Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 245 of 444
Found at i:69504757 original size:31 final size:31
Alignment explanation
Indices: 69504719--69504797 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
69504709 TTTAACGATT
69504719 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
69504750 ACTGGGCCAAAGCCTTTTCATAAATCATTTC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
69504781 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
69504798 ACTGTAAATG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:69504868 original size:42 final size:42
Alignment explanation
Indices: 69504821--69504912 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
69504811 TGGCCCATAG
* ** * *
69504821 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGAAA
69504863 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGAAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGAAA
69504905 GCCCATTT
1 GCCCATTT
69504913 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGAAA
Found at i:69505100 original size:26 final size:26
Alignment explanation
Indices: 69505057--69505154 Score: 144
Period size: 26 Copynumber: 3.8 Consensus size: 26
69505047 CCTCTTTAAT
69505057 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* **
69505082 ACCTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
69505108 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
69505134 AACTGGGGTGTAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
69505155 GCACTTCCTC
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
25 9 0.14
26 55 0.86
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:69505130 original size:52 final size:51
Alignment explanation
Indices: 69505057--69505154 Score: 160
Period size: 52 Copynumber: 1.9 Consensus size: 51
69505047 CCTCTTTAAT
*
69505057 AACTGGGGCAAAGCCCTTTTCGGTAACCTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
**
69505108 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGTGTAAGCCCTTTT
1 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
69505155 GCACTTCCTC
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
51 10 0.23
52 33 0.77
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (51 bp):
AACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:69505987 original size:27 final size:27
Alignment explanation
Indices: 69505957--69506021 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
69505947 GGGCATATTC
69505957 GTCATTTTACCCTACACGGGCTTTACG
1 GTCATTTTACCCTACACGGGCTTTACG
* *
69505984 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCCTACACGGGCTTTACG
*
69506011 GTCTTTTTACC
1 GTCATTTTACC
69506022 TAATAGGGGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.17, C:0.29, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTACACGGGCTTTACG
Found at i:69506105 original size:27 final size:26
Alignment explanation
Indices: 69506079--69506242 Score: 89
Period size: 27 Copynumber: 6.0 Consensus size: 26
69506069 ATCTACAAAC
69506079 TAAGGGTATTTCAGTAATTTTGTAAA
1 TAAGGGTATTTCAGTAATTTTGTAAA
* *
69506105 CCAATGGTATTTCTA-TAATTTT-TAGAAA
1 -TAAGGGTATTTC-AGTAATTTTGT--AAA
** *
69506133 GTCAAGGGTATTTTTGTAACTTTGTAAA
1 -T-AAGGGTATTTCAGTAATTTTGTAAA
* ** **
69506161 TCAGGGGTATTTTGGTAATTTTACAAA
1 T-AAGGGTATTTCAGTAATTTTGTAAA
* * **
69506188 TTGAGGGTATTTCGGTAATTTTACAAA
1 -TAAGGGTATTTCAGTAATTTTGTAAA
* *
69506215 TCAAGGATATTTTAGTAATTTTGTAAA
1 T-AAGGGTATTTCAGTAATTTTGTAAA
69506242 T
1 T
69506243 TGAGGGTAAA
Statistics
Matches: 107, Mismatches: 22, Indels: 16
0.74 0.15 0.11
Matches are distributed among these distances:
26 2 0.02
27 81 0.76
28 8 0.07
29 15 0.14
30 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (26 bp):
TAAGGGTATTTCAGTAATTTTGTAAA
Found at i:69506257 original size:27 final size:27
Alignment explanation
Indices: 69506229--69506439 Score: 251
Period size: 27 Copynumber: 7.8 Consensus size: 27
69506219 GGATATTTTA
* * *
69506229 GTAATTTTGTAAATTGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * * *
69506256 GTAATTGTGTAAATCAAGGGTGAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
69506283 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
69506310 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
69506337 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * * *
69506364 ATAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
69506391 GTAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
69506418 GTAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
69506440 CTTTGGTAAT
Statistics
Matches: 165, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 165 1.00
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:69506260 original size:54 final size:54
Alignment explanation
Indices: 69506158--69506261 Score: 120
Period size: 54 Copynumber: 1.9 Consensus size: 54
69506148 GTAACTTTGT
* * * ** *
69506158 AAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTAC
1 AAATCAAGGATATTTTAGTAATTTTACAAATTGAGGGTAAATCAGTAATTTTAC
**
69506212 AAATCAAGGATATTTTAGTAATTTTGTAAATTGAGGGTAAAAT-AGTAATT
1 AAATCAAGGATATTTTAGTAATTTTACAAATTGAGGGT-AAATCAGTAATT
69506262 GTGTAAATCA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
54 39 0.95
55 2 0.05
ACGTcount: A:0.36, C:0.05, G:0.20, T:0.39
Consensus pattern (54 bp):
AAATCAAGGATATTTTAGTAATTTTACAAATTGAGGGTAAATCAGTAATTTTAC
Found at i:69506493 original size:27 final size:27
Alignment explanation
Indices: 69506428--69506534 Score: 92
Period size: 27 Copynumber: 4.0 Consensus size: 27
69506418 GTAATTCTGT
* *
69506428 AAATCGGGGGTACTTT-GGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTAC
* * *
69506455 AAGTCTAAGGTATTTCAGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
* *
69506482 AAATCGAGGGTATTTCAATATTTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
* **
69506509 AAA-CTAAGGGTATTTTGGTAATTTTA
1 AAATC-GAGGGTATTTCAGTAATTTTA
69506535 GTAAACTAAA
Statistics
Matches: 63, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
26 4 0.06
27 59 0.94
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
AAATCGAGGGTATTTCAGTAATTTTAC
Found at i:69509356 original size:43 final size:42
Alignment explanation
Indices: 69509274--69509421 Score: 154
Period size: 43 Copynumber: 3.5 Consensus size: 42
69509264 TAAGACAACG
* * * *
69509274 TGTAAGACCGTGTCTGGGACATAGGCCTTGATTGAGATTTACA
1 TGTAAGACCATGTCTGGGACATAGGCATCGATT-TGATTTACA
* * *
69509317 TATAAGACCATGTCTGGGACATCGGCATCGTATTTGATTT-CG
1 TGTAAGACCATGTCTGGGACATAGGCATCG-ATTTGATTTACA
* * * *
69509359 TGTAAGACCCTGTCTGGGACAGAGGCATCAATATTGAATTACA
1 TGTAAGACCATGTCTGGGACATAGGCATCGAT-TTGATTTACA
*
69509402 TGTAAGACCACGTCTGGGAC
1 TGTAAGACCATGTCTGGGAC
69509422 GTCAGCATTG
Statistics
Matches: 86, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
41 2 0.02
42 32 0.37
43 49 0.57
44 3 0.03
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATAGGCATCGATTTGATTTACA
Found at i:69512217 original size:40 final size:39
Alignment explanation
Indices: 69512173--69512358 Score: 214
Period size: 40 Copynumber: 4.6 Consensus size: 39
69512163 GCTACTCGTT
* * *
69512173 CAAATACCTTCAGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCA
*
69512213 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCA
*
69512253 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
69512293 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
69512334 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
69512359 CATCATTCGA
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:69514221 original size:20 final size:20
Alignment explanation
Indices: 69514196--69514251 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
69514186 AAGTTAATGC
69514196 TAAGTAAATGAAATGGAAAG
1 TAAGTAAATGAAATGGAAAG
*
69514216 TAAGTAAATGAAATGTAAAG
1 TAAGTAAATGAAATGGAAAG
*
69514236 TAAGTAAATGGAATGG
1 TAAGTAAATGAAATGG
69514252 TAAGAAAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.52, C:0.00, G:0.25, T:0.23
Consensus pattern (20 bp):
TAAGTAAATGAAATGGAAAG
Found at i:69515554 original size:10 final size:10
Alignment explanation
Indices: 69515541--69515579 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
69515531 ATATATGAAT
69515541 ATATCATGGC
1 ATATCATGGC
69515551 ATATCATGTGC
1 ATATCATG-GC
69515562 ATATCATGGC
1 ATATCATGGC
69515572 ATATCATG
1 ATATCATG
69515580 TACAAATCAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:69515567 original size:21 final size:21
Alignment explanation
Indices: 69515541--69515580 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
69515531 ATATATGAAT
69515541 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
69515562 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
69515581 ACAAATCAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:69515588 original size:21 final size:21
Alignment explanation
Indices: 69515543--69515588 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
69515533 ATATGAATAT
* *
69515543 ATCATGGCATATCATGTGCAT
1 ATCATGGCATATCATGTACAA
69515564 ATCATGGCATATCATGTACAA
1 ATCATGGCATATCATGTACAA
69515585 ATCA
1 ATCA
69515589 GTATCACATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (21 bp):
ATCATGGCATATCATGTACAA
Found at i:69518645 original size:28 final size:28
Alignment explanation
Indices: 69518576--69518676 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
69518566 GACAAGATTG
* * * *
69518576 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
69518606 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
69518634 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
69518663 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69518677 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:69525805 original size:28 final size:28
Alignment explanation
Indices: 69525736--69525836 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
