAACCGT
*
68161884 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
68161948 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
68161964 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
68162027 CCCGGAT
64 CCCGGAT
68162034 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:68169728 original size:38 final size:38
Alignment explanation
Indices: 68169641--68169797 Score: 145
Period size: 38 Copynumber: 4.0 Consensus size: 38
68169631 AAACCTGAAC
* * * ***
68169641 ATAACACCAGCACGAAGCCTACGGGACTTTAAACTTAGAT
1 ATAATACCAGCACTAAGCCTGCGGGA-TTT-AACCCGGAT
*
68169681 ATAATACCAGCACTAGGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACTAAGCCTGCGGGATTTAACCCGGAT
* * *
68169719 ATAATACCAGCACGAAGCCTACGGAATTTAACCCGGAT
1 ATAATACCAGCACTAAGCCTGCGGGATTTAACCCGGAT
* * *
68169757 ATAATTCTAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGAT
1 ATAATACCAGCACTA-AGCCTGCGGG-ATTTAA-CCCGGAT
68169797 A
1 A
68169798 CACATCAAAT
Statistics
Matches: 97, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
37 1 0.01
38 58 0.60
39 8 0.08
40 30 0.31
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.22
Consensus pattern (38 bp):
ATAATACCAGCACTAAGCCTGCGGGATTTAACCCGGAT
Found at i:68169794 original size:78 final size:78
Alignment explanation
Indices: 68169641--68169797 Score: 185
Period size: 78 Copynumber: 2.0 Consensus size: 78
68169631 AAACCTGAAC
* ** *
68169641 ATAACACCAGCACGAAGCCTACGGGACTTTAAACTTAGATATAATACCAGCACTAGGCCTGCGGG
1 ATAACACCAGCACGAAGCCTACGGGAATTTAAACCCAGATATAATACCAGCACTAAGCCTGCGGG
68169706 ATTTAACCCGGAT
66 ATTTAACCCGGAT
* * * *
68169719 ATAATACCAGCACGAAGCCTAC-GGAATTT-AACCCGGATATAATTCTAGCA-TATAGCCTGCGG
1 ATAACACCAGCACGAAGCCTACGGGAATTTAAACCCAGATATAATACCAGCACTA-AGCCTGCGG
*
68169781 GTCTTTAAGCCCGGAT
65 G-ATTTAA-CCCGGAT
68169797 A
1 A
68169798 CACATCAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
75 2 0.03
76 25 0.37
77 11 0.16
78 29 0.43
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.22
Consensus pattern (78 bp):
ATAACACCAGCACGAAGCCTACGGGAATTTAAACCCAGATATAATACCAGCACTAAGCCTGCGGG
ATTTAACCCGGAT
Found at i:68170557 original size:2 final size:2
Alignment explanation
Indices: 68170550--68170576 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
68170540 CACTTTCAAA
68170550 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
68170577 CATTCGACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:68176656 original size:18 final size:18
Alignment explanation
Indices: 68176633--68176667 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
68176623 TTTTGGGTCT
68176633 AGTTTCAAATAAAGGAAA
1 AGTTTCAAATAAAGGAAA
* *
68176651 AGTTTCTAGTAAAGGAA
1 AGTTTCAAATAAAGGAA
68176668 TCTCATATGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.06, G:0.20, T:0.26
Consensus pattern (18 bp):
AGTTTCAAATAAAGGAAA
Found at i:68181026 original size:39 final size:40
Alignment explanation
Indices: 68180983--68181114 Score: 171
Period size: 39 Copynumber: 3.3 Consensus size: 40
68180973 AACAACCAGC
*
68180983 CGAATGCCTTCGGGACTTAACCCGGTTATAATAAC-CGCA
1 CGAATGCCTTCGGGACTTAACCCGGTTATAATAACTAGCA
68181022 CGAATGCCTTCGGGACTTAACCCGGTTATAATAACTAGCA
1 CGAATGCCTTCGGGACTTAACCCGGTTATAATAACTAGCA
** * *
68181062 C-AATTGCCTTC-GGATCTTAGTCCGGATATAGTAACTAGCA
1 CGAA-TGCCTTCGGGA-CTTAACCCGGTTATAATAACTAGCA
*
68181102 CAAATGCCTTCGG
1 CGAATGCCTTCGG
68181115 ATCTTAGTCC
Statistics
Matches: 83, Mismatches: 5, Indels: 8
0.86 0.05 0.08
Matches are distributed among these distances:
39 40 0.48
40 40 0.48
41 3 0.04
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (40 bp):
CGAATGCCTTCGGGACTTAACCCGGTTATAATAACTAGCA
Found at i:68181097 original size:40 final size:40
Alignment explanation
Indices: 68180985--68181130 Score: 163
Period size: 40 Copynumber: 3.7 Consensus size: 40
68180975 CAACCAGCCG
** * * *
68180985 AATGCCTTCGGGA-CTTAACCCGGTTATAATAAC-CGCACG
1 AATGCCTTC-GGATCTTAGTCCGGATATAATAACTAGCACA
** *
68181024 AATGCCTTCGGGA-CTTAACCCGGTTATAATAACTAGCACA
1 AATGCCTTC-GGATCTTAGTCCGGATATAATAACTAGCACA
* *
68181064 ATTGCCTTCGGATCTTAGTCCGGATATAGTAACTAGCACA
1 AATGCCTTCGGATCTTAGTCCGGATATAATAACTAGCACA
68181104 AATGCCTTCGGATCTTAGTCCGGATAT
1 AATGCCTTCGGATCTTAGTCCGGATAT
68181131 CATCCGAATA
Statistics
Matches: 97, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 36 0.37
40 61 0.63
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (40 bp):
AATGCCTTCGGATCTTAGTCCGGATATAATAACTAGCACA
Found at i:68189199 original size:40 final size:39
