Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 243 of 444
Found at i:68948070 original size:29 final size:29
Alignment explanation
Indices: 68948028--68948084 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
68948018 TTTATATGCT
68948028 TAGAAACCTTAATGAGTATATTTTTGATA
1 TAGAAACCTTAATGAGTATATTTTTGATA
68948057 TAGAAACCTTAATGAGTATATTTTTGAT
1 TAGAAACCTTAATGAGTATATTTTTGAT
68948085 TGGAATAATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.37, C:0.07, G:0.14, T:0.42
Consensus pattern (29 bp):
TAGAAACCTTAATGAGTATATTTTTGATA
Found at i:68957294 original size:31 final size:31
Alignment explanation
Indices: 68957271--68957344 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
68957261 ATAGTGAATC
**
68957271 CGCACACTTAGTGCTATATATATATTCAGCT
1 CGCACACTTAGTGCTATATATATATGAAGCT
68957302 CGCACACTTAGTGCTATATA-ATCA--AA-CT
1 CGCACACTTAGTGCTATATATAT-ATGAAGCT
68957330 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68957345 GTACAATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
28 17 0.41
29 1 0.02
30 2 0.05
31 21 0.51
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31
Consensus pattern (31 bp):
CGCACACTTAGTGCTATATATATATGAAGCT
Found at i:68957366 original size:30 final size:29
Alignment explanation
Indices: 68957270--68957373 Score: 111
Period size: 28 Copynumber: 3.5 Consensus size: 29
68957260 TATAGTGAAT
* *
68957270 CCGCACACTTAGTGCTATATATATATTCAGC
1 CCGCACACTTAGTGCTATATA-AT-TTAAAC
* *
68957301 TCGCACACTTAGTGCTATATAA-TCAAAC
1 CCGCACACTTAGTGCTATATAATTTAAAC
* * *
68957329 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATAA-TTTAAAC
68957359 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
68957374 CAATCTTGTC
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
28 23 0.37
30 20 0.32
31 20 0.32
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATATAATTTAAAC
Found at i:68965236 original size:28 final size:29
Alignment explanation
Indices: 68965169--68965269 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
68965159 ATAGTGAATC
*
68965169 CGCACACTTAGTGCTATATATATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
68965198 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
68965226 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
68965256 CGCACACTTAGTGC
1 CGCACACTTAGTGC
68965270 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:68978724 original size:29 final size:29
Alignment explanation
Indices: 68978690--68978792 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
68978680 TAATCAGCCG
** *
68978690 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
68978719 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
68978748 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
68978777 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
68978793 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:68984982 original size:40 final size:40
Alignment explanation
Indices: 68984923--68985130 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
68984913 CAATTGAATG
* * * *
68984923 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
68984963 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
68985003 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
68985043 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
68985083 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
68985123 ATATCCGG
1 ATATCCGG
68985131 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:68985061 original size:80 final size:80
Alignment explanation
Indices: 68984925--68985130 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
68984915 ATTGAATGAT
* * ** * * *
68984925 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
68984989 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
68985005 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
68985070 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
68985085 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
68985131 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:68993030 original size:40 final size:40
Alignment explanation
Indices: 68992971--68993176 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 40
68992961 CAATTGAATG
* * * *
68992971 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * *
68993011 ATATCCGGGTTAAGACCCGAAGGCA-TTGTGCTAGTGA-C
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
68993049 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
68993089 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
68993129 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
68993169 ATATCCGG
1 ATATCCGG
68993177 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 24, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
38 23 0.16
39 18 0.13
40 99 0.71
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:68993107 original size:78 final size:80
Alignment explanation
Indices: 68992973--68993176 Score: 243
Period size: 78 Copynumber: 2.6 Consensus size: 80
68992963 ATTGAATGAT
* * ** * * *
68992973 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCA-T
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
*
68993037 TGTGCTAGT-G-ACAC
66 TGTGCAAGTCGTAC-C
* * *
68993051 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
* *
68993116 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGTACC
* *
68993131 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
68993177 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
78 53 0.50
79 9 0.08
80 44 0.41
81 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGTACC
Found at i:68994597 original size:31 final size:31
Alignment explanation
Indices: 68994562--68994625 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
68994552 CATTTACAGT
68994562 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
68994593 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
68994624 AA
1 AA
68994626 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:69004935 original size:40 final size:40
Alignment explanation
Indices: 69004836--69004967 Score: 178
Period size: 40 Copynumber: 3.3 Consensus size: 40
69004826 GGACTAAGAT
* *
69004836 CCGAAGGCATTTGTGCGAGTTACTAATTCTGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
*
69004875 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * *
69004915 CCGAAGGCATTTTTGTGAGTTACTATAA-CCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTC
69004955 CCGAAGGCATTTG
1 CCGAAGGCATTTG
69004968 AACGAGTAGC
Statistics
Matches: 82, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
39 35 0.43
40 45 0.55
41 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:69004989 original size:79 final size:77
Alignment explanation
Indices: 69004817--69005000 Score: 174
Period size: 79 Copynumber: 2.3 Consensus size: 77
69004807 GTGATAAGTG
* * * *
69004817 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCTGGGTTAAGCCCGAAGG
1 ACTATATCCGG-TTAAG-TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGG
**
69004882 CATTGGTGCGAGTT
64 CATTGGAACGAGTT
* * * *
69004896 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTTTGTGAGTTACT-ATAACCGGGCTATGTCCCGAA
1 ACTATATCC-GGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAA
*
69004960 GGCATTTGAACGAG-T
62 GGCATTGGAACGAGTT
*
69004975 AGCTATATCCGGTTAAATTCCGAAGG
1 A-CTATATCCGGTT-AAGTCCGAAGG
69005001 TACGTGATTC
Statistics
Matches: 86, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
78 3 0.03
79 54 0.63
80 29 0.34
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (77 bp):
ACTATATCCGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCA
TTGGAACGAGTT
Found at i:69008283 original size:39 final size:39
Alignment explanation
Indices: 69008202--69008364 Score: 218
Period size: 39 Copynumber: 4.2 Consensus size: 39
69008192 TATGGTAACC
* **
69008202 CGCACAAATGCCTTCGGGACTTAATCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
***
69008242 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATGGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
69008281 CGCACCATTGCCTTCGAGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* * *
69008320 CGCACAATTGCTTTCGGGCTCAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
69008359 CGCACA
1 CGCACA
69008365 TTCATACACA
Statistics
Matches: 107, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 90 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:69012997 original size:30 final size:28
Alignment explanation
Indices: 69012961--69013061 Score: 130
Period size: 28 Copynumber: 3.5 Consensus size: 28
69012951 GACAAGATTG
* * *
69012961 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATATA
*
69012991 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATATA
*
69013019 GCACTAAGTGTGCGAGTTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTAAT-TATATA
69013048 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69013062 GATTCACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
28 26 0.41
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATATA
Found at i:69020909 original size:30 final size:28
Alignment explanation
Indices: 69020873--69020973 Score: 130
Period size: 28 Copynumber: 3.5 Consensus size: 28
69020863 GACAAGATTG
* * *
69020873 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATATA
*
69020903 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATATA
*
69020931 GCACTAAGTGTGCGAGTTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTAAT-TATATA
69020960 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69020974 GATTCACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
28 26 0.41
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATATA
Found at i:69027159 original size:40 final size:40
Alignment explanation
Indices: 69027095--69027283 Score: 208
Period size: 39 Copynumber: 4.8 Consensus size: 40
69027085 GCTACTCGTT
* * * ***
69027095 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
69027135 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* ** *
69027175 CAATTGCCTTCGGG-CTTAGCCCGGATATCA-TGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
69027213 C-ATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
*
69027251 CAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAA
69027284 TTCGCACATT
Statistics
Matches: 133, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
37 28 0.21
38 14 0.11
39 46 0.35
40 45 0.34
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