69525726 GACAAGATTG
* * * *
69525736 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
69525766 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
69525794 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
69525823 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69525837 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:69536057 original size:27 final size:27
Alignment explanation
Indices: 69536019--69536071 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
69536009 AGTCATACAT
* * *
69536019 CTCATAAGGGCATAATAGTTATTTTAC
1 CTCAAAAGGGCATAACAGTCATTTTAC
69536046 CTCAAAAGGGCATAACAGTCATTTTA
1 CTCAAAAGGGCATAACAGTCATTTTA
69536072 TCAATTTGGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (27 bp):
CTCAAAAGGGCATAACAGTCATTTTAC
Found at i:69543075 original size:38 final size:39
Alignment explanation
Indices: 69543024--69543187 Score: 222
Period size: 39 Copynumber: 4.2 Consensus size: 39
69543014 GAAGGCACTC
* * * *
69543024 GTGCTGGTGTTATATCCGGG-AAAAGTCTCGCAGGCTTT
1 GTGCTGGTATTATATCCGGGCTAAAGTCCCGTAGGCTTT
69543062 GTGCTGGTATTATATCCGGGCTAAAGTCCCGTAGGCTTT
1 GTGCTGGTATTATATCCGGGCTAAAGTCCCGTAGGCTTT
*
69543101 GTGCTGGTATTATATCCGGGTTAAAGTCCCGTAGGCTTT
1 GTGCTGGTATTATATCCGGGCTAAAGTCCCGTAGGCTTT
* * * *
69543140 GTGTTGGTATTATATCCGGGCTTAAAGTACCGCATGCTTT
1 GTGCTGGTATTATATCCGGGC-TAAAGTCCCGTAGGCTTT
*
69543180 GTGGTGGT
1 GTGCTGGT
69543188 GATTGGATTT
Statistics
Matches: 113, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
38 19 0.17
39 72 0.64
40 22 0.19
ACGTcount: A:0.18, C:0.18, G:0.30, T:0.35
Consensus pattern (39 bp):
GTGCTGGTATTATATCCGGGCTAAAGTCCCGTAGGCTTT
Found at i:69543179 original size:40 final size:38
Alignment explanation
Indices: 69542995--69543187 Score: 215
Period size: 39 Copynumber: 4.9 Consensus size: 38
69542985 ATATAATATA
* * * * * *
69542995 TATATCCAGGTTAAGTCCCGAAGGCACTCGTGCTGGTGT
1 TATATCCGGGTAAAGTCCCGCAGGC-TTTGTGCTGGTAT
* *
69543034 TATATCCGGGAAAAGTCTCGCAGGCTTTGTGCTGGTAT
1 TATATCCGGGTAAAGTCCCGCAGGCTTTGTGCTGGTAT
*
69543072 TATATCCGGGCTAAAGTCCCGTAGGCTTTGTGCTGGTAT
1 TATATCCGGG-TAAAGTCCCGCAGGCTTTGTGCTGGTAT
* *
69543111 TATATCCGGGTTAAAGTCCCGTAGGCTTTGTGTTGGTAT
1 TATATCCGGG-TAAAGTCCCGCAGGCTTTGTGCTGGTAT
* * *
69543150 TATATCCGGGCTTAAAGTACCGCATGCTTTGTGGTGGT
1 TATATCCGGG--TAAAGTCCCGCAGGCTTTGTGCTGGT
69543188 GATTGGATTT
Statistics
Matches: 135, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
38 20 0.15
39 92 0.68
40 23 0.17
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.33
Consensus pattern (38 bp):
TATATCCGGGTAAAGTCCCGCAGGCTTTGTGCTGGTAT
Found at i:69547251 original size:27 final size:27
Alignment explanation
Indices: 69547219--69547270 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
69547209 AGTCATACAT
*
69547219 CTCATAAGGGCATAATAGTCATTTTGC
1 CTCATAAGGGCATAACAGTCATTTTGC
*
69547246 CTCATAGGGGCATAACAGTCATTTT
1 CTCATAAGGGCATAACAGTCATTTT
69547271 ATCAATTTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (27 bp):
CTCATAAGGGCATAACAGTCATTTTGC
Found at i:69557170 original size:42 final size:42
Alignment explanation
Indices: 69557123--69557223 Score: 175
Period size: 42 Copynumber: 2.4 Consensus size: 42
69557113 TATTGGTCTC
*
69557123 GGCACTAAGTGTGCGGGCATAAATGGACATGGTGACAAGATT
1 GGCACTAAGTGTGCGGGCATAAATGGACACGGTGACAAGATT
* *
69557165 GGCACTAAGTGTGTGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGCATAAATGGACACGGTGACAAGATT
69557207 GGCACTAAGTGTGCGGG
1 GGCACTAAGTGTGCGGG
69557224 TTTAAAATTT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.29, C:0.14, G:0.36, T:0.22
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGCATAAATGGACACGGTGACAAGATT
Found at i:69557278 original size:28 final size:27
Alignment explanation
Indices: 69557238--69557306 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
69557228 AAATTTGTAC
**
69557238 AGCACTAAGTGTGCAAATTTGATTATAT
1 AGCACTAAGTGTGC-AAGCTGATTATAT
* * *
69557266 AGCACTATGTGTGCGAGCTGATTGTAT
1 AGCACTAAGTGTGCAAGCTGATTATAT
69557293 AGCACTAAGTGTGC
1 AGCACTAAGTGTGC
69557307 GGACTCACTA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
27 22 0.63
28 13 0.37
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCAAGCTGATTATAT
Found at i:69560489 original size:40 final size:40
Alignment explanation
Indices: 69560381--69560590 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
69560371 CGGGATTTAA
* * * * *
69560381 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
69560421 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69560461 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69560501 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69560541 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69560581 CCGGATATAT
1 CCGGATATAT
69560591 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:69568629 original size:40 final size:40
Alignment explanation
Indices: 69568521--69568730 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
69568511 CGGGATTTAA
* * * * *
69568521 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
69568561 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69568601 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69568641 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69568681 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69568721 CCGGATATAT
1 CCGGATATAT
69568731 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:69577270 original size:40 final size:40
Alignment explanation
Indices: 69577225--69577354 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
69577215 CGGAATATAA
69577225 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
69577265 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
69577305 CCGGATGTAGCCACTAGCACAATTGTCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
69577345 CCGGATATAA
1 CCGGATATAA
69577355 TTTCCAGCAT
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:69582115 original size:27 final size:27
Alignment explanation
Indices: 69582096--69582281 Score: 185
Period size: 27 Copynumber: 6.9 Consensus size: 27
69582086 ATTACCAAAG
* * *
69582096 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTTGATTTACAAAATTACCATTT
* *
69582123 TA-CCTTGATTTACAGAATTACCGTTT
1 TACCCTTGATTTACAAAATTACCATTT
* * *
69582149 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTTGATTTACAAAATTACCATTT
* * *
69582176 TAACCTTAATTTATAAAATTACCATTT
1 TACCCTTGATTTACAAAATTACCATTT
**
69582203 TACCCTTGATTTACAAAAATTACTGTTT
1 TACCCTTGATTTAC-AAAATTACCATTT
* * ***
69582231 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACCATTT
*
69582258 TACCCTTGGTTTACAAAATTACCA
1 TACCCTTGATTTACAAAATTACCA
69582282 AAATACCCTA
Statistics
Matches: 136, Mismatches: 21, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
26 25 0.18
27 87 0.64
28 24 0.18
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACCATTT
Found at i:69582276 original size:82 final size:80
Alignment explanation
Indices: 69582083--69582281 Score: 236
Period size: 82 Copynumber: 2.5 Consensus size: 80
69582073 CTCAATTTGT
* * * * *
69582083 AAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTTACCTTGATTTACAGAATTACCGTT
1 AAAATTACCAAAATACCCTTGATTTACAAAATTACCATTTTACCTTGATTTACAAAATTACCGTT
*
69582148 TTACCCTCGATTTAT
66 TTACCCTCGATTTAC
* *** * * * *
69582163 AGAATTACCATTTTAACCTTAATTTATAAAATTACCATTTTACCCTTGATTTACAAAAATTACTG
1 AAAATTACCAAAATACCCTTGATTTACAAAATTACCATTTTA-CCTTGATTTAC-AAAATTACCG
69582228 TTTTACCCTCGATTTAC
64 TTTTACCCTCGATTTAC
* *
69582245 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCA
1 AAAATTACCAAAATACCCTTGATTTACAAAATTACCA
69582282 AAATACCCTA
Statistics
Matches: 95, Mismatches: 22, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
80 32 0.34
81 11 0.12
82 52 0.55
ACGTcount: A:0.35, C:0.21, G:0.07, T:0.37
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTTGATTTACAAAATTACCATTTTACCTTGATTTACAAAATTACCGTT
TTACCCTCGATTTAC
Found at i:69582284 original size:27 final size:27
Alignment explanation
Indices: 69582203--69582459 Score: 187
Period size: 27 Copynumber: 9.4 Consensus size: 27
69582193 ATTACCATTT
* ****
69582203 TACCCTTGATTTACAAAAATTACTGTTT
1 TACCCTTGGTTTAC-AAAATTACTAAAA
* *
69582231 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
*
69582258 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * ** *
69582285 TACCC-TAGTCTGTAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* *** **
69582311 TACCCCTGGTTTGTGAAATTACCGAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * ** *
69582338 TACGCTTGATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* *
69582365 TACCCTTGATTTACAAAATTACAAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
*
69582392 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTG-GTTTAC--AAAATTACTA-AAA
* *
69582421 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
69582448 TACCCTTGGTTT
1 TACCCTTGGTTT
69582460 GTAGATTTAC
Statistics
Matches: 189, Mismatches: 33, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
26 20 0.11
27 130 0.69
28 21 0.11
29 18 0.10
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACTAAAA
Found at i:69582384 original size:54 final size:54
Alignment explanation
Indices: 69582077--69582481 Score: 242
Period size: 54 Copynumber: 7.5 Consensus size: 54
69582067 AATGTCCTCA
* * * ***
69582077 ATTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTTA-CCTTG
1 ATTTGTAAAATTACCAAAATACCCTTGATTTACAAAATTACCGAAATACCCTTG
** * **** * * * ** * *
69582130 ATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACC-ATTTTAACCTTA
1 ATTTGTAAAATTACCAAAATACCCTTGATTTACAAAATTACCGA-AATACCCTTG
* *** * *** *
69582184 ATTTATAAAATTACCATTTTACCCTTGATTTACAAAAATTACTGTTTTACCCTCG
1 ATTTGTAAAATTACCAAAATACCCTTGATTTAC-AAAATTACCGAAATACCCTTG