Alignment explanation
Indices: 68189113--68189243 Score: 138
Period size: 40 Copynumber: 3.3 Consensus size: 39
68189103 AACCAGTCCG
** *
68189113 AATGCCTTCGGGACTTAACCCGGTTATAATAACCCGCATG
1 AATGCCTTCGGGACTTAACCCGGTTATAATAACTAGCA-C
68189153 AATGCCTTCGGGACTTAACCCGGTTATAATAACTAGCAC
1 AATGCCTTCGGGACTTAACCCGGTTATAATAACTAGCAC
* ** * * *
68189192 AATTGCCTTC-AGATCTTAGTCCAGATATAGTAACTAGCAC
1 AA-TGCCTTCGGGA-CTTAACCCGGTTATAATAACTAGCAC
68189232 AAATGCCTTCGG
1 -AATGCCTTCGG
68189244 ATCTTAGTCC
Statistics
Matches: 77, Mismatches: 10, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
39 4 0.05
40 71 0.92
41 2 0.03
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGTTATAATAACTAGCAC
Found at i:68189247 original size:40 final size:40
Alignment explanation
Indices: 68189177--68189259 Score: 139
Period size: 40 Copynumber: 2.1 Consensus size: 40
68189167 TTAACCCGGT
*
68189177 TATAATAACTAGCACAATTGCCTTCAGATCTTAGTCCAGA
1 TATAATAACTAGCACAAATGCCTTCAGATCTTAGTCCAGA
* *
68189217 TATAGTAACTAGCACAAATGCCTTCGGATCTTAGTCCAGA
1 TATAATAACTAGCACAAATGCCTTCAGATCTTAGTCCAGA
68189257 TAT
1 TAT
68189260 CATCCGCATA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (40 bp):
TATAATAACTAGCACAAATGCCTTCAGATCTTAGTCCAGA
Found at i:68199329 original size:40 final size:39
Alignment explanation
Indices: 68199227--68199378 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 39
68199217 AAATTGAATG
* * * * *
68199227 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-CATT
* **
68199267 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGC-ATT
68199307 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTG-TGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCT-AG-CATT
* *
68199347 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
68199379 ACATGCTTAT
Statistics
Matches: 93, Mismatches: 13, Indels: 11
0.79 0.11 0.09
Matches are distributed among these distances:
39 4 0.04
40 86 0.92
41 3 0.03
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGCATT
Found at i:68199392 original size:40 final size:39
Alignment explanation
Indices: 68199265--68199394 Score: 140
Period size: 40 Copynumber: 3.3 Consensus size: 39
68199255 ATGCTGGAAA
* * *
68199265 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CTGC
*
68199306 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGTG-AGT-C
1 TTATATCCGGGCTAAGACCCGAAGGCATT--TGTGCACTGC
*
68199344 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAC-TGC
68199385 TTATATCCGG
1 TTATATCCGG
68199395 TTATATTCCG
Statistics
Matches: 75, Mismatches: 7, Indels: 15
0.77 0.07 0.15
Matches are distributed among these distances:
38 5 0.07
39 1 0.01
40 64 0.85
41 1 0.01
42 4 0.05
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACTGC
Found at i:68200875 original size:29 final size:29
Alignment explanation
Indices: 68200842--68200900 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
68200832 GAGCATAAGC
68200842 TCCACTTATATCAAAGCACATGATTTGCA
1 TCCACTTATATCAAAGCACATGATTTGCA
68200871 TCCACTTATATCAAAGCACATGATTTGCA
1 TCCACTTATATCAAAGCACATGATTTGCA
68200900 T
1 T
68200901 ACACATGATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.32
Consensus pattern (29 bp):
TCCACTTATATCAAAGCACATGATTTGCA
Found at i:68210363 original size:16 final size:17
Alignment explanation
Indices: 68210342--68210377 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
68210332 GTAACGCCCT
68210342 AAAAATCCC-AAAACCC
1 AAAAATCCCGAAAACCC
*
68210358 AAAAATCCCGAAATCCC
1 AAAAATCCCGAAAACCC
68210375 AAA
1 AAA
68210378 CTTTCTTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.56, C:0.33, G:0.03, T:0.08
Consensus pattern (17 bp):
AAAAATCCCGAAAACCC
Found at i:68211808 original size:110 final size:111
Alignment explanation
Indices: 68211681--68211908 Score: 390
Period size: 110 Copynumber: 2.1 Consensus size: 111
68211671 TCTGTTTTCT
*
68211681 TATAAACACATATCATTTATTTCATTATATCAATATTTCATATACCATAGTTTCCATGTATTCCA
1 TATATACACATATCATTTATTTCATTATATCAATATTTCATATACCATAGTTTCCATGTATTCCA
*
68211746 CATATATTTATTTTCCTCCTCCT-T-TCTGTTTCCACATCCTTAATG
66 CATATATTTATTTTCCTCCTCCTCTATCCG-TTCCACATCCTTAATG
68211791 TATATACACAGTA-CATTTATTTCATTATATCAATATTTCATATACCATAGTTTCCATGTATTCC
1 TATATACACA-TATCATTTATTTCATTATATCAATATTTCATATACCATAGTTTCCATGTATTCC
68211855 ACATATATTTATTTTCCTCCTCCTCCTATCCGTTCCACATCCTTAATG
65 ACATATATTTATTTTCCTCCTCCT-CTATCCGTTCCACATCCTTAATG
68211903 TATATA
1 TATATA
68211909 GCATTCTTGT