Found at i:69027244 original size:76 final size:77
Alignment explanation
Indices: 69027139--69027280 Score: 268
Period size: 76 Copynumber: 1.9 Consensus size: 77
69027129 CCCGCACAAA
69027139 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
69027204 ATGCTCGCACAT
66 ATGCTCGCACAT
*
69027216 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
69027280 A
66 A
69027281 CAATTCGCAC
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
76 54 0.84
77 10 0.16
ACGTcount: A:0.21, C:0.32, G:0.22, T:0.25
Consensus pattern (77 bp):
TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
ATGCTCGCACAT
Found at i:69027268 original size:39 final size:39
Alignment explanation
Indices: 69027131--69027291 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
69027121 TATGGTAACC
* *
69027131 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
**
69027171 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA-TGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
69027209 CGCAC-ATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
69027247 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
69027286 CGCACA
1 CGCACA
69027292 TTCATACACA
Statistics
Matches: 112, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
37 28 0.25
38 14 0.12
39 53 0.47
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:69029664 original size:53 final size:53
Alignment explanation
Indices: 69029465--69029687 Score: 162
Period size: 53 Copynumber: 4.2 Consensus size: 53
69029455 ATTAAGGTTT
* * * * * * *
69029465 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTACGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGATAAG-TTCAAAAGGC
* * * * * * *
69029519 AAAGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAA-GC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGAT-AAGTTC-A-AAAGGC
* * * ** * *
69029574 AAAGATCCCCTGTAAGACCATGCCAAGGTAAGGCAATGATGAGTTCAAAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGATAAGTTCAAAAGGC
* * * * *
69029627 AAGGATACCATGTAAGACCATGTCAAGACCTGGCAATGGTAAGTTAAAAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGATAAGTTCAAAAGGC
69029680 AAGG-TACC
1 AAGGATACC
69029688 TGTGTATCCC
Statistics
Matches: 129, Mismatches: 36, Indels: 10
0.74 0.21 0.06
Matches are distributed among these distances:
52 7 0.05
53 48 0.37
54 37 0.29
55 35 0.27
56 2 0.02
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.19
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGATAAGTTCAAAAGGC
Found at i:69032441 original size:40 final size:40
Alignment explanation
Indices: 69032316--69032466 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
69032306 AATTGAATGA
* * * * *
69032316 TATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGACATTC
* * *
69032356 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCT-G-GACATTC
69032397 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GACATTC
* *
69032436 TATCCGGGCTAAGACCCAAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
69032467 ACGTGGTTAT
Statistics
Matches: 91, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 78 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.26, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGACATTC
Found at i:69032480 original size:40 final size:40
Alignment explanation
Indices: 69032353--69032482 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
69032343 ATGCTGGAAA
* * *
69032353 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
69032393 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
69032433 TTCTATCCGGGCTAAGACCCAAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
69032473 TTATATCCGG
1 TTATATCCGG
69032483 TTATATTCCG
Statistics
Matches: 71, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 70 0.99
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:69032481 original size:80 final size:80
Alignment explanation
Indices: 69032315--69032482 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
69032305 AAATTGAATG
* * *
69032315 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCAAAGGCA
69032380 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
69032395 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCAAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCAAAGG
* *
69032458 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
69032475 ATATCCGG
1 ATATCCGG
69032483 TTATATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCAAAGGCA
ATTGTGCTAGTGGCT
Found at i:69036525 original size:24 final size:24
Alignment explanation
Indices: 69036489--69036535 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
69036479 AGCCAAATTC
*
69036489 TAGGAAGATATTATGAAGAGATTT
1 TAGGAAGATATTAAGAAGAGATTT
*
69036513 TAGGAGAGA-ATTAAGGAGAGATT
1 TAGGA-AGATATTAAGAAGAGATT
69036536 GAGGTGTAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 17 0.85
25 3 0.15
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.28
Consensus pattern (24 bp):
TAGGAAGATATTAAGAAGAGATTT
Found at i:69041181 original size:15 final size:15
Alignment explanation
Indices: 69041161--69041190 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
69041151 GGGGGATGGG
69041161 TTTATTATGATTGGA
1 TTTATTATGATTGGA
69041176 TTTATTATGATTGGA
1 TTTATTATGATTGGA
69041191 GGAAGTGTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53
Consensus pattern (15 bp):
TTTATTATGATTGGA
Found at i:69043570 original size:85 final size:85
Alignment explanation
Indices: 69043427--69043607 Score: 308
Period size: 85 Copynumber: 2.1 Consensus size: 85
69043417 GCAACTTTTG
* *
69043427 TTTGAACCCTTTGAGCCTTTCAGGCCAACCTCGGTGAAATTTTATCCCTTGAAACCCAACTTTGA
1 TTTGAACCCTTTGAGCCTTTCAAGCCAACCTCGATGAAATTTTATCCCTTGAAACCCAACTTTGA
*
69043492 GACTATATGGCCTAATTTCA
66 GACTATATAGCCTAATTTCA
* *
69043512 TTTGAACCCTTTGAGTCTTTCAAGCCAACCTTGATGAAATTTTATCCCTTGAAACCCAACTTTGA
1 TTTGAACCCTTTGAGCCTTTCAAGCCAACCTCGATGAAATTTTATCCCTTGAAACCCAACTTTGA
*
69043577 GACTATATAGCCTAATTTTA
66 GACTATATAGCCTAATTTCA
69043597 TTTGAACCCTT
1 TTTGAACCCTT
69043608 GCAATATTTA
Statistics
Matches: 90, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 90 1.00
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.35
Consensus pattern (85 bp):
TTTGAACCCTTTGAGCCTTTCAAGCCAACCTCGATGAAATTTTATCCCTTGAAACCCAACTTTGA
GACTATATAGCCTAATTTCA
Found at i:69051436 original size:30 final size:30
Alignment explanation
Indices: 69051401--69051458 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
69051391 CACGGCCAGG
*
69051401 ACACACGGGCGTGTGG-TCTACCCGTGTGTC
1 ACACACGGGCATGTGGATC-ACCCGTGTGTC
69051431 ACACACGGGCATGTGGATCACCCGTGTG
1 ACACACGGGCATGTGGATCACCCGTGTG
69051459 GAAGTACCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.17, C:0.29, G:0.33, T:0.21
Consensus pattern (30 bp):
ACACACGGGCATGTGGATCACCCGTGTGTC
Found at i:69056417 original size:5 final size:5
Alignment explanation
Indices: 69056407--69056504 Score: 65
Period size: 6 Copynumber: 18.2 Consensus size: 5
69056397 TATGTCTTTC
* * *
69056407 AAAAT AAAAT AATAAT AAATTT GAGAT GAAAAT AAAAAT CAAAAT AAAAAT
1 AAAAT AAAAT AA-AAT AAA-AT AAAAT -AAAAT -AAAAT -AAAAT -AAAAT
*
69056458 AAAAAT AAAAT -AAAG AAAAT AAAAAT AAGAAT -AAAT AAAAT AAAAT
1 -AAAAT AAAAT AAAAT AAAAT -AAAAT AA-AAT AAAAT AAAAT AAAAT
69056504 A
1 A
69056505 GGAGGATTCA
Statistics
Matches: 75, Mismatches: 11, Indels: 14
0.75 0.11 0.14
Matches are distributed among these distances:
4 6 0.08
5 30 0.40
6 39 0.52
ACGTcount: A:0.73, C:0.01, G:0.05, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:69056450 original size:6 final size:6
Alignment explanation
Indices: 69056435--69056492 Score: 71
Period size: 6 Copynumber: 9.3 Consensus size: 6
69056425 ATTTGAGATG
* *
69056435 AAAATA AAAATC AAAATA AAAATA AAAATA AAATAAA GAAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAA-ATA -AAAATA AAAATA
*
69056485 AGAATA AA
1 AAAATA AA
69056493 TAAAATAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
6 37 0.84
7 4 0.09
8 3 0.07
ACGTcount: A:0.79, C:0.02, G:0.03, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:69056458 original size:18 final size:17
Alignment explanation
Indices: 69056407--69056504 Score: 76
Period size: 17 Copynumber: 5.6 Consensus size: 17
69056397 TATGTCTTTC
*
69056407 AAAATAAAATAATAATA
1 AAAATAAAATAAAAATA
** * * *
69056424 AATTTGAGATGAAAATA
1 AAAATAAAATAAAAATA
69056441 AAAATCAAAATAAAAATA
1 AAAAT-AAAATAAAAATA
69056459 AAAATAAAATAAAGAAAATA
1 AAAATAAAAT--A-AAAATA
69056479 AAAATAAGAAT--AAAT-
1 AAAATAA-AATAAAAATA
69056494 AAAATAAAATA
1 AAAATAAAATA
69056505 GGAGGATTCA
Statistics
Matches: 64, Mismatches: 11, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
14 3 0.05
15 7 0.11
16 4 0.06
17 19 0.30
18 14 0.22
19 1 0.02
20 13 0.20
21 3 0.05
ACGTcount: A:0.73, C:0.01, G:0.05, T:0.20
Consensus pattern (17 bp):
AAAATAAAATAAAAATA
Found at i:69056495 original size:10 final size:9
Alignment explanation
Indices: 69056442--69056501 Score: 52
Period size: 9 Copynumber: 6.3 Consensus size: 9
69056432 ATGAAAATAA
69056442 AAATCAAAAT
1 AAAT-AAAAT
69056452 AAA-AATAA-
1 AAATAA-AAT
69056460 AAATAAAAT
1 AAATAAAAT
*
69056469 AAAGAAAAT
1 AAATAAAAT
69056478 AAAAATAAGAAT
1 --AAATAA-AAT
69056490 AAATAAAAT
1 AAATAAAAT
69056499 AAA
1 AAA
69056502 ATAGGAGGAT
Statistics
Matches: 42, Mismatches: 2, Indels: 13
0.74 0.04 0.23
Matches are distributed among these distances:
8 7 0.17
9 18 0.43
10 9 0.21
11 5 0.12
12 3 0.07
ACGTcount: A:0.78, C:0.02, G:0.03, T:0.17
Consensus pattern (9 bp):
AAATAAAAT
Found at i:69056502 original size:26 final size:26
Alignment explanation
Indices: 69056436--69056504 Score: 86
Period size: 26 Copynumber: 2.6 Consensus size: 26
69056426 TTTGAGATGA
69056436 AAATAAAAATCAAAATAAAAATAAAAAT
1 AAAT-AAAAT-AAAATAAAAATAAAAAT
* *
69056464 AAA-ATAAAGAAAATAAAAATAAGAAT
1 AAATA-AAATAAAATAAAAATAAAAAT
69056490 AAATAAAATAAAATA
1 AAATAAAATAAAATA
69056505 GGAGGATTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
26 29 0.81
27 4 0.11
28 3 0.08
ACGTcount: A:0.78, C:0.01, G:0.03, T:0.17
Consensus pattern (26 bp):
AAATAAAATAAAATAAAAATAAAAAT
Found at i:69064803 original size:17 final size:15
Alignment explanation
Indices: 69064777--69064872 Score: 62
Period size: 16 Copynumber: 6.3 Consensus size: 15
69064767 TATGTCTTTC
69064777 AAAATGAAATAATAAT
1 AAAATGAAATAA-AAT
69064793 AAAATTGAAATAAAAT
1 AAAA-TGAAATAAAAT
*
69064809 AAAAATCAAA-AGAAA-
1 -AAAATGAAATA-AAAT