** * * * *
69582239 ATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTAG
1 ATTTGTAAAATTACCAAAATACCCTTGATTTACAAAATTACCGAAATACCCTTG
* ** * * *** *
69582293 -TCTGTAAAATTACTGAAATACCCCTGGTTTGTGAAATTACCGAAATACGCTTG
1 ATTTGTAAAATTACCAAAATACCCTTGATTTACAAAATTACCGAAATACCCTTG
**
69582346 ATTTGTAAAATTACCAAAATACCCTTGATTTACAAAATTACAAAAATACCCTTG
1 ATTTGTAAAATTACCAAAATACCCTTGATTTACAAAATTACCGAAATACCCTTG
* * * * *
69582400 ACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCTTG
1 A-TTTGT-AAAATTACCA-AAATACCCTTGATTTACAAAATTACCGAAATACCCTTG
* * * *
69582456 GTTTGTAGATTTACCAAAACACCCTT
1 ATTTGTAAAATTACCAAAATACCCTT
69582482 ATAGGATGAA
Statistics
Matches: 275, Mismatches: 68, Indels: 17
0.76 0.19 0.05
Matches are distributed among these distances:
53 80 0.29
54 103 0.37
55 51 0.19
56 41 0.15
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.35
Consensus pattern (54 bp):
ATTTGTAAAATTACCAAAATACCCTTGATTTACAAAATTACCGAAATACCCTTG
Found at i:69582470 original size:110 final size:107
Alignment explanation
Indices: 69582231--69582481 Score: 279
Period size: 110 Copynumber: 2.3 Consensus size: 107
69582221 ATTACTGTTT
* ** * * * *
69582231 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTAGTCT
1 TACCCTTGATTTGTAAAATTACCAAAATACCCTTGATTTACAAAATTACAAAAATACCCTACTCT
* * ***
69582296 GTAAAATTACTGAAATACCCCTGGTTTGTGAAATTACCGAAA
66 CTAAAATTACTGAAATACCACTGGTTTACAAAATTACCGAAA
*
69582338 TACGCTTGATTTGTAAAATTACCAAAATACCCTTGATTTACAAAATTACAAAAATACCCTTGACT
1 TACCCTTGATTTGTAAAATTACCAAAATACCCTTGATTTACAAAATTACAAAAATACCC-T-ACT
* * *
69582403 TTCTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAA
64 CTCT-AAAATTACT-GAAATACCACTGGTTTACAAAATTACCGAAA
* * * *
69582448 TACCCTTGGTTTGTAGATTTACCAAAACACCCTT
1 TACCCTTGATTTGTAAAATTACCAAAATACCCTT
69582482 ATAGGATGAA
Statistics
Matches: 119, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
107 52 0.44
108 1 0.01
109 5 0.04
110 61 0.51
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (107 bp):
TACCCTTGATTTGTAAAATTACCAAAATACCCTTGATTTACAAAATTACAAAAATACCCTACTCT
CTAAAATTACTGAAATACCACTGGTTTACAAAATTACCGAAA
Found at i:69582577 original size:27 final size:27
Alignment explanation
Indices: 69582500--69582577 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
69582490 AAATGACTAA
* * *
69582500 AATACCCCT-AATAGGTAAAAAGACTGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
69582527 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
69582554 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
69582578 AAATAGGCCC
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
26 1 0.02
27 38 0.93
28 2 0.05
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:69583311 original size:20 final size:20
Alignment explanation
Indices: 69583286--69583352 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
69583276 GATATGATAT
*
69583286 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
69583306 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
69583326 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
69583346 ACATGAT
1 ACATGAT
69583353 GTATTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:69583473 original size:25 final size:26
Alignment explanation
Indices: 69583402--69583511 Score: 165
Period size: 26 Copynumber: 4.3 Consensus size: 26
69583392 GAGGAAGTGC
69583402 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
69583428 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
69583454 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
69583479 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
69583502 AAAAGAGGCT
1 AAAAG-GGCT
69583512 AGGCCTCCAG
Statistics
Matches: 79, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
23 5 0.06
24 7 0.09
25 31 0.39
26 36 0.46
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:69583482 original size:51 final size:49
Alignment explanation
Indices: 69583402--69583511 Score: 159
Period size: 51 Copynumber: 2.2 Consensus size: 49
69583392 GAGGAAGTGC
**
69583402 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTT-TGCCCCAG-TTATT
69583453 GAAAAGGGCTT-TGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTATT
69583502 AAAAGAGGCT
1 AAAAG-GGCT
69583512 AGGCCTCCAG
Statistics
Matches: 55, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
48 5 0.09
49 9 0.16
50 8 0.15
51 23 0.42
52 10 0.18
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTATT
Found at i:69583703 original size:42 final size:42
Alignment explanation
Indices: 69583644--69583735 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
69583634 TAGTCTCCCA
* ** *
69583644 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
* *
69583686 AAATGGGCTTGCATACATCCATTGACATTACTTGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
69583728 AAATGGGC
1 AAATGGGC
69583736 CTTTGGGCCA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:69583834 original size:30 final size:30
Alignment explanation
Indices: 69583763--69583835 Score: 119
Period size: 30 Copynumber: 2.4 Consensus size: 30
69583753 TACAGTAAAG
*
69583763 GCTTCGGCCCAATGAAATGATTTATGAAAA
1 GCTTCGGCCCAGTGAAATGATTTATGAAAA
**
69583793 GCTTCGGCCCAGTGCTATGATTTATGAAAA
1 GCTTCGGCCCAGTGAAATGATTTATGAAAA
69583823 GCTTCGGCCCAGT
1 GCTTCGGCCCAGT
69583836 AATCGTTAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (30 bp):
GCTTCGGCCCAGTGAAATGATTTATGAAAA
Found at i:69587437 original size:2 final size:2
Alignment explanation
Indices: 69587425--69587460 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
69587415 ACTTTAACAC
*
69587425 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
69587461 CCCTTTCAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:69596265 original size:32 final size:32
Alignment explanation
Indices: 69596224--69596302 Score: 124
Period size: 32 Copynumber: 2.5 Consensus size: 32
69596214 TGGCATTGAA
* *
69596224 ATGGGCTAGGCCTAACTGATATTGGTTCTGAT-
1 ATGGGCTAGGCCCAACTGATATTGATTCT-ATG
69596256 ATGGGCTAGGCCCAACTGATATTGATTCTATG
1 ATGGGCTAGGCCCAACTGATATTGATTCTATG
69596288 ATGGGCTAGGCCCAA
1 ATGGGCTAGGCCCAA
69596303 TTGAGACTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
31 2 0.05
32 42 0.95
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (32 bp):
ATGGGCTAGGCCCAACTGATATTGATTCTATG
Found at i:69598634 original size:40 final size:40
Alignment explanation
Indices: 69598575--69598782 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
69598565 CAATTGAATG
* * * *
69598575 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
69598615 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
69598655 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
69598695 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
69598735 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
69598775 ATATCCGG
1 ATATCCGG
69598783 TTGTATTCCA
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:69598713 original size:80 final size:80
Alignment explanation
Indices: 69598577--69598782 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
69598567 ATTGAATGAT
* * ** * * *
69598577 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
69598641 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
69598657 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
69598722 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
69598737 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
69598783 TTGTATTCCA
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:69606687 original size:40 final size:40
Alignment explanation
Indices: 69606628--69606835 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
69606618 CAATTGAATG
* * * *
69606628 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
69606668 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
69606708 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
69606748 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
69606788 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
69606828 ATATCCGG
1 ATATCCGG
69606836 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:69606766 original size:80 final size:80
Alignment explanation
Indices: 69606630--69606835 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
69606620 ATTGAATGAT
* * ** * * *
69606630 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
69606694 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
69606710 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
69606775 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
69606790 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
69606836 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:69609107 original size:48 final size:48
Alignment explanation
Indices: 69609041--69609217 Score: 183
Period size: 48 Copynumber: 3.7 Consensus size: 48
69609031 CACGTGTAAA
*
69609041 ACCATGTCTAGGACATGGCATCAACATCGATATAAGACCCCGTATAAG
1 ACCATGTCTAGGACATGGCATCAGCATCGATATAAGACCCCGTATAAG
* * * * * **
69609089 ACCATATCTGGGATATGGCATCGGCATCGAGATAAGGTCCCGTATAAG
1 ACCATGTCTAGGACATGGCATCAGCATCGATATAAGACCCCGTATAAG
* ** * * * *
69609137 ACCATGTCTAGGACATGGCATCAGCACCGATACGATATCCCATGTAAG
1 ACCATGTCTAGGACATGGCATCAGCATCGATATAAGACCCCGTATAAG
* * **
69609185 ACCATGTTTGGGACATGGCATTGGCATCGATAT
1 ACCATGTCTAGGACATGGCATCAGCATCGATAT
69609218 GTGTGTAAGT
Statistics
Matches: 103, Mismatches: 26, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
48 103 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (48 bp):
ACCATGTCTAGGACATGGCATCAGCATCGATATAAGACCCCGTATAAG
Found at i:69609186 original size:96 final size:96
Alignment explanation
Indices: 69609022--69609214 Score: 251
Period size: 96 Copynumber: 2.0 Consensus size: 96
69609012 CAAAATTTCA
* * * *
69609022 AGATAAGGTCACGTGTAAAACCATGTCTAGGACATGGCATCAACATCGATATAAGACCCCGTATA