Statistics
Matches: 112, Mismatches: 2, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
110 84 0.75
111 2 0.02
112 23 0.21
113 3 0.03
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (111 bp):
TATATACACATATCATTTATTTCATTATATCAATATTTCATATACCATAGTTTCCATGTATTCCA
CATATATTTATTTTCCTCCTCCTCTATCCGTTCCACATCCTTAATG
Found at i:68213341 original size:30 final size:30
Alignment explanation
Indices: 68213307--68213367 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
68213297 TCCTTAACTC
68213307 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
68213337 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
68213367 A
1 A
68213368 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:68215017 original size:29 final size:28
Alignment explanation
Indices: 68214973--68215043 Score: 79
Period size: 29 Copynumber: 2.5 Consensus size: 28
68214963 AATGTGACTA
* * *
68214973 GGCCTAACGGGCCATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAATATGA-ATG
* *
68215002 GGCCTAATGGGTCATATGAATATGAATG
1 GGCCTAATGGGCCATATAAATATGAATG
*
68215030 GGCTTAATGGGCCA
1 GGCCTAATGGGCCA
68215044 GATACAGGTA
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
28 14 0.40
29 21 0.60
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (28 bp):
GGCCTAATGGGCCATATAAATATGAATG
Found at i:68219016 original size:16 final size:16
Alignment explanation
Indices: 68218991--68219029 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
68218981 ATGTATCGGC
* *
68218991 AAAAGTCGAAATGCCG
1 AAAAGCCGAAATACCG
68219007 AAAAGCCGAAATACCG
1 AAAAGCCGAAATACCG
68219023 AAAAGCC
1 AAAAGCC
68219030 AAAAGTTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.49, C:0.23, G:0.21, T:0.08
Consensus pattern (16 bp):
AAAAGCCGAAATACCG
Found at i:68219325 original size:28 final size:29
Alignment explanation
Indices: 68219269--68219329 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
68219259 GGCCTAACGA
*
68219269 GCCATATAAATGTGATTTGGGCCCAATGG
1 GCCATATAAATATGATTTGGGCCCAATGG
* **
68219298 GCCATATGAATATGA-TTGGGCTTAATGG
1 GCCATATAAATATGATTTGGGCCCAATGG
68219326 GCCA
1 GCCA
68219330 GATACAGGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 15 0.54
29 13 0.46
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (29 bp):
GCCATATAAATATGATTTGGGCCCAATGG
Found at i:68225298 original size:79 final size:78
Alignment explanation
Indices: 68225156--68225341 Score: 218
Period size: 79 Copynumber: 2.4 Consensus size: 78
68225146 TGAATGTTCG
* *
68225156 TGTGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAATAAATCCGGGCTAAGCCCGAAG
1 TGTGATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTG-ATAAATCCGGGCTAAGCCCGAAG
68225221 GCAATTGTGCGAGT
65 GCAATTGTGCGAGT
* * *
68225235 TGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTG-TGATATCCGGGTTAAGTCCCGA
1 TGTGATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAG-TGAT-AAATCCGGGCTAAG-CCCGA
*
68225298 AGGCATTTGTGC-AGGT
63 AGGCAATTGTGCGA-GT
* *
68225314 TACT-ATAACCGGGCTATGTCCCGAAGGC
1 T-GTGATAACCGGGCTAAGTCCCGAAGGC
68225342 TTTTGAACGA
Statistics
Matches: 92, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.01
78 31 0.34
79 50 0.54
80 10 0.11
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (78 bp):
TGTGATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTGATAAATCCGGGCTAAGCCCGAAGG
CAATTGTGCGAGT
Found at i:68225326 original size:40 final size:40
Alignment explanation
Indices: 68225156--68225346 Score: 214
Period size: 39 Copynumber: 4.8 Consensus size: 40
68225146 TGAATGTTCG
*
68225156 TGTGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-
1 TGTGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
* *
68225195 TG-AATAAATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGT
1 TGTGAT-AA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
* *
68225235 TGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGT
1 TGTGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
* *
68225274 TGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGC-AGGT
1 TGTGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GT
* * *
68225314 TACT-ATAACCGGGCTATGTCCCGAAGGCTTTTG
1 T-GTGATAACCGGGCTAAGTCCCGAAGGCATTTG
68225347 AACGAGTAGC
Statistics
Matches: 133, Mismatches: 12, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
38 2 0.02
39 71 0.53
40 57 0.43
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (40 bp):
TGTGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