69064824 AATAA--AAATAAAAT
1 AA-AATGAAATAAAAT
69064838 -AAA-GAAAATAAAAAT
1 AAAATG-AAAT-AAAAT
69064853 AAGAAT-AAATAAAAT
1 AA-AATGAAATAAAAT
69064868 AAAAT
1 AAAAT
69064873 AGGAGGATTC
Statistics
Matches: 67, Mismatches: 1, Indels: 26
0.71 0.01 0.28
Matches are distributed among these distances:
12 2 0.03
13 7 0.10
14 10 0.15
15 15 0.22
16 19 0.28
17 14 0.21
ACGTcount: A:0.75, C:0.01, G:0.05, T:0.19
Consensus pattern (15 bp):
AAAATGAAATAAAAT
Found at i:69064810 original size:5 final size:5
Alignment explanation
Indices: 69064777--69064873 Score: 72
Period size: 6 Copynumber: 18.2 Consensus size: 5
69064767 TATGTCTTTC
* * *
69064777 AAAAT GAAAT AATAAT AAAATT GAAAT AAAAT AAAAAT CAAAAGA AAAAT
1 AAAAT AAAAT AA-AAT AAAA-T AAAAT AAAAT -AAAAT -AAAA-T AAAAT
*
69064827 AAAAAT AAAAT -AAAG AAAAT AAAAAT AAGAAT -AAAT AAAAT AAAAT
1 -AAAAT AAAAT AAAAT AAAAT -AAAAT AA-AAT AAAAT AAAAT AAAAT
69064873 A
1 A
69064874 GGAGGATTCA
Statistics
Matches: 74, Mismatches: 9, Indels: 18
0.73 0.09 0.18
Matches are distributed among these distances:
4 6 0.08
5 33 0.45
6 35 0.47
ACGTcount: A:0.75, C:0.01, G:0.05, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:69064814 original size:11 final size:11
Alignment explanation
Indices: 69064777--69064873 Score: 69
Period size: 11 Copynumber: 9.0 Consensus size: 11
69064767 TATGTCTTTC
*
69064777 AAAATGAAATA
1 AAAATAAAATA
* *
69064788 ATAATAAAATT
1 AAAATAAAATA
*
69064799 GAAATAAAATA
1 AAAATAAAATA
*
69064810 AAAATCAAAAGA
1 AAAAT-AAAATA
69064822 AAAATAAAA-A
1 AAAATAAAATA
*
69064832 TAAAAT-AAA-G
1 -AAAATAAAATA
69064842 AAAATAAAAATA
1 AAAAT-AAAATA
*
69064854 AGAAT-AAAT-
1 AAAATAAAATA
69064863 AAAATAAAATA
1 AAAATAAAATA
69064874 GGAGGATTCA
Statistics
Matches: 67, Mismatches: 12, Indels: 14
0.72 0.13 0.15
Matches are distributed among these distances:
9 9 0.13
10 12 0.18
11 32 0.48
12 14 0.21
ACGTcount: A:0.75, C:0.01, G:0.05, T:0.19
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:69064852 original size:26 final size:25
Alignment explanation
Indices: 69064800--69064865 Score: 73
Period size: 26 Copynumber: 2.7 Consensus size: 25
69064790 AATAAAATTG
**
69064800 AAAT-AAAATAAA-AATCAAAAGAA
1 AAATAAAAATAAATAAAGAAAAGAA
*
69064823 AAATAAAAATAAAATAAAGAAAATAA
1 AAATAAAAAT-AAATAAAGAAAAGAA
*
69064849 AAATAAGAATAAATAAA
1 AAATAAAAATAAATAAA
69064866 ATAAAATAGG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
23 4 0.11
24 5 0.14
25 10 0.28
26 17 0.47
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.15
Consensus pattern (25 bp):
AAATAAAAATAAATAAAGAAAAGAA
Found at i:69064873 original size:20 final size:20
Alignment explanation
Indices: 69064783--69064871 Score: 92
Period size: 21 Copynumber: 4.4 Consensus size: 20
69064773 TTTCAAAATG
* *
69064783 AAATAATAATAAAATTGAAATA
1 AAATAAAAATAAAA-T-AAAGA
* *
69064805 AAATAAAAATCAAA-AGA-A
1 AAATAAAAATAAAATAAAGA
69064823 AAATAAAAATAAAATAAAGA
1 AAATAAAAATAAAATAAAGA
*
69064843 AAATAAAAATAAGAATAAATA
1 AAATAAAAATAA-AATAAAGA
69064864 AAATAAAA
1 AAATAAAA
69064872 TAGGAGGATT
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
18 14 0.24
19 4 0.07
20 13 0.22
21 15 0.26
22 12 0.21
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.18
Consensus pattern (20 bp):
AAATAAAAATAAAATAAAGA
Found at i:69072939 original size:22 final size:21
Alignment explanation
Indices: 69072914--69072955 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
69072904 TGAAATTTTA
69072914 ATTAGTATTATAAGATAAAATC
1 ATTAGTATTATAAGA-AAAATC
* *
69072936 ATTATTATTATTAGAAAAAT
1 ATTAGTATTATAAGAAAAAT
69072956 AATACTGTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.50, C:0.02, G:0.07, T:0.40
Consensus pattern (21 bp):
ATTAGTATTATAAGAAAAATC
Found at i:69073060 original size:3 final size:3
Alignment explanation
Indices: 69073052--69073082 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
69073042 TATTTATAAA
*
69073052 ATT ATT ATT ATT ATT ATA ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
69073083 GATAGGAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:69073097 original size:2 final size:2
Alignment explanation
Indices: 69073090--69073124 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
69073080 TTAGATAGGA
69073090 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
69073125 AAAGTATTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:69076008 original size:42 final size:44
Alignment explanation
Indices: 69075939--69076042 Score: 108
Period size: 42 Copynumber: 2.4 Consensus size: 44
69075929 CATTGACTTA
*
69075939 TGATTTACGTGTAAGACCATGCCTGGGACA-TCGACATCG-TATT
1 TGATTTACGTGTAAGACCATGCATGGGACAGT-GACATCGATATT
* * * *
69075982 TGATTT-CGTGTTAGACCCTGTATGGGACAGTGGCATCGATATT
1 TGATTTACGTGTAAGACCATGCATGGGACAGTGACATCGATATT
**
69076025 TGA-TTACAAGTAAGACCA
1 TGATTTACGTGTAAGACCA
69076043 CATCTGGGAC
Statistics
Matches: 49, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
42 27 0.55
43 22 0.45
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (44 bp):
TGATTTACGTGTAAGACCATGCATGGGACAGTGACATCGATATT
Found at i:69083643 original size:108 final size:110
Alignment explanation
Indices: 69083496--69083724 Score: 306
Period size: 108 Copynumber: 2.1 Consensus size: 110
69083486 CACGGCTAAG
* *
69083496 ACACACGCCCTTGTCTTTCCTCGTGTGCTCAATTTTGAGCATTCTATTTTGC-ATTTAGGTGCAG
1 ACACACGCCCTTGTCTTGCCTCGTGTGCTCAATTCTGAGCATTCTATTTTGCAATTTAGGTGCAG
* * *
69083560 GGGACACACGGTC-GAATCACACA-CCCAT-GGGCTGACCGTGTGTC
66 GGGACACACAGCCAGAA-CACA-AGCCCATGGGGCTAACCGTGTGTC
*
69083604 ACACACGCCTTTGTCTCTGCC-CGTGTGCTCAATTCTGAGCATTCTATTTTGCAAAAAATTTAGG
1 ACACACGCCCTTGTCT-TGCCTCGTGTGCTCAATTCTGAGCATTCTATTTTGC----AATTTAGG
69083668 TGCAGGGGACACACAGCCAGAACACAAGCCCATGGGGCTAACCGTGTGTC
61 TGCAGGGGACACACAGCCAGAACACAAGCCCATGGGGCTAACCGTGTGTC
69083718 ACACACG
1 ACACACG
69083725 GCCTAGAAAC
Statistics
Matches: 106, Mismatches: 6, Indels: 12
0.85 0.05 0.10
Matches are distributed among these distances:
108 45 0.42
109 3 0.03
112 1 0.01
113 32 0.30
114 25 0.24
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (110 bp):
ACACACGCCCTTGTCTTGCCTCGTGTGCTCAATTCTGAGCATTCTATTTTGCAATTTAGGTGCAG
GGGACACACAGCCAGAACACAAGCCCATGGGGCTAACCGTGTGTC
Found at i:69084896 original size:68 final size:68
Alignment explanation
Indices: 69084787--69084922 Score: 227
Period size: 68 Copynumber: 2.0 Consensus size: 68
69084777 CTCACATCTC
* *
69084787 ATAAATCACAATTTGTGTGAATAAAACATACTATATTATAACTCAATTTGGCCCGAAATCCAATT
1 ATAAATCACAATTTGTGTGAATAAAACATACTATATCATAACTCAATTTGGCCCGAAAGCCAATT
69084852 ACA
66 ACA
* * *
69084855 ATAAATCACAATTTGTGTGAATAAAATATGCTATATCATAACTCAATTTGGCCTGAAAGCCAATT
1 ATAAATCACAATTTGTGTGAATAAAACATACTATATCATAACTCAATTTGGCCCGAAAGCCAATT
69084920 ACA
66 ACA
69084923 TGATCACCAA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (68 bp):
ATAAATCACAATTTGTGTGAATAAAACATACTATATCATAACTCAATTTGGCCCGAAAGCCAATT
ACA
Found at i:69086723 original size:29 final size:29
Alignment explanation
Indices: 69086684--69086763 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
69086674 CTTAATAATC
*
69086684 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
69086714 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
69086743 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
69086764 TCTCTCAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:69091298 original size:19 final size:20
Alignment explanation
Indices: 69091274--69091311 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
69091264 GGTACCACCA
69091274 AAACAT-ATATCAT-ATCTTT
1 AAACATCAT-TCATCATCTTT
69091293 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
69091312 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:69091651 original size:93 final size:93
Alignment explanation
Indices: 69091541--69091711 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
69091531 GCCCCTAAGT
*
69091541 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
69091606 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
69091634 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
69091699 CGAGTTCGGATGC
66 CGAGTTCGGATGC
69091712 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69091708 original size:46 final size:46
Alignment explanation
Indices: 69091536--69091708 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
69091526 AACCCGCCCC
* * *
69091536 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
69091582 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
69091630 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
69091675 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69091709 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:69099215 original size:93 final size:93
Alignment explanation
Indices: 69099105--69099275 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
69099095 GCCCCTAAGT
* *
69099105 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
69099170 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
69099198 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
69099263 CGAGTTCGGATGC
66 CGAGTTCGGATGC
69099276 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69099272 original size:46 final size:46
Alignment explanation
Indices: 69099100--69099272 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
69099090 AACCCGCCCC
* * * *
69099100 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
69099146 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
69099194 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
69099239 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69099273 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:69101740 original size:35 final size:35
Alignment explanation
Indices: 69101675--69101854 Score: 189
Period size: 35 Copynumber: 5.1 Consensus size: 35
69101665 TACTTACTTG
* * * *
69101675 TATGGCCAAATACACATGGTTCATTATATCATCACA
1 TATGGCCGAATATACA-AGTTCAATATATCATCACA
* *
69101711 TATGGCCGAATATACAAGTACAATATATCATCATA
1 TATGGCCGAATATACAAGTTCAATATATCATCACA
* * *
69101746 TATGACCGAATATACAAGTTCAATAAAACATCACA
1 TATGGCCGAATATACAAGTTCAATATATCATCACA
* * * * *
69101781 TATAGTCGAATATTCAAGTTTAATATAACATCACA
1 TATGGCCGAATATACAAGTTCAATATATCATCACA
* * **
69101816 TGTGGCCAAATATACAAGTTCAATGCATCATCACA
1 TATGGCCGAATATACAAGTTCAATATATCATCACA
69101851 TATG
1 TATG
69101855 TACATACCTA
Statistics
Matches: 117, Mismatches: 27, Indels: 1
0.81 0.19 0.01
Matches are distributed among these distances:
35 103 0.88
36 14 0.12
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.29
Consensus pattern (35 bp):
TATGGCCGAATATACAAGTTCAATATATCATCACA
Found at i:69107567 original size:12 final size:12
Alignment explanation
Indices: 69107530--69107568 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
69107520 TACACGCCCA
*
69107530 TGTGCCAAGCCG
1 TGTGCCAGGCCG
69107542 TGTGCCAGGCCG
1 TGTGCCAGGCCG
* *
69107554 TGTGCTAGGTCG
1 TGTGCCAGGCCG
69107566 TGT
1 TGT
69107569 AACAGCCTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.10, C:0.26, G:0.38, T:0.26
Consensus pattern (12 bp):
TGTGCCAGGCCG
Found at i:69118466 original size:40 final size:40
Alignment explanation
Indices: 69118421--69118588 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
69118411 CGGAATACAA
69118421 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
69118461 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
69118501 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
69118541 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
69118581 CCGGATAT
1 CCGGATAT
69118589 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:69118561 original size:80 final size:80
Alignment explanation
Indices: 69118421--69118588 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
69118411 CGGAATACAA
* *
69118421 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
69118486 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
69118501 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
69118564 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
69118581 CCGGATAT
1 CCGGATAT
69118589 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:69121390 original size:14 final size:14
Alignment explanation
Indices: 69121373--69121399 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
69121363 ATTTTTATGG
69121373 AATGATTTCGTGAA
1 AATGATTTCGTGAA
69121387 AATGATTTCGTGA
1 AATGATTTCGTGA
69121400 CAATTTCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.37
Consensus pattern (14 bp):
AATGATTTCGTGAA
Found at i:69122534 original size:42 final size:41
Alignment explanation
Indices: 69122475--69122625 Score: 171
Period size: 42 Copynumber: 3.6 Consensus size: 41
69122465 GAGACTATGC
* *
69122475 GTAAGACCATATCTGGGATATGGCATCAATATGGGACTTCGA
1 GTAAGACCATATCTGGGATATGGCATCGATATGAGA-TTCGA
* * *
69122517 GTAAGACCATAACTGGGATATGGCATCGATGTGAGATTTCGT
1 GTAAGACCATATCTGGGATATGGCATCGATATGAGA-TTCGA
*
69122559 GTAAGACCATAGT-TGGGCTATTGGCATCGATATGAGATTAC-A
1 GTAAGACCATA-TCTGGGATA-TGGCATCGATATGAGATT-CGA
*
69122601 TGTAAGACCATATCTAGGATATGGC
1 -GTAAGACCATATCTGGGATATGGC
69122626 GTTGGTATGG
Statistics
Matches: 92, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
42 60 0.65
43 32 0.35
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (41 bp):
GTAAGACCATATCTGGGATATGGCATCGATATGAGATTCGA
Found at i:69125331 original size:25 final size:25
Alignment explanation
Indices: 69125294--69125342 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
69125284 AGTTCAAGCA
*
69125294 AGCCATATCAGGAAGCTCA-AAAGG
1 AGCCATACCAGGAAGCTCAGAAAGG
69125318 AGCCTATACCAGGAAGCTCAGAAAG
1 AGCC-ATACCAGGAAGCTCAGAAAG
69125343 AGCTGCATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.18
25 14 0.64
26 4 0.18
ACGTcount: A:0.41, C:0.22, G:0.24, T:0.12
Consensus pattern (25 bp):
AGCCATACCAGGAAGCTCAGAAAGG
Found at i:69126080 original size:40 final size:40
Alignment explanation
Indices: 69126017--69126112 Score: 93
Period size: 40 Copynumber: 2.4 Consensus size: 40
69126007 GCTTCAGTGG
* *** * *
69126017 CATTAGCAGCGCTTTTTTAAAAACATCGCAATAGATCGAT
1 CATTAGCGGCGCTTTTAGGAAAACACCGCAATAGATCGAC
* * * *
69126057 CATTAGCGGCGTTTTTAGGAAAACCCCGCCATAGGTCGAC
1 CATTAGCGGCGCTTTTAGGAAAACACCGCAATAGATCGAC
*
69126097 CATTAGTGGCGCTTTT
1 CATTAGCGGCGCTTTT
69126113 CTGAAAACTC
Statistics
Matches: 44, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (40 bp):
CATTAGCGGCGCTTTTAGGAAAACACCGCAATAGATCGAC
Found at i:69126991 original size:21 final size:21
Alignment explanation
Indices: 69126945--69126997 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
69126935 TATAAAACTT
* * *
69126945 AAAACTATTAACCCTAAATCT
1 AAAACCATAAACCCTAAATCC
* *
69126966 TAAACCCTAAACCCTAAATCC
1 AAAACCATAAACCCTAAATCC
69126987 AAAACCATAAA
1 AAAACCATAAA
69126998 ACCTTAAACT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (21 bp):
AAAACCATAAACCCTAAATCC
Found at i:69127359 original size:3 final size:3
Alignment explanation
Indices: 69127351--69127396 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
69127341 TTAATAGTAC
69127351 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
69127397 AAAAGAGAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:69129918 original size:27 final size:27
Alignment explanation
Indices: 69129888--69130127 Score: 243
Period size: 27 Copynumber: 8.9 Consensus size: 27
69129878 ATTACCAAAG
* *
69129888 TACCATCGATTTATAGAACTACTATTT
1 TACCCTCGATTTATAGAATTACTATTT
* * *
69129915 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTATTT
* *
69129942 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACTATTT
* *
69129969 TACCCTCGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTATAGAATTACT-ATTT
* *
69129996 TACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACTATTT
* * *
69130023 TACTCTTGATTTATAGAATTA-TCGTTT
1 TACCCTCGATTTATAGAATTACT-ATTT
* * *
69130050 TACCCTCGATTTAAAAAATTA-TCGTTT
1 TACCCTCGATTTATAGAATTACT-ATTT
* * *
69130077 TACCCTCAATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACTATTT
*
69130104 TACCCTCGATTTATAAAATTACTA
1 TACCCTCGATTTATAGAATTACTA
69130128 CAATACCCTT
Statistics
Matches: 173, Mismatches: 36, Indels: 8
0.80 0.17 0.04
Matches are distributed among these distances:
27 173 1.00
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTATTT
Found at i:69129997 original size:81 final size:81
Alignment explanation
Indices: 69129863--69130125 Score: 321
Period size: 81 Copynumber: 3.2 Consensus size: 81
69129853 TACAGAAATG
* * *** * * * * **
69129863 CCCTCGACTTGTAAAATTACCAAAGTACCATCGATTTATAGAACTA-CTATTTTACCCTTGATTT
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTAAAGAATTATC-GTTTTACCCTCAATTT
**
69129927 ACAGAATTACTGTTTTA
65 ACAGAATTACCATTTTA
*
69129944 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCAATTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTAAAGAATTATCGTTTTACCCTCAATTTA
*
69130009 TAGAATTACCATTTTA
66 CAGAATTACCATTTTA
* * * * * *
69130025 CTCTTGATTTATAGAATTATCGTTTTACCCTCGATTTAAAAAATTATCGTTTTACCCTCAATTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTAAAGAATTATCGTTTTACCCTCAATTTA
69130090 CAGAATTACCATTTTA
66 CAGAATTACCATTTTA
69130106 CCCTCGATTTATAAAATTAC
1 CCCTCGATTTATAAAATTAC
69130126 TACAATACCC
Statistics
Matches: 155, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
81 154 0.99
82 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.40
Consensus pattern (81 bp):
CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTAAAGAATTATCGTTTTACCCTCAATTTA
CAGAATTACCATTTTA
Found at i:69130134 original size:27 final size:27
Alignment explanation
Indices: 69130050--69130216 Score: 113
Period size: 27 Copynumber: 6.2 Consensus size: 27
69130040 ATTATCGTTT
* * ****
69130050 TACCCTCGATTTAAAAAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCAAAA
* * * ***
69130077 TACCCTCAATTTACAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCAAAA
* *
69130104 TACCCTCGATTTATAAAATTACTACAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
69130131 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
69130158 TACCCTCGA-TTAGTAAAATTACCAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAA
** * *
69130185 TACCC-CTGGCTTGTAAGATTACCAAAA
1 TACCCTC-GATTTATAAAATTACCAAAA
69130212 TACCC
1 TACCC
69130217 CTGTTTTGTG
Statistics
Matches: 114, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
26 4 0.04
27 108 0.95
28 2 0.02
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.32
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:69130153 original size:54 final size:54
Alignment explanation
Indices: 69129888--69130181 Score: 320
Period size: 54 Copynumber: 5.4 Consensus size: 54
69129878 ATTACCAAAG
* * * * *
69129888 TACCATCGATTTATAGAACTACTATTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTTGATTTACAGAATTACCGTTT
* *
69129942 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTTGATTTACAGAATTACCGTTT
* * * * *
69129996 TACCCTCAATTTATAGAATTACCATTTTACTCTTGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTTGATTTACAGAATTACCGTTT
* * * ** *
69130050 TACCCTCGATTTAAAAAATTATCGTTTTACCCTCAATTTACAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTTGATTTACAGAATTACCGTTT
* *** * * ****
69130104 TACCCTCGATTTATAAAATTACTACAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCATTTTACCCTTGATTTACAGAATTACCGTTT
69130158 TACCCTCGA-TTAGTAAAATTACCA
1 TACCCTCGATTTA-TAAAATTACCA
69130182 AAATACCCCT
Statistics
Matches: 201, Mismatches: 38, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
53 3 0.01
54 198 0.99
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACCATTTTACCCTTGATTTACAGAATTACCGTTT
Found at i:69130164 original size:81 final size:81
Alignment explanation
Indices: 69129912--69130151 Score: 304
Period size: 81 Copynumber: 3.0 Consensus size: 81
69129902 AGAACTACTA
** ** * *
69129912 TTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTCG
1 TTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACTACTTTACCCTCG
*
69129977 ATTTACAGAATTATCG
66 ATTTACAAAATTATCG
* * * *
69129993 TTTTACCCTCAATTTATAGAATTACCATTTTACTCTTGATTTATAGAATTA-T-CGTTTTACCCT
1 TTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACTAC--TTTACCCT
*
69130056 CGATTTAAAAAATTATCG
64 CGATTTACAAAATTATCG
** *
69130074 TTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACTACAATACCCTTG
1 TTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACTACTTTACCCTCG
*
69130139 GTTTACAAAATTA
66 ATTTACAAAATTA
69130152 CCAAAATACC
Statistics
Matches: 134, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
81 132 0.99
82 1 0.01
83 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.42
Consensus pattern (81 bp):
TTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACTACTTTACCCTCG
ATTTACAAAATTATCG
Found at i:69130187 original size:54 final size:54
Alignment explanation
Indices: 69130086--69130216 Score: 147
Period size: 54 Copynumber: 2.4 Consensus size: 54
69130076 TTACCCTCAA
* *** * * *