1 AGATAAGGTCACGTATAAAACCATGTCTAGGACATGGCATCAACACCGATACAAGACCCCATATA
*
69609087 AGACCATATCTGGGATATGGCATCGGCATCG
66 AGACCATATCTGGGACATGGCATCGGCATCG
* * * * * * *
69609118 AGATAAGGTCCCGTATAAGACCATGTCTAGGACATGGCATCAGCACCGATACGATATCCCATGTA
1 AGATAAGGTCACGTATAAAACCATGTCTAGGACATGGCATCAACACCGATACAAGACCCCATATA
* * *
69609183 AGACCATGTTTGGGACATGGCATTGGCATCG
66 AGACCATATCTGGGACATGGCATCGGCATCG
69609214 A
1 A
69609215 TATGTGTGTA
Statistics
Matches: 82, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 82 1.00
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (96 bp):
AGATAAGGTCACGTATAAAACCATGTCTAGGACATGGCATCAACACCGATACAAGACCCCATATA
AGACCATATCTGGGACATGGCATCGGCATCG
Found at i:69609489 original size:48 final size:48
Alignment explanation
Indices: 69609416--69609589 Score: 258
Period size: 48 Copynumber: 3.6 Consensus size: 48
69609406 ATGAGATCCT
* *
69609416 GTGTAAGACCATGTCTAGGACATGGCATCAGCGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* *
69609464 GTGTAAGACCATGTCTGGGATATGGCATCGGTGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* * * * * *
69609512 ATGTAAGACCACGTCTGGGACATGTCATCGGCATTGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
69609560 GTGTAAGACCATGTCTGGGACATGGCATCG
1 GTGTAAGACCATGTCTGGGACATGGCATCG
69609590 CCACTAATAT
Statistics
Matches: 111, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 111 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
Found at i:69609675 original size:42 final size:47
Alignment explanation
Indices: 69609417--69609675 Score: 111
Period size: 48 Copynumber: 5.5 Consensus size: 47
69609407 TGAGATCCTG
** ** * * *
69609417 TGTAAGACCATGTCTAGGACATGGCATCAGCGTTGATATGTGA-GCCA
1 TGTAAGACCATGTCCGGGACATGGCATC-GCACTAATATGAGATTCCA
* * *** * * *
69609464 GTGTAAGACCATGTCTGGGATATGGCATCGGTGTTGATATGTGA-GCCAA
1 -TGTAAGACCATGTCCGGGACATGGCATC-GCACTAATATGAGATTCC-A
* * * * * * * *
69609513 TGTAAGACCACGTCTGGGACATGTCATCGGCATTGATATGTG-TGCTA
1 TGTAAGACCATGTCCGGGACATGGCATC-GCACTAATATGAGATTCCA
* * *
69609560 GTGTAAGACCATGTCTGGGACATGGCATCGCCACTAATATGAGATTTCG
1 -TGTAAGACCATGTCCGGGACATGGCATCG-CACTAATATGAGATTCCA
* * * * * *
69609609 TATAAGACCATATTCGAGATATGGCATCG-A-T-ATGTG-GA-TCCA
1 TGTAAGACCATGTCCGGGACATGGCATCGCACTAATATGAGATTCCA
69609651 TGTAAGACCATGTCCGGGACATGGC
1 TGTAAGACCATGTCCGGGACATGGC
69609676 TTTGGCACTC
Statistics
Matches: 173, Mismatches: 33, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
42 22 0.13
43 2 0.01
44 4 0.02
45 1 0.01
46 1 0.01
47 2 0.01
48 139 0.80
49 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (47 bp):
TGTAAGACCATGTCCGGGACATGGCATCGCACTAATATGAGATTCCA
Found at i:69613476 original size:46 final size:46
Alignment explanation
Indices: 69613426--69613591 Score: 153
Period size: 46 Copynumber: 3.6 Consensus size: 46
69613416 ACCTCTCATA
69613426 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTTATGTCTCGAG
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTTATGTCTCGAG
* * * * *
69613472 GCCGATGCATGTCCCAAATATGTCTTACACT-ACACT-TGTCTCAAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGC-TTATGTCTCGAG
* * * ** *
69613517 GCCGATGCCATGTCCCAGACATGGCCTTACATTGGCTCTTAT-AAT-GTG
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTGG--CTTATGTCTCGAG
69613565 GCCGATGCATGT-CCAAACATGTCTTAC
1 GCCGATGCATGTCCCAAACATGTCTTAC
69613592 TCTAGCTCAC
Statistics
Matches: 95, Mismatches: 18, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
45 21 0.22
46 50 0.53
47 13 0.14
48 7 0.07
49 2 0.02
50 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTGGCTTATGTCTCGAG
Found at i:69613539 original size:92 final size:89
Alignment explanation
Indices: 69613380--69613591 Score: 209
Period size: 92 Copynumber: 2.3 Consensus size: 89
69613370 GCATATTTGT
*
69613380 GCCGATGCCATGTCCTAGAAATGGTCTTACACTGACACCTCTCATAGCCGATGCATGTCCCAAAC
1 GCCGATG-CATGTCCCA-AAAT-GTCTTACACTGACACCTCTCATAGCCGATGCATGTCCCAAAC
* **
69613445 AT-GTCTTACACTGG-CTTATGTCTCGAG
63 ATGGCCTTACACTGGCCTTAT-AAT-GAG
* *
69613472 GCCGATGCATGTCCCAAATATGTCTTACACT-ACACTTGTCTCA-ATGCCGATGCCATGTCCCAG
1 GCCGATGCATGTCCCAAA-ATGTCTTACACTGACAC--CTCTCATA-GCCGATG-CATGTCCCAA
* *
69613535 ACATGGCCTTACATTGGCTCTTATAATGTG
61 ACATGGCCTTACACTGGC-CTTATAATGAG
69613565 GCCGATGCATGT-CCAAACATGTCTTAC
1 GCCGATGCATGTCCCAAA-ATGTCTTAC
69613592 TCTAGCTCAC
Statistics
Matches: 103, Mismatches: 9, Indels: 16
0.80 0.07 0.12
Matches are distributed among these distances:
89 4 0.04
90 13 0.13
91 22 0.21
92 34 0.33
93 24 0.23
94 1 0.01
95 5 0.05
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (89 bp):
GCCGATGCATGTCCCAAAATGTCTTACACTGACACCTCTCATAGCCGATGCATGTCCCAAACATG
GCCTTACACTGGCCTTATAATGAG
Found at i:69613822 original size:9 final size:9
Alignment explanation
Indices: 69613808--69613835 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
69613798 ATGTGGTGAC
69613808 TAGTCGATT
1 TAGTCGATT
69613817 TAGTCGATT
1 TAGTCGATT
69613826 TAGTCGATT
1 TAGTCGATT
69613835 T
1 T
69613836 GCTTGGCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.11, G:0.21, T:0.46
Consensus pattern (9 bp):
TAGTCGATT
Found at i:69622834 original size:51 final size:49
Alignment explanation
Indices: 69622710--69622849 Score: 201
Period size: 51 Copynumber: 2.8 Consensus size: 49
69622700 AAGCTATCTA
*
69622710 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTG
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCGG
* * * *
69622759 GTACACGTAGTAGCCTGCACTTAGTACTACACATGTGATC-ACAGTTTTCGG
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG---TCGG
69622810 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
69622850 TCACAATAGA
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
48 4 0.05
49 36 0.46
51 39 0.49
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (49 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCGG
Found at i:69623172 original size:16 final size:16
Alignment explanation
Indices: 69623151--69623192 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
69623141 ATTTACATAA
*
69623151 CATATATCACATATTT
1 CATATATCACATATTC
69623167 CATATATCACATATTC
1 CATATATCACATATTC
69623183 CATATATCAC
1 CATATATCAC
69623193 TTGTCATGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (16 bp):
CATATATCACATATTC
Found at i:69624141 original size:53 final size:53
Alignment explanation
Indices: 69624056--69624259 Score: 203
Period size: 53 Copynumber: 3.8 Consensus size: 53
69624046 TTCCTTTTTA
* * *
69624056 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATACTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTAT-CTTGCCTTATAG
* * * *
69624109 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATC-TTGCCTTATAG
** ** * * * *
69624163 TAGTTTATGAATGCCATGTCTTGACATGGTCTTACATGATTTTCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTATCTTGCCTTATAG
* * *
69624218 AACTTACCAATGCGATGCCTTGGCATGGTCTTACTTGGTATC
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATC
69624260 CTTAAACCCT
Statistics
Matches: 120, Mismatches: 27, Indels: 8
0.77 0.17 0.05
Matches are distributed among these distances:
52 1 0.01
53 48 0.40
54 30 0.25
55 39 0.32
56 2 0.02
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.37
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTGCCTTATAG
Found at i:69628742 original size:27 final size:27
Alignment explanation
Indices: 69628707--69628825 Score: 148
Period size: 27 Copynumber: 4.4 Consensus size: 27
69628697 CCCCAAAATA
* *
69628707 GGTAAAATGATCGTAATGCCTCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
69628734 GGTAAAATGACCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
69628761 GGTAAAATGACCTTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * ** *
69628788 GATAAAATGATCGTAATATCCCTGTAT
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
69628815 GGTAAATTGAC
1 GGTAAAATGAC
69628826 GATTATGCCC
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.28
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTGTAG
Found at i:69628779 original size:54 final size:54
Alignment explanation
Indices: 69628707--69628825 Score: 166
Period size: 54 Copynumber: 2.2 Consensus size: 54
69628697 CCCCAAAATA
* * *
69628707 GGTAAAATGATCGTAATGCCTCTGTAGGGTAAAATGACCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAGGATAAAATGACCGTAATACCCCTGTAG
* * * *
69628761 GGTAAAATGACCTTAATGCCCCTGTAGGATAAAATGATCGTAATATCCCTGTAT
1 GGTAAAATGACCGTAATGCCCCTGTAGGATAAAATGACCGTAATACCCCTGTAG
*
69628815 GGTAAATTGAC
1 GGTAAAATGAC
69628826 GATTATGCCC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.28
Consensus pattern (54 bp):
GGTAAAATGACCGTAATGCCCCTGTAGGATAAAATGACCGTAATACCCCTGTAG
Found at i:69628837 original size:27 final size:26
Alignment explanation
Indices: 69628705--69628837 Score: 87
Period size: 27 Copynumber: 5.0 Consensus size: 26
69628695 AACCCCAAAA
* *
69628705 TAGGTAAAATGATCG-TAATGCCTCTG
1 TAGGTAAAATGA-CGATTATGCCCCTG
* *
69628731 TAGGGTAAAATGACCG-TAATACCCCTG
1 TA-GGTAAAATGA-CGATTATGCCCCTG
*
69628758 TAGGGTAAAATGAC-CTTAATGCCCCTG
1 TA-GGTAAAATGACGATT-ATGCCCCTG
*
69628785 TAGGATAAAATGATCGTAATAT--CCCTG
1 TAGG-TAAAATGA-CG-ATTATGCCCCTG
*
69628812 TATGGTAAATTGACGATTATGCCCCT
1 TA-GGTAAAATGACGATTATGCCCCT
69628838 ATGTTCCAAA
Statistics
Matches: 88, Mismatches: 9, Indels: 19
0.76 0.08 0.16
Matches are distributed among these distances:
25 4 0.05
26 8 0.09
27 70 0.80
28 3 0.03
29 2 0.02
30 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
TAGGTAAAATGACGATTATGCCCCTG
Found at i:69629211 original size:27 final size:27
Alignment explanation
Indices: 69629175--69629227 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
69629165 CATTACACTG
* *
69629175 TACTAATACTATATTGGGCTTAGGCCA
1 TACTAATACTATATAGGGCTAAGGCCA
* *
69629202 TACTATTACTTTATAGGGCTAAGGCC
1 TACTAATACTATATAGGGCTAAGGCC