Found at i:68235153 original size:29 final size:29
Alignment explanation
Indices: 68235120--68235184 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
68235110 GTGACGAGAT
68235120 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
68235149 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
68235178 CGGCACT
1 TGGCACT
68235185 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:68242999 original size:29 final size:29
Alignment explanation
Indices: 68242966--68243030 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
68242956 GTGACGAGAT
68242966 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
68242995 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
68243024 CGGCACT
1 TGGCACT
68243031 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:68244638 original size:43 final size:43
Alignment explanation
Indices: 68244591--68244726 Score: 136
Period size: 43 Copynumber: 3.2 Consensus size: 43
68244581 CCCGGACGTT
* *
68244591 GTCTTACATGTAATTCAATATCGATGCCTATGTCCCAGACAGG
1 GTCTTACACGTAATTCAATATCGATGCCTATGTCCCAGACACG
* * *
68244634 GTCTTACACGAAATT-AGATAT-GATGCCGATGTCCCAGACATG
1 GTCTTACACGTAATTCA-ATATCGATGCCTATGTCCCAGACACG
* * *
68244676 GTCTTATACGTAAATCTC-A-ATCGAGGCCTGTGTCCCAGACACG
1 GTCTTACACGT-AAT-TCAATATCGATGCCTATGTCCCAGACACG
*
68244719 ATCTTACA
1 GTCTTACA
68244727 TGCTGTCTCA
Statistics
Matches: 76, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
42 31 0.41
43 44 0.58
44 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (43 bp):
GTCTTACACGTAATTCAATATCGATGCCTATGTCCCAGACACG
Found at i:68254090 original size:5 final size:5
Alignment explanation
Indices: 68254080--68254124 Score: 72
Period size: 5 Copynumber: 8.6 Consensus size: 5
68254070 CTGTGTGTTC
68254080 TTTAT TTTAT TTTATTT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTA--T TTTAT TTTAT TTTAT TTTAT TTTAT TTT
68254125 CACAAATTGG
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
5 33 0.87
7 5 0.13
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:68258749 original size:25 final size:25
Alignment explanation
Indices: 68258719--68258776 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
68258709 TTAACTACAT
68258719 GTATTTAATTCAATCAATTAATTTA
1 GTATTTAATTCAATCAATTAATTTA
* * *
68258744 GTATTTAGTTCCATTAATTAATTTA
1 GTATTTAATTCAATCAATTAATTTA
68258769 GT-TTTAAT
1 GTATTTAAT
68258777 CAAATTATAC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 5 0.17
25 24 0.83
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (25 bp):
GTATTTAATTCAATCAATTAATTTA
Found at i:68259709 original size:40 final size:39
Alignment explanation
Indices: 68259631--68259726 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 39
68259621 GGCGTTTACA
* **
68259631 AAAAAACGCCGCTAAAGGTCGACCTATAGCAGTGTTTTT
1 AAAAAACGCCGCTAAAAGTCGACCTATAGCAGCATTTTT
* *
68259670 AAAAAAGCGCCGCTAAAAGTCGACCTATGGCGGCATTTTT
1 AAAAAA-CGCCGCTAAAAGTCGACCTATAGCAGCATTTTT
***
68259710 CTCAAACGCCGCTAAAA
1 AAAAAACGCCGCTAAAA
68259727 TATTAATCCG
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
39 17 0.35
40 31 0.65
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.22
Consensus pattern (39 bp):
AAAAAACGCCGCTAAAAGTCGACCTATAGCAGCATTTTT
Found at i:68259936 original size:38 final size:38
Alignment explanation
Indices: 68259871--68259986 Score: 128
Period size: 40 Copynumber: 3.0 Consensus size: 38
68259861 CTTTGAGATT
*
68259871 TAGTGGCATTAGCGGCG-TTTTTCAAAAAGCGCCGCTAA
1 TAGTGGCATTAGCAGCGCTTTTTCAAAAA-CGCCGCTAA
* *
68259909 TAGTGGCATTAGCAGCGCTTTGTAAAAAACGCCGC-AA
1 TAGTGGCATTAGCAGCGCTTTTTCAAAAACGCCGCTAA
* * *
68259946 TAGATTGAGTATTAGCAGCGCTTTTTGATAAACGCCGCTAA
1 TAG--TG-GCATTAGCAGCGCTTTTTCAAAAACGCCGCTAA
68259987 AGCTCGATAA
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
37 5 0.08
38 22 0.33
39 11 0.17
40 26 0.39
41 2 0.03
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (38 bp):
TAGTGGCATTAGCAGCGCTTTTTCAAAAACGCCGCTAA
Found at i:68260680 original size:22 final size:22
Alignment explanation
Indices: 68260651--68260704 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
68260641 CTTAAATCTC
*
68260651 AAAC-CTTAAA-CTATAAGCCCT
1 AAACTCTTAAATC-ATAAACCCT
68260672 AAACTCTTAAATCATAAACCCT
1 AAACTCTTAAATCATAAACCCT
*
68260694 AAAATCTTAAA
1 AAACTCTTAAA
68260705 AATAAATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 4 0.14
22 24 0.83
23 1 0.03
ACGTcount: A:0.48, C:0.24, G:0.02, T:0.26
Consensus pattern (22 bp):
AAACTCTTAAATCATAAACCCT