69130086 TTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACTACAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCCTGG
69130140 TTTACAAAATTACCAAAATACCCTCGA-TTAGTAAAATTACCAAAATACCCCTGG
1 TTTACAAAATTACCAAAATACCCTCGATTTA-TAAAATTACCAAAATACCCCTGG
* ** *
69130194 CTTGTAAGATTACCAAAATACCC
1 TTTACAAAATTACCAAAATACCC
69130217 CTGTTTTGTG
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 3 0.05
54 62 0.95
ACGTcount: A:0.38, C:0.24, G:0.08, T:0.31
Consensus pattern (54 bp):
TTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCCTGG
Found at i:69130225 original size:27 final size:27
Alignment explanation
Indices: 69130106--69130299 Score: 117
Period size: 27 Copynumber: 7.2 Consensus size: 27
69130096 TACCATTTTA
* * *
69130106 CCCTCGATTTATAAAATTACTACAATAC
1 CCCT-GATTTGTAAAATTACCAAAATAC
* * **
69130134 CCTTGGTTTACAAAATTACCAAAATA-
1 CCCTGATTTGTAAAATTACCAAAATAC
*
69130160 CCCTCGATTAGTAAAATTACCAAAATAC
1 CCCT-GATTTGTAAAATTACCAAAATAC
** *
69130188 CCCTGGCTTGTAAGATTACCAAAATAC
1 CCCTGATTTGTAAAATTACCAAAATAC
* * * *
69130215 CCCTGTTTTGTGAAATTATCGAAATA-
1 CCCTGATTTGTAAAATTACCAAAATAC
* * * *
69130241 CTCTCAATTTGTAAAA-TATCGAAATAC
1 CCCT-GATTTGTAAAATTACCAAAATAC
** * *
69130268 CCCTG-TAGGGTAGAATTACCGAAATAC
1 CCCTGAT-TTGTAAAATTACCAAAATAC
69130295 CCCTG
1 CCCTG
69130300 TAGGGTAGAA
Statistics
Matches: 130, Mismatches: 30, Indels: 13
0.75 0.17 0.08
Matches are distributed among these distances:
25 1 0.01
26 21 0.16
27 101 0.78
28 7 0.05
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (27 bp):
CCCTGATTTGTAAAATTACCAAAATAC
Found at i:69130300 original size:27 final size:27
Alignment explanation
Indices: 69130260--69130477 Score: 283
Period size: 27 Copynumber: 8.0 Consensus size: 27
69130250 TGTAAAATAT
69130260 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
69130287 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
69130314 TGAAATAACCCTGTAGCGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * * *
69130341 CAAAATACTCCTATAGGGTAAAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
69130368 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
** * *
69130395 CGAAATACCTTTGTAGGGTAAAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
69130422 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
69130449 CGAGATACCCTTGTGGGGTAAAAATTAC
1 CGAAATACCCCTGTAGGGT-AGAATTAC
69130477 C
1 C
69130478 ATTTTGCCCC
Statistics
Matches: 162, Mismatches: 28, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
27 154 0.95
28 8 0.05
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:69130713 original size:25 final size:25
Alignment explanation
Indices: 69130680--69130774 Score: 129
Period size: 25 Copynumber: 3.8 Consensus size: 25
69130670 AGGAAGTGCT
*
69130680 AAAAGGGCTATGCCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
69130705 AAAAGGGCTTTGCCCCAGTTTACCGA
1 AAAAGGGCTTTGCCCCAGTTTACC-A
* * *
69130731 AAAA-GGCTTTGCCGCAGTTCATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
69130755 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
69130775 ATTAAAAGAG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
24 5 0.08
25 52 0.84
26 5 0.08
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:69130799 original size:50 final size:51
Alignment explanation
Indices: 69130678--69130799 Score: 135
Period size: 50 Copynumber: 2.5 Consensus size: 51
69130668 GGAGGAAGTG
*
69130678 CTAAAAG-GGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTAC
1 CTAAAAGAGGCTATGCCCCAGTTCACCAAAAAGGGCTTTGCCCCAGTTTAC
* * * * *
69130728 CGAAAA-AGGCTTTGCCGCAGTTCATCAAAAAGGGCTTTGCCCTAG-TTA-
1 CTAAAAGAGGCTATGCCCCAGTTCACCAAAAAGGGCTTTGCCCCAGTTTAC
* *
69130776 TTAAAAGAGGCTAGGCCTCCAGTT
1 CTAAAAGAGGCTATGCC-CCAGTT
69130800 ATATGATAAA
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
48 4 0.07
49 11 0.19
50 43 0.74
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.25
Consensus pattern (51 bp):
CTAAAAGAGGCTATGCCCCAGTTCACCAAAAAGGGCTTTGCCCCAGTTTAC
Found at i:69131034 original size:30 final size:30
Alignment explanation
Indices: 69130995--69131067 Score: 119
Period size: 31 Copynumber: 2.4 Consensus size: 30
69130985 CGCTTACAAT
69130995 AAAGGCTTCGGCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCAGTGATATGATTTATGA
* *
69131025 AAAGCCTTCGACCCAGTGATATGATTTATGA
1 AAAGGCTTCG-GCCAGTGATATGATTTATGA
69131056 AAAGGCTTCGGC
1 AAAGGCTTCGGC
69131068 GAGACTGAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
30 10 0.26
31 28 0.74
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (30 bp):
AAAGGCTTCGGCCAGTGATATGATTTATGA
Found at i:69134571 original size:40 final size:40
Alignment explanation
Indices: 69134509--69134686 Score: 236
Period size: 40 Copynumber: 4.5 Consensus size: 40
69134499 AAACCAAGTA
* * * *
69134509 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
69134548 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69134588 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
69134628 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
69134668 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
69134687 TTATCATCCG
Statistics
Matches: 124, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
39 14 0.11
40 110 0.89
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:69136597 original size:27 final size:27
Alignment explanation
Indices: 69136578--69136768 Score: 274
Period size: 27 Copynumber: 7.1 Consensus size: 27
69136568 ATTACCAAAG
* *
69136578 TACCATCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * *
69136605 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
69136632 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
69136659 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
69136686 TACCATCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
69136713 TACCCTGGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
69136740 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
69136767 TA
1 TA
69136769 ATCTCAATTT
Statistics
Matches: 146, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.29, C:0.20, G:0.10, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:69136653 original size:81 final size:81
Alignment explanation
Indices: 69136578--69136790 Score: 300
Period size: 81 Copynumber: 2.6 Consensus size: 81
69136568 ATTACCAAAG
* * * * *
69136578 TACCATCGATTTATAGAATTACTGTTTTACCCTTGATTTACAAAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
69136643 TATAGAATTACCGTTT
66 TATAGAATTACCGTTT
* * * * *
69136659 TACCCTCGATTTACAGAATTACCGTTTTACCATCGATTTATAGAATTACCATTTTACCCTGGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
69136724 TATAGAATTACCGTTT
66 TATAGAATTACCGTTT
* ** *
69136740 TACCCTCGATTTACAAAATTACCGTTTTAATCTCAATTTACAAAATTACTA
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTA
69136791 CAATATCCTT
Statistics
Matches: 114, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 114 1.00
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
TATAGAATTACCGTTT
Found at i:69136814 original size:81 final size:81
Alignment explanation
Indices: 69136578--69136815 Score: 203
Period size: 81 Copynumber: 2.9 Consensus size: 81
69136568 ATTACCAAAG
* * * * * ** *** * *
69136578 TACCATCGATTTATAGAATTACTGTTTTACCCTTGATTTACAAAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCGTTTTACCATCAATTTACAAAATTACCAATATACCCTAGATT
* *
69136643 TATAGAATTACCGTTT
66 TACAAAATTACCGTTT
* * * * * * *
69136659 TACCCTCGATTTACAGAATTACCGTTTTACCATCGATTTATAGAATTACCATTTTACCCTGGATT
1 TACCCTCGATTTACAAAATTACCGTTTTACCATCAATTTACAAAATTACCAATATACCCTAGATT
* *
69136724 TATAGAATTACCGTTT
66 TACAAAATTACCGTTT
* *
69136740 TACCCTCGATTTACAAAATTACCGTTTTAATC-TCAATTTACAAAATTACTACAATAT-CCTTAG
1 TACCCTCGATTTACAAAATTACCGTTTT-ACCATCAATTTACAAAATTAC--CAATATACCCTAG
69136803 -TTTACAAAATTAC
63 ATTTACAAAATTAC
69136816 TACAATATCC
Statistics
Matches: 133, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
81 123 0.92
82 6 0.05
83 4 0.03
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCATCAATTTACAAAATTACCAATATACCCTAGATT
TACAAAATTACCGTTT
Found at i:69136849 original size:27 final size:27
Alignment explanation
Indices: 69136776--69136842 Score: 134
Period size: 27 Copynumber: 2.5 Consensus size: 27
69136766 TTAATCTCAA
69136776 TTTACAAAATTACTACAATATCCTTAG
1 TTTACAAAATTACTACAATATCCTTAG
69136803 TTTACAAAATTACTACAATATCCTTAG
1 TTTACAAAATTACTACAATATCCTTAG
69136830 TTTACAAAATTAC
1 TTTACAAAATTAC
69136843 CAAAATACCC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.42, C:0.18, G:0.03, T:0.37
Consensus pattern (27 bp):
TTTACAAAATTACTACAATATCCTTAG
Found at i:69136915 original size:27 final size:26
Alignment explanation
Indices: 69136836--69136989 Score: 107
Period size: 27 Copynumber: 5.8 Consensus size: 26
69136826 TTAGTTTACA
**
69136836 AAATTACCAAAATA-CCCTCGATCAGT
1 AAATTACCAAAATACCCCT-GATTTGT
**
69136862 AAAATTACCAAAATACCCCTGGCTTGT
1 -AAATTACCAAAATACCCCTGATTTGT
69136889 AAGATTACCAAAATACCCCTGATTTGT
1 AA-ATTACCAAAATACCCCTGATTTGT
* * *
69136916 GAAATTATCGAAATA-CTCTCGATTTGT
1 -AAATTACCAAAATACCCCT-GATTTGT
* * * **
69136943 AAAATATCGAAATACCCCTG-TAGGGT
1 AAATTACCAAAATACCCCTGAT-TTGT
*
69136969 AGAATTACCGAAATACCCCTG
1 A-AATTACCAAAATACCCCTG
69136990 TAGGGTAGAA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
25 1 0.01
26 22 0.21
27 76 0.72
28 6 0.06
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.27
Consensus pattern (26 bp):
AAATTACCAAAATACCCCTGATTTGT
Found at i:69136990 original size:27 final size:27
Alignment explanation
Indices: 69136950--69137167 Score: 292
Period size: 27 Copynumber: 8.0 Consensus size: 27
69136940 TGTAAAATAT
69136950 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
69136977 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
69137004 TGAAATAACCTTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
69137031 CGAAATACTCCTATAGGGTAAAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
69137058 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
** * *
69137085 CGAAATACCTTTGTAGGGTAAAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
69137112 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
69137139 CGAGATACCCTTGTGGGGTAAAAATTAC
1 CGAAATACCCCTGTAGGGT-AGAATTAC
69137167 C
1 C
69137168 ATTTTGCCCC
Statistics
Matches: 164, Mismatches: 26, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
27 156 0.95
28 8 0.05
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:69137403 original size:25 final size:25