69629228 CAGACTGTAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (27 bp):
TACTAATACTATATAGGGCTAAGGCCA
Found at i:69630683 original size:40 final size:40
Alignment explanation
Indices: 69630628--69630859 Score: 295
Period size: 40 Copynumber: 5.8 Consensus size: 40
69630618 TGGATGATAA
* ** * *
69630628 CCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
69630668 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * * *
69630708 CCGAGTTAAGTCCCCAAGGCATTTGTGCGAATTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
69630748 CTGGGCTAAGTCCCGAAGACATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
69630788 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
69630828 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
69630860 AGTTATATCC
Statistics
Matches: 165, Mismatches: 26, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
40 163 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:69638053 original size:40 final size:40
Alignment explanation
Indices: 69637996--69638227 Score: 306
Period size: 40 Copynumber: 5.8 Consensus size: 40
69637986 TGGATGATAA
* ** * *
69637996 CCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
69638036 CTGGGCTAAGTCCCGAAGGCATTTGTGGGAGTTACTAAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
69638077 -CGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
69638116 CCGGGGTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
69638156 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
69638196 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
69638228 AGTTATATTC
Statistics
Matches: 170, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.02
40 160 0.94
41 6 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:69642532 original size:49 final size:44
Alignment explanation
Indices: 69642474--69642586 Score: 127
Period size: 49 Copynumber: 2.5 Consensus size: 44
69642464 ACACCTAAGT
* * * *
69642474 CGATGCCATGTCCTAGACATATCTTACACTGACTTTCATGTATCGAGGC
1 CGATGCCATGTCCCAGACAGATCTTACACTAAC--ACATG--TC-AGGC
* *
69642523 CGATGCCATGTCCCAGATAGGTCTTACACTAACACATGTCAGGC
1 CGATGCCATGTCCCAGACAGATCTTACACTAACACATGTCAGGC
69642567 CGATGCCATGTCCCAGACAG
1 CGATGCCATGTCCCAGACAG
69642587 GTTGTAACAT
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
44 23 0.40
45 2 0.04
47 4 0.07
49 28 0.49
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (44 bp):
CGATGCCATGTCCCAGACAGATCTTACACTAACACATGTCAGGC
Found at i:69645817 original size:20 final size:20
Alignment explanation
Indices: 69645792--69645830 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
69645782 AAAATTTCAA
69645792 TTATTTCACACA-TTTACAAC
1 TTATTTCACA-ATTTTACAAC
*
69645812 TTATTTTACAATTTTACAA
1 TTATTTCACAATTTTACAA
69645831 AATAGCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.46
Consensus pattern (20 bp):
TTATTTCACAATTTTACAAC
Found at i:69650541 original size:28 final size:28
Alignment explanation
Indices: 69650472--69650572 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
69650462 GACAAGATTG
* * * *
69650472 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
69650502 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
69650530 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
69650559 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69650573 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:69660001 original size:30 final size:30
Alignment explanation
Indices: 69659965--69660095 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
69659955 GACAAGATTG
* * * * *
69659965 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
69659995 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
69660023 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
69660053 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
69660082 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69660096 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:69660056 original size:58 final size:58
Alignment explanation
Indices: 69659965--69660095 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
69659955 GACAAGATTG
* * * * * *
69659965 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
69660023 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
69660082 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69660096 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:69668629 original size:46 final size:46
Alignment explanation
Indices: 69668562--69668777 Score: 315
Period size: 46 Copynumber: 4.7 Consensus size: 46
69668552 GGCAACCTGA
69668562 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*
69668608 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* *
69668654 GTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*** * * *
69668700 GAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* * * *
69668746 GAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCA
69668778 TCATGTCAAA
Statistics
Matches: 156, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 156 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
Found at i:69668757 original size:138 final size:130
Alignment explanation
Indices: 69668512--69668777 Score: 379
Period size: 138 Copynumber: 2.0 Consensus size: 130
69668502 AGTGTGCTCT
*
69668512 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
* * * * * *
69668577 TGAAAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
*
69668642 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG--A-G---TG--CAAG
*
69668707 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACT
58 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACC
69668772 ATGGCA
123 ATGGCA
69668778 TCATGTCAAA
Statistics
Matches: 119, Mismatches: 9, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
130 48 0.40
132 1 0.01
133 1 0.01
136 2 0.02
138 67 0.56
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
TGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
Found at i:69670711 original size:39 final size:38
Alignment explanation
Indices: 69670594--69670730 Score: 152
Period size: 40 Copynumber: 3.5 Consensus size: 38
69670584 TATTGTCTAG
69670594 ATGCACATACGTGCCCCTGT-TTGTACTTCGATACCTCTGA
1 ATGCACATACGTG-CCCT-TATTGTACTTCGATACC-CTGA
* * *
69670634 ATGTACACACGTGCCCTTGATTATACTTC-AGTACCCCTGA
1 ATGCACATACGTGCCCTT-ATTGTACTTCGA-TA-CCCTGA
69670674 ATGCACATACGTGCCCTTATTGTACTTCGATATCCCTGA
1 ATGCACATACGTGCCCTTATTGTACTTCGATA-CCCTGA
* *
69670713 ATGCACATGCATGCCCTT
1 ATGCACATACGTGCCCTT
69670731 GTTTATACTT
Statistics
Matches: 83, Mismatches: 9, Indels: 11
0.81 0.09 0.11
Matches are distributed among these distances:
38 1 0.01
39 38 0.46
40 42 0.51
41 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.31
Consensus pattern (38 bp):
ATGCACATACGTGCCCTTATTGTACTTCGATACCCTGA
Found at i:69670728 original size:79 final size:80
Alignment explanation
Indices: 69670594--69670754 Score: 211
Period size: 79 Copynumber: 2.0 Consensus size: 80
69670584 TATTGTCTAG
* *
69670594 ATGCACATACGTGCCCCTGTTTGTACTTCGATACCTCTGAATGTACACACGTGCCCTTGATTATA
1 ATGCACATACGTGCCCCTGTTTGTACTTCGATACCTCTGAATGCACACACATGCCCTTGATTATA
*
69670659 CTTCAGTACCCCTGA
66 CTTCAGTAACCCTGA
** *
69670674 ATGCACATACGTG-CCCT-TATTGTACTTCGATATCC-CTGAATGCACATGCATGCCCTTGTTTA
1 ATGCACATACGTGCCCCTGT-TTGTACTTCGATA-CCTCTGAATGCACACACATGCCCTTGATTA
**
69670736 TACTTTGGTAACCCTGA
64 TACTTCAGTAACCCTGA
69670753 AT
1 AT
69670755 CAAATAGTAT
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
78 1 0.01
79 55 0.77
80 15 0.21
ACGTcount: A:0.23, C:0.28, G:0.16, T:0.33
Consensus pattern (80 bp):
ATGCACATACGTGCCCCTGTTTGTACTTCGATACCTCTGAATGCACACACATGCCCTTGATTATA
CTTCAGTAACCCTGA
Found at i:69670751 original size:40 final size:40
Alignment explanation
Indices: 69670594--69670754 Score: 146
Period size: 40 Copynumber: 4.0 Consensus size: 40
69670584 TATTGTCTAG
* * * * *
69670594 ATGCACATACGTGCCCCTGTTTGTACTTCGAT-ACCTCTGA
1 ATGCACATACATGCCCTTGATTATACTTCGGTAACC-CTGA
* * * * *
69670634 ATGTACACACGTGCCCTTGATTATACTTCAGTACCCCTGA
1 ATGCACATACATGCCCTTGATTATACTTCGGTAACCCTGA
* * * *
69670674 ATGCACATACGTGCCCTT-ATTGTACTTCGATATCCCTGA
1 ATGCACATACATGCCCTTGATTATACTTCGGTAACCCTGA
* * *
69670713 ATGCACATGCATGCCCTTGTTTATACTTTGGTAACCCTGA
1 ATGCACATACATGCCCTTGATTATACTTCGGTAACCCTGA
69670753 AT
1 AT
69670755 CAAATAGTAT
Statistics
Matches: 98, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
39 33 0.34
40 63 0.64
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.16, T:0.33
Consensus pattern (40 bp):
ATGCACATACATGCCCTTGATTATACTTCGGTAACCCTGA
Found at i:69674214 original size:47 final size:46
Alignment explanation
Indices: 69674159--69674289 Score: 172
Period size: 47 Copynumber: 2.8 Consensus size: 46
69674149 CACAATCGAT
* *
69674159 AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTTATCCC
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCC
* * *
69674205 GGAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTC
1 -AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCC
* **
69674252 AATATACCTATGTCATGGCCCGTAGCCAAATCAAGGTA
1 AA-GTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
69674290 TTATTCGCAC
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
46 1 0.01
47 73 0.99
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (46 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCC
Found at i:69680436 original size:42 final size:43
Alignment explanation
Indices: 69680390--69680510 Score: 131
Period size: 43 Copynumber: 2.8 Consensus size: 43
69680380 TTTCGTTATG
69680390 TGATTTCATCTAAGACCATGTCTGGGACA-TCGGCATC-ATATC
1 TGATTTCATCTAAGACCATGTCTGGGACAGT-GGCATCGATATC
* * * * * *
69680432 TGATTTCGTTTAAGACCCTGTCTGGGATAGTGGCATCGATGTT
1 TGATTTCATCTAAGACCATGTCTGGGACAGTGGCATCGATATC
* *