Found at i:68261203 original size:21 final size:21
Alignment explanation
Indices: 68261142--68261289 Score: 129
Period size: 21 Copynumber: 7.0 Consensus size: 21
68261132 TTAAGTTCAA
68261142 GGTTTAGGGTATTGGGTTTAG
1 GGTTTAGGGTATTGGGTTTAG
** ** **
68261163 AATTTAGTTTATAAGGTTTAG
1 GGTTTAGGGTATTGGGTTTAG
*
68261184 GGTATT-GGGTATTGGATTTAG
1 GGT-TTAGGGTATTGGGTTTAG
** *
68261205 GGTTTAGTCTATAGGGTTTAG
1 GGTTTAGGGTATTGGGTTTAG
** *
68261226 GGTTTAGTCTATAGGGTTTAG
1 GGTTTAGGGTATTGGGTTTAG
*
68261247 GGTATT-GGGTATTTGGTTTAG
1 GGT-TTAGGGTATTGGGTTTAG
68261268 GGTTTAGGGTATTGGGGTTTAG
1 GGTTTAGGGTATT-GGGTTTAG
68261290 TGTATTGGTT
Statistics
Matches: 100, Mismatches: 22, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
20 4 0.04
21 85 0.85
22 11 0.11
ACGTcount: A:0.19, C:0.01, G:0.36, T:0.44
Consensus pattern (21 bp):
GGTTTAGGGTATTGGGTTTAG
Found at i:68261209 original size:28 final size:28
Alignment explanation
Indices: 68261177--68261283 Score: 92
Period size: 28 Copynumber: 3.6 Consensus size: 28
68261167 TAGTTTATAA
68261177 GGTTTAGGGTATTGGGTATTGGATTTAG
1 GGTTTAGGGTATTGGGTATTGGATTTAG
** *
68261205 GGTTTAGTCTATAGGGT-TTAGGGTTTAGTCTATAG
1 GGTTTAGGGTATTGGGTATT--GG---A-T-T-TAG
68261240 GGTTTAGGGTATTGGGTATTTGG-TTTAG
1 GGTTTAGGGTATTGGGTA-TTGGATTTAG
68261268 GGTTTAGGGTATTGGG
1 GGTTTAGGGTATTGGG
68261284 GTTTAGTGTA
Statistics
Matches: 63, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
27 2 0.03
28 33 0.52
29 3 0.05
30 1 0.02
32 1 0.02
33 1 0.02
34 1 0.02
35 19 0.30
37 2 0.03
ACGTcount: A:0.17, C:0.02, G:0.38, T:0.43
Consensus pattern (28 bp):
GGTTTAGGGTATTGGGTATTGGATTTAG
Found at i:68261244 original size:63 final size:63
Alignment explanation
Indices: 68261155--68261274 Score: 188
Period size: 63 Copynumber: 1.9 Consensus size: 63
68261145 TTAGGGTATT
*
68261155 GGGTTTAGAATTTAGTTTATAAGGTTTAGGGTATTGGGTA-TTGGATTTAGGGTTTAGTCTATA
1 GGGTTTAGAATTTAGTCTATAAGGTTTAGGGTATTGGGTATTTGG-TTTAGGGTTTAGTCTATA
** *
68261218 GGGTTTAGGGTTTAGTCTATAGGGTTTAGGGTATTGGGTATTTGGTTTAGGGTTTAG
1 GGGTTTAGAATTTAGTCTATAAGGTTTAGGGTATTGGGTATTTGGTTTAGGGTTTAG
68261275 GGTATTGGGG
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
63 48 0.92
64 4 0.08
ACGTcount: A:0.20, C:0.02, G:0.34, T:0.44
Consensus pattern (63 bp):
GGGTTTAGAATTTAGTCTATAAGGTTTAGGGTATTGGGTATTTGGTTTAGGGTTTAGTCTATA
Found at i:68261299 original size:28 final size:28
Alignment explanation
Indices: 68261216--68261300 Score: 84
Period size: 28 Copynumber: 3.0 Consensus size: 28
68261206 GTTTAGTCTA
*
68261216 TAGGGT-TTAGGGTTTAGTCTATAGGGTT
1 TAGGGTATTGGGGTTTAGTCTAT-GGGTT
* * *
68261244 TAGGGTATTGGGTATTTGGTTTA-GGGTT
1 TAGGGTATTGGG-GTTTAGTCTATGGGTT
* *
68261272 TAGGGTATTGGGGTTTAGTGTATTGGTT
1 TAGGGTATTGGGGTTTAGTCTATGGGTT
68261300 T
1 T
68261301 TGGGCTTAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
27 7 0.15
28 28 0.61
29 4 0.09
30 7 0.15
ACGTcount: A:0.15, C:0.01, G:0.38, T:0.46
Consensus pattern (28 bp):
TAGGGTATTGGGGTTTAGTCTATGGGTT
Found at i:68261685 original size:83 final size:84
Alignment explanation
Indices: 68261553--68261812 Score: 262
Period size: 84 Copynumber: 3.1 Consensus size: 84
68261543 GTACTAGGTC
* ** * * * *
68261553 ATAAACGCCACTAAAAGTATGAGAAATTGTATTG-AAAC-ATCGTTGTTTTATTTCG-CGGGTAG
1 ATAAACGCCACTAAAAATATGAGAAAACG-AATGAAAACTA-CGTCGTTTTATGTCGCCCGGT-G
* *
68261615 T-GG-ATTAAGTGGCGCTATCTT
63 TCGGAATT-AGTGGCGCTACCGT
* * *
68261636 ATAAACGCCACTAAAAATATGAGAAAACGAATGAAAACTACGTCATTTTATGTGGCCCGGTTTCG
1 ATAAACGCCACTAAAAATATGAGAAAACGAATGAAAACTACGTCGTTTTATGTCGCCCGGTGTCG
68261701 GAATTAGTGGCGCTACCGT
66 GAATTAGTGGCGCTACCGT
* * * * * *
68261720 ATAAACGCCACTAAGAATATGAGAAACCGAATGAAAACTACGTCGTTTTATGTGGCACGGTTTAG
1 ATAAACGCCACTAAAAATATGAGAAAACGAATGAAAACTACGTCGTTTTATGTCGCCCGGTGTCG
68261785 GAATTAGTGGCGCTATCC-T
66 GAATTAGTGGCGCTA-CCGT
*
68261804 AGAAACGCC
1 ATAAACGCC
68261813 GCAAAAAAAC
Statistics
Matches: 153, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
82 3 0.02
83 42 0.27
84 103 0.67
85 5 0.03
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.27
Consensus pattern (84 bp):
ATAAACGCCACTAAAAATATGAGAAAACGAATGAAAACTACGTCGTTTTATGTCGCCCGGTGTCG
GAATTAGTGGCGCTACCGT
Found at i:68261739 original size:84 final size:83
Alignment explanation
Indices: 68261622--68261812 Score: 292
Period size: 84 Copynumber: 2.3 Consensus size: 83
68261612 TAGTGGATTA
*
68261622 AGTGGCGCTATCTTATAAACGCCACTAAAAATATGAGAAAACGAATGAAAACTACGTCATTTTAT
