Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 248 of 444
Found at i:70518506 original size:17 final size:19
Alignment explanation
Indices: 70518483--70518528 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
70518473 AAGAAGCATG
70518483 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
70518501 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
70518519 AATCATGCTC
1 AATCATGCTC
70518529 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:70525552 original size:40 final size:40
Alignment explanation
Indices: 70525507--70525673 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
70525497 CGGAATATAA
70525507 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
70525547 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
70525587 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
70525627 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
70525666 CCGGATAT
1 CCGGATAT
70525674 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:70525657 original size:80 final size:79
Alignment explanation
Indices: 70525507--70525673 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
70525497 CGGAATATAA
* *
70525507 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
70525572 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
70525587 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
70525649 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
70525666 CCGGATAT
1 CCGGATAT
70525674 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:70526522 original size:17 final size:19
Alignment explanation
Indices: 70526499--70526544 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
70526489 AAGAAGCATG
70526499 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
70526517 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
70526535 AATCATGCTC
1 AATCATGCTC
70526545 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:70527423 original size:48 final size:48
Alignment explanation
Indices: 70527371--70528713 Score: 2017
Period size: 48 Copynumber: 28.0 Consensus size: 48
70527361 TGTTACAACA
* *
70527371 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
70527419 TTCACATTCGCCATTCGGCTTTACGACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
70527467 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
70527515 TTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
70527563 TTCACATTTGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
70527611 TTCACATTAGCCATTCGGCTTTGCCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
70527659 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
70527707 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
70527755 TT-ACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
70527802 TTCACGTTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
70527850 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
70527898 TTCACGTTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
70527946 TTCACATTCGCCATTCGCCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
70527994 TTCACATTAGCCATTCGACTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
70528042 TTCACATTCGCCATTCGGCTTTACCACATATATATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
70528090 TTCAGAATAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
70528138 TTCACATTCA-CCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATT-AGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
70528186 TTCACAATAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
70528234 TTCAAATTCA-CCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATT-AGCCATTCGGCTTTACCACATATACATATCTCATATATAT
** *
70528282 TTCAGGTTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
70528330 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
70528378 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
70528426 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
70528474 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
70528522 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
70528570 TTCACAATAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
70528618 TTCACATTCGCCATTTGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
70528666 TTCGCATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
70528714 ATATTTATCT
Statistics
Matches: 1161, Mismatches: 129, Indels: 10
0.89 0.10 0.01
Matches are distributed among these distances:
47 45 0.04
48 1114 0.96
49 2 0.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
Found at i:70527488 original size:96 final size:96
Alignment explanation
Indices: 70527371--70528703 Score: 2407
Period size: 96 Copynumber: 13.9 Consensus size: 96
70527361 TGTTACAACA
* * * * * *
70527371 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATATTTCACATTCGCCATTCG
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
* *
70527436 GCTTTACGACATATACATATCTCATATATAT
66 GCTTTACCACATATACATATCTCATACATAT
