Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 246 of 444
Found at i:69835680 original size:54 final size:54
Alignment explanation
Indices: 69835595--69835706 Score: 188
Period size: 54 Copynumber: 2.1 Consensus size: 54
69835585 AATGTATCCG
* *
69835595 GGCTAAAGTCCTGCAGGCTTTGTGCTAGAAATGTATCCGGGCTAAAGTCCCGCA
1 GGCTAAAGTCCCGCAGGCTTCGTGCTAGAAATGTATCCGGGCTAAAGTCCCGCA
* *
69835649 GGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTTCCGCA
1 GGCTAAAGTCCCGCAGGCTTCGTGCTAGAAATGTATCCGGGCTAAAGTCCCGCA
69835703 GGCT
1 GGCT
69835707 TTGTGCTGGT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (54 bp):
GGCTAAAGTCCCGCAGGCTTCGTGCTAGAAATGTATCCGGGCTAAAGTCCCGCA
Found at i:69837436 original size:39 final size:40
Alignment explanation
Indices: 69837382--69837558 Score: 218
Period size: 40 Copynumber: 4.5 Consensus size: 40
69837372 AAACCAAGTA
* * * *
69837382 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
69837421 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
69837461 CCTTCGAGAGTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
69837501 CCTTCGGG-CTTAGCCCAGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
69837540 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
69837559 TTATCATCCA
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 46 0.38
40 73 0.61
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:69837535 original size:79 final size:80
Alignment explanation
Indices: 69837392--69837558 Score: 216
Period size: 79 Copynumber: 2.1 Consensus size: 80
69837382 CCTTCGGAAT
* * ** *
69837392 TTAG-CCGGATATAGCTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
1 TTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTAGCAC
*
69837456 AAATGCCTTCGAGAG
66 AAATGCCTTCGAGAC
*
69837471 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGG-CTTAGCCCAGAAT-TAGTCACTAGC
1 TTAGCCCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCC-GAATATAGTAACTAGC
*
69837533 ACAAATGCCTTCGGGAC
64 ACAAATGCCTTCGAGAC
69837550 TTAGCCCGG
1 TTAGCCCGG
69837559 TTATCATCCA
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
79 46 0.60
80 31 0.40
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
TTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTAGCAC
AAATGCCTTCGAGAC
Found at i:69840239 original size:21 final size:21
Alignment explanation
Indices: 69840213--69840254 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
69840203 CATTGAAGGG
*
69840213 GGTCAACACAACCATGTGGGC
1 GGTCAAAACAACCATGTGGGC
**
69840234 GGTCAAAACCCCCATGTGGGC
1 GGTCAAAACAACCATGTGGGC
69840255 CAGGGACATG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.26, C:0.31, G:0.29, T:0.14
Consensus pattern (21 bp):
GGTCAAAACAACCATGTGGGC
Found at i:69843847 original size:28 final size:28
Alignment explanation
Indices: 69843793--69843848 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
69843783 CTAATGCCTC
***
69843793 AATTATTAATACCATTATTATTTAATTT
1 AATTATTAATACCATTATTAACAAATTT
* *
69843821 AATTATTATTATCATTATTAACAAATTT
1 AATTATTAATACCATTATTAACAAATTT
69843849 TTTATTTTAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (28 bp):
AATTATTAATACCATTATTAACAAATTT
Found at i:69853639 original size:27 final size:28
Alignment explanation
Indices: 69853602--69853741 Score: 184
Period size: 27 Copynumber: 5.2 Consensus size: 28
69853592 AGCATGGCTG
* *
69853602 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
69853628 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
69853656 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
69853683 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
69853710 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
69853737 CCAGA
1 CCAGA
69853742 ACGCTTCCTC
Statistics
Matches: 106, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
26 5 0.05
27 84 0.79
28 17 0.16
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:69855397 original size:26 final size:26
Alignment explanation
Indices: 69855361--69855470 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
69855351 CATGAAATTC
69855361 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
69855387 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
69855413 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
69855439 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
69855465 TTATCA
1 TTATCA
69855471 ATTTGTACCA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 79 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:69860214 original size:21 final size:21
Alignment explanation
Indices: 69860190--69860229 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
69860180 TCACACAGGC
*
69860190 GTGTGCCTTAGTCACACGGTT
1 GTGTGCCTTAGCCACACGGTT
**
69860211 GTGTTTCTTAGCCACACGG
1 GTGTGCCTTAGCCACACGG
69860230 GCATGTAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.15, C:0.25, G:0.28, T:0.33
Consensus pattern (21 bp):
GTGTGCCTTAGCCACACGGTT
Found at i:69876717 original size:2 final size:2
Alignment explanation
Indices: 69876710--69876738 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
69876700 AGACTATTTC
69876710 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
69876739 GACATTTCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:69877186 original size:41 final size:41
Alignment explanation
Indices: 69877141--69877304 Score: 222
Period size: 41 Copynumber: 4.0 Consensus size: 41
69877131 AAATCCTAGT
* * * *
69877141 ATAATACACCGGCACAGAGCCTGCTAGGCAATAGGCCTGAA
1 ATAATACACCGGCATAAAGCCTGCTAGCCAATAAGCCTGAA
*
69877182 ATAATACACCGGCATAAAGCCTGCTAGCCAATAAGCCTGAC
1 ATAATACACCGGCATAAAGCCTGCTAGCCAATAAGCCTGAA
* *
69877223 ATAATTCACCGGCATAAAGCCTGCTAGCCAATAAGCCTGAT
1 ATAATACACCGGCATAAAGCCTGCTAGCCAATAAGCCTGAA
* * *
69877264 ATAATTCACCGGCATAAAGCCTACTAGGC-ATAAAGCCTGAA
1 ATAATACACCGGCATAAAGCCTGCTAGCCAAT-AAGCCTGAA
69877305 TATCACTGAT
Statistics
Matches: 112, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
40 2 0.02
41 110 0.98
ACGTcount: A:0.36, C:0.27, G:0.19, T:0.18
Consensus pattern (41 bp):
ATAATACACCGGCATAAAGCCTGCTAGCCAATAAGCCTGAA
Found at i:69892524 original size:27 final size:27
Alignment explanation
Indices: 69892462--69892562 Score: 114
Period size: 27 Copynumber: 3.7 Consensus size: 27
69892452 CTGATTGATG
* *
69892462 AAAATGACAATTTTGCCCTTATGTGGT
1 AAAATGACTATTTTGCCCTTATATGGT
69892489 AAAATGACTATTTTGCCCTTATATGGT
1 AAAATGACTATTTTGCCCTTATATGGT
** *
69892516 AAAATGACTGA-AATGCCCTTACATGGT
1 AAAATGACT-ATTTTGCCCTTATATGGT
* *
69892543 AAATTGACTGTTTTGTCCCT
1 AAAATGACTATTTTG-CCCT
69892563 ATGTGATATA
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
27 57 0.92
28 5 0.08
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.37
Consensus pattern (27 bp):
AAAATGACTATTTTGCCCTTATATGGT
Found at i:69892904 original size:18 final size:18
Alignment explanation
Indices: 69892881--69892915 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
69892871 ATTACATATC
69892881 TGCACTAATTACTGTTAT
1 TGCACTAATTACTGTTAT
**
69892899 TGCACTGGTTACTGTTA
1 TGCACTAATTACTGTTA
69892916 CTACAATAGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.43
Consensus pattern (18 bp):
TGCACTAATTACTGTTAT
Found at i:69896354 original size:40 final size:40
Alignment explanation
Indices: 69896299--69896468 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
69896289 AACATTGGAA
69896299 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
69896339 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
69896379 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
69896418 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
69896459 CTATATCCGG
1 ATATATCCGG
69896469 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:69904449 original size:40 final size:40
Alignment explanation
Indices: 69904394--69904563 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
69904384 AACATTGGAA
69904394 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
69904434 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
69904474 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
69904513 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
69904554 CTATATCCGG
1 ATATATCCGG
69904564 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:69908271 original size:13 final size:16
Alignment explanation
Indices: 69908236--69908272 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
69908226 ATACAAAATA
69908236 GTAGTAGCACTTTGGT
1 GTAGTAGCACTTTGGT
69908252 GTAGTAGCACTTTGGT
1 GTAGTAGCACTTTGGT
69908268 GTAGT
1 GTAGT
69908273 CCTTCTAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.19, C:0.11, G:0.32, T:0.38
Consensus pattern (16 bp):
GTAGTAGCACTTTGGT
Found at i:69909966 original size:26 final size:26
Alignment explanation
Indices: 69909911--69909980 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 26
69909901 GGTGTGATAT
* * *
69909911 GAAATAAAGTCATTGTGGCATATGAT
1 GAAAGAAAGTCTTTGTGGCATATGAC
*
69909937 GAAAGAAAGTCTTTGTGGCGTAAT-AC
1 GAAAGAAAGTCTTTGTGGCAT-ATGAC
* *
69909963 GAAAGAATGCCTTTGTGG
1 GAAAGAAAGTCTTTGTGG
69909981 AAAACTCCTT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
26 35 0.95
27 2 0.05
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (26 bp):
GAAAGAAAGTCTTTGTGGCATATGAC
Found at i:69916441 original size:28 final size:28
Alignment explanation
Indices: 69916409--69916467 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
69916399 CCTCGAAGAG
* *
69916409 TAAGTAAGAAAATTCGTATCATTGTTGA
1 TAAGTAAGAAAATTCATATCATTATTGA
*
69916437 TAAGTAAGGAAATTCATATCATTATTGA
1 TAAGTAAGAAAATTCATATCATTATTGA
69916465 TAA
1 TAA
69916468 ATATTGGTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.36
Consensus pattern (28 bp):
TAAGTAAGAAAATTCATATCATTATTGA
Found at i:69921440 original size:26 final size:26
Alignment explanation
Indices: 69921396--69921466 Score: 83
Period size: 26 Copynumber: 2.7 Consensus size: 26
69921386 ACACGATAGA
*
69921396 TAAAGTAAGCCTTTT-TGGCGTAAT-T
1 TAAAGAAAG-CTTTTGTGGCGTAATAT
69921421 TGAAAGAAAGCTTTTGTGGCGTAATAT
1 T-AAAGAAAGCTTTTGTGGCGTAATAT
* *
69921448 TAAAGAATGTTTTTGTGGC
1 TAAAGAAAGCTTTTGTGGC
69921467 AAACTCATAA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
25 6 0.15
26 32 0.80
27 2 0.05
ACGTcount: A:0.30, C:0.08, G:0.24, T:0.38
Consensus pattern (26 bp):
TAAAGAAAGCTTTTGTGGCGTAATAT
Found at i:69923225 original size:50 final size:50
Alignment explanation
Indices: 69923148--69923285 Score: 224
Period size: 50 Copynumber: 2.7 Consensus size: 50
69923138 TTAATTTAAA
* * *
69923148 GATGCAAACTTTAACTAACATGGGAGTTACATAATGGATA-TCATTATTTAT
1 GATGCATAC-TTAACTAACATGAGAGTTACATAATGCA-AGTCATTATTTAT
69923199 GATGCATACTTAACTAACATGAGAGTTACATAATGCAAGTCATTATTTAT