Alignment explanation
Indices: 69137370--69137464 Score: 147
Period size: 25 Copynumber: 3.8 Consensus size: 25
69137360 AGGAAGTGCT
*
69137370 AAAAGGGCTATGCCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
69137395 AAAAGGGCTTTGCCCCAGTTTACCGA
1 AAAAGGGCTTTGCCCCAGTTTACC-A
* *
69137421 AAAA-GGCTTTGCCGCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
69137445 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
69137465 ATTAAAAGAG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
24 5 0.08
25 54 0.84
26 5 0.08
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:69137477 original size:24 final size:24
Alignment explanation
Indices: 69137370--69137477 Score: 119
Period size: 25 Copynumber: 4.4 Consensus size: 24
69137360 AGGAAGTGCT
* * *
69137370 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAAGGCTTTGCCCCAGTTTATC
*
69137394 AAAAAGGGCTTTGCCCCAGTTTACC
1 AAAAA-GGCTTTGCCCCAGTTTATC
*
69137419 GAAAAAGGCTTTGCCGCAGTTTATC
1 -AAAAAGGCTTTGCCCCAGTTTATC
*
69137444 AAAAAGGGCTTTGCCCCAG-TTATT
1 AAAAA-GGCTTTGCCCCAGTTTATC
69137468 AAAAGAGGCT
1 AAAA-AGGCT
69137478 AGGCCTCCAG
Statistics
Matches: 74, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
24 21 0.28
25 48 0.65
26 5 0.07
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (24 bp):
AAAAAGGCTTTGCCCCAGTTTATC
Found at i:69137489 original size:50 final size:51
Alignment explanation
Indices: 69137368--69137489 Score: 153
Period size: 50 Copynumber: 2.5 Consensus size: 51
69137358 GGAGGAAGTG
69137368 CTAAAAG-GGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTAC
1 CTAAAAGAGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTAC
* * * *
69137418 CGAAAA-AGGCTTTGCCGCAGTTTATCAAAAAGGGCTTTGCCCCAG-TTA-
1 CTAAAAGAGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTAC
* *
69137466 TTAAAAGAGGCTAGGCCTCCAGTT
1 CTAAAAGAGGCTATGCC-CCAGTT
69137490 ATATGATAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
48 4 0.07
49 11 0.18
50 45 0.75
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.25
Consensus pattern (51 bp):
CTAAAAGAGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTAC
Found at i:69137734 original size:31 final size:31
Alignment explanation
Indices: 69137685--69137767 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
69137675 CGCTTACAGT
*
69137685 AAAGGCTTTGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
69137715 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
69137746 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
69137768 TCGAGACTGA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 15 0.29
31 36 0.71
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:69139637 original size:24 final size:24
Alignment explanation
Indices: 69139610--69139656 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
69139600 AATATTATTG
* *
69139610 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCATTTTATCAC
69139634 AAATATTATCGTCCATTTTATCA
1 AAATATTATCGTCCATTTTATCA
69139657 TTTAAGTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.30, C:0.21, G:0.06, T:0.43
Consensus pattern (24 bp):
AAATATTATCGTCCATTTTATCAC
Found at i:69139893 original size:15 final size:13
Alignment explanation
Indices: 69139875--69140006 Score: 53
Period size: 14 Copynumber: 10.0 Consensus size: 13
69139865 TCTTATTTTA
69139875 ATTAATATAATTT
1 ATTAATATAATTT
*
69139888 GGATTAAT-TTATTT
1 --ATTAATATAATTT
*
69139902 A--AATATTATTT
1 ATTAATATAATTT
69139913 AATTAATATAA--T
1 -ATTAATATAATTT
69139925 ATTAATATAATTT
1 ATTAATATAATTT
* *
69139938 GGATTAAT-TTATCT
1 --ATTAATATAATTT
* * *
69139952 A-AAATATTATTAA
1 ATTAATATAATT-T
69139965 ATTAATATAATTTTT
1 ATTAATATAA--TTT
*
69139980 ATAAATATAATTT
1 ATTAATATAATTT
*
69139993 AATTAAAATAATTT
1 -ATTAATATAATTT
69140007 TTTCCATGTG
Statistics
Matches: 90, Mismatches: 13, Indels: 29
0.68 0.10 0.22
Matches are distributed among these distances:
10 3 0.03
11 19 0.21
12 8 0.09
13 5 0.06
14 32 0.36
15 21 0.23
16 2 0.02
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (13 bp):
ATTAATATAATTT
Found at i:69139927 original size:19 final size:19
Alignment explanation
Indices: 69139871--69139928 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 19
69139861 TCAATCTTAT
69139871 TTTAATTAATATAAT-TTGGA
1 TTTAATTAATATAATATT--A
* *
69139891 -TTAATTTATTTAAATATTA
1 TTTAATTAATAT-AATATTA
69139910 TTTAATTAATATAATATTA
1 TTTAATTAATATAATATTA
69139929 ATATAATTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
19 17 0.55
20 12 0.39
21 2 0.06
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (19 bp):
TTTAATTAATATAATATTA
Found at i:69139931 original size:50 final size:51
Alignment explanation
Indices: 69139875--69139975 Score: 177
Period size: 50 Copynumber: 2.0 Consensus size: 51
69139865 TCTTATTTTA
* *
69139875 ATTAATATAATTTGGATTAATTTAT-TTAAATATTATTTAATTAATATAAT
1 ATTAATATAATTTGGATTAATTTATCTAAAATATTATTAAATTAATATAAT
69139925 ATTAATATAATTTGGATTAATTTATCTAAAATATTATTAAATTAATATAAT
1 ATTAATATAATTTGGATTAATTTATCTAAAATATTATTAAATTAATATAAT
69139976 TTTTATAAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
50 25 0.52
51 23 0.48
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.50
Consensus pattern (51 bp):
ATTAATATAATTTGGATTAATTTATCTAAAATATTATTAAATTAATATAAT
Found at i:69139996 original size:29 final size:29
Alignment explanation
Indices: 69139953--69140008 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
69139943 AATTTATCTA
* *
69139953 AAATATTATTAAATTAATATAATTTTTAT
1 AAATATAATTAAATTAAAATAATTTTTAT
*
69139982 AAATATAATTTAATTAAAATAATTTTT
1 AAATATAATTAAATTAAAATAATTTTT
69140009 TCCATGTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (29 bp):
AAATATAATTAAATTAAAATAATTTTTAT
Found at i:69140294 original size:9 final size:9
Alignment explanation
Indices: 69140277--69140424 Score: 131
Period size: 9 Copynumber: 16.7 Consensus size: 9
69140267 TATATACTTG
69140277 AACTTACAT
1 AACTTACAT
*
69140286 AACTCACAT
1 AACTTACAT
69140295 AACTTACAT
1 AACTTACAT
*
69140304 AACTTATAT
1 AACTTACAT
69140313 AACTTACAT
1 AACTTACAT
69140322 AACTTACAT
1 AACTTACAT
*
69140331 AACTCACAT
1 AACTTACAT
*
69140340 AACTCACAT
1 AACTTACAT
* *
69140349 AACTGACAG
1 AACTTACAT
*
69140358 AACTTATAT
1 AACTTACAT
**
69140367 AACTTTTAT
1 AACTTACAT
*
69140376 AACTTGCAT
1 AACTTACAT
69140385 AA--TACAT
1 AACTTACAT
* *
69140392 AA-ATAGAT
1 AACTTACAT
* *
69140400 ATCATATCAT
1 AACTTA-CAT
*
69140410 AACTTATAT
1 AACTTACAT
69140419 AACTTA
1 AACTTA
69140425 ATTATACTTA
Statistics
Matches: 116, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
7 6 0.05
8 5 0.04
9 99 0.85
10 6 0.05
ACGTcount: A:0.45, C:0.20, G:0.03, T:0.33
Consensus pattern (9 bp):
AACTTACAT
Found at i:69145444 original size:13 final size:14
Alignment explanation
Indices: 69145428--69145456 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
69145418 TTATAAATAT
69145428 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
69145441 TTATAATGGTTTAA
1 TTATAATGGTTTAA
69145455 TT
1 TT
69145457 CGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:69146356 original size:43 final size:43
Alignment explanation
Indices: 69146308--69146514 Score: 207
Period size: 43 Copynumber: 4.7 Consensus size: 43
69146298 TGTGAAAAAA
* *
69146308 GCACTTTTCCCATAAACGCCGCTAAAATCCATGACCTTTAGCG
1 GCACTTTTCCCACAAACGCCGCTAAAAGCCATGACCTTTAGCG
* * *
69146351 GCACTTTTGCGCTTTTCCACAAACGACGCTAAAAGACTTGACCTTTAGCG
1 GCACTTTT---C----CCACAAACGCCGCTAAAAGCCATGACCTTTAGCG
* * * *
69146401 ACACTTTTACCACAAACGCTGCTAAAAGCCTTGACCTTTAGCG
1 GCACTTTTCCCACAAACGCCGCTAAAAGCCATGACCTTTAGCG
** *
69146444 GTGCTTTTCCCACAAACGCCGCTAAAAGCCATGACTTTTAGCG
1 GCACTTTTCCCACAAACGCCGCTAAAAGCCATGACCTTTAGCG
** * *
69146487 GTGCTTTTCCCACAAACTCCACTAAAAG
1 GCACTTTTCCCACAAACGCCGCTAAAAG
69146515 TCTTGATTTT
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
43 101 0.73
46 1 0.01
50 36 0.26
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.26
Consensus pattern (43 bp):
GCACTTTTCCCACAAACGCCGCTAAAAGCCATGACCTTTAGCG
Found at i:69146381 original size:50 final size:51
Alignment explanation
Indices: 69146311--69146408 Score: 135
Period size: 50 Copynumber: 1.9 Consensus size: 51
69146301 GAAAAAAGCA
* * ** *
69146311 CTTTTCCCATAAACGCCGCTAAAATCCATGACCTTTAGCGGCACTTTTGCG
1 CTTTTCCCACAAACGACGCTAAAAGACATGACCTTTAGCGACACTTTTGCG
*
69146362 CTTTT-CCACAAACGACGCTAAAAGACTTGACCTTTAGCGACACTTTT
1 CTTTTCCCACAAACGACGCTAAAAGACATGACCTTTAGCGACACTTTT
69146409 ACCACAAACG
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
50 36 0.88
51 5 0.12
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.30
Consensus pattern (51 bp):
CTTTTCCCACAAACGACGCTAAAAGACATGACCTTTAGCGACACTTTTGCG
Found at i:69147950 original size:46 final size:46
Alignment explanation
Indices: 69147897--69148075 Score: 238
Period size: 46 Copynumber: 3.9 Consensus size: 46
69147887 GGATATTTGG
69147897 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * *
69147943 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA
69147989 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 -GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* ** *
69148036 ACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69148076 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 70 0.60
47 34 0.29
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:69148055 original size:93 final size:93
Alignment explanation
Indices: 69147896--69148067 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
69147886 GGGATATTTG
* *
69147896 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCATCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
69147961 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
69147989 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
69148054 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
69148068 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:69152823 original size:13 final size:13
Alignment explanation
Indices: 69152805--69152829 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69152795 TTGTTAGCCC
69152805 TTATTATTTATTA
1 TTATTATTTATTA
69152818 TTATTATTTATT
1 TTATTATTTATT
69152830 TCCCTTCAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTATTATTTATTA
Found at i:69160994 original size:22 final size:23
Alignment explanation
Indices: 69160931--69161008 Score: 86
Period size: 26 Copynumber: 3.3 Consensus size: 23
69160921 CAAGTAAGTA