* *
70527467 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCA
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
70527532 GCTTTACCACATATACATATCTCATACATAT
66 GCTTTACCACATATACATATCTCATACATAT
*
70527563 TTCACATTTGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
*
70527628 GCTTTGCCACATATACATATCTCATACATAT
66 GCTTTACCACATATACATATCTCATACATAT
70527659 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
70527724 GCTTTACCACATATACATATCTCATACATAT
66 GCTTTACCACATATACATATCTCATACATAT
*
70527755 TT-ACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACGTTAGCCATTCG
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
70527819 GCTTTACCACATATACATATCTCATACATAT
66 GCTTTACCACATATACATATCTCATACATAT
*
70527850 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACGTTAGCCATTCG
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
70527915 GCTTTACCACATATACATATCTCATACATAT
66 GCTTTACCACATATACATATCTCATACATAT
*
70527946 TTCACATTCGCCATTCGCCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
*
70528011 ACTTTACCACATATACATATCTCATACATAT
66 GCTTTACCACATATACATATCTCATACATAT
* * *
70528042 TTCACATTCGCCATTCGGCTTTACCACATATATATATCACACATATATTTCAGAATAGCCATTCG
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
70528107 GCTTTACCACATATACATATCTCATACATAT
66 GCTTTACCACATATACATATCTCATACATAT
* *
70528138 TTCACATTCACCATTCGGCTTTACCACATATACATATCACACATATATTTCACAATAGCCATTCG
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
70528203 GCTTTACCACATATACATATCTCATACATAT
66 GCTTTACCACATATACATATCTCATACATAT
* * **
70528234 TTCAAATTCACCATTCGGCTTTACCACATATACATATCACACATATATTTCAGGTTAGCCATTCG
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
70528299 GCTTTACCACATATACATATCTCATACATAT
66 GCTTTACCACATATACATATCTCATACATAT
70528330 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
70528395 GCTTTACCACATATACATATCTCATACATAT
66 GCTTTACCACATATACATATCTCATACATAT
70528426 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
70528491 GCTTTACCACATATACATATCTCATACATAT
66 GCTTTACCACATATACATATCTCATACATAT
*
70528522 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACAATAGCCATTCG
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
70528587 GCTTTACCACATATACATATCTCATACATAT
66 GCTTTACCACATATACATATCTCATACATAT
* *
70528618 TTCACATTCGCCATTTGGCTTTACCACATATACATATCACACATATATTTCGCATTAGCCATTCG
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
70528683 GCTTTACCACATATACATATC
66 GCTTTACCACATATACATATC
70528704 ACACATATAT
Statistics
Matches: 1199, Mismatches: 37, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
95 94 0.08
96 1105 0.92
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.35
Consensus pattern (96 bp):
TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
GCTTTACCACATATACATATCTCATACATAT
Found at i:70542094 original size:13 final size:14
Alignment explanation
Indices: 70542078--70542106 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
70542068 GGTGTGTGAC
70542078 ACACCCGT-GTCGA
1 ACACCCGTGGTCGA
70542091 ACACCCGTGGTCGA
1 ACACCCGTGGTCGA
70542105 AC
1 AC
70542107 CTATCAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.24, C:0.38, G:0.24, T:0.14
Consensus pattern (14 bp):
ACACCCGTGGTCGA
Found at i:70543891 original size:24 final size:24
Alignment explanation
Indices: 70543864--70543978 Score: 221
Period size: 24 Copynumber: 4.8 Consensus size: 24
70543854 CTTATTATGT
*
70543864 TCGCACATATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
70543888 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
70543912 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
70543936 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
70543960 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
70543979 TATTTCCAGC
Statistics
Matches: 90, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
24 90 1.00
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.22
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:70544003 original size:29 final size:29
Alignment explanation
Indices: 70543961--70544034 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
70543951 CATAGTAAAT
*
70543961 CGCACACATAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
70543990 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
70544019 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
70544035 ATCTCGTCAC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:70566718 original size:78 final size:80
Alignment explanation
Indices: 70566583--70566804 Score: 267
Period size: 78 Copynumber: 2.8 Consensus size: 80
70566573 TCGAATGATG
* * * * *
70566583 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
70566647 CGTGCGAGTTACTAAA
65 CGTGCGAGTTACTAAA
70566663 T-C-GACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
1 TCCGGACTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
*
70566725 TGTGCGAGTTACTAAA
65 CGTGCGAGTTACTAAA
** * * *
70566741 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCAT
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCAT
70566804 T
64 T
70566805 TGAACGAGTA
Statistics
Matches: 124, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
78 62 0.50
79 11 0.09
80 49 0.40
81 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTACTAAA
Found at i:70566813 original size:40 final size:40
Alignment explanation
Indices: 70566583--70566806 Score: 264
Period size: 40 Copynumber: 5.7 Consensus size: 40
70566573 TCGAATGATG
* * *
70566583 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
70566623 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
70566663 T-C-GACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70566701 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70566741 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
70566782 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70566807 AACGAGTAGC
Statistics
Matches: 168, Mismatches: 10, Indels: 12
0.88 0.05 0.06
Matches are distributed among these distances:
38 37 0.22
39 3 0.02
40 119 0.71
41 9 0.05
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70574712 original size:79 final size:80
Alignment explanation
Indices: 70574580--70574802 Score: 267
Period size: 79 Copynumber: 2.8 Consensus size: 80
70574570 TCGAATGATG
* * * * *
70574580 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
70574644 CGTGCGAGTTACTAAA
65 CGTGCGAGTTACTAAA
70574660 TCCGGACTAAGAT-CC-AAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
1 TCCGGACTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
* *
70574723 TGTGTGAGTTACTAAA
65 CGTGCGAGTTACTAAA
** * * *
70574739 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCAT
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCAT
70574802 T
64 T
70574803 TGAACGAGTA
Statistics
Matches: 125, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
78 1 0.01
79 63 0.50
80 58 0.46
81 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTACTAAA
Found at i:70574811 original size:40 final size:40
Alignment explanation
Indices: 70574580--70574804 Score: 264
Period size: 40 Copynumber: 5.7 Consensus size: 40
70574570 TCGAATGATG
* * *
70574580 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
70574620 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
70574660 TCCGGACTAAGAT-CC-AAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
70574699 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70574739 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
70574780 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70574805 AACGAGTAGC
Statistics
Matches: 168, Mismatches: 12, Indels: 10
0.88 0.06 0.05
Matches are distributed among these distances:
39 40 0.24
40 119 0.71
41 9 0.05
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70574837 original size:119 final size:119
Alignment explanation
Indices: 70574580--70574811 Score: 267
Period size: 119 Copynumber: 1.9 Consensus size: 119
70574570 TCGAATGATG
* *
70574580 TCCGGGCTAAG-TCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGACTAAGAT-CCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
**
70574644 CGTGCGAGTTACTAAATCCGGACTAAGATCCAAGGCATTCGTGCGAGTTACTAAA
65 CGTGCGAGTTACTAAATCCGGACTAAGATCCAAGGCATTCGAACGAGTTACTAAA
* * **
70574699 TCCGGACTAAGATCCGAAGGCATTTGTG-TGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGACTAAGATCCGAAGGC-TTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
70574762 TTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGT
64 TCGTGCGAGTTACTA-AATCCGGACTAAGAT-CC-AAGGCATTCGAACGAGT
70574812 AGCTATATCC
Statistics
Matches: 95, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
118 2 0.02
119 70 0.74
120 23 0.24
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (119 bp):
TCCGGACTAAGATCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTACTAAATCCGGACTAAGATCCAAGGCATTCGAACGAGTTACTAAA
Found at i:70576560 original size:23 final size:24
Alignment explanation
Indices: 70576516--70576560 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
70576506 GTCAAAGAGT
* *
70576516 TTTTGAGAAAGAAAAAGAACCAAA
1 TTTTGAGAAAAAAAAACAACCAAA
*
70576540 TTTTGA-AAAAAAAAACTACCA
1 TTTTGAGAAAAAAAAACAACCA
70576561 GATATTCCCT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 12 0.67
24 6 0.33
ACGTcount: A:0.58, C:0.11, G:0.11, T:0.20
Consensus pattern (24 bp):
TTTTGAGAAAAAAAAACAACCAAA
Found at i:70578288 original size:16 final size:18
Alignment explanation
Indices: 70578255--70578288 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
70578245 TCAGGCTATA
70578255 TCAGAACAGAAGCTTGAG
1 TCAGAACAGAAGCTTGAG
70578273 TCAGAACA-AA-CTTGAG
1 TCAGAACAGAAGCTTGAG
70578289 CTTCTCAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 2 0.12
18 8 0.50
ACGTcount: A:0.41, C:0.18, G:0.24, T:0.18
Consensus pattern (18 bp):
TCAGAACAGAAGCTTGAG
Found at i:70582211 original size:29 final size:29
Alignment explanation