1 GATGCATACTTAACTAACATGAGAGTTACATAATGCAAGTCATTATTTAT
69923249 GATGCATACTTAACTAACATGAGAGTTACATAATGCA
1 GATGCATACTTAACTAACATGAGAGTTACATAATGCA
69923286 TGACTTTATT
Statistics
Matches: 83, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
49 1 0.01
50 74 0.89
51 8 0.10
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (50 bp):
GATGCATACTTAACTAACATGAGAGTTACATAATGCAAGTCATTATTTAT
Found at i:69923295 original size:50 final size:50
Alignment explanation
Indices: 69923120--69923295 Score: 221
Period size: 50 Copynumber: 3.5 Consensus size: 50
69923110 TGAACAAATC
* * * * *
69923120 AGTTACTTAATGCATGGC-TTAATTTAAAGATGCAAACTTTAACTAACATGGG
1 AGTTACATAATGCATGACATT-ATTT-ATGATGCATAC-TTAACTAACATGAG
*
69923172 AGTTACATAATGGAT-ATCATTATTTATGATGCATACTTAACTAACATGAG
1 AGTTACATAATGCATGA-CATTATTTATGATGCATACTTAACTAACATGAG
* *
69923222 AGTTACATAATGCAAGTCATTATTTATGATGCATACTTAACTAACATGAG
1 AGTTACATAATGCATGACATTATTTATGATGCATACTTAACTAACATGAG
*
69923272 AGTTACATAATGCATGACTTTATT
1 AGTTACATAATGCATGACATTATT
69923296 AAATGCAGAA
Statistics
Matches: 109, Mismatches: 12, Indels: 8
0.84 0.09 0.06
Matches are distributed among these distances:
50 80 0.73
51 9 0.08
52 18 0.17
53 2 0.02
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (50 bp):
AGTTACATAATGCATGACATTATTTATGATGCATACTTAACTAACATGAG
Found at i:69931607 original size:43 final size:42
Alignment explanation
Indices: 69931521--69931638 Score: 128
Period size: 43 Copynumber: 2.8 Consensus size: 42
69931511 ATACCAATGT
* * *** *
69931521 CATATCCCAGATATGATCTTACATGTAATCTCATATCGATGC
1 CATAGCCCAGATATGGTCTTACACAAAATCTCACATCGATGC
* * * *
69931563 CAATAGCCTAGCTATGGTTTTACACAAAATCTCACATCGCTGC
1 C-ATAGCCCAGATATGGTCTTACACAAAATCTCACATCGATGC
*
69931606 CATATCCCAGATATGGTCTTACACAAAATCTCA
1 CATAGCCCAGATATGGTCTTACACAAAATCTCA
69931639 TACTAAGGTC
Statistics
Matches: 61, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
42 29 0.48
43 32 0.52
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (42 bp):
CATAGCCCAGATATGGTCTTACACAAAATCTCACATCGATGC
Found at i:69931629 original size:42 final size:42
Alignment explanation
Indices: 69931521--69931671 Score: 142
Period size: 42 Copynumber: 3.6 Consensus size: 42
69931511 ATACCAATGT
* *** *
69931521 CATATCCCAGATATGATCTTACATGTAATCTCATATCGATGC
1 CATATCCCAGATATGGTCTTACACAAAATCTCACATCGATGC
* * * * *
69931563 CAATAGCCTAGCTATGGTTTTACACAAAATCTCACATCGCTGC
1 C-ATATCCCAGATATGGTCTTACACAAAATCTCACATCGATGC
* * * *
69931606 CATATCCCAGATATGGTCTTACACAAAATCTCATA-CTAAGGT
1 CATATCCCAGATATGGTCTTACACAAAATCTCACATC-GATGC
*
69931648 CATATCTCAGATATGGTCTTACAC
1 CATATCCCAGATATGGTCTTACAC
69931672 GTAGTCTTAG
Statistics
Matches: 87, Mismatches: 20, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
41 1 0.01
42 54 0.62
43 32 0.37
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACAAAATCTCACATCGATGC
Found at i:69940860 original size:42 final size:43
Alignment explanation
Indices: 69940761--69940907 Score: 156
Period size: 42 Copynumber: 3.5 Consensus size: 43
69940751 CAAGCCATCT
*** * * *
69940761 CCTAGATATGGTCTTACATGTAATCTCGTATCGATGCCAATAG
1 CCTAGATATGGTCTTACACAAAATCTCATATCGATGACAATAA
*
69940804 CCTAGCTATGGTCTTACACAAAATCTCATATCGAT-ACAATAA
1 CCTAGATATGGTCTTACACAAAATCTCATATCGATGACAATAA
* * *
69940846 CCTAGATATTGTCTTACACAAAATCTCATA-CTGATG-CCATAT
1 CCTAGATATGGTCTTACACAAAATCTCATATC-GATGACAATAA
* *
69940888 CCCAAATATGGTCTTACACA
1 CCTAGATATGGTCTTACACA
69940908 TAGTCTCAGT
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
41 1 0.01
42 57 0.65
43 30 0.34
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (43 bp):
CCTAGATATGGTCTTACACAAAATCTCATATCGATGACAATAA
Found at i:69943180 original size:38 final size:38
Alignment explanation
Indices: 69943124--69943196 Score: 119
Period size: 38 Copynumber: 1.9 Consensus size: 38
69943114 TTCTTATTAT
* *
69943124 GCCTGTAATTTAACCTTTGTTAATGATACAATAGGGTA
1 GCCTGCAATTTAACCTTTGTTAATGATAAAATAGGGTA
*
69943162 GCCTGCAATTTAATCTTTGTTAATGATAAAATAGG
1 GCCTGCAATTTAACCTTTGTTAATGATAAAATAGG
69943197 TTGCTATGTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (38 bp):
GCCTGCAATTTAACCTTTGTTAATGATAAAATAGGGTA
Found at i:69944746 original size:29 final size:29
Alignment explanation
Indices: 69944689--69944761 Score: 103
Period size: 29 Copynumber: 2.6 Consensus size: 29
69944679 TACCTGTATC
*
69944689 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
* *
69944717 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
*
69944746 TGGCCCGTTAAGCCCA
1 TGGCCCATTAAGCCCA
69944762 GTAAAATTCA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 14 0.36
29 25 0.64
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (29 bp):
TGGCCCATTAAGCCCAAATCACATTCATA
Found at i:69945011 original size:16 final size:16
Alignment explanation
Indices: 69944985--69945027 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
69944975 GTAGCCAAAC
*
69944985 TTTCAGCTTTTCAGCA
1 TTTCGGCTTTTCAGCA
* **
69945001 TTTTGGCTTTTTGGCA
1 TTTCGGCTTTTCAGCA
69945017 TTTCGGCTTTT
1 TTTCGGCTTTT
69945028 GCCAATACAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.09, C:0.19, G:0.19, T:0.53
Consensus pattern (16 bp):
TTTCGGCTTTTCAGCA
Found at i:69946140 original size:15 final size:16
Alignment explanation
Indices: 69946098--69946144 Score: 85
Period size: 16 Copynumber: 2.9 Consensus size: 16
69946088 ACAAAGAAAG
*
69946098 TTCGAGATTTTTGGGT
1 TTCGGGATTTTTGGGT
69946114 TTCGGGATTTTTGGGT
1 TTCGGGATTTTTGGGT
69946130 TTCGGGATTTTTGGG
1 TTCGGGATTTTTGGG
69946145 GAGTTACATT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.09, C:0.06, G:0.36, T:0.49
Consensus pattern (16 bp):
TTCGGGATTTTTGGGT
Found at i:69950139 original size:29 final size:29
Alignment explanation
Indices: 69950100--69950178 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
69950090 CTTAACAATC
*
69950100 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
69950130 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
* *
69950159 AGCCCACACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
69950179 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 37 0.86
30 3 0.07
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:69950836 original size:2 final size:2
Alignment explanation
Indices: 69950818--69950855 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
69950808 TGATGGCCGA
* *
69950818 AT AT GT AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
69950856 CAACTATACT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69958238 original size:29 final size:29
Alignment explanation
Indices: 69958199--69958277 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
69958189 CTTAATAATC
*
69958199 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
69958229 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
69958258 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
69958278 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:69967914 original size:31 final size:31
Alignment explanation
Indices: 69967843--69967916 Score: 103
Period size: 31 Copynumber: 2.4 Consensus size: 31
69967833 ACGGTTACTA
*
69967843 GGCCGAAGCCTTTTCATAAATCATATCACTG
1 GGCCGAAGCCTTATCATAAATCATATCACTG
* *
69967874 GGCCAAAGCCTTATCATAAATCATATCTCTG
1 GGCCGAAGCCTTATCATAAATCATATCACTG
**
69967905 GGTTGAAGCCTT
1 GGCCGAAGCCTT
69967917 TACTGTAAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (31 bp):
GGCCGAAGCCTTATCATAAATCATATCACTG
Found at i:69968212 original size:26 final size:25
Alignment explanation
Indices: 69968135--69968218 Score: 132
Period size: 25 Copynumber: 3.3 Consensus size: 25
69968125 CCTTTTTAAT
69968135 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
**
69968160 AACTGGGGCAAAGCCCTTTTCAATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
69968185 AACTGGGGCATAAGCCCTTTTTGGTA
1 AACTGGGGCA-AAGCCCTTTTCGGTA
69968211 AACTGGGG
1 AACTGGGG
69968219 TGTAACGCCC
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
25 33 0.62
26 20 0.38
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:69969299 original size:19 final size:20
Alignment explanation
Indices: 69969275--69969312 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
69969265 GGTACCACCA
69969275 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
69969294 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
69969313 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:69969699 original size:42 final size:42
Alignment explanation
Indices: 69969630--69969866 Score: 345
Period size: 42 Copynumber: 5.6 Consensus size: 42
69969620 AAAAAAACGG
*
69969630 CGCTAAAGGTCAAGGCTTTTAGTGGCGTTTGTGGGAAAAGCGC
1 CGCTAAAGG-CAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGC
*
69969673 CGCTAAAGGCAAGGCTTTTAGCGGCGTTTGT-GGAAAAGAGC
1 CGCTAAAGGCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGC
69969714 CGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGC
1 CGCTAAAGG-CAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGC
* *
69969757 CGCTAAAGTCAA-GCTTTTAGCGGCGTTTGTGGTAAAAGCGC
1 CGCTAAAGGCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGC
* *
69969798 CGCTAAAGTCAA-GCTTTTTAGCGGCGTTTGTGGTAAAAGCGC
1 CGCTAAAGGCAAGGC-TTTTAGCGGCGTTTGTGGGAAAAGCGC
* *
69969840 TGCTAAACGTCAAGGCTTTTAGCGGCG
1 CGCTAAA-GGCAAGGCTTTTAGCGGCG
69969867 CTTTTTTTAC
Statistics
Matches: 183, Mismatches: 6, Indels: 10
0.92 0.03 0.05
Matches are distributed among these distances:
41 60 0.33
42 79 0.43
43 42 0.23
44 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (42 bp):
CGCTAAAGGCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGC
Found at i:69969794 original size:84 final size:84
Alignment explanation
Indices: 69969630--69969866 Score: 381
Period size: 84 Copynumber: 2.8 Consensus size: 84
69969620 AAAAAAACGG
* *
69969630 CGCTAAAGGTCAAGGCTTTTAGTGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCAAGGCTTTTAGC
1 CGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGTCAAGGCTTTTAGC
69969695 GGCGTTTGTGGAAAAGAGC
66 GGCGTTTGTGGAAAAGAGC
69969714 CGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGTCAA-GCTTTTAGC
1 CGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGTCAAGGCTTTTAGC
*
69969778 GGCGTTTGTGGTAAAAGCGC
66 GGCGTTTGTGG-AAAAGAGC
* *
69969798 CGCTAAA-GTCAA-GCTTTTTAGCGGCGTTTGTGGTAAAAGCGCTGCTAAACGTCAAGGCTTTTA
1 CGCTAAAGGTCAAGGC-TTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAA-GTCAAGGCTTTTA
69969861 GCGGCG
64 GCGGCG
69969867 CTTTTTTTAC
Statistics
Matches: 144, Mismatches: 5, Indels: 7
0.92 0.03 0.04
Matches are distributed among these distances:
82 2 0.01
83 57 0.40
84 72 0.50
85 13 0.09
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (84 bp):
CGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGTCAAGGCTTTTAGC
GGCGTTTGTGGAAAAGAGC
Found at i:69969976 original size:31 final size:31
Alignment explanation
Indices: 69969941--69970021 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 31
69969931 CTTCCTGCAT
* *
69969941 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAAAACAACAAATATAACA
* * * *
69969972 TAAAATGCAGCCAAAAACAGCAAATTTAACA
1 TAAAATCCAACCAAAAACAACAAATATAACA
*
69970003 TAAAAAATACAACCAAAAA
1 T--AAAATCCAACCAAAAA
69970022 TATTAATTCT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
31 26 0.65
33 14 0.35
ACGTcount: A:0.62, C:0.19, G:0.04, T:0.16
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAACA
Found at i:69970290 original size:21 final size:21
Alignment explanation
Indices: 69970266--69970311 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
69970256 GCTCGTGCCT
*
69970266 CTGCCTCTCTCGCTGCAGCCG
1 CTGCCTCCCTCGCTGCAGCCG
* * *
69970287 CTGCCTCCCTCTCTGCTGCCT
1 CTGCCTCCCTCGCTGCAGCCG
69970308 CTGC
1 CTGC
69970312 TCTAAGTTGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.02, C:0.50, G:0.20, T:0.28
Consensus pattern (21 bp):
CTGCCTCCCTCGCTGCAGCCG
Found at i:69975963 original size:9 final size:9
Alignment explanation
Indices: 69975949--69976183 Score: 143
Period size: 9 Copynumber: 25.6 Consensus size: 9
69975939 TATTTAAGTA
69975949 TTATGTAAG
1 TTATGTAAG
*
69975958 TTATGTAAT
1 TTATGTAAG
*
69975967 TTATGATATG
1 TTATG-TAAG
* * *
69975977 ATATAT-AT
1 TTATGTAAG
*
69975985 TTATGTAAA
1 TTATGTAAG
* *
69975994 TTATAT-AT
1 TTATGTAAG
*
69976002 TTATCTAAG
1 TTATGTAAG
*
69976011 TTATATAAG
1 TTATGTAAG
69976020 TTATGTAAG
1 TTATGTAAG
*
69976029 TTATGTAAA
1 TTATGTAAG
*
69976038 TTATGATATAAAA
1 TTATG---T-AAG
*
69976051 TATATTTAAG
1 T-TATGTAAG
69976061 TATTATGTAAG
1 --TTATGTAAG
69976072 TTATGTAAG
1 TTATGTAAG
* *
69976081 TTATAT-AT
1 TTATGTAAG
*
69976089 TTATCTAAG
1 TTATGTAAG
*
69976098 TTATATAAG
1 TTATGTAAG
*
69976107 TTATATAAG
1 TTATGTAAG
*
69976116 TTATGTATG
1 TTATGTAAG
*
69976125 TTATATAAG
1 TTATGTAAG
69976134 TTATGTAAG
1 TTATGTAAG
* *
69976143 TTATATATG
1 TTATGTAAG
* *
69976152 TTATATATG
1 TTATGTAAG
*
69976161 TTATATAAG
1 TTATGTAAG
*
69976170 TTATGTAAA
1 TTATGTAAG
69976179 TTATG
1 TTATG
69976184 ATATCAAATA
Statistics
Matches: 180, Mismatches: 35, Indels: 22
0.76 0.15 0.09
Matches are distributed among these distances:
8 16 0.09
9 140 0.78
10 7 0.04
11 8 0.04
12 2 0.01
13 4 0.02
14 3 0.02
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:69976028 original size:18 final size:18
Alignment explanation
Indices: 69975949--69976182 Score: 177
Period size: 18 Copynumber: 12.7 Consensus size: 18
69975939 TATTTAAGTA
* *
69975949 TTATGTAAGTTATGTAAT
1 TTATGTAAGTTATATAAG
* * *
69975967 TTATGATATGATATAT-AT
1 TTATG-TAAGTTATATAAG
* *
69975985 TTATGTAAATTATAT-AT
1 TTATGTAAGTTATATAAG
*
69976002 TTATCTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
* *
69976020 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
* *
69976038 TTATGATATAAAATATATTTAAG
1 TTATG---T-AAGT-TATATAAG
*
69976061 TATTATGTAAGTTATGTAAG
1 --TTATGTAAGTTATATAAG
* * *
69976081 TTATAT-ATTTATCTAAG
1 TTATGTAAGTTATATAAG
*
69976098 TTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAG
*
69976116 TTATGTATGTTATATAAG
1 TTATGTAAGTTATATAAG
*
69976134 TTATGTAAGTTATATATG
1 TTATGTAAGTTATATAAG
* *
69976152 TTATATATGTTATATAAG
1 TTATGTAAGTTATATAAG
*
69976170 TTATGTAAATTAT
1 TTATGTAAGTTAT
69976183 GATATCAAAT
Statistics
Matches: 174, Mismatches: 32, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
17 37 0.21
18 104 0.60
19 7 0.04
20 7 0.04
21 4 0.02
22 4 0.02
23 6 0.03
25 5 0.03
ACGTcount: A:0.38, C:0.01, G:0.12, T:0.48
Consensus pattern (18 bp):
TTATGTAAGTTATATAAG
Found at i:69976059 original size:114 final size:114
Alignment explanation
Indices: 69975925--69976146 Score: 313
Period size: 114 Copynumber: 1.9 Consensus size: 114
69975915 ACTAGTTATG
* * * *
69975925 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAATTTATGATATGATATAT-ATTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-ATATATAAGTTAT
* *
69975989 GTAAATTATAT-ATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
64 ATAAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
* *
69976039 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATATATATAAGTTATAT
* * *
69976104 AAGTTATATAAGTTATGTATGTTATATAAGTTATGTAAGTTAT
66 AAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTAT
69976147 ATATGTTATA
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
112 4 0.04
113 18 0.19
114 73 0.77
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.48
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATATATATAAGTTATAT
AAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
Found at i:69976307 original size:15 final size:15
Alignment explanation
Indices: 69976287--69976342 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
69976277 AAGTAGCGGG
69976287 ATTAAATAATATTTA
1 ATTAAATAATATTTA
69976302 ATTAAATAATATTT-
1 ATTAAATAATATTTA
69976316 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
69976331 ATTAAATAATAT
1 ATTAAATAATAT
69976343 ACATGTCGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.44
16 6 0.17
17 2 0.06
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:69976545 original size:24 final size:24
Alignment explanation
Indices: 69976517--69976584 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
69976507 ACTTAAATGG
69976517 TAAAACGGACGATAATATTTGTAA
1 TAAAACGGACGATAATATTTGTAA
*
69976541 TAAAACGGA-GAATAATATTTGTGA
1 TAAAACGGACG-ATAATATTTGTAA
*
69976565 TAAAACGGACGAGAATATTT
1 TAAAACGGACGATAATATTT
69976585 CAATAATAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.03
24 38 0.95
25 1 0.03
ACGTcount: A:0.46, C:0.07, G:0.19, T:0.28
Consensus pattern (24 bp):
TAAAACGGACGATAATATTTGTAA
Found at i:69977434 original size:372 final size:372
Alignment explanation
Indices: 69976672--69977583 Score: 1783
Period size: 372 Copynumber: 2.5 Consensus size: 372
69976662 AATTGAAACA
69976672 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
69976737 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
69976802 AATAAGGTT-GAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
131 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
69976866 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATAT
196 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATAT
69976931 AATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
261 AATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
69976996 TAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
326 TAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
69977043 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
69977108 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
69977173 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAAGTTTTGATAAAAAGTAGTTATAACTTTTAA
131 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAA-TTTTGATAAAAAGTAGTTATAACTTTTAA
69977238 AGAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATA
195 AGAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATA
*
69977303 TAATAATATCAGAAAAG-ATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
260 TAATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
69977367 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
325 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
69977415 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
69977480 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
*
69977545 AATAAGGTTGGAGAGAAAGTCAGCTATTGTTGTAATTTT
131 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTT
69977584 AATGGACAAG
Statistics
Matches: 537, Mismatches: 2, Indels: 4
0.99 0.00 0.01
Matches are distributed among these distances:
371 143 0.27
372 284 0.53
373 110 0.20
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (372 bp):
TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATAT
AATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
TAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
Found at i:69983092 original size:40 final size:40
Alignment explanation
Indices: 69983037--69983206 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
69983027 AACATTGGAA
69983037 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
69983077 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
69983117 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
69983156 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
69983197 CTATATCCGG
1 ATATATCCGG
69983207 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:69991188 original size:40 final size:40
Alignment explanation
Indices: 69991133--69991302 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
69991123 AACATTGGAA
69991133 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
69991173 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
69991213 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
69991252 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
69991293 CTATATCCGG
1 ATATATCCGG
69991303 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:69995077 original size:22 final size:22
Alignment explanation
Indices: 69995052--69995096 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
69995042 AAATAAAGAA
*
69995052 TATTCTTATTAATTTAAAAAAC
1 TATTCTCATTAATTTAAAAAAC
*
69995074 TATTCTCGTTAATTTAAAAAAC
1 TATTCTCATTAATTTAAAAAAC
69995096 T
1 T
69995097 TGTATTTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.42, C:0.11, G:0.02, T:0.44
Consensus pattern (22 bp):
TATTCTCATTAATTTAAAAAAC
Found at i:69996168 original size:22 final size:23
Alignment explanation
Indices: 69996142--69996184 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
69996132 AGAAAGTTAT
69996142 AAAATAATCA-TTAAATTATTTA
1 AAAATAATCATTTAAATTATTTA
**
69996164 AAAATTTTCATTTAAATTATT
1 AAAATAATCATTTAAATTATT
69996185 GAGATATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.47
Consensus pattern (23 bp):
AAAATAATCATTTAAATTATTTA
Found at i:70006603 original size:7 final size:7
Alignment explanation
Indices: 70006591--70006624 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
70006581 AAGTAAAATT
70006591 TTTATCA
1 TTTATCA
70006598 TTTATCA
1 TTTATCA
70006605 TTTATCA
1 TTTATCA
70006612 TTTATCA
1 TTTATCA
70006619 TTTATC
1 TTTATC
70006625 GGGCTTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.26, C:0.15, G:0.00, T:0.59
Consensus pattern (7 bp):
TTTATCA
Found at i:70012664 original size:21 final size:21
Alignment explanation
Indices: 70012626--70012665 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
70012616 TCATACTTAG
* *