69680475 TGATTACATGTAAGACCATGTCTGGGAC-GTTGGCAT
1 TGATTTCATCTAAGACCATGTCTGGGACAG-TGGCAT
69680511 TGTATATGTT
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
42 32 0.49
43 33 0.51
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (43 bp):
TGATTTCATCTAAGACCATGTCTGGGACAGTGGCATCGATATC
Found at i:69680497 original size:43 final size:42
Alignment explanation
Indices: 69680390--69680502 Score: 129
Period size: 42 Copynumber: 2.7 Consensus size: 42
69680380 TTTCGTTATG
69680390 TGATTTCATCTAAGACCATGTCTGGGACATCGGCATCATATC
1 TGATTTCATCTAAGACCATGTCTGGGACATCGGCATCATATC
* * * * * *
69680432 TGATTTCGTTTAAGACCCTGTCTGGGATAGT-GGCATCGATGTT
1 TGATTTCATCTAAGACCATGTCTGGGACA-TCGGCATC-ATATC
* *
69680475 TGATTACATGTAAGACCATGTCTGGGAC
1 TGATTTCATCTAAGACCATGTCTGGGAC
69680503 GTTGGCATTG
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
42 31 0.53
43 27 0.47
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (42 bp):
TGATTTCATCTAAGACCATGTCTGGGACATCGGCATCATATC
Found at i:69685016 original size:93 final size:93
Alignment explanation
Indices: 69684902--69685073 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
69684892 CGCCCATAAG
*
69684902 CGAACTCGGAATCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGAATCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
69684967 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * * *
69684995 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTTAACTCA
1 CGAACTCGGAATCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
69685060 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
69685074 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGAATCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:69685070 original size:46 final size:46
Alignment explanation
Indices: 69684895--69685070 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
69684885 TGGAACCCGC
* * *
69684895 CCATAAGCGAACTCGGAATCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
69684941 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
69684991 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
69685034 CCATAAGTGAACTCGGACTTAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
69685071 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 60 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:69685089 original size:46 final size:44
Alignment explanation
Indices: 69684903--69685089 Score: 130
Period size: 46 Copynumber: 4.0 Consensus size: 44
69684893 GCCCATAAGC
* * * * *
69684903 GAACTCGGAATCAACTCAACGAGCTCGGGCATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTC-GG-ATGC-CAACCATCTAGT
* *
69684949 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * *
69684996 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAGT
*
69685042 GAACTCGGACTTAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGT
69685088 GA
1 GA
69685090 CAGGTCACTT
Statistics
Matches: 111, Mismatches: 17, Indels: 26
0.72 0.11 0.17
Matches are distributed among these distances:
43 1 0.01
44 13 0.12
45 3 0.03
46 58 0.52
47 30 0.27
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Found at i:69691402 original size:93 final size:93
Alignment explanation
Indices: 69691289--69691460 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69691279 CGCCCATAAG
* *
69691289 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
69691354 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
69691382 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
69691447 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
69691461 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:69691457 original size:46 final size:46
Alignment explanation
Indices: 69691282--69691457 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
69691272 TGTAACCCGC
* * *
69691282 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
69691328 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
69691378 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
69691421 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
69691458 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:69695143 original size:47 final size:47
Alignment explanation
Indices: 69694994--69695153 Score: 132
Period size: 47 Copynumber: 3.4 Consensus size: 47
69694984 GTAAGGTGCC
* * * * *
69694994 GATGCCATTTCCAAGACATGGCTTACACTGGCTCAT-ATCTC-AAG-T
1 GATGCCATGTCCCAGACATGTCCTACACTGACT-ATCATCTCAAAGCT
* * **
69695039 CGATACCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGCT
1 -GATGCCATGTCCCAGACAT-GTCCTACACTGACTATCATCTCAAAGCT
* * *
69695088 GATG-CATGTCCCAGACATGTCCTACGCT-AGCTCTCGTCTCAAAGCT
1 GATGCCATGTCCCAGACATGTCCTACACTGA-CTATCATCTCAAAGCT
*
69695134 GATGCCATGTCACAGACATG
1 GATGCCATGTCCCAGACATG
69695154 ATCTTATCTT
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
45 1 0.01
46 42 0.45
47 45 0.48
48 5 0.05
49 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGTCCTACACTGACTATCATCTCAAAGCT
Found at i:69699751 original size:75 final size:74
Alignment explanation
Indices: 69699656--69699805 Score: 264
Period size: 75 Copynumber: 2.0 Consensus size: 74
69699646 TGCCTAGAGG
69699656 ATTGGACACTTTATTACAAACTCAGTGGAATCTACTAGCATACTCATACGAGGTATCAAATCCAT
1 ATTGGACACTTTATTACAAACTCAGTGGAATCTACTAGCATACTCATACGAGGTATCAAATCCAT
69699721 ACAAATATA
66 ACAAATATA
* * *
69699730 ATTGGACACTTTTATTACAAACTTAGTGGAATCTACTAGTATACTCATACGAGGTATCAATTCCA
1 ATTGGACAC-TTTATTACAAACTCAGTGGAATCTACTAGCATACTCATACGAGGTATCAAATCCA
69699795 TACAAATATA
65 TACAAATATA
69699805 A
1 A
69699806 GAGTGAGTAG
Statistics
Matches: 72, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
74 9 0.12
75 63 0.88
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.31
Consensus pattern (74 bp):
ATTGGACACTTTATTACAAACTCAGTGGAATCTACTAGCATACTCATACGAGGTATCAAATCCAT
ACAAATATA
Found at i:69701568 original size:21 final size:20
Alignment explanation
Indices: 69701530--69701568 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
69701520 TCCTTAAAAA
* *
69701530 AGGGCACACGCCCTTGTGGT
1 AGGGCACACACCCATGTGGT
69701550 AGGGCAACACACCCATGTG
1 AGGGC-ACACACCCATGTG
69701569 ACCAACTCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.23, C:0.31, G:0.31, T:0.15
Consensus pattern (20 bp):
AGGGCACACACCCATGTGGT
Found at i:69702828 original size:46 final size:46
Alignment explanation
Indices: 69702710--69702925 Score: 204
Period size: 47 Copynumber: 4.6 Consensus size: 46
69702700 ATAAGGTGCT
* * *
69702710 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACAGGCTCTCATCTCG-AGGCC
* *
69702758 GATACCATGTCCCAGACATGTCTTACACAGGCT-TACGTCTCGAGGCC
1 GAT-GCATGTCCCAGACATGTCTTACACAGGCTCT-CATCTCGAGGCC
* * * * *
69702805 GATGCATGTCCCAGACATGTCTTACACTA-GCTGTCGTCTCAATGTC
1 GATGCATGTCCCAGACATGTCTTACAC-AGGCTCTCATCTCGAGGCC
* * ** *
69702851 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACAGGCTCTCATCTCGAGGCC
69702899 GATGCATGTCCCAGACATGTCTTACAC
1 GATGCATGTCCCAGACATGTCTTACAC
69702926 TAGCTCACAA
Statistics
Matches: 141, Mismatches: 19, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
46 50 0.35
47 52 0.37
48 39 0.28
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACAGGCTCTCATCTCGAGGCC
Found at i:69702899 original size:94 final size:93
Alignment explanation
Indices: 69702710--69702930 Score: 268
Period size: 94 Copynumber: 2.3 Consensus size: 93
69702700 ATAAGGTGCT
* *
69702710 GATGCCATGTCCCAGACATGGTCTTACACT-GACTATCATCTCGTAGCCGATACCATGTCCCAGA
1 GATG-CATGTCCCAGACAT-GTCTTACACTAG-CTATCATCTCATAGCCGATACCATGTCCCAAA
* **
69702774 CATGTCTTACACAGGCTTACGTCTCGAGGCC
63 CATGTCTTACACAGGCTTACATAACGAGGCC
* * * *
69702805 GATGCATGTCCCAGACATGTCTTACACTAGCTGTCGTCTCA-ATGTCGATGCCATGTCCCAAACA
1 GATGCATGTCCCAGACATGTCTTACACTAGCTATCATCTCATA-GCCGATACCATGTCCCAAACA
* *
69702869 TGGTCTTACACTGGCTCT-CATAACGTGGCC
65 T-GTCTTACACAGGCT-TACATAACGAGGCC
69702899 GATGCATGTCCCAGACATGTCTTACACTAGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCT
69702931 CACAAACAAA
Statistics
Matches: 111, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
92 1 0.01
93 37 0.33
94 68 0.61
95 5 0.05
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (93 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTATCATCTCATAGCCGATACCATGTCCCAAACAT
GTCTTACACAGGCTTACATAACGAGGCC
Found at i:69707043 original size:20 final size:20
Alignment explanation
Indices: 69707018--69707064 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
69707008 AATGAAAATG
69707018 TCAATGTCTTGATTGGACAT
1 TCAATGTCTTGATTGGACAT
69707038 TCAATGTCTTGATTGGACAT
1 TCAATGTCTTGATTGGACAT
*
69707058 TGAATGT
1 TCAATGT
69707065 TGATGAATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40
Consensus pattern (20 bp):
TCAATGTCTTGATTGGACAT
Found at i:69709989 original size:50 final size:50
Alignment explanation
Indices: 69709883--69710059 Score: 166
Period size: 50 Copynumber: 3.6 Consensus size: 50
69709873 TGTGAGGTTG
* *
69709883 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAACTGTGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGAAACTGTGATCA
* * *
69709933 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TC-AAA-TGGTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGAAACT-G-T-GATCA
* * * * *
69709983 TATGTGTAGTACTAAATGCAGGCTACTACGTGTACCGGATAA-T-TGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGA-AACTGTGATCA
* * *
69710032 CATGTTTAGTACTATGTACAGGCTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTA
69710060 TGCATACCAG
Statistics
Matches: 105, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
47 1 0.01
48 4 0.04
49 29 0.28
50 67 0.64
52 1 0.01
53 3 0.03
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGAAACTGTGATCA
Found at i:69710016 original size:26 final size:26
Alignment explanation
Indices: 69709936--69710016 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