* *
69160931 AAAAAAAGTTTCGAAAAAAAGTTTAA
1 AAAAAAAGTTTCGAAAAAAA--CT-C
*
69160957 AAAAAAAGTTTCGAAAAAAGCTC
1 AAAAAAAGTTTCGAAAAAAACTC
*
69160980 AAAAAAAGTTT-GAAAAAAATTC
1 AAAAAAAGTTTCGAAAAAAACTC
69161002 AAAAAAA
1 AAAAAAA
69161009 AATTCAAGAA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
22 16 0.34
23 11 0.23
24 1 0.02
26 19 0.40
ACGTcount: A:0.64, C:0.06, G:0.10, T:0.19
Consensus pattern (23 bp):
AAAAAAAGTTTCGAAAAAAACTC
Found at i:69160998 original size:12 final size:13
Alignment explanation
Indices: 69160931--69160998 Score: 81
Period size: 13 Copynumber: 5.5 Consensus size: 13
69160921 CAAGTAAGTA
69160931 AAAAAAAGTTTCG
1 AAAAAAAGTTTCG
**
69160944 AAAAAAAGTTTAA
1 AAAAAAAGTTTCG
69160957 AAAAAAAGTTTCG
1 AAAAAAAGTTTCG
*
69160970 -AAAAAAG-CTC-
1 AAAAAAAGTTTCG
69160980 AAAAAAAGTTT-G
1 AAAAAAAGTTTCG
69160992 AAAAAAA
1 AAAAAAA
69160999 TTCAAAAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
11 9 0.20
12 15 0.33
13 22 0.48
ACGTcount: A:0.63, C:0.06, G:0.12, T:0.19
Consensus pattern (13 bp):
AAAAAAAGTTTCG
Found at i:69162080 original size:12 final size:12
Alignment explanation
Indices: 69162060--69162113 Score: 56
Period size: 12 Copynumber: 4.6 Consensus size: 12
69162050 GAAAAAGAAC
69162060 AAAAAGAGAGTG
1 AAAAAGAGAGTG
* *
69162072 AAAATGAGATTG
1 AAAAAGAGAGTG
* *
69162084 AAAAAGA-AATC
1 AAAAAGAGAGTG
*
69162095 AAAAAGAGAATG
1 AAAAAGAGAGTG
69162107 AAAAAGA
1 AAAAAGA
69162114 TTTTGAGAGA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
11 9 0.26
12 26 0.74
ACGTcount: A:0.65, C:0.02, G:0.22, T:0.11
Consensus pattern (12 bp):
AAAAAGAGAGTG
Found at i:69162100 original size:11 final size:12
Alignment explanation
Indices: 69162051--69162113 Score: 51
Period size: 12 Copynumber: 5.5 Consensus size: 12
69162041 GATGAAAAAG
69162051 AAAA-AGAA-CA
1 AAAAGAGAATCA
* *
69162061 AAAAGAGAGTGA
1 AAAAGAGAATCA
* * *
69162073 AAATGAGATTGA
1 AAAAGAGAATCA
69162085 AAAAGA-AATCA
1 AAAAGAGAATCA
*
69162096 AAAAGAGAATGA
1 AAAAGAGAATCA
69162108 AAAAGA
1 AAAAGA
69162114 TTTTGAGAGA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
10 4 0.10
11 12 0.29
12 26 0.62
ACGTcount: A:0.67, C:0.03, G:0.21, T:0.10
Consensus pattern (12 bp):
AAAAGAGAATCA
Found at i:69162115 original size:33 final size:32
Alignment explanation
Indices: 69162050--69162115 Score: 89
Period size: 35 Copynumber: 2.0 Consensus size: 32
69162040 CGATGAAAAA
*
69162050 GAAAAAGAACAAAAAGAGAGTGAAAATGAGATT
1 GAAAAAGAACAAAAAGAGAATGAAAA-GAGATT
69162083 GAAAAAGAAATCAAAAAGAGAATGAAAA-AGATT
1 GAAAAAG-AA-CAAAAAGAGAATGAAAAGAGATT
69162116 TTGAGAGAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 12 0.40
34 2 0.07
35 16 0.53
ACGTcount: A:0.64, C:0.03, G:0.21, T:0.12
Consensus pattern (32 bp):
GAAAAAGAACAAAAAGAGAATGAAAAGAGATT
Found at i:69162179 original size:22 final size:23
Alignment explanation
Indices: 69162154--69162201 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
69162144 ACAACGAGTG
69162154 GAAAAAAGAGAT-TA-AGGAAAAA
1 GAAAAAAGAGATCTAGA-GAAAAA
**
69162176 GAAACGAGAGATCTAGAGAAAAA
1 GAAAAAAGAGATCTAGAGAAAAA
69162199 GAA
1 GAA
69162202 TCAAGTGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 10 0.45
23 11 0.50
24 1 0.05
ACGTcount: A:0.62, C:0.04, G:0.25, T:0.08
Consensus pattern (23 bp):
GAAAAAAGAGATCTAGAGAAAAA
Found at i:69163949 original size:18 final size:18
Alignment explanation
Indices: 69163926--69163961 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
69163916 TGAAATATGT
69163926 TTGCCATGCCCAATTGAG
1 TTGCCATGCCCAATTGAG
69163944 TTGCCATGCCCAATTGAG
1 TTGCCATGCCCAATTGAG
69163962 ATTATTGCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (18 bp):
TTGCCATGCCCAATTGAG
Found at i:69171129 original size:40 final size:40
Alignment explanation
Indices: 69171085--69171216 Score: 194
Period size: 40 Copynumber: 3.3 Consensus size: 40
69171075 CTACTAGTTC
* * *
69171085 AAACGCCTTCGGGACATAGCCCGG-TTATAGCAACTCGCAT
1 AAACGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCAT
69171125 AAACGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAT
1 AAACGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAT
* *
69171165 AAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
1 AAACGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAT
*
69171205 AAATGCCTTCGG
1 AAACGCCTTCGG
69171217 ATCCTAGTCT
Statistics
Matches: 85, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
40 83 0.98
41 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
AAACGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAT
Found at i:69177566 original size:44 final size:45
Alignment explanation
Indices: 69177505--69177611 Score: 110
Period size: 46 Copynumber: 2.4 Consensus size: 45
69177495 GATGCCACAT
* *
69177505 CCCAAACATCGTCTTACAGTAAC-ACATCTC-ATAGCCGATGCATGC
1 CCCAGACAT-GTCTTACACTAACTACATCTCGA-AGCCGATGCATGC
** * * *
69177550 CCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGT
1 CCCAGACATGTCTTACACTAAC-TACATCTCGAAGCCGATGCATGC
69177596 CCCAGACATGTCTTAC
1 CCCAGACATGTCTTAC
69177612 GCTAGCGCTC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
44 10 0.19
45 8 0.15
46 33 0.63
47 1 0.02
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (45 bp):
CCCAGACATGTCTTACACTAACTACATCTCGAAGCCGATGCATGC
Found at i:69177588 original size:46 final size:45
Alignment explanation
Indices: 69177538--69177708 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 45
69177528 ACATCTCATA
*
69177538 GCCGATGCATGCCCCAGACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CGTCTCGAG
* * *
69177584 GCCGATGCATGTCCCAGACATGTCTTACGCTAGCGC-TCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACT-G-GCTTCGTCTCGAG
* * * *
69177630 GCCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCGT-CTCGAG
*
69177678 GCTGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
69177709 AGCTCACACA
Statistics
Matches: 105, Mismatches: 13, Indels: 14
0.80 0.10 0.11
Matches are distributed among these distances:
46 55 0.52
47 29 0.28
48 20 0.19
49 1 0.01
ACGTcount: A:0.20, C:0.30, G:0.22, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCGTCTCGAG
Found at i:69177869 original size:27 final size:26
Alignment explanation
Indices: 69177824--69177883 Score: 93
Period size: 27 Copynumber: 2.3 Consensus size: 26
69177814 CACAATCAAG
*
69177824 CAATTCATGCTATATTAATTTTAATA
1 CAATTCATGCTATAATAATTTTAATA
*
69177850 CAATTCATTGCTATAATAATTTTGATA
1 CAATTCA-TGCTATAATAATTTTAATA
69177877 CAATTCA
1 CAATTCA
69177884 ATCACATACA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 7 0.23
27 24 0.77
ACGTcount: A:0.38, C:0.13, G:0.05, T:0.43
Consensus pattern (26 bp):
CAATTCATGCTATAATAATTTTAATA
Found at i:69180291 original size:19 final size:19
Alignment explanation
Indices: 69180267--69180304 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
69180257 CGCAAACTCT
69180267 ATCTTTGAACATCAAACAC
1 ATCTTTGAACATCAAACAC
69180286 ATCTTTGAACATCAAACAC
1 ATCTTTGAACATCAAACAC
69180305 CCATCGATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.26, G:0.05, T:0.26
Consensus pattern (19 bp):
ATCTTTGAACATCAAACAC
Found at i:69185390 original size:46 final size:44
Alignment explanation
Indices: 69185338--69185506 Score: 132
Period size: 46 Copynumber: 3.7 Consensus size: 44
69185328 ACATCTCGTA
*
69185338 CCGATGCATGTCCCAAACATGTCTAACACTGGCTTACGTCTCGAGG
1 CCGATGCATGTCCCAAACATGTCT-ACACTGGCTT-CGTCTCAAGG
* *
69185384 CCGATGCATGTCCCAAA-ATGTCGTACACTAGCGC-TCGTCTTAATG
1 CCGATGCATGTCCCAAACATGTC-TACACT-G-GCTTCGTCTCAAGG
*
69185429 CCGATGCGATGTCCCAGACATGGTCTTACACTGGC-TC-TCAT-AATGTGG
1 CCGATGC-ATGTCCCAAACAT-GTC-TACACTGGCTTCGTC-TCAA---GG
* *
69185477 CTGATGCATGTCCCAGACATGTCTTACACT
1 CCGATGCATGTCCCAAACATGTC-TACACT
69185507 AGCTCACACA
Statistics
Matches: 106, Mismatches: 7, Indels: 20
0.80 0.05 0.15
Matches are distributed among these distances:
45 28 0.26
46 44 0.42
47 18 0.17
48 16 0.15
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (44 bp):
CCGATGCATGTCCCAAACATGTCTACACTGGCTTCGTCTCAAGG
Found at i:69185919 original size:12 final size:11
Alignment explanation
Indices: 69185904--69185937 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
69185894 AAATAAGTTC
69185904 AAAAATAAATAA
1 AAAAATAAA-AA
69185916 AAAAATAAAAA
1 AAAAATAAAAA
69185927 ATAAAATAAAA
1 A-AAAATAAAA
69185938 CAACTTCCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 3 0.14
12 18 0.86
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAAATAAAAA
Found at i:69186084 original size:19 final size:19
Alignment explanation
Indices: 69186060--69186157 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
69186050 AATCTTTAAG
69186060 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
69186079 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
69186098 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
69186115 GATATGCAATCTTTGATAT
1 GATATGCAATCTTAGATAT
*
69186134 GATATGCAATATTGAAGATAT
1 GATATGCAATCTT--AGATAT
69186155 GAT
1 GAT
69186158 CTTGTAATAT
Statistics
Matches: 72, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
17 17 0.24
19 47 0.65
21 8 0.11
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:69186090 original size:36 final size:35
Alignment explanation
Indices: 69186050--69186157 Score: 112
Period size: 36 Copynumber: 2.9 Consensus size: 35
69186040 ATGGAAATAT
69186050 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATGC
69186086 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATGC
*
69186122 AATCTTTGATATGATATGCAATATTGAAGATATGAT
1 AATCTTT-A-A-GATATGCAATCTT--AGATATGAT
69186158 CTTGTAATAT
Statistics
Matches: 61, Mismatches: 1, Indels: 16
0.78 0.01 0.21
Matches are distributed among these distances:
33 6 0.10
34 1 0.02
35 2 0.03
36 28 0.46
37 2 0.03
38 6 0.10
40 10 0.16
41 6 0.10
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATGC
Found at i:69194027 original size:44 final size:44
Alignment explanation
Indices: 69193884--69194332 Score: 240
Period size: 44 Copynumber: 10.2 Consensus size: 44
69193874 CAAAGAAACA
* *
69193884 AGATTTGGCATCCTTGTGTGTATAGGGAGAC-AGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGA-ACAAG-TCGAAGATAGC
* * * * * ** **
69193929 AAATTTGACACTCCC-GTGCTTACAGCGAAGTAGATCGAAGATTTC
1 AGATTTGGCA-TCCCTGTGTTTATAGGGAACAAG-TCGAAGATAGC
* *
69193974 AGCA--TGGCATCCCTGTGTTTATAGGGAATAAGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
*