70012626 TCATTCAACAACATAACCACT
1 TCATTCAAAAACAAAACCACT
*
70012647 TCATTCAAAAATAAAACCA
1 TCATTCAAAAACAAAACCA
70012666 GTTGACCACA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.23
Consensus pattern (21 bp):
TCATTCAAAAACAAAACCACT
Found at i:70013697 original size:16 final size:17
Alignment explanation
Indices: 70013666--70013701 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
70013656 CCCAACATGA
70013666 GTATTTTGAAATTTTGT
1 GTATTTTGAAATTTTGT
*
70013683 GTATTTTG-TATTTTGT
1 GTATTTTGAAATTTTGT
70013699 GTA
1 GTA
70013702 ATAAGGACTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.19, C:0.00, G:0.19, T:0.61
Consensus pattern (17 bp):
GTATTTTGAAATTTTGT
Found at i:70023656 original size:27 final size:28
Alignment explanation
Indices: 70023626--70023695 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
70023616 ATAATAAGTC
*
70023626 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
70023653 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
70023681 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70023696 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:70031584 original size:27 final size:28
Alignment explanation
Indices: 70031554--70031623 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
70031544 ATAATAAGTC
*
70031554 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
70031581 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
70031609 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70031624 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:70038579 original size:28 final size:27
Alignment explanation
Indices: 70038527--70038579 Score: 63
Period size: 28 Copynumber: 1.9 Consensus size: 27
70038517 GGTCTCTCTA
*
70038527 ATATATTTAAATTTTAGATTTATTTGC
1 ATATATTTAAATTTTAGATTCATTTGC
*
70038554 ATATACTTTAATTTTTA-ATATCATTT
1 ATATA-TTTAAATTTTAGAT-TCATTT
70038580 AGTCTATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 7 0.32
28 15 0.68
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.57
Consensus pattern (27 bp):
ATATATTTAAATTTTAGATTCATTTGC
Found at i:70038758 original size:10 final size:10
Alignment explanation
Indices: 70038739--70038772 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
70038729 TTTTACATTA
*
70038739 ATATCTATAT
1 ATATCAATAT
70038749 ATATCAATAT
1 ATATCAATAT
*
70038759 ATATCCATAT
1 ATATCAATAT
70038769 ATAT
1 ATAT
70038773 TTTATTCTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (10 bp):
ATATCAATAT
Found at i:70038864 original size:22 final size:22
Alignment explanation
Indices: 70038839--70038880 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
70038829 TTGTCTATAG
*
70038839 TTTAAGGTTTTATGGTTTTAGA
1 TTTAAGGTTTTATAGTTTTAGA
*
70038861 TTTAGGGTTTTATAGTTTTA
1 TTTAAGGTTTTATAGTTTTA
70038881 AGTTTTATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.57
Consensus pattern (22 bp):
TTTAAGGTTTTATAGTTTTAGA
Found at i:70039010 original size:21 final size:21
Alignment explanation
Indices: 70038986--70039025 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
70038976 GGGTTTTATG
*
70038986 GTTTTGGATTGAAGATTTAAT
1 GTTTAGGATTGAAGATTTAAT
* *
70039007 GTTTAGGATTTAAGGTTTA
1 GTTTAGGATTGAAGATTTA
70039026 CAATTTAGGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.25, T:0.47
Consensus pattern (21 bp):
GTTTAGGATTGAAGATTTAAT
Found at i:70039417 original size:40 final size:40
Alignment explanation
Indices: 70039331--70039420 Score: 103
Period size: 40 Copynumber: 2.2 Consensus size: 40
70039321 TCTTTAATCT
* * * *
70039331 TTTAGCGGCGCTTACGTAAAAACGCCGCTATAGGTCGGTC
1 TTTAGCGGCGCTTACCTAAAAACGCCACTATAGCTCGATC
*
70039371 TATAGCGGCGCTT-CTCTAAAAACGCCACTA-ATGCTCGATC
1 TTTAGCGGCGCTTAC-CTAAAAACGCCACTATA-GCTCGATC
70039411 TTTAGCGGCG
1 TTTAGCGGCG
70039421 TTTTTGAGAA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
39 2 0.05
40 40 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
TTTAGCGGCGCTTACCTAAAAACGCCACTATAGCTCGATC
Found at i:70047032 original size:19 final size:20
Alignment explanation
Indices: 70047008--70047045 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
70046998 GGTACCACCA
70047008 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
70047027 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
70047046 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:70048666 original size:26 final size:26
Alignment explanation
Indices: 70048630--70048725 Score: 156
Period size: 26 Copynumber: 3.7 Consensus size: 26
70048620 GGATATTACA
*
70048630 TGGGGCATAAGCCATTTTCAATAAAC
1 TGGGGCATAAGCCCTTTTCAATAAAC
* **
70048656 TGGGGGATAAGCCCTTTTCGGTAAAC
1 TGGGGCATAAGCCCTTTTCAATAAAC
70048682 TGGGGCATAAGCCCTTTTCAATAAAC
1 TGGGGCATAAGCCCTTTTCAATAAAC
70048708 TGGGGCATAAGCCCTTTT
1 TGGGGCATAAGCCCTTTT
70048726 GCACTTCCTC
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 63 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (26 bp):
TGGGGCATAAGCCCTTTTCAATAAAC
Found at i:70049556 original size:27 final size:27
Alignment explanation
Indices: 70049526--70049609 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
70049516 GGGCATATTC
* * *
70049526 GTCATTTTACCATACAAGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
70049553 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
*
70049580 GTCACTTTACCCTATAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
70049607 GTC
1 GTC
70049610 TTTTTACCTA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:70049615 original size:27 final size:27
Alignment explanation
Indices: 70049548--70049626 Score: 115
Period size: 27 Copynumber: 2.9 Consensus size: 27
70049538 TACAAGGGTA
*
70049548 TTACGGTCACTTTACCCTACAGGGGCT
1 TTACGGTCACTTTACCCTATAGGGGCT
70049575 TTACGGTCACTTTACCCTATAGGGGCT
1 TTACGGTCACTTTACCCTATAGGGGCT
**
70049602 TTACGGTCTTTTTA-CCTAATAGGGG
1 TTACGGTCACTTTACCCT-ATAGGGG
70049627 TATTTTAGTC
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 3 0.06
27 45 0.94
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (27 bp):
TTACGGTCACTTTACCCTATAGGGGCT
Found at i:70049701 original size:27 final size:27
Alignment explanation
Indices: 70049671--70050007 Score: 170
Period size: 27 Copynumber: 12.4 Consensus size: 27
70049661 GTAAATCTAC
*
70049671 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
*
70049698 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTT-TAGTAATTTTGT
*
70049724 AGAAAGTCAAGGGTATTTCT-GTAATTTTGT
1 --AAA-CCAAGGGTATTT-TAGTAATTTTGT
**
70049754 AAA-TTAGGGATATTTT-GTTAATTTTAG-
1 AAACCAAGGG-TATTTTAG-TAATTTT-GT
*** * * ***
70049781 AAATTGAGGGTGTTTTGGTAATTTCAC
1 AAACCAAGGGTATTTTAGTAATTTTGT
* * **
70049808 AAACC-AGTGGTATTTTGGTAACTTTAC
1 AAACCAAG-GGTATTTTAGTAATTTTGT
* * * **
70049835 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTTAGTAATTTTGT
* * *
70049862 AAACCAGGGGTATTTTAGCAATTTTAT
1 AAACCAAGGGTATTTTAGTAATTTTGT
* * *
70049889 AGACC-AGGGTATTTTGGTAATTTTACT
1 AAACCAAGGGTATTTTAGTAATTTT-GT
* *** *
70049916 -GATTGAGGGTATTTTGGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
70049942 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
* ****
70049969 AAATCAAGGGTAAAACAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
*
70049996 AAATCAAGGGTA
1 AAACCAAGGGTA
70050008 AAATAGTAAT
Statistics
Matches: 253, Mismatches: 40, Indels: 34
0.77 0.12 0.10
Matches are distributed among these distances:
26 28 0.11
27 190 0.75
28 15 0.06
29 19 0.08
30 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTGT
Found at i:70049928 original size:80 final size:81
Alignment explanation
Indices: 70049810--70049966 Score: 219
Period size: 80 Copynumber: 2.0 Consensus size: 81
70049800 AATTTCACAA
*
70049810 ACCAGTGGTATTTTGGTAACTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTAT
1 ACCAGTGGTATTTTGGTAACTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTAT
70049875 TTTAGCAATTTTATAG
66 TTTAGCAATTTTATAG
* ** * **
70049891 ACCAG-GGTATTTTGGTAATTTTACTGA-TTGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTA
1 ACCAGTGGTATTTTGGTAACTTTACAAACTAG-GGGTATTTTGGTAATTTTACAAACCAAGGGTA
*
70049954 TTTTAGTAATTTT
65 TTTTAGCAATTTT
70049967 GTAAATCAAG
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
79 2 0.03
80 60 0.90
81 5 0.07
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (81 bp):
ACCAGTGGTATTTTGGTAACTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTAT
TTTAGCAATTTTATAG
Found at i:70049979 original size:54 final size:54
Alignment explanation
Indices: 70049648--70050034 Score: 201
Period size: 54 Copynumber: 7.1 Consensus size: 54
70049638 TTTCACCCTA
* * * * * * *
70049648 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAAT
* * * * *
70049702 CAATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-CCAAGGGTATTT-TAGTAATTTTATAAAT
* * * *** * * * *
70049758 -TAGGGATATTTTGTTAATTTTAGAAATTGAGGGTGTTTTGGTAATTTCACAAA-
1 CAAGGG-TATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAAT
* * * * * * * *
70049811 CCAGTGGTATTTTGGTAACTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAAT
* * * * * *
70049866 CAGGGGTATTTTAGCAATTTTATAGACC-AGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTA-TAAAT
** * *
70049919 TGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAAT
***** * * *** *
70049973 CAAGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAAT
*
70050027 CGAGGGTA
1 CAAGGGTA
70050035 AAACAGTAAT
Statistics
Matches: 257, Mismatches: 63, Indels: 26
0.74 0.18 0.08
Matches are distributed among these distances:
53 43 0.17
54 158 0.61
55 24 0.09
56 32 0.12
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAAT
Found at i:70050008 original size:27 final size:27
Alignment explanation
Indices: 70049932--70050053 Score: 154
Period size: 27 Copynumber: 4.5 Consensus size: 27
70049922 GGGTATTTTG
* ****
70049932 GTAATTTTGTAAACCAAGGGTATTTTA
1 GTAATTTTGTAAATCAAGGGTAAAACA
70049959 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTTTGTAAATCAAGGGTAAAACA
*
70049986 GTAATTTTGTAAATCAAGGGTAAAATA
1 GTAATTTTGTAAATCAAGGGTAAAACA
* * *
70050013 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCAAGGGTAAAACA
*
70050040 GTAATTCTGTAAAT
1 GTAATTTTGTAAAT
70050054 TGGGGGTACT
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 84 1.00
ACGTcount: A:0.41, C:0.07, G:0.18, T:0.34
Consensus pattern (27 bp):
GTAATTTTGTAAATCAAGGGTAAAACA
Found at i:70050035 original size:54 final size:54
Alignment explanation
Indices: 70049932--70050053 Score: 172
Period size: 54 Copynumber: 2.3 Consensus size: 54
70049922 GGGTATTTTG
* *** * *
70049932 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACA
*
70049986 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACA
*
70050040 GTAATTCTGTAAAT
1 GTAATTTTGTAAAT