1 AGTGGCGCTA-CCTATAAACGCCACTAAAAATATGAGAAAACGAATGAAAACTACGTCATTTTAT
* *
68261687 GTGGCCCGGTTTCGGAATT
65 GTGGCACGGTTTAGGAATT
* * *
68261706 AGTGGCGCTACCGTATAAACGCCACTAAGAATATGAGAAACCGAATGAAAACTACGTCGTTTTAT
1 AGTGGCGCTACC-TATAAACGCCACTAAAAATATGAGAAAACGAATGAAAACTACGTCATTTTAT
68261771 GTGGCACGGTTTAGGAATT
65 GTGGCACGGTTTAGGAATT
*
68261790 AGTGGCGCTATCCTAGAAACGCC
1 AGTGGCGCTA-CCTATAAACGCC
68261813 GCAAAAAAAC
Statistics
Matches: 98, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
83 1 0.01
84 95 0.97
85 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (83 bp):
AGTGGCGCTACCTATAAACGCCACTAAAAATATGAGAAAACGAATGAAAACTACGTCATTTTATG
TGGCACGGTTTAGGAATT
Found at i:68262192 original size:16 final size:16
Alignment explanation
Indices: 68262171--68262203 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
68262161 GGAATGCAGA
68262171 TTTCTGTTGTTAATGC
1 TTTCTGTTGTTAATGC
68262187 TTTCTGTTGTTAATGC
1 TTTCTGTTGTTAATGC
68262203 T
1 T
68262204 CAGCACTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.18, T:0.58
Consensus pattern (16 bp):
TTTCTGTTGTTAATGC
Found at i:68264218 original size:50 final size:51
Alignment explanation
Indices: 68264157--68264263 Score: 137
Period size: 50 Copynumber: 2.1 Consensus size: 51
68264147 AGATCTTAAG
* * * *
68264157 TTTATATATTCTATCAATTT-GATCTTGATTTAACAAA-TTAAATCGTAATA
1 TTTATATATTCTATCAATTTAG-TCATAATTTAACAAATTTAAATCATAACA
* *
68264207 TTTATATATTCTGTCAATTTAGTCATAATTTAACAAATTTAACTCATAACA
1 TTTATATATTCTATCAATTTAGTCATAATTTAACAAATTTAAATCATAACA
68264258 TTTATA
1 TTTATA
68264264 CGTTATGTTA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
50 32 0.65
51 17 0.35
ACGTcount: A:0.38, C:0.11, G:0.05, T:0.46
Consensus pattern (51 bp):
TTTATATATTCTATCAATTTAGTCATAATTTAACAAATTTAAATCATAACA
Found at i:68264663 original size:3 final size:3
Alignment explanation
Indices: 68264657--68264687 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
68264647 TTTTAAGCTT
68264657 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
68264688 TATTATTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:68264692 original size:3 final size:3
Alignment explanation
Indices: 68264686--68264742 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
68264676 AATAATAATA
68264686 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
68264734 ATT ATT ATT
1 ATT ATT ATT
68264743 GTTTGTTGAT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:68265194 original size:13 final size:13
Alignment explanation
Indices: 68265176--68265205 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
68265166 CCACATAATA
68265176 CATAAATATATAT
1 CATAAATATATAT
68265189 CATAAATATATAT
1 CATAAATATATAT
68265202 CATA
1 CATA
68265206 TCATAACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (13 bp):
CATAAATATATAT
Found at i:68265219 original size:9 final size:9
Alignment explanation
Indices: 68265207--68265292 Score: 68
Period size: 9 Copynumber: 9.6 Consensus size: 9
68265197 TATATCATAT
68265207 CATAACTTA
1 CATAACTTA
68265216 CATAACTTA
1 CATAACTTA
*
68265225 CATACCTTA
1 CATAACTTA
* *
68265234 TATAAATGTA
1 CATAACT-TA
* * *
68265244 TATCA-TAA
1 CATAACTTA
*
68265252 CGTAACTTA
1 CATAACTTA
68265261 CATAACTTA
1 CATAACTTA
68265270 CA-AAGCTTA
1 CATAA-CTTA
*
68265279 CTTAACTTA
1 CATAACTTA
68265288 CATAA
1 CATAA
68265293 TACATAAATA
Statistics
Matches: 60, Mismatches: 13, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
8 5 0.08
9 47 0.78
10 8 0.13
ACGTcount: A:0.43, C:0.20, G:0.03, T:0.34
Consensus pattern (9 bp):
CATAACTTA
Found at i:68270430 original size:13 final size:14
Alignment explanation
Indices: 68270414--68270442 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
68270404 TTCTAAATAT
68270414 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
68270427 TTATAATTGTTTAA
1 TTATAATTGTTTAA
68270441 TT
1 TT
68270443 CAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:68271177 original size:31 final size:31
Alignment explanation
Indices: 68271139--68271205 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 31
68271129 AGTTGTATTT
*
68271139 TTTTATGCTAAATTTGTTGTTTTTGGCTGCA
1 TTTTATGCTAAATTTGTTGTATTTGGCTGCA
* * *
68271170 TTTTATGCTATATTTGTTGTATTTGGTTGGA
1 TTTTATGCTAAATTTGTTGTATTTGGCTGCA
68271201 TTTTA
1 TTTTA
68271206 ATGTAGGAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.16, C:0.06, G:0.19, T:0.58
Consensus pattern (31 bp):
TTTTATGCTAAATTTGTTGTATTTGGCTGCA