69709926 GTGATCACGT
*
69709936 GTGTAGTACTAAGTGCAGGCTACTAC
1 GTGTAGTACTAAATGCAGGCTACTAC
* *
69709962 GTGTA-T-C-AAATGGTTAGG-T-CATAT
1 GTGTAGTACTAAAT-G-CAGGCTAC-TAC
69709986 GTGTAGTACTAAATGCAGGCTACTAC
1 GTGTAGTACTAAATGCAGGCTACTAC
69710012 GTGTA
1 GTGTA
69710017 CCGGATAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 16
0.67 0.08 0.25
Matches are distributed among these distances:
23 4 0.10
24 10 0.24
25 8 0.19
26 15 0.36
27 5 0.12
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (26 bp):
GTGTAGTACTAAATGCAGGCTACTAC
Found at i:69715513 original size:25 final size:24
Alignment explanation
Indices: 69715463--69715511 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
69715453 CTAAATGCTC
69715463 TCAAACCCCCTTCAATGGCAGATT
1 TCAAACCCCCTTCAATGGCAGATT
69715487 TCAAACCCCCTTCAATGGCAGATT
1 TCAAACCCCCTTCAATGGCAGATT
69715511 T
1 T
69715512 TCGGTAGTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.33, G:0.12, T:0.27
Consensus pattern (24 bp):
TCAAACCCCCTTCAATGGCAGATT
Found at i:69718855 original size:123 final size:123
Alignment explanation
Indices: 69718700--69718944 Score: 447
Period size: 123 Copynumber: 2.0 Consensus size: 123
69718690 TGAATTTCGT
69718700 ACCTCATATGAATTTCATACGTACCTGAGTCATTTAGCTCATTCACATATTCTTTCTCGACTTGA
1 ACCTCATATGAATTTCATACGTACCTGAGTCATTTAGCTCATTCACATATTCTTTCTCGACTTGA
69718765 A-TTTGCCTGTTGAACCATTTGGAATCATTAAGGATACTTAGAAATCACATAAGCTCGC
66 ATTTTGCC-GTTGAACCATTTGGAATCATTAAGGATACTTAGAAATCACATAAGCTCGC
* *
69718823 ACCTCGTATGAATTTCGTACGTACCTGAGTCATTTAGCTCATTCACATATTCTTTCTCGACTTGA
1 ACCTCATATGAATTTCATACGTACCTGAGTCATTTAGCTCATTCACATATTCTTTCTCGACTTGA
*
69718888 ATTTTTCCGTTGAACCATTTGGAATCATTAAGGATACTTAGAAATCACATAAGCTCG
66 ATTTTGCCGTTGAACCATTTGGAATCATTAAGGATACTTAGAAATCACATAAGCTCG
69718945 TACAATGCCA
Statistics
Matches: 118, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
123 113 0.96
124 5 0.04
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.36
Consensus pattern (123 bp):
ACCTCATATGAATTTCATACGTACCTGAGTCATTTAGCTCATTCACATATTCTTTCTCGACTTGA
ATTTTGCCGTTGAACCATTTGGAATCATTAAGGATACTTAGAAATCACATAAGCTCGC
Found at i:69719621 original size:31 final size:28
Alignment explanation
Indices: 69719592--69719650 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 28
69719582 TTTTCACTTA
69719592 TTTCACAATTTAACCCCTCAATTTACACT
1 TTTCACAATTTAACCCCT-AATTTACACT
* * *
69719621 TTTCTCAATTTAATCCCTAATTGACA-T
1 TTTCACAATTTAACCCCTAATTTACACT
69719648 TTT
1 TTT
69719651 GTAAAAAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 4 0.15
28 7 0.26
29 16 0.59
ACGTcount: A:0.29, C:0.25, G:0.02, T:0.44
Consensus pattern (28 bp):
TTTCACAATTTAACCCCTAATTTACACT
Found at i:69723382 original size:30 final size:29
Alignment explanation
Indices: 69723288--69723389 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
69723278 TATAGTGAAT
* * *
69723288 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
69723317 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
69723345 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
69723375 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
69723390 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:69731236 original size:30 final size:29
Alignment explanation
Indices: 69731142--69731243 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
69731132 TATAGTGAAT
* * *
69731142 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
69731171 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
69731199 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
69731229 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
69731244 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:69732992 original size:29 final size:29
Alignment explanation
Indices: 69732958--69733060 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
69732948 TAATCAGCCG
** *
69732958 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
69732987 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
69733016 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
69733045 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
69733061 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:69738190 original size:40 final size:40
Alignment explanation
Indices: 69738082--69738251 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
69738072 CGGGATTTAA
* * * * *
69738082 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
69738122 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69738162 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69738202 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69738242 CCGGATATAT
1 CCGGATATAT
69738252 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:69746282 original size:40 final size:40
Alignment explanation
Indices: 69746174--69746343 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
69746164 CGGGATTTAA
* * * * *
69746174 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
69746214 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69746254 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69746294 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69746334 CCGGATATAT
1 CCGGATATAT
69746344 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:69753153 original size:13 final size:13
Alignment explanation
Indices: 69753135--69753159 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69753125 TAATTATCAC
69753135 TTAATTAATATTT
1 TTAATTAATATTT
69753148 TTAATTAATATT
1 TTAATTAATATT
69753160 AGAGTTAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTAATTAATATTT
Found at i:69753623 original size:25 final size:27
Alignment explanation
Indices: 69753595--69753650 Score: 80
Period size: 25 Copynumber: 2.1 Consensus size: 27
69753585 TACCCTTAAG
69753595 AATAATAGATAAAAT-ATATT-ATAAA
1 AATAATAGATAAAATCATATTAATAAA
* *
69753620 AATAGTAGATAAAATCATATTAATAAT
1 AATAATAGATAAAATCATATTAATAAA
69753647 AATA
1 AATA
69753651 TTTTTTGGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 14 0.52
26 5 0.19
27 8 0.30
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (27 bp):
AATAATAGATAAAATCATATTAATAAA
Found at i:69753664 original size:19 final size:19
Alignment explanation
Indices: 69753640--69753678 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
69753630 AAAATCATAT
69753640 TAATAATAATATTTT-TTGG
1 TAATAA-AATATTTTATTGG
*
69753659 TAATAAAATTTTTTATTGG
1 TAATAAAATATTTTATTGG
69753678 T
1 T
69753679 TTGAACTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.36, C:0.00, G:0.10, T:0.54
Consensus pattern (19 bp):
TAATAAAATATTTTATTGG
Found at i:69759720 original size:47 final size:47
Alignment explanation
Indices: 69759584--69759853 Score: 387
Period size: 47 Copynumber: 5.7 Consensus size: 47
69759574 GATTTTACGC
* *
69759584 GATGAATGTGAATGTGTATAAATATGAGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTAT--ATATGTGATAAGGCCTAATGGCCGATGT
69759633 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGT
69759682 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* * * *
69759729 GATAAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* * * * *
69759776 GATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* *
69759823 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAAGTGTATATATGTGATAAG
69759854 TCCCGAAGGG
Statistics
Matches: 205, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
47 144 0.70
49 58 0.28
51 3 0.01
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
Found at i:69764010 original size:14 final size:14
Alignment explanation
Indices: 69763991--69764020 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
69763981 TTAAAAAATG
69763991 AATTAATATTTTAA
1 AATTAATATTTTAA
*
69764005 AATTAATTTTTTAA
1 AATTAATATTTTAA
69764019 AA
1 AA
69764021 AAATAAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AATTAATATTTTAA
Found at i:69765776 original size:18 final size:18
Alignment explanation
Indices: 69765755--69765790 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
69765745 ATCTCTTCTC
*
69765755 TTTTGATAACCTTTTCTAT
1 TTTTG-TAACCATTTCTAT
69765774 TTTTGTAACCATTTCTA
1 TTTTGTAACCATTTCTA
69765791 CTTCGATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.22, C:0.17, G:0.06, T:0.56
Consensus pattern (18 bp):
TTTTGTAACCATTTCTAT
Found at i:69766660 original size:16 final size:16
Alignment explanation
Indices: 69766639--69766670 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
69766629 CTAGATCGGC
69766639 AAAAGTCGAAAAGCCG
1 AAAAGTCGAAAAGCCG
69766655 AAAAGTCGAAAAGCCG
1 AAAAGTCGAAAAGCCG
69766671 GCATTTATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.19, G:0.25, T:0.06
Consensus pattern (16 bp):
AAAAGTCGAAAAGCCG
Found at i:69780403 original size:143 final size:141
Alignment explanation
Indices: 69780195--69780489 Score: 563
Period size: 143 Copynumber: 2.1 Consensus size: 141
69780185 TGAGTTAAAT
*
69780195 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
69780260 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTA--TGTGT
69780325 GTGTGCATGAGTA
129 GTGTGCATGAGTA
69780338 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
69780403 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
69780468 GTGCATGAGTA
131 GTGCATGAGTA
69780479 TTCGGCCATGC
1 TTCGGCCATGC
69780490 TATAGAATTT
Statistics
Matches: 151, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 29 0.19
143 122 0.81
ACGTcount: A:0.21, C:0.11, G:0.29, T:0.39
Consensus pattern (141 bp):
TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
GTGCATGAGTA
Found at i:69781166 original size:29 final size:29
Alignment explanation
Indices: 69781133--69781264 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
69781123 GTGACGAGAT
*
69781133 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