70050054 TGGGGGTACT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.41, C:0.07, G:0.18, T:0.34
Consensus pattern (54 bp):
GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACA
Found at i:70054920 original size:29 final size:29
Alignment explanation
Indices: 70054849--70054970 Score: 156
Period size: 29 Copynumber: 4.2 Consensus size: 29
70054839 AAGTCTACAT
* * *
70054849 ACATGCATATGGCCTACTAGGCCCAAA-C
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
70054877 TCATTCATATGGCCCATTATGCCTAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
70054906 ACATTCGTATCGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
70054935 ACATTCATATGGCTCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
70054964 ACATTCA
1 ACATTCA
70054971 AATACATGCT
Statistics
Matches: 79, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 21 0.27
29 58 0.73
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:70065539 original size:40 final size:40
Alignment explanation
Indices: 70065491--70065654 Score: 208
Period size: 40 Copynumber: 4.1 Consensus size: 40
70065481 CGGGATTTCA
* *
70065491 CCGGATATAGCT-ACTAGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTAGCTCAAATGCCTTCGGGACTTAGC
* *
70065531 CCGGATATAGTAACTCG-TACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTAGCT-CAAATGCCTTCGGGACTTAGC
* *
70065571 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTAGCTCAAATGCCTTCGGGACTTAGC
* *
70065611 CCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTAGCTCAAATGCCTTCGGGACTTAGC
70065651 CCGG
1 CCGG
70065655 TTATCATCCA
Statistics
Matches: 112, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
39 3 0.03
40 109 0.97
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTAGCTCAAATGCCTTCGGGACTTAGC
Found at i:70068655 original size:43 final size:45
Alignment explanation
Indices: 70068589--70068804 Score: 236
Period size: 43 Copynumber: 5.0 Consensus size: 45
70068579 ATATCATACA
* * *
70068589 ATGCCAAC-GTCCCACACA-TGGTCTTACATGTAATCACATATCG
1 ATGCCAACTGTCCCAGATAGTGGTCTTACACGTAATCACATATCG
* * *
70068632 ATGTC-ACTGTCCCAGATAG-GGTCTTACACGTAATAACAAATCG
1 ATGCCAACTGTCCCAGATAGTGGTCTTACACGTAATCACATATCG
* *
70068675 ATGCCGA-TGTCCCAGAT-GTGGTTTTACACGTAATCACATATCG
1 ATGCCAACTGTCCCAGATAGTGGTCTTACACGTAATCACATATCG
* * *
70068718 ATGCCAA-TGTCCCAAACA-TGGTCTTACACGTAATCACATATGG
1 ATGCCAACTGTCCCAGATAGTGGTCTTACACGTAATCACATATCG
* * *
70068761 ATGCCAAC-GTCCTAGA-CGTGGTCTTACACATAATCACATATCG
1 ATGCCAACTGTCCCAGATAGTGGTCTTACACGTAATCACATATCG
70068804 A
1 A
70068805 AATCACATAT
Statistics
Matches: 146, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
42 3 0.02
43 142 0.97
44 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (45 bp):
ATGCCAACTGTCCCAGATAGTGGTCTTACACGTAATCACATATCG
Found at i:70068741 original size:86 final size:86
Alignment explanation
Indices: 70068589--70068804 Score: 279
Period size: 86 Copynumber: 2.5 Consensus size: 86
70068579 ATATCATACA
* * * * * * *
70068589 ATGCCAACGTCCCACACATGGTCTTACATGTAATCACATATCGATGTCACTGTCCCAGATAGGGT
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAAACAGGGT
70068654 CTTACACGTAATAACAAATCG
66 CTTACACGTAATAACAAATCG
* * * * *
70068675 ATGCCGATGTCCCAGATGTGGTTTTACACGTAATCACATATCGATGCCAATGTCCCAAACATGGT
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAAACAGGGT
* * *
70068740 CTTACACGTAATCACATATGG
66 CTTACACGTAATAACAAATCG
* *
70068761 ATGCCAACGTCCTAGACGTGGTCTTACACATAATCACATATCGA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGA
70068805 AATCACATAT
Statistics
Matches: 109, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
86 109 1.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (86 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAAACAGGGT
CTTACACGTAATAACAAATCG
Found at i:70078177 original size:40 final size:40
Alignment explanation
Indices: 70078132--70078298 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
70078122 CGGAATATAA
*
70078132 CCGGATTTAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
70078172 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
70078212 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * ** *
70078252 CCGGATATAATTTCCAGCATAGTTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
70078291 CCGGATAT
1 CCGGATAT
70078299 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:70082241 original size:29 final size:29
Alignment explanation
Indices: 70082209--70082343 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
70082199 ATACCCTCCG
** * *
70082209 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
70082238 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
70082267 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
70082296 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
70082325 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
70082344 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:70082276 original size:58 final size:58
Alignment explanation
Indices: 70082213--70082344 Score: 174
Period size: 58 Copynumber: 2.3 Consensus size: 58
70082203 CCTCCGAGCT
** * ** * *
70082213 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
70082271 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
70082329 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
70082345 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
58 62 1.00
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:70093087 original size:27 final size:27
Alignment explanation
Indices: 70093047--70093110 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
70093037 TTGACGAGCT
** *
70093047 CCCTAGTTTGCCGAATTACTAG-TGAAC
1 CCCTAGTTCACCGAACTA-TAGCTGAAC
*
70093074 CCCTAGTTCACCGAACTATTGCTGAAC
1 CCCTAGTTCACCGAACTATAGCTGAAC
70093101 CCCTAGTTCA
1 CCCTAGTTCA
70093111 TCGGAGCTCT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 2 0.06
27 30 0.94
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (27 bp):
CCCTAGTTCACCGAACTATAGCTGAAC
Found at i:70096236 original size:45 final size:44
Alignment explanation
Indices: 70096116--70096372 Score: 360
Period size: 44 Copynumber: 5.8 Consensus size: 44
70096106 TACGGTACTA
70096116 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
1 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
*
70096160 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT-ACT
1 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-T
* * **
70096204 ATTTGGGCATTCAAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
1 A-TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* * *
70096249 ATCAGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAGAT-ACT
1 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-T
70096293 ATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
1 A-TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* *
70096338 ATCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTG
1 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTG
70096373 GATGAATTCA
Statistics
Matches: 189, Mismatches: 18, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
42 10 0.05
43 19 0.10
44 82 0.43
45 76 0.40
46 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (44 bp):
ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
Found at i:70096262 original size:89 final size:88
Alignment explanation
Indices: 70096128--70096372 Score: 393
Period size: 89 Copynumber: 2.8 Consensus size: 88
70096118 CGGGCCTTTG
70096128 AGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
1 AGCCTAGCAGGCTATAATGCCGGTGAAATGATATC-GGCCTTTGAGCCTAGCAGGCTATAATGCC
*
70096193 GGTGAGATACTATTTGGGCATTCA
65 GGTGAGATACTATTCGGGCATTCA
*
70096217 AGCCTAGCAGGCTATAATGCCGGTGAAATGATATCAGGCCTTTGAGCCTAGCAGGCTATAATACC
1 AGCCTAGCAGGCTATAATGCCGGTGAAATGATATC-GGCCTTTGAGCCTAGCAGGCTATAATGCC
* **
70096282 GGTGAGATACTATTCGGGCCTTTG
65 GGTGAGATACTATTCGGGCATTCA
* * *
70096306 AGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTCGAGCCTAGCAGGCGA-AATGCCG
1 AGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGCCTTTGAGCCTAGCAGGCTATAATGCCG
70096370 GTG
66 GTG
70096373 GATGAATTCA
Statistics
Matches: 146, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
87 9 0.06
88 19 0.13
89 118 0.81
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (88 bp):
AGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGCCTTTGAGCCTAGCAGGCTATAATGCCG
GTGAGATACTATTCGGGCATTCA
Found at i:70100175 original size:25 final size:25
Alignment explanation
Indices: 70100147--70100225 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
70100137 CGAATGGCCA
70100147 ATGTGATGAATGTGAAAGTGTATGT
1 ATGTGATGAATGTGAAAGTGTATGT
* * * *
70100172 ATGTGAT-AAGGCCGAATG-GCCA---
1 ATGTGATGAATG-TGAAAGTG-TATGT
70100194 ATGTGATGAATGTGAAAGTGTATGT
1 ATGTGATGAATGTGAAAGTGTATGT
70100219 ATGTGAT
1 ATGTGAT
70100226 AAGGCCGAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 14
0.64 0.13 0.23
Matches are distributed among these distances:
22 12 0.31
23 4 0.10
24 4 0.10
25 19 0.49
ACGTcount: A:0.32, C:0.05, G:0.32, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATGT
Found at i:70100193 original size:47 final size:47
Alignment explanation
Indices: 70100101--70100406 Score: 497
Period size: 47 Copynumber: 6.4 Consensus size: 47
70100091 AATTTTGTTA
70100101 TGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAAAGTGTATG--TATGTGATAAGGCCGAATGGCCAATG
70100150 TGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATG
70100197 TGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATG
70100244 TGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAAAGTGTATG--TATGTGATAAGGCCGAATGGCCAATG
70100293 TGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATG
* * * * *
70100340 TGATGAATGTGAAAGTATATATATATGACAAGGCCGAATGGTCAATG
1 TGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATG
* *
70100387 GGATGGAA-GTGGAAGTGTAT
1 TGAT-GAATGTGAAAGTGTAT
70100407 AACTGTGATA
Statistics
Matches: 246, Mismatches: 8, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
47 175 0.71
48 3 0.01
49 68 0.28
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
TGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATG
Found at i:70100279 original size:96 final size:96
Alignment explanation
Indices: 70100101--70100406 Score: 496
Period size: 96 Copynumber: 3.2 Consensus size: 96
70100091 AATTTTGTTA
70100101 TGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
1 TGATGAATGTGAAAGTGTATG--TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
70100166 GTATG--TATGTGATAAGGCCGAATGGCCAATG
64 GTATGTATATGTGATAAGGCCGAATGGCCAATG
70100197 TGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT
1 TGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT
70100262 ATGTATATGTGATAAGGCCGAATGGCCAATG
66 ATGTATATGTGATAAGGCCGAATGGCCAATG
70100293 TGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--GT
1 TGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT
* * * *
70100356 ATATATATATGACAAGGCCGAATGGTCAATG
66 ATGTATATGTGATAAGGCCGAATGGCCAATG
* *
70100387 GGATGGAA-GTGGAAGTGTAT
1 TGAT-GAATGTGAAAGTGTAT
70100407 AACTGTGATA
Statistics
Matches: 201, Mismatches: 6, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
94 90 0.45
95 3 0.01
96 108 0.54
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (96 bp):
TGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT
ATGTATATGTGATAAGGCCGAATGGCCAATG
Found at i:70100373 original size:143 final size:143
Alignment explanation
Indices: 70100101--70100406 Score: 533
Period size: 143 Copynumber: 2.1 Consensus size: 143
70100091 AATTTTGTTA
70100101 TGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
1 TGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
* * * *
70100166 GTATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGC
66 GTATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGACAAGGC
70100231 CGAATGGCCAATG
131 CGAATGGCCAATG
70100244 TGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
1 TGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
70100309 GTATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGACAAGGC
66 GTATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGACAAGGC
*
70100374 CGAATGGTCAATG
131 CGAATGGCCAATG
* *
70100387 GGATGGAA-GTGGAAGTGTAT
1 TGAT-GAATGTGAAAGTGTAT
70100407 AACTGTGATA
Statistics
Matches: 155, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
143 152 0.98
144 3 0.02
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (143 bp):
TGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
GTATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGACAAGGC
CGAATGGCCAATG
Found at i:70102322 original size:40 final size:40
Alignment explanation
Indices: 70102257--70102570 Score: 510
Period size: 40 Copynumber: 8.0 Consensus size: 40
70102247 AAGTTCAATA
* * *
70102257 TGATATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
1 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGG
70102297 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGG
1 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGG
70102337 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGG
1 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGG
*
70102377 TGATGTATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTGG
1 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGG
70102417 TGATGTATCCGGGCTAAGTT-CGAAGAGCATTCGTGCTGG
1 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGG
70102456 TGATGTATCCGGGCTAAG-TCCGAAGAGCATTCGTGCTGG
1 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGG
* * *
70102495 TGATATATCC-GGCTAAGTCCCGAAGAGCATTCGTTCTGG
1 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGG
* **
70102534 TGATGTATCCAGGCTAAGCCCCGAAG-GCATTCGTGCT
1 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
70102571 TGGACAAAAT
Statistics
Matches: 261, Mismatches: 10, Indels: 7
0.94 0.04 0.03
Matches are distributed among these distances:
38 8 0.03
39 103 0.39
40 150 0.57
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.27
Consensus pattern (40 bp):
TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGG
Found at i:70102865 original size:25 final size:25
Alignment explanation
Indices: 70102815--70102867 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
70102805 TGTGTGATAA
* *
70102815 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
70102840 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
70102865 CAA
1 CAA
70102868 GTTATTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.36, C:0.13, G:0.30, T:0.21
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:70106680 original size:16 final size:16
Alignment explanation
Indices: 70106657--70106871 Score: 64
Period size: 16 Copynumber: 13.6 Consensus size: 16
70106647 GGCCAATGTG
70106657 ATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTGT
*
70106673 ATGTATGTGATAAG-G-
1 ATGAATGTGA-AAGTGT
** *
70106688 CCGAATG-GCAA-TGT
1 ATGAATGTGAAAGTGT
70106702 GATGAATGTGAAAGTGT
1 -ATGAATGTGAAAGTGT
*
70106719 ATGTATGTGATAAG-G-
1 ATGAATGTGA-AAGTGT
** *
70106734 CCGAATG-GCCAA-TGT
1 ATGAATGTG-AAAGTGT
70106749 GATGAATGTGAAAGTGT
1 -ATGAATGTGAAAGTGT
70106766 ATGTATATGTGATAAG-G-
1 ATG-A-ATGTGA-AAGTGT
** *
70106783 CCGAATG-GCCAA-TGT
1 ATGAATGTG-AAAGTGT
70106798 GATGAATGTGAAAGTGT
1 -ATGAATGTGAAAGTGT
*
70106815 ATGTATGTGATAAG-G-
1 ATGAATGTGA-AAGTGT
* ***
70106830 CTGAATGACCAA-TGT
1 ATGAATGTGAAAGTGT
70106845 GATGAATGTGAAAGTGT
1 -ATGAATGTGAAAGTGT
*
70106862 ATGTATGTGA
1 ATGAATGTGA
70106872 TAAGGCCGAA
Statistics
Matches: 139, Mismatches: 33, Indels: 54
0.62 0.15 0.24
Matches are distributed among these distances:
13 3 0.02
14 12 0.09
15 21 0.15
16 68 0.49
17 25 0.18
18 7 0.05
19 3 0.02
ACGTcount: A:0.33, C:0.07, G:0.31, T:0.29
Consensus pattern (16 bp):
ATGAATGTGAAAGTGT
Found at i:70106969 original size:47 final size:47
Alignment explanation
Indices: 70106607--70106957 Score: 571
Period size: 47 Copynumber: 7.4 Consensus size: 47
70106597 ATTTTGTTAC
70106607 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATG--TATGTGATAAGGCCGAATGGCCAATGT
70106656 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGG-CAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
70106702 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
70106749 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATG--TATGTGATAAGGCCGAATGGCCAATGT
* *
70106798 GATGAATGTGAAAGTGTATGTATGTGATAAGGCTGAATGACCAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
70106845 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
* * * * *
70106892 GATGAATGTGAAAGTATATATATATGATAAGGCCGAATGGTCAATGG
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
*
70106939 GATCGAA-GTGGAAGTGTAT
1 GAT-GAATGTGAAAGTGTAT
70106958 AACTGTGATA
Statistics
Matches: 287, Mismatches: 11, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
46 46 0.16
47 171 0.60
48 3 0.01
49 67 0.23
ACGTcount: A:0.33, C:0.07, G:0.31, T:0.28
Consensus pattern (47 bp):
GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
Found at i:70108027 original size:11 final size:11
Alignment explanation
Indices: 70108011--70108040 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
70108001 ATTTTATTCA
70108011 AAAAAAAAAAG
1 AAAAAAAAAAG
*
70108022 AAAAAAAGAAG
1 AAAAAAAAAAG
70108033 AAAAAAAA
1 AAAAAAAA
70108041 GGTTTAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:70110395 original size:27 final size:27
Alignment explanation
Indices: 70110354--70110418 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
70110344 TGGATAAGTT
*
70110354 GTAGAATTACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACACCTATAGG
** *
70110381 GTAGAATTATTGAAATACACCTGTAGG
1 GTAGAATTACCGAAATACACCTATAGG
70110408 GTAGAATTACC
1 GTAGAATTACC
70110419 AAGATACCTT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACACCTATAGG
Found at i:70110425 original size:27 final size:25
Alignment explanation
Indices: 70110354--70110446 Score: 87
Period size: 27 Copynumber: 3.5 Consensus size: 25
70110344 TGGATAAGTT
*
70110354 GTAGAATTACCGAAATACCCCTATAGG
1 GTAGAATTACC-AAATA-CCCTGTAGG
**
70110381 GTAGAATTATTGAAATACACCTGTAGG
1 GTAGAATTA-CCAAATAC-CCTGTAGG
*
70110408 GTAGAATTACCAAGATACCTTTGTAGG
1 GTAGAATTACCAA-ATACC-CTGTAGG
*
70110435 GTAAAATTACCA
1 GTAGAATTACCA
70110447 TTTTGCCCCT
Statistics
Matches: 55, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (25 bp):
GTAGAATTACCAAATACCCTGTAGG
Found at i:70111187 original size:2 final size:2
Alignment explanation
Indices: 70111180--70111219 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
70111170 GCTTCGCCAC
70111180 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
70111220 CTGTTCTGGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:70120636 original size:211 final size:211
Alignment explanation
Indices: 70120272--70120694 Score: 828
Period size: 211 Copynumber: 2.0 Consensus size: 211
70120262 TATTGATGAT
70120272 ATACTGATATACTCTCGTAATGAAACTGAACATGCTGAGCATTTGAGACTTGTGTTACAGACTTT
1 ATACTGATATACTCTCGTAATGAAACTGAACATGCTGAGCATTTGAGACTTGTGTTACAGACTTT
70120337 GCGAGAAAAATAGTTGTATGCGAAGTTTAGTAAATGTGAGTTTTGGTTACATGAACTTAGCTTTC
66 GCGAGAAAAATAGTTGTATGCGAAGTTTAGTAAATGTGAGTTTTGGTTACATGAACTTAGCTTTC
70120402 TTGGACATGTTGTTTCAGTATCAGGTATTTGGGTTGATCCGAGTAAAATTTCAGCAATACTTTAT
131 TTGGACATGTTGTTTCAGTATCAGGTATTTGGGTTGATCCGAGTAAAATTTCAGCAATACTTTAT
70120467 TGGAAACCTCCGAGAA
196 TGGAAACCTCCGAGAA
*
70120483 ATACTGATATACTCTCGTAATGAAACTGAACATGCTGAGCATTTGAGACTTGTGTTACATACTTT
1 ATACTGATATACTCTCGTAATGAAACTGAACATGCTGAGCATTTGAGACTTGTGTTACAGACTTT
70120548 GCGAGAAAAATAGTTGTATGCGAAGTTTAGTAAATGTGAGTTTTGGTTACATGAACTTAGCTTTC
66 GCGAGAAAAATAGTTGTATGCGAAGTTTAGTAAATGTGAGTTTTGGTTACATGAACTTAGCTTTC
*
70120613 TTGGACATGTTGTTTCAGTATCAGGTATTTGGGTTGATCCGAGTAAAATTTCAGTAATACTTTAT
131 TTGGACATGTTGTTTCAGTATCAGGTATTTGGGTTGATCCGAGTAAAATTTCAGCAATACTTTAT
70120678 TGGAAACCTCCGAGAA
196 TGGAAACCTCCGAGAA
70120694 A
1 A
70120695 CATTTCTGAA
Statistics
Matches: 210, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
211 210 1.00
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (211 bp):
ATACTGATATACTCTCGTAATGAAACTGAACATGCTGAGCATTTGAGACTTGTGTTACAGACTTT
GCGAGAAAAATAGTTGTATGCGAAGTTTAGTAAATGTGAGTTTTGGTTACATGAACTTAGCTTTC
TTGGACATGTTGTTTCAGTATCAGGTATTTGGGTTGATCCGAGTAAAATTTCAGCAATACTTTAT
TGGAAACCTCCGAGAA
Found at i:70123904 original size:29 final size:29
Alignment explanation
Indices: 70123771--70123903 Score: 212
Period size: 29 Copynumber: 4.6 Consensus size: 29
70123761 GTGACAAGTT
70123771 TGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGAACTTAAATTATA
70123800 TGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGAACTTAAATTATA
*
70123829 TGGCACTAAGTGTGCAAACTTAAATTATA
1 TGGCACTAAGTGTGCGAACTTAAATTATA
* * ***
70123858 TGGCACTATGTGTGCGAGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAACTTAAATTATA
70123887 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
70123904 GATCGTTTAT
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 96 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAACTTAAATTATA
Found at i:70128283 original size:26 final size:26
Alignment explanation
Indices: 70128254--70128316 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 26
70128244 ATGGTATGAT
*
70128254 TGAAAATGATTTATTGATGTTAGATC
1 TGAAAATGATTGATTGATGTTAGATC
70128280 TG-AAAT-A--GATTGATGTTAGATC
1 TGAAAATGATTGATTGATGTTAGATC
*
70128302 TTAAAATAGATTGAT