Found at i:68271324 original size:43 final size:41
Alignment explanation
Indices: 68271277--68271359 Score: 121
Period size: 43 Copynumber: 2.0 Consensus size: 41
68271267 TTTGTGGGAA
*
68271277 AAACGCCGCTAAAAGCCATGACTTTTAGCGGCGCATTTTTTTC
1 AAACGCCACTAAAAGCCATGACTTTTAGC-G-GCATTTTTTTC
* *
68271320 AAACGCCACTAAAAGTCATGGCTTTTAGCGGCATTTTTTT
1 AAACGCCACTAAAAGCCATGACTTTTAGCGGCATTTTTTT
68271360 TAAATAAACG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 10 0.27
42 1 0.03
43 26 0.70
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.33
Consensus pattern (41 bp):
AAACGCCACTAAAAGCCATGACTTTTAGCGGCATTTTTTTC
Found at i:68272725 original size:26 final size:24
Alignment explanation
Indices: 68272672--68272728 Score: 71
Period size: 26 Copynumber: 2.3 Consensus size: 24
68272662 TTATCTTTAT
*
68272672 TTAAAAAAAGGTAAATTAGTTCTG
1 TTAAAAAAAGGTAAATTAGTTCTA
68272696 TTAAATAAAAGAGTAAATTAG-TCTTA
1 TTAAA-AAAAG-GTAAATTAGTTC-TA
68272722 TTAAAAA
1 TTAAAAA
68272729 TACAAAGCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
24 5 0.17
25 9 0.31
26 15 0.52
ACGTcount: A:0.51, C:0.04, G:0.12, T:0.33
Consensus pattern (24 bp):
TTAAAAAAAGGTAAATTAGTTCTA
Found at i:68276973 original size:26 final size:27
Alignment explanation
Indices: 68276944--68276995 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
68276934 TTTTAATTTT
*
68276944 AAAATTT-AGTAAATTAATCTCTTTCA
1 AAAATTTAAGCAAATTAATCTCTTTCA
*
68276970 AAAATTTAAAGCAATTTAATCTCTTT
1 AAAATTT-AAGCAAATTAATCTCTTT
68276996 TAATTTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 7 0.32
28 15 0.68
ACGTcount: A:0.42, C:0.12, G:0.04, T:0.42
Consensus pattern (27 bp):
AAAATTTAAGCAAATTAATCTCTTTCA
Found at i:68279585 original size:2 final size:2
Alignment explanation
Indices: 68279578--68279631 Score: 51
Period size: 2 Copynumber: 28.5 Consensus size: 2
68279568 TATGTACACA
*
68279578 AT AT AT AT A- AT AT AT -T AA AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
68279617 CT AT AA AA AT AT AT A
1 AT AT AT AT AT AT AT A
68279632 CATGGTATAA
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
1 3 0.07
2 40 0.93
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:68279591 original size:9 final size:9
Alignment explanation
Indices: 68279577--68279622 Score: 60
Period size: 9 Copynumber: 5.2 Consensus size: 9
68279567 GTATGTACAC
68279577 AATATATAT
1 AATATATAT
68279586 AATATAT-T
1 AATATATAT
68279594 AA-ATATAT
1 AATATATAT
68279602 ATATATATAT
1 A-ATATATAT
*
68279612 AATATCTAT
1 AATATATAT
68279621 AA
1 AA
68279623 AAATATATAC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
7 4 0.12
8 5 0.15
9 17 0.52
10 7 0.21
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (9 bp):
AATATATAT
Found at i:68281617 original size:87 final size:86
Alignment explanation
Indices: 68281443--68282075 Score: 738
Period size: 87 Copynumber: 7.3 Consensus size: 86
68281433 ATCTATAATT
* * * * * *
68281443 TTCAGCCTGTTACCCTACTACTTAGGGG-TCAAGGCTCATCGTCTTTGATCTG-CTCCACTACTG
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAA-GCCCTTCGTCTTCGATCTGTTTCC-CTACTG
* * *
68281506 CTTAGGGAGATAAGATCTGTAAA
64 CTTAGGGGGTTAAGATCTGGAAA
* * ** *
68281529 TTCAGCCCGTTACCCTACTACTTAGGGGTTTGAAGCCCTTCACCTTCGATCTGTTTCCTTACTGC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTT-AAGCCCTTCGTCTTCGATCTGTTTCCCTACTGC
68281594 TTAGGGGGTTAAGATCTGGAAA
65 TTAGGGGGTTAAGATCTGGAAA
* * *
68281616 TTCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCGTCTTTGATCTGTTTCCCTACTGC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAA-GCCCTTCGTCTTCGATCTGTTTCCCTACTGC
*
68281681 TTAAGGGGTTAAGATCTGGAAA
65 TTAGGGGGTTAAGATCTGGAAA
* *
68281703 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAAGCCCATCGTCTTCGATCTGTTTCCTTACTGC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTT-AAGCCCTTCGTCTTCGATCTGTTTCCCTACTGC
68281768 TTAGGGGGTTAAGATCT--ACAA
65 TTAGGGGGTTAAGATCTGGA-AA
** ** * * *
68281789 TTTGGTTTGTTACCCTACTGCTTAAGGTTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTAC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAG-CCCTTCGTCTTCGATCTGTTTCCCTACTGC
*
68281854 TTATGGGGTTAAGATCTGGAAA
65 TTAGGGGGTTAAGATCTGGAAA
** * * *
68281876 TTCAGCCTGTTGTCCTACTGCTTAGGGGTTTAAGGCTCTTCGCCTTCGATCTG-CTCCACTACTG
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAA-GCCCTTCGTCTTCGATCTGTTTCC-CTACTG
* * *
68281940 CTTAGGGAGATAAGATCT-GCAA
64 CTTAGGGGGTTAAGATCTGGAAA