69194017 AGATTTGGCATCCCTGTGTTTATAGGGAAC-AGATCGAAGATAGT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAG-TCGAAGATAGC
* * * * * * * * * ***
69194061 AGATCTGACA-CTCTTATGCTTACAGCGAAGCAAATCTAAGATTTT
1 AGATTTGGCATC-CCTGTGTTTATAGGGAA-CAAGTCGAAGATAGC
* * **
69194106 AGCA--TGGCATCCCTGTGTCTATAGGGAACAAGTTGAAGATAAT
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
*
69194149 AGATTTGGCATCCCTGTGTTTATAGGGAAC-AGATCAAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAG-TCGAAGATAGC
* * * * * * * ***
69194193 AGATCTGACAGT-CCTGTGCTTACA-GCAAAACAGATCAAAGATTTT
1 AGATTTGGCA-TCCCTGTGTTTATAGGGAACA-AG-TCGAAGATAGC
** *
69194238 A-ACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAA-ATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
** * *
69194280 AGATTTATCATCCATGTGTTTATAGGGAACAAATCGAAGACATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAG--ATAGC
69194326 AGATTTG
1 AGATTTG
69194333 ACTTTTGGAT
Statistics
Matches: 300, Mismatches: 80, Indels: 47
0.70 0.19 0.11
Matches are distributed among these distances:
42 5 0.02
43 67 0.22
44 152 0.51
45 59 0.20
46 17 0.06
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.28
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
Found at i:69194122 original size:132 final size:132
Alignment explanation
Indices: 69193884--69194334 Score: 625
Period size: 132 Copynumber: 3.4 Consensus size: 132
69193874 CAAAGAAACA
* * * * *
69193884 AGATTTGGCATCCTTGTGTGTATAGGGAGACAGATCGAAGATAGCAAATTTGACACTCCCGTGCT
1 AGATTTGGCATCCCTGTGTTTATAGGGA-ACAGATCGAAGATAGCAGATCTGACACTCCTGTGCT
* * * *
69193949 TACAGCGAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAATAAGTTGAAGAT
65 TACAGCGAAGCAGATCAAAGATTTTAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
69194014 AGC
130 AGC
* * *
69194017 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGTAGATCTGACACTCTTATGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * *
69194082 ACAGCGAAGCAAATCTAAGATTTTAGCATGGCATCCCTGTGTCTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCAAAGATTTTAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
**
69194147 AT
131 GC
* *
69194149 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCAAAGATAGCAGATCTGACAGTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * *
69194214 ACAGCAAAACAGATCAAAGATTTTAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAA-ATA
66 ACAGCGAAGCAGATCAAAGATTTTAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
69194278 GC
131 GC
** * * *
69194280 AGATTTATCATCCATGTGTTTATAGGGAACAAATCGAAGACATAGCAGATTTGAC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAG--ATAGCAGATCTGAC
69194335 TTTTGGATGT
Statistics
Matches: 281, Mismatches: 35, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
131 37 0.13
132 205 0.73
133 39 0.14
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
ACAGCGAAGCAGATCAAAGATTTTAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GC
Found at i:69194504 original size:87 final size:86
Alignment explanation
Indices: 69194407--69194728 Score: 196
Period size: 87 Copynumber: 3.7 Consensus size: 86
69194397 GAGAGCAGAT
*
69194407 ACATAGCAGATCTAACCTTCAGATGATTTTACTGAAGCAGATCTAAAATGATTTGGCATCCTTGT
1 ACATAGCAGATCTAACCTTCAGATG-TTTTACTGAAGCAGATCTAAAATGATTTGGCATCCTTAT
69194472 GTTTACAAGGAACAAATCGAAG
65 GTTTACAAGGAACAAATCGAAG
* * * ** ** * * *
69194494 ACATAGCAGATTTGACTTTTGGATGTTCTTACACCAAAGCAGATCCAAGATAACAGATCTGGCAT
1 ACATAGCAGATCTAACCTTCAGATGTT-TT--ACTGAAGCAGAT-CTA-A-AA-TGATTTGGCAT
* * *
69194559 -CTCCA--TTT-CGACGGAGAGC--A--G-AT
59 CCT-TATGTTTAC-AAGGA-A-CAAATCGAAG
* * * *
69194582 ACATAGTAGATCTAACCTTTAGATGATTTTACTGAAGCAGATCCAAGATGATTTGGCATCCTTAT
1 ACATAGCAGATCTAACCTTCAGATG-TTTTACTGAAGCAGATCTAAAATGATTTGGCATCCTTAT
* *
69194647 GTTCACAAGGAGCAAATCGAAG
65 GTTTACAAGGAACAAATCGAAG
* ** * * * *
69194669 ACATAGCAGATTTGGCTTTCACG-TGTTTACACTGAAGTAGATCTAAGATGATTTGGCATC
1 ACATAGCAGATCTAACCTTCA-GATGTTT-TACTGAAGCAGATCTAAAATGATTTGGCATC
69194729 TCTGTATTGT
Statistics
Matches: 173, Mismatches: 39, Indels: 46
0.67 0.15 0.18
Matches are distributed among these distances:
82 11 0.06
83 3 0.02
84 8 0.05
85 3 0.02
86 16 0.09
87 68 0.39
88 24 0.14
89 13 0.08
90 3 0.02
91 9 0.05
92 5 0.03
93 10 0.06
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (86 bp):
ACATAGCAGATCTAACCTTCAGATGTTTTACTGAAGCAGATCTAAAATGATTTGGCATCCTTATG
TTTACAAGGAACAAATCGAAG
Found at i:69194585 original size:175 final size:175
Alignment explanation
Indices: 69194288--69194687 Score: 683
Period size: 175 Copynumber: 2.3 Consensus size: 175
69194278 GCAGATTTAT
* * *
69194288 CATCCATGTGTTTATAGGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATGTTCTCACAC
1 CATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATGTTCTCACAC
69194353 CAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACAGAGAGCAGATACATAGCAGAT
66 CAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACAGAGAGCAGATACATAGCAGAT
*
69194418 CTAACCTTCAGATGATTTTACTGAAGCAGATCTAAAATGATTTGG
131 CTAACCTTCAGATGATTTTACTGAAGCAGATCCAAAATGATTTGG
*
69194463 CATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATGTTCTTACAC
1 CATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATGTTCTCACAC
* *
69194528 CAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGTAGAT
66 CAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACAGAGAGCAGATACATAGCAGAT
* *
69194593 CTAACCTTTAGATGATTTTACTGAAGCAGATCCAAGATGATTTGG
131 CTAACCTTCAGATGATTTTACTGAAGCAGATCCAAAATGATTTGG
* * * *
69194638 CATCCTTATGTTCACAAGGAGCAAATCGAAGACATAGCAGATTTGGCTTT
1 CATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTT
69194688 CACGTGTTTA
Statistics
Matches: 212, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
175 212 1.00
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.28
Consensus pattern (175 bp):
CATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATGTTCTCACAC
CAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACAGAGAGCAGATACATAGCAGAT
CTAACCTTCAGATGATTTTACTGAAGCAGATCCAAAATGATTTGG
Found at i:69194756 original size:87 final size:84
Alignment explanation
Indices: 69194612--69194769 Score: 185
Period size: 87 Copynumber: 1.8 Consensus size: 84
69194602 AGATGATTTT
* *
69194612 ACTGAAGCAGATCCAAGATGATTTGGCATCCTTATGTTCACAAGGAGCAAATCGAAGACATAGCA
1 ACTGAAGCAGATCCAAGATGATTTGGCATCCTTATGTTCACAA-GAACAAATCGAAG--ATAACA
69194677 GATTTGGCTTTCACGTGTTTAC
63 GATTTGGCTTTCACGTGTTTAC
* * * * *
69194699 ACTGAAGTAGATCTAAGATGATTTGGCATCTCTGTAT-TGTCAGAA-AACAGATTGAAGATAACA
1 ACTGAAGCAGATCCAAGATGATTTGGCATC-CT-TATGT-TCACAAGAACAAATCGAAGATAACA
69194762 GATTTGGC
63 GATTTGGC
69194770 GTCTCTGTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
85 13 0.21
87 37 0.61
88 3 0.05
89 8 0.13
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.28
Consensus pattern (84 bp):
ACTGAAGCAGATCCAAGATGATTTGGCATCCTTATGTTCACAAGAACAAATCGAAGATAACAGAT
TTGGCTTTCACGTGTTTAC
Found at i:69195026 original size:8 final size:8
Alignment explanation
Indices: 69195013--69195040 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
69195003 AATAAGTTCA
69195013 AAAAAAAT
1 AAAAAAAT
69195021 AAAAAAAT
1 AAAAAAAT
69195029 AAAAAAAT
1 AAAAAAAT
69195037 AAAA
1 AAAA
69195041 CAAAGTCCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAAAAT
Found at i:69195182 original size:14 final size:15
Alignment explanation
Indices: 69195163--69195219 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
69195153 AATCTTTAAG
69195163 GATATG-CAATCTTA
1 GATATGACAATCTTA
69195177 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
69195194 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
69195213 GATATGA
1 GATATGA
69195220 TATGCAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.16
17 18 0.47
19 14 0.37
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:69195204 original size:36 final size:38
Alignment explanation
Indices: 69195163--69195241 Score: 126
Period size: 36 Copynumber: 2.1 Consensus size: 38
69195153 AATCTTTAAG
69195163 GATATGCAATCTTAGATATGATA-CAATCTT-AGATAT
1 GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
69195199 GATATGCAATCTTAGATATGATATGCAATCTTGAAGATAT
1 GATATGCAATCTTAGATATGATA-GCAATCTT-AAGATAT
69195239 GAT
1 GAT
69195242 CTTGTAATCT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
40 9 0.23
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
Found at i:69195210 original size:19 final size:19
Alignment explanation
Indices: 69195163--69195241 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
69195153 AATCTTTAAG
69195163 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
69195182 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
69195199 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
69195218 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
69195239 GAT
1 GAT
69195242 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:69199178 original size:27 final size:27
Alignment explanation
Indices: 69199138--69199242 Score: 133
Period size: 27 Copynumber: 3.9 Consensus size: 27
69199128 AGGAAGCGTC
*
69199138 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
69199165 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
69199192 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* *
69199220 CTGGTGACTCTGTCAC-ATTATCT
1 CTGGTGGCTCTGCCACAATTATCT
69199243 ATTCTGGCAG
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
26 3 0.04
27 48 0.70
28 18 0.26
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:69199248 original size:54 final size:54
Alignment explanation
Indices: 69199138--69199249 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
69199128 AGGAAGCGTC
* * *
69199138 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
* * *
69199192 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTATT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTATT
69199246 CTGG
1 CTGG
69199250 CAGCCAGGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
Found at i:69200904 original size:18 final size:19
Alignment explanation
Indices: 69200878--69200933 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
69200868 CCGCTAAAGG
*
69200878 TAATGAAAT-TTAAAAAAA
1 TAATAAAATATTAAAAAAA
*
69200896 TAATAAAATATTATAAAAA
1 TAATAAAATATTAAAAAAA
*
69200915 TCATGAAAA-ATATAAAAAA
1 TAAT-AAAATAT-TAAAAAA
69200934 TTTAAAATTC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
18 8 0.26
19 13 0.42
20 10 0.32
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.27
Consensus pattern (19 bp):
TAATAAAATATTAAAAAAA
Done.