1 TGAAAAT-GATTGAT
70128317 GTAATGATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
22 15 0.50
23 4 0.13
24 1 0.03
25 5 0.17
26 2 0.07
27 3 0.10
ACGTcount: A:0.38, C:0.03, G:0.19, T:0.40
Consensus pattern (26 bp):
TGAAAATGATTGATTGATGTTAGATC
Found at i:70128291 original size:22 final size:23
Alignment explanation
Indices: 70128266--70128318 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
70128256 AAAATGATTT
*
70128266 ATTGATGTTAGATC-TGAAATAG
1 ATTGATGTTAGATCTTAAAATAG
70128288 ATTGATGTTAGATCTTAAAATAG
1 ATTGATGTTAGATCTTAAAATAG
70128311 ATTGATGT
1 ATTGATGT
70128319 AATGATTATA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 14 0.48
23 15 0.52
ACGTcount: A:0.36, C:0.04, G:0.21, T:0.40
Consensus pattern (23 bp):
ATTGATGTTAGATCTTAAAATAG
Found at i:70128332 original size:2 final size:2
Alignment explanation
Indices: 70128325--70128350 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
70128315 ATGTAATGAT
70128325 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
70128351 AATTTCATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:70133342 original size:23 final size:24
Alignment explanation
Indices: 70133311--70133392 Score: 123
Period size: 23 Copynumber: 3.4 Consensus size: 24
70133301 CTGGAGGCCT
*
70133311 AGCCTCTTTTAATAACCGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
70133335 AGCCCTTTTTAATAACTGGGGCATA
1 AGCCC-TTTTAATAACTGGGGCATA
70133360 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
70133383 AGCCCTTTTA
1 AGCCCTTTTA
70133393 CACTTCCTCC
Statistics
Matches: 54, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
23 24 0.44
24 24 0.44
25 6 0.11
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:70133463 original size:9 final size:9
Alignment explanation
Indices: 70133449--70133525 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
70133439 ATCTCGTGTG
70133449 CATATCATA
1 CATATCATA
*
70133458 CATATCATGTG
1 CATATCA--TA
70133469 CATATCATA
1 CATATCATA
* *
70133478 CATGTCATGTG
1 CATATCA--TA
70133489 CATATCATA
1 CATATCATA
*
70133498 CATATCATGTG
1 CATATCA--TA
70133509 CATATCATA
1 CATATCATA
70133518 CATATCAT
1 CATATCAT
70133526 GTTTATCCAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:70133468 original size:20 final size:20
Alignment explanation
Indices: 70133445--70133527 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
70133435 GAACATCTCG
70133445 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
70133465 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
70133485 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
70133505 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
70133525 TGT
1 TGT
70133528 TTATCCAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:70133474 original size:11 final size:11
Alignment explanation
Indices: 70133445--70133516 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
70133435 GAACATCTCG
70133445 TGTGCATATCA
1 TGTGCATATCA
*
70133456 --TACATATCA
1 TGTGCATATCA
70133465 TGTGCATATCA
1 TGTGCATATCA
* *
70133476 --TACATGTCA
1 TGTGCATATCA
70133485 TGTGCATATCA
1 TGTGCATATCA
*
70133496 --TACATATCA
1 TGTGCATATCA
70133505 TGTGCATATCA
1 TGTGCATATCA
70133516 T
1 T
70133517 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:70133592 original size:25 final size:25
Alignment explanation
Indices: 70133564--70133611 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
70133554 ATGTATAAAC
* * *
70133564 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
70133589 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
70133612 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:70144981 original size:44 final size:44
Alignment explanation
Indices: 70144840--70145058 Score: 241
Period size: 45 Copynumber: 5.0 Consensus size: 44
70144830 CCCGAATTCA
* * *
70144840 TCACCGGCATT-TCGCCTACTAGGCTCGAA-GCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-A-T
* * * *
70144882 TTACCGACATTATAGGCTGCTAGGCTCGAAGGCCCGAATAGTAT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTAT
* *
70144926 CCAACCGGCATTATAGCCTGCTAGGCTCAAAGG-CCTAATAGTAT
1 TC-ACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTAT
*
70144970 ATCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTAT
1 -TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTAT
* * *
70145015 CTCACCGGCATCATAGCCTGTTAGGCTCAAAGGCCCAAATAGTA
1 -TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
70145059 CCGTACGATA
Statistics
Matches: 151, Mismatches: 19, Indels: 11
0.83 0.10 0.06
Matches are distributed among these distances:
42 9 0.06
43 15 0.10
44 45 0.30
45 81 0.54
46 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTAT
Found at i:70144991 original size:89 final size:90
Alignment explanation
Indices: 70144889--70145058 Score: 272
Period size: 89 Copynumber: 1.9 Consensus size: 90
70144879 ATTTTACCGA
* * *
70144889 CATTATAGGCTGCTAGGCTCGAAGGCCCGAATAGTATC-CAACCGGCATTATAGCCTGCTAGGCT
1 CATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTC-ACCGGCATCATAGCCTGCTAGGCT
*
70144953 CAAAGG-CCTAATAGTATATCACTGG
65 CAAAGGCCCAAATAGTATATCACTGG
*
70144978 CATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATCATAGCCTGTTAGGCTC
1 CATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATCATAGCCTGCTAGGCTC
70145043 AAAGGCCCAAATAGTA
66 AAAGGCCCAAATAGTA
70145059 CCGTACGATA
Statistics
Matches: 74, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
89 64 0.86
90 10 0.14
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (90 bp):
CATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATCATAGCCTGCTAGGCTC
AAAGGCCCAAATAGTATATCACTGG
Found at i:70149454 original size:27 final size:26
Alignment explanation
Indices: 70149419--70149557 Score: 172
Period size: 27 Copynumber: 5.2 Consensus size: 26
70149409 AGCATGGCTG
* *
70149419 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
70149445 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
70149473 CCAGAACAGATATATGTGGTAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
70149500 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
70149527 CTAGATCAGATAATTGTGGC-GTAGCCA
1 CCAGAACAGATAA-TGTGGCAG-AGCCA
70149554 CCAG
1 CCAG
70149558 GACGCTTCCT
Statistics
Matches: 101, Mismatches: 7, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
26 7 0.07
27 77 0.76
28 17 0.17
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:70157559 original size:46 final size:46
Alignment explanation
Indices: 70157509--70157684 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
70157499 TGGTTGAGCA
*
70157509 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
70157555 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * * *
70157602 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATACGAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
70157648 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70157685 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 64 0.59
47 29 0.27
48 3 0.03
50 4 0.04
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:70157665 original size:93 final size:93
Alignment explanation
Indices: 70157506--70157677 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
70157496 GGATGGTTGA
* * ***
70157506 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATACAAACACCCGAACTCGTTGAGT
70157571 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
70157599 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATACGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATACAAACACCCGAACTCGTTGAGT
70157664 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
70157678 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATACAAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:70159826 original size:15 final size:15
Alignment explanation
Indices: 70159788--70159830 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
70159778 CATAGTATCG
* *
70159788 TATCTTGGGTTTCTT
1 TATCTTGGATTTCTC
70159803 TAT-TCTGGATTTCTC
1 TATCT-TGGATTTCTC
70159818 TATCTTGGATTTC
1 TATCTTGGATTTC
70159831 CTTATTCGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
14 1 0.04
15 22 0.92
16 1 0.04
ACGTcount: A:0.12, C:0.16, G:0.16, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:70162342 original size:47 final size:47
Alignment explanation
Indices: 70162225--70162394 Score: 199
Period size: 45 Copynumber: 3.7 Consensus size: 47
70162215 GGATGGTTGA
* *
70162225 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGATGCAAAG
* *
70162272 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGATGCAA--AG
* * *
70162317 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAAC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAT-GATGCAAAG
*
70162365 GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
70162395 GCTTATGGGC
Statistics
Matches: 106, Mismatches: 10, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 31 0.29
46 27 0.25
47 30 0.28
48 5 0.05
50 5 0.05
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGATGCAAAG
Found at i:70164383 original size:27 final size:26
Alignment explanation
Indices: 70164348--70164442 Score: 111
Period size: 27 Copynumber: 3.5 Consensus size: 26
70164338 AGCATGGCTG
*
70164348 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
70164374 CCAGATACAGATAATCGT-AGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGA-CAGAGCCA
* *
70164402 CCAGAATAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
*
70164429 CCAGATCAGATAAT
1 CCAGAACAGATAAT
70164443 TATGGCGTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 10
0.80 0.07 0.14
Matches are distributed among these distances:
26 7 0.12
27 36 0.61
28 16 0.27
ACGTcount: A:0.40, C:0.21, G:0.22, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:70164448 original size:27 final size:27
Alignment explanation
Indices: 70164348--70164459 Score: 106
Period size: 27 Copynumber: 4.1 Consensus size: 27
70164338 AGCATGGCTG
* * *
70164348 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGATCAGATAATTGTGGCAGAGCCA
* *
70164374 CCAGATACAGATAATCGTAGCAGAGCCA
1 CCAGAT-CAGATAATTGTGGCAGAGCCA
70164402 CCAGAAT-AGAT-ATATGTGGCAGAGCCA
1 CCAG-ATCAGATAAT-TGTGGCAGAGCCA
*
70164429 CCAGATCAGATAATTATGGC-GTAGCCA
1 CCAGATCAGATAATTGTGGCAG-AGCCA
70164456 CCAG
1 CCAG
70164460 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
26 10 0.14
27 44 0.62
28 15 0.21
29 2 0.03
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGATCAGATAATTGTGGCAGAGCCA
Found at i:70164455 original size:54 final size:54
Alignment explanation
Indices: 70164348--70164459 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
70164338 AGCATGGCTG
* *