69781162 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
69781191 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
69781220 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
69781249 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
69781265 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:69795110 original size:23 final size:23
Alignment explanation
Indices: 69795027--69795110 Score: 80
Period size: 24 Copynumber: 3.5 Consensus size: 23
69795017 ACACATCTTA
69795027 TATGAGCTTACCGATATATTAGCTCG
1 TATGAGCTTACC-AT-T-TTAGCTCG
* * * *
69795053 TAAGAGCTTACTATTTTCATCTCA
1 TATGAGCTTACCATTTT-AGCTCG
69795077 T-TGGAGCTTACCATTTTAGCTCG
1 TAT-GAGCTTACCATTTTAGCTCG
69795100 TATGAGCTTAC
1 TATGAGCTTAC
69795111 TGTTCAGCTC
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
23 15 0.32
24 20 0.43
25 2 0.04
26 10 0.21
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (23 bp):
TATGAGCTTACCATTTTAGCTCG
Found at i:69801950 original size:40 final size:40
Alignment explanation
Indices: 69801905--69802034 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
69801895 CGGAATACAA
69801905 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
69801945 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
69801985 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
69802025 CCGGATATAA
1 CCGGATATAA
69802035 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:69802049 original size:40 final size:40
Alignment explanation
Indices: 69801905--69802068 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
69801895 CGGAATACAA
* **
69801905 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
69801945 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
69801985 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
69802025 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
69802065 CCGG
1 CCGG
69802069 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:69810007 original size:40 final size:40
Alignment explanation
Indices: 69809962--69810091 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
69809952 CGGAATACAA
69809962 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
69810002 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
69810042 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
69810082 CCGGATATAA
1 CCGGATATAA
69810092 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:69810106 original size:40 final size:40
Alignment explanation
Indices: 69809962--69810124 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
69809952 CGGAATACAA
* **
69809962 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
69810002 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
69810042 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * *
69810082 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
69810121 CCGG
1 CCGG
69810125 GTATCATTCA
Statistics
Matches: 100, Mismatches: 20, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
39 11 0.11
40 89 0.89
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:69813003 original size:27 final size:27
Alignment explanation
Indices: 69812964--69813017 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
69812954 GTAAGACCTT
69812964 GTCTAGGACAGTGGCATCAATCTGTGA
1 GTCTAGGACAGTGGCATCAATCTGTGA
* *
69812991 GTCTAGGATAGTGGCATCGATCTGTGA
1 GTCTAGGACAGTGGCATCAATCTGTGA
69813018 CGACATGTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (27 bp):
GTCTAGGACAGTGGCATCAATCTGTGA
Found at i:69818366 original size:5 final size:5
Alignment explanation
Indices: 69818358--69818382 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
69818348 ATTTGGTGAG
69818358 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
69818383 TGAGAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:69821331 original size:63 final size:62
Alignment explanation
Indices: 69821229--69821346 Score: 148
Period size: 63 Copynumber: 1.9 Consensus size: 62
69821219 TTGGTACTTG
** *
69821229 TACTTTCATAAAATGTTTAATATAGTACCTAACCTATCAATATGTATTTTATTATGACACATT
1 TACTTTCATAAAATGTCCAATATAGTACCTAACCAATCAA-ATGTATTTTATTATGACACATT
* * * *
69821292 TACTTTCATAAAATGTCCAATGTGGTACCTGGA-CAATCAAGTGTATTTTATTATG
1 TACTTTCATAAAATGTCCAATATAGTACCT-AACCAATCAAATGTATTTTATTATG
69821347 GTACCTGGTG
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
62 14 0.30
63 32 0.68
64 1 0.02
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.41
Consensus pattern (62 bp):
TACTTTCATAAAATGTCCAATATAGTACCTAACCAATCAAATGTATTTTATTATGACACATT
Found at i:69821850 original size:29 final size:31
Alignment explanation
Indices: 69821818--69821880 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 31
69821808 CATAGTCTAG
*
69821818 ATACAACATTGAACAT-TT-TCAAAGTACAA
1 ATACAACATTGAACATGTTATAAAAGTACAA
* * *
69821847 ATACCATATTGAATATGTTATAAAAGTACAA
1 ATACAACATTGAACATGTTATAAAAGTACAA
69821878 ATA
1 ATA
69821881 TCATAATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 13 0.46
30 2 0.07
31 13 0.46
ACGTcount: A:0.49, C:0.13, G:0.08, T:0.30
Consensus pattern (31 bp):
ATACAACATTGAACATGTTATAAAAGTACAA
Found at i:69822106 original size:6 final size:6
Alignment explanation
Indices: 69822095--69822119 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
69822085 AGATCAATTA
69822095 TTTATT TTTATT TTTATT TTTATT T
1 TTTATT TTTATT TTTATT TTTATT T
69822120 AATCAGCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTATT
Found at i:69823352 original size:18 final size:19
Alignment explanation
Indices: 69823317--69823353 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
69823307 TTAAGTTTCA
*
69823317 CTTCCTTTGCTCCACTTTT
1 CTTCCTTTGCTACACTTTT
69823336 CTTCCTTT-CTACACTTTT
1 CTTCCTTTGCTACACTTTT
69823354 GTCGCCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.08, C:0.35, G:0.03, T:0.54
Consensus pattern (19 bp):
CTTCCTTTGCTACACTTTT
Found at i:69824359 original size:25 final size:25
Alignment explanation
Indices: 69824331--69824383 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 25
69824321 AGAAACTTCT
*
69824331 ACAAAATTTTGAGTAAAAAGTGCAA
1 ACAAAAGTTTGAGTAAAAAGTGCAA
* *
69824356 AC-AAGGTTTGAGTAAAAAGTGTAA
1 ACAAAAGTTTGAGTAAAAAGTGCAA
69824380 ACAA
1 ACAA
69824384 GGGTCACATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 21 0.88
25 3 0.12
ACGTcount: A:0.51, C:0.08, G:0.19, T:0.23
Consensus pattern (25 bp):
ACAAAAGTTTGAGTAAAAAGTGCAA
Found at i:69824365 original size:24 final size:24
Alignment explanation
Indices: 69824338--69824385 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
69824328 TCTACAAAAT
69824338 TTTGAGTAAAAAGTGCAAACAAGG
1 TTTGAGTAAAAAGTGCAAACAAGG
*
69824362 TTTGAGTAAAAAGTGTAAACAAGG
1 TTTGAGTAAAAAGTGCAAACAAGG
69824386 GTCACATGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.46, C:0.06, G:0.25, T:0.23
Consensus pattern (24 bp):
TTTGAGTAAAAAGTGCAAACAAGG
Found at i:69827870 original size:11 final size:10
Alignment explanation
Indices: 69827854--69827885 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
69827844 TGCATGTGTG
69827854 AAAAAAAATA
1 AAAAAAAATA
69827864 AAAAAAAATA
1 AAAAAAAATA
69827874 AAAAAAAA-A
1 AAAAAAAATA
69827883 AAA
1 AAA
69827886 TTAATGCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.94, C:0.00, G:0.00, T:0.06
Consensus pattern (10 bp):
AAAAAAAATA
Found at i:69830089 original size:39 final size:39
Alignment explanation
Indices: 69830044--69830164 Score: 197
Period size: 39 Copynumber: 3.1 Consensus size: 39
69830034 ATTCAAGACA
*
69830044 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
* * *
69830083 CTGGAAATGTATCCGGGCTAAAGTGCCACGGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
*
69830122 TTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
69830161 CTGG
1 CTGG
69830165 TAATATAATT
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.20, C:0.22, G:0.32, T:0.26
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
Found at i:69832421 original size:28 final size:27
Alignment explanation
Indices: 69832389--69832489 Score: 112
Period size: 28 Copynumber: 3.6 Consensus size: 27
69832379 GTGAACATAG
69832389 GCACTGTGTGTGCGAGTTCCGTAACTGA
1 GCACTGTGTGTGCGAGTT-CGTAACTGA
* ***
69832417 GCACTGTGTGTGCGAGATCGATTGTTGA
1 GCACTGTGTGTGCGAGTTCG-TAACTGA
* *
69832445 GGCACTGTGTGTGCGAGTTTTGTAACCGA
1 -GCACTGTGTGTGCGAG-TTCGTAACTGA
69832474 GCACTGTGTGTGCGAG
1 GCACTGTGTGTGCGAG
69832490 ATCAATTATT
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
27 2 0.03
28 37 0.62
29 19 0.32
30 2 0.03
ACGTcount: A:0.17, C:0.18, G:0.36, T:0.30
Consensus pattern (27 bp):
GCACTGTGTGTGCGAGTTCGTAACTGA
Found at i:69832456 original size:57 final size:57
Alignment explanation
Indices: 69832387--69832516 Score: 188
Period size: 57 Copynumber: 2.2 Consensus size: 57
69832377 AAGTGAACAT
* * *
69832387 AGGCACTGTGTGTGCGAGTTCCGTAACTGAGCACTGTGTGTGCGAGATCGATTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCAATTATTG
**
69832444 AGGCACTGTGTGTGCGAGTTTTGTAACCGAGCACTGTGTGTGCGAGATCAATTATTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCAATTATTG
*
69832501 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
69832517 TAATGAGATC
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 58 0.89
59 7 0.11
ACGTcount: A:0.19, C:0.16, G:0.35, T:0.30
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCAATTATTG
Found at i:69835654 original size:15 final size:15
Alignment explanation
Indices: 69835634--69835667 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
69835624 AATGTATCCG
69835634 GGCTAAAGTCCCGCA
1 GGCTAAAGTCCCGCA
69835649 GGCTAAAGTCCCGCA
1 GGCTAAAGTCCCGCA
69835664 GGCT
1 GGCT
69835668 TCGTGCTGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.24, C:0.32, G:0.29, T:0.15
Consensus pattern (15 bp):
GGCTAAAGTCCCGCA
Done.