** ** * *
68281962 TTTGGTATGTTACCCTACTGCTTAGGGTTTTAAGACCCTTCGTCTTCGATTTGTTTCCCTACTGC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAG-CCCTTCGTCTTCGATCTGTTTCCCTACTGC
* *
68282027 TTAGAGGGTTAAGATCTGTAAA
65 TTAGGGGGTTAAGATCTGGAAA
68282049 TTCAGCCTGTTACCCTACTGCTTAGGG
1 TTCAGCCTGTTACCCTACTGCTTAGGG
68282076 AGATAAGGCT
Statistics
Matches: 464, Mismatches: 69, Indels: 27
0.83 0.12 0.05
Matches are distributed among these distances:
85 5 0.01
86 167 0.36
87 283 0.61
88 9 0.02
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (86 bp):
TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGCCCTTCGTCTTCGATCTGTTTCCCTACTGCT
TAGGGGGTTAAGATCTGGAAA
Found at i:68281640 original size:43 final size:43
Alignment explanation
Indices: 68281500--68282075 Score: 190
Period size: 44 Copynumber: 13.3 Consensus size: 43
68281490 ATCTGCTCCA
* * * *
68281500 CTACTGCTTAGGGAGATAAGATCTGTAAATTCAGCCCGTTACC
1 CTACTGCTTAGGGGGTTAAGATCTGGAAATTCAGCCTGTTACC
* * ** ** ** * *
68281543 CTACTACTTAGGGGTTTGAAGCCCTTCACCTTC-GATCTGTTTCC
1 CTACTGCTTAGGGGGTT-AAGATCTGGAAATTCAG-CCTGTTACC
*
68281587 TTACTGCTTAGGGGGTTAAGATCTGGAAATTCAGCCTGTTACC
1 CTACTGCTTAGGGGGTTAAGATCTGGAAATTCAGCCTGTTACC
* * ** * *** * * *
68281630 CTACTACTTAGGGGTTTAAGGCCCATCGTCTTTGA-TCTGTTTCC
1 CTACTGCTTAGGGGGTTAA-GATC-TGGAAATTCAGCCTGTTACC
*
68281674 CTACTGCTTAAGGGGTTAAGATCTGGAAATTCAGCCTGTTACC
1 CTACTGCTTAGGGGGTTAAGATCTGGAAATTCAGCCTGTTACC
* ** * ** * *
68281717 CTACTGCTTAGGGGTTTAAAGCCCATCG-TCTTC-GATCTGTTTCC
1 CTACTGCTTAGGGGGTT-AAGATC-TGGAAATTCAG-CCTGTTACC
* ** **
68281761 TTACTGCTTAGGGGGTTAAGATCT--ACAATTTGGTTTGTTACC
1 CTACTGCTTAGGGGGTTAAGATCTGGA-AATTCAGCCTGTTACC
* ** * * ** * *
68281803 CTACTGCTTAAGGTTTTAAGACCCTTCG-TCTTC-GATCTGTTTCC
1 CTACTGCTTAGGGGGTTAAGA-TC-TGGAAATTCAG-CCTGTTACC
* * **
68281847 CTACTACTTATGGGGTTAAGATCTGGAAATTCAGCCTGTTGTC
1 CTACTGCTTAGGGGGTTAAGATCTGGAAATTCAGCCTGTTACC
* * * ** * *
68281890 CTACTGCTTAGGGGTTTAAGGCTCTTCG-CCTTC-GATCTGCT-CC
1 CTACTGCTTAGGGGGTTAA-GATC-TGGAAATTCAG-CCTGTTACC
* * * ** **
68281933 ACTACTGCTTAGGGAGATAAGATCT-GCAATTTGGTATGTTACC
1 -CTACTGCTTAGGGGGTTAAGATCTGGAAATTCAGCCTGTTACC
** * * ** ** *
68281976 CTACTGCTTAGGGTTTTAAGACCCTTCG-TCTTC-GATTTGTTTCC
1 CTACTGCTTAGGGGGTTAAGA-TC-TGGAAATTCAG-CCTGTTACC
* *
68282020 CTACTGCTTAGAGGGTTAAGATCTGTAAATTCAGCCTGTTACC
1 CTACTGCTTAGGGGGTTAAGATCTGGAAATTCAGCCTGTTACC
68282063 CTACTGCTTAGGG
1 CTACTGCTTAGGG
68282076 AGATAAGGCT
Statistics
Matches: 374, Mismatches: 127, Indels: 64
0.66 0.22 0.11
Matches are distributed among these distances:
41 1 0.00
42 60 0.16
43 136 0.36
44 167 0.45
45 10 0.03
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (43 bp):
CTACTGCTTAGGGGGTTAAGATCTGGAAATTCAGCCTGTTACC
Found at i:68281867 original size:44 final size:43
Alignment explanation
Indices: 68281541--68282040 Score: 210
Period size: 44 Copynumber: 11.5 Consensus size: 43
68281531 CAGCCCGTTA
* **
68281541 CCCTACTACTTAGGGGTTTGAAG-CCCTTCACCTTCGATCTGTTT
1 CCCTACTGCTTAGGGG-TT-AAGACCCTTCGTCTTCGATCTGTTT
* * * ** * *
68281585 CCTTACTGCTTAGGGGGTTAAGA-TC-TGGAAATTC-AGCCTGTTA
1 CCCTACTGCTTA-GGGGTTAAGACCCTTCG-TCTTCGA-TCTGTTT
* * * *
68281628 CCCTACTACTTAGGGGTTTAAGGCCCATCGTCTTTGATCTGTTT
1 CCCTACTGCTTAGGGG-TTAAGACCCTTCGTCTTCGATCTGTTT
* * ** * *
68281672 CCCTACTGCTTAAGGGGTTAAGA-TC-TGGAAATTC-AGCCTGTTA
1 CCCTACTGCTT-AGGGGTTAAGACCCTTCG-TCTTCGA-TCTGTTT
*
68281715 CCCTACTGCTTAGGGGTTTAA-AGCCCATCGTCTTCGATCTGTTT
1 CCCTACTGCTTAGGGG-TTAAGA-CCCTTCGTCTTCGATCTGTTT
* * * * * * *
68281759 CCTTACTGCTTAGGGGGTTAAGA-TCTACAAT-TT-GGTTTGTTA
1 CCCTACTGCTTA-GGGGTTAAGACCCTTC-GTCTTCGATCTGTTT
**
68281801 CCCTACTGCTTAAGGTTTTAAGACCCTTCGTCTTCGATCTGTTT
1 CCCTACTGCTT-AGGGGTTAAGACCCTTCGTCTTCGATCTGTTT
* * * ** *
68281845 CCCTACTACTTATGGGGTTAAGA-TC-TGGAAATTC-AGCCTGTTGT
1 CCCTACTGCTTA-GGGGTTAAGACCCTTCG-TCTTCGA-TCTGTT-T
* * * *
68281889 -CCTACTGCTTAGGGGTTTAAGGCTCTTCGCCTTCGATCTG-CT
1 CCCTACTGCTTAGGGG-TTAAGACCCTTCGTCTTCGATCTGTTT
* * * * * * *
68281931 CCACTACTGCTTAGGGAGATAAGA-TCTGCAAT-TT-GGTATGTTA
1 CC-CTACTGCTTAGGG-GTTAAGACCCTTC-GTCTTCGATCTGTTT
* *
68281974 CCCTACTGCTTAGGGTTTTAAGACCCTTCGTCTTCGATTTGTTT
1 CCCTACTGCTTAGGG-GTTAAGACCCTTCGTCTTCGATCTGTTT
68282018 CCCTACTGCTTAGAGGGTTAAGA
1 CCCTACTGCTTAG-GGGTTAAGA
68282041 TCTGTAAATT
Statistics
Matches: 331, Mismatches: 85, Indels: 80
0.67 0.17 0.16
Matches are distributed among these distances:
42 71 0.21
43 99 0.30
44 135 0.41
45 26 0.08
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (43 bp):
CCCTACTGCTTAGGGGTTAAGACCCTTCGTCTTCGATCTGTTT
Done.