70164348 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTAGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCATAGCAGAGCCA
* * * *
70164402 CCAGAATAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTATGGC-GTAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCATAGCAG-AGCCA
70164456 CCAG
1 CCAG
70164460 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
53 1 0.02
54 31 0.62
55 18 0.36
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCATAGCAGAGCCA
Found at i:70166786 original size:43 final size:43
Alignment explanation
Indices: 70166751--70166869 Score: 143
Period size: 41 Copynumber: 2.8 Consensus size: 43
70166741 ATCGATTTGA
*
70166751 GATTACATGTAAGACCATGTTTGGGATATTGGCATC-ATATTT
1 GATTACATATAAGACCATGTTTGGGATATTGGCATCGATATTT
** * * * *
70166793 GATT-TTTTTAAGACCTTGTCTGGGATAGTGGCATCGATATTT
1 GATTACATATAAGACCATGTTTGGGATATTGGCATCGATATTT
* *
70166835 GATTACATATAAGACCACGTTTGGGATGTTGGCAT
1 GATTACATATAAGACCATGTTTGGGATATTGGCAT
70166870 TGTACGAGCT
Statistics
Matches: 61, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
41 25 0.41
42 14 0.23
43 22 0.36
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.38
Consensus pattern (43 bp):
GATTACATATAAGACCATGTTTGGGATATTGGCATCGATATTT
Found at i:70170986 original size:27 final size:26
Alignment explanation
Indices: 70170907--70170988 Score: 101
Period size: 27 Copynumber: 3.1 Consensus size: 26
70170897 TGGTTGCCAG
* * *
70170907 AACAGATATTGTGACAGCGTCACCAGA
1 AACAGATATTGTGGCAGAGCCACCA-A
* *
70170934 TACAGATATTGTAGCAGAGCCACCAA
1 AACAGATATTGTGGCAGAGCCACCAA
70170960 AACAGATATTTGTGGCAGAGCCACCAA
1 AACAGATA-TTGTGGCAGAGCCACCAA
70170987 AA
1 AA
70170989 TACTTCCTCC
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 8 0.17
27 39 0.83
ACGTcount: A:0.39, C:0.22, G:0.21, T:0.18
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAA
Found at i:70173927 original size:32 final size:32
Alignment explanation
Indices: 70173858--70173927 Score: 79
Period size: 32 Copynumber: 2.2 Consensus size: 32
70173848 TGAATGGCCA
* *
70173858 TTTTGGTATGATTTGGTAGTTAAATTGTAAGG
1 TTTTGATATGATTTGGTAGTTAAATTATAAGG
* * *
70173890 TTTTGATATGATTTTGT-GTTTAATTATATGG
1 TTTTGATATGATTTGGTAGTTAAATTATAAGG
70173921 TGTTTGA
1 T-TTTGA
70173928 GATAAATGTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
31 12 0.38
32 20 0.62
ACGTcount: A:0.23, C:0.00, G:0.24, T:0.53
Consensus pattern (32 bp):
TTTTGATATGATTTGGTAGTTAAATTATAAGG
Found at i:70179781 original size:27 final size:27
Alignment explanation
Indices: 70179750--70179922 Score: 240
Period size: 27 Copynumber: 6.4 Consensus size: 27
70179740 ATTACCAAAG
* * *
70179750 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
*
70179777 CACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
70179804 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* **
70179831 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCATTT
70179858 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
70179885 TACCCTC-AGTTTACAAAATTACCATTT
1 TACCCTCGA-TTTACAAAATTACCATTT
*
70179912 TACCCTTGATT
1 TACCCTCGATT
70179923 ATGAAATTAC
Statistics
Matches: 130, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 1 0.01
27 128 0.98
28 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:70179840 original size:81 final size:81
Alignment explanation
Indices: 70179750--70179922 Score: 276
Period size: 81 Copynumber: 2.1 Consensus size: 81
70179740 ATTACCAAAG
*
70179750 TACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTC-GAT
1 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAG-T
* *
70179814 TTATAGAATTACCATTT
65 TTACAAAATTACCATTT
* *
70179831 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTT
1 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAGTT
70179896 TACAAAATTACCATTT
66 TACAAAATTACCATTT
*
70179912 TACCCTTGATT
1 TACCCTCGATT
70179923 ATGAAATTAC
Statistics
Matches: 85, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
81 84 0.99
82 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAGTT
TACAAAATTACCATTT
Found at i:70179955 original size:26 final size:26
Alignment explanation
Indices: 70179926--70180076 Score: 110
Period size: 27 Copynumber: 5.7 Consensus size: 26
70179916 CTTGATTATG
*
70179926 AAATTACTAAAATACCTCCAG-TTGTA
1 AAATTACCAAAATACC-CCAGTTTGTA
* * *
70179952 AAATTACCAAAGTACCCCGGTTTATA
1 AAATTACCAAAATACCCCAGTTTGTA
* *
70179978 AAATTACCCAAATATCCTC-GATTTGTA
1 AAATTACCAAAATA-CCCCAG-TTTGTA
* *
70180005 AAATTACCGAAATACCCTCAGTTTGCA
1 AAATTACCAAAATACCC-CAGTTTGTA
** ***
70180032 AAATTACTGAAATACCCTC-GATCAATA
1 AAATTACCAAAATACCC-CAG-TTTGTA
70180059 AAATTACCAAAATACCCC
1 AAATTACCAAAATACCCC
70180077 TGCAGGGTAG
Statistics
Matches: 101, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
25 3 0.03
26 35 0.35
27 62 0.61
28 1 0.01
ACGTcount: A:0.41, C:0.24, G:0.08, T:0.27
Consensus pattern (26 bp):
AAATTACCAAAATACCCCAGTTTGTA
Found at i:70180006 original size:27 final size:27
Alignment explanation
Indices: 70179947--70180075 Score: 120
Period size: 27 Copynumber: 4.8 Consensus size: 27
70179937 ATACCTCCAG
*
70179947 TTGTAAAATTA-CCAAAGTACCC-CGGT
1 TTGTAAAATTACCCAAA-TACCCTCGAT
* *
70179973 TTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTACCCAAATACCCTCGAT
*
70180000 TTGTAAAATTACCGAAATACCCTC-AGT
1 TTGTAAAATTACCCAAATACCCTCGA-T
* **
70180027 TTGCAAAATTACTGAAATACCCTCGAT
1 TTGTAAAATTACCCAAATACCCTCGAT
*** *
70180054 CAATAAAATTACCAAAATACCC
1 TTGTAAAATTACCCAAATACCC
70180076 CTGCAGGGTA
Statistics
Matches: 85, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
26 15 0.18
27 69 0.81
28 1 0.01
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (27 bp):
TTGTAAAATTACCCAAATACCCTCGAT
Found at i:70180051 original size:54 final size:51
Alignment explanation
Indices: 70179926--70180076 Score: 149
Period size: 54 Copynumber: 2.8 Consensus size: 51
70179916 CTTGATTATG
* * * *
70179926 AAATTACTAAAATACCTCCAGTTGTAAAATTACCAAAGTACCCCGGTTTATA
1 AAATTACTAAAATACCTCGATTTGTAAAATTACCAAA-TACCCCAGTTTACA
** *
70179978 AAATTACCCAAATATCCTCGATTTGTAAAATTACCGAAATACCCTCAGTTTGCA
1 AAATTACTAAAATA-CCTCGATTTGTAAAATTACC-AAATACCC-CAGTTTACA
* ***
70180032 AAATTACTGAAATACCCTCGATCAATAAAATTACCAAAATACCCC
1 AAATTACTAAAATA-CCTCGATTTGTAAAATTACC-AAATACCCC
70180077 TGCAGGGTAG
Statistics
Matches: 82, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
52 12 0.15
53 24 0.29
54 46 0.56
ACGTcount: A:0.41, C:0.24, G:0.08, T:0.27
Consensus pattern (51 bp):
AAATTACTAAAATACCTCGATTTGTAAAATTACCAAATACCCCAGTTTACA
Found at i:70180090 original size:27 final size:27
Alignment explanation
Indices: 70180060--70180370 Score: 347
Period size: 27 Copynumber: 11.3 Consensus size: 27
70180050 CGATCAATAA
* *
70180060 AATTACCAAAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
70180087 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
70180114 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
70180141 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
70180168 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
70180195 AAATACAGAAATACAGAAATACCCCTGTAGGGTAG
1 -AAT-------TACCGAAATACCCCTGTAGGGTAG
* * *
70180230 AATTATCGCAATACCCCTCTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
70180257 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
70180284 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
70180311 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
70180338 AATTACC-AAGATA-CCTTGTGGGGTAA
1 AATTACCGAA-ATACCCCTGTAGGGTAG
70180364 AATTACC
1 AATTACC
70180371 ATTTTGCCCT
Statistics
Matches: 245, Mismatches: 30, Indels: 19
0.83 0.10 0.06
Matches are distributed among these distances:
26 18 0.07
27 198 0.81
28 3 0.01
34 3 0.01
35 23 0.09
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:70180091 original size:54 final size:53
Alignment explanation
Indices: 70180040--70180196 Score: 165
Period size: 54 Copynumber: 2.9 Consensus size: 53
70180030 CAAAATTACT
70180040 GAAATACCCTCGATCA-ATAAAATTACCAAAATACCCCTGCAGGGTAGAATTATC
1 GAAATACCCTCG-T-AGATAAAATTACCAAAATACCCCTGCAGGGTAGAATTATC
* * * * *
70180094 GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCTCGTA-GATAAAATTACCAAAATACCCCTGCAGGGTAGAATTATC
* * * * *
70180148 GCAATACCC-CTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAA
1 GAAATACCCTC-GTA-GATAAAATTACCAAAATACCCCTGCAGGGTAGAA
70180197 ATACAGAAAT
Statistics
Matches: 93, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
52 1 0.01
53 1 0.01
54 91 0.98
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.23
Consensus pattern (53 bp):
GAAATACCCTCGTAGATAAAATTACCAAAATACCCCTGCAGGGTAGAATTATC
Found at i:70180255 original size:143 final size:143
Alignment explanation
Indices: 70180068--70180335 Score: 430
Period size: 143 Copynumber: 1.9 Consensus size: 143
70180058 AAAATTACCA
* *
70180068 AAATACCCCTGCAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTGCAGGGTAGAATTATCGAAATACCCCTCTAGGGTAGAATTACCGAAATACCCCTG
** * * *
70180133 TAGGGTAGAATTA-TCGCAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAA
66 TAGGGTAGAATTACT-AAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTGTAGGGTAGAA
70180197 ATACAGAAATACAG
130 ATACAGAAATACAG
* *
70180211 AAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTCTAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTGCAGGGTAGAATTATCGAAATACCCCTCTAGGGTAGAATTACCGAAATACCCCTG
*
70180276 TAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACTAAAATACCCCTGTAGGGT
66 TAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTGTAGGGT
70180336 GGAATTACCA
Statistics
Matches: 114, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
143 113 0.99
144 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (143 bp):
AAATACCCCTGCAGGGTAGAATTATCGAAATACCCCTCTAGGGTAGAATTACCGAAATACCCCTG
TAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTGTAGGGTAGAAA
TACAGAAATACAG
Found at i:70180297 original size:89 final size:89
Alignment explanation
Indices: 70180112--70180285 Score: 321
Period size: 89 Copynumber: 2.0 Consensus size: 89
70180102 CTTGTAGGGT
* * *
70180112 AGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGA
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTCTAGGGTAGAATTACCGA
70180177 AATACCCCTGTAGGGTAGAAATAC
66 AATACCCCTGTAGGGTAGAAATAC
70180201 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTCTAGGGTAGAATTACCGA
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTCTAGGGTAGAATTACCGA
70180266 AATACCCCTGTAGGGTAGAA
66 AATACCCCTGTAGGGTAGAA
70180286 TTACTAAAAT
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 82 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (89 bp):
AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTCTAGGGTAGAATTACCGA
AATACCCCTGTAGGGTAGAAATAC
Done.