Indices: 70582178--70582248 Score: 142
Period size: 29 Copynumber: 2.4 Consensus size: 29
70582168 GACGAGATTA
70582178 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
70582207 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
70582236 GCACTAAGTGTGC
1 GCACTAAGTGTGC
70582249 GAGCTCGAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (29 bp):
GCACTAAGTGTGCATGCTGGAAATATATG
Found at i:70582264 original size:29 final size:29
Alignment explanation
Indices: 70582178--70582308 Score: 106
Period size: 29 Copynumber: 4.5 Consensus size: 29
70582168 GACGAGATTA
* **
70582178 GCACTAAGTGTGC-ATGCTGGAAATATATG
1 GCACTAAGTGTGCGA-GCTCGAAACGTATG
* **
70582207 GCACTAAGTGTGC-ATGCTGGAAATATATG
1 GCACTAAGTGTGCGA-GCTCGAAACGTATG
**
70582236 GCACTAAGTGTGCGAGCTCGAAGGGTATG
1 GCACTAAGTGTGCGAGCTCGAAACGTATG
* * * *
70582265 GCACTATGTGTGCGGGCT-TAAATCGCATG
1 GCACTAAGTGTGCGAGCTCGAAA-CGTATG
70582294 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
70582309 AATCAAGTAT
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
28 2 0.02
29 85 0.97
30 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTCGAAACGTATG
Found at i:70584591 original size:29 final size:28
Alignment explanation
Indices: 70584526--70584655 Score: 106
Period size: 29 Copynumber: 4.6 Consensus size: 28
70584516 TACATCCATG
70584526 CATATGGCCCA-CTAGGCCCAATCTCA-TT
1 CATATGGCCCATCT-GGCCCAAT-TCACTT
* *
70584554 TATATGGCCTATCTGGCCCAATTCACGTT
1 CATATGGCCCATCTGGCCCAATTCAC-TT
* *
70584583 CATATGGCCCATCAGGACCAATTCACATT
1 CATATGGCCCATCTGGCCCAATTCAC-TT
* * *
70584612 CCTATGGCCTAT-TAGGTCCAATCTC-CTT
1 CATATGGCCCATCT-GGCCCAAT-TCACTT
*
70584640 TATATGGCCCATCTGG
1 CATATGGCCCATCTGG
70584656 AACAAATCAC
Statistics
Matches: 82, Mismatches: 14, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
27 3 0.04
28 30 0.37
29 47 0.57
30 2 0.02
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (28 bp):
CATATGGCCCATCTGGCCCAATTCACTT
Found at i:70584773 original size:19 final size:19
Alignment explanation
Indices: 70584740--70584785 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
70584730 ATGGCCCAAC
* *
70584740 AGCCCA-TCGGGCCCATTT
1 AGCCCATTCCGGCCCATTA
70584758 AGCCCATTCCGGCCCATTA
1 AGCCCATTCCGGCCCATTA
*
70584777 AGCCAATTC
1 AGCCCATTC
70584786 ACAGCCCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 6 0.25
19 18 0.75
ACGTcount: A:0.22, C:0.39, G:0.17, T:0.22
Consensus pattern (19 bp):
AGCCCATTCCGGCCCATTA
Found at i:70592331 original size:28 final size:28
Alignment explanation
Indices: 70592300--70592357 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 28
70592290 GCCCAAAAAC
70592300 CCTACATC-CATGCATATGACCCATTAGG
1 CCTA-ATCTCATGCATATGACCCATTAGG
** * *
70592328 CCTAATCTCATTTATATGGCCCATTCGG
1 CCTAATCTCATGCATATGACCCATTAGG
70592356 CC
1 CC
70592358 CAATTCACGT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
27 3 0.12
28 22 0.88
ACGTcount: A:0.24, C:0.33, G:0.14, T:0.29
Consensus pattern (28 bp):
CCTAATCTCATGCATATGACCCATTAGG
Found at i:70592443 original size:28 final size:29
Alignment explanation
Indices: 70592312--70592458 Score: 133
Period size: 29 Copynumber: 5.2 Consensus size: 29
70592302 TACATCCATG
* * *
70592312 CATATGACCCATTAGGCCTAA-TCTCATT
1 CATATGGCCCATTAGGCCCAATTCACATT
* * *
70592340 TATATGGCCCATTCGGCCCAATTCACGTT
1 CATATGGCCCATTAGGCCCAATTCACATT
* *
70592369 CATATGGCCTATTAGGACCAATTCACATT
1 CATATGGCCCATTAGGCCCAATTCACATT
* *
70592398 CCTACGGCCCATTAGGCCCAATCTC-C-TT
1 CATATGGCCCATTAGGCCCAAT-TCACATT
* *
70592426 TATATGGCCCATCT-GGCCCAAATCACATT
1 CATATGGCCCAT-TAGGCCCAATTCACATT
70592455 -ATAT
1 CATAT
70592459 TCATGCTCAC
Statistics
Matches: 95, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
27 2 0.02
28 40 0.42
29 51 0.54
30 2 0.02
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.30
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAATTCACATT
Found at i:70592559 original size:19 final size:19
Alignment explanation
Indices: 70592525--70592571 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
70592515 TATGGCCCAA
70592525 TAGCCCA-TCGGGCCCATT
1 TAGCCCATTCGGGCCCATT
*
70592543 TAGCCCATTCTGGCCCATT
1 TAGCCCATTCGGGCCCATT
* *
70592562 AAGCCAATTC
1 TAGCCCATTC
70592572 AAAACCCAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 7 0.28
19 18 0.72
ACGTcount: A:0.21, C:0.36, G:0.17, T:0.26
Consensus pattern (19 bp):
TAGCCCATTCGGGCCCATT
Found at i:70596185 original size:20 final size:21
Alignment explanation
Indices: 70596146--70596185 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
70596136 TAATTAATGG
*
70596146 CTACATGGGCGTGTTGCCCTT
1 CTACACGGGCGTGTTGCCCTT
70596167 CTACACGGGCGTG-TGCCCT
1 CTACACGGGCGTGTTGCCCT
70596186 GTTCCAAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.33, G:0.30, T:0.28
Consensus pattern (21 bp):
CTACACGGGCGTGTTGCCCTT
Found at i:70603878 original size:75 final size:75
Alignment explanation
Indices: 70603707--70603880 Score: 253
Period size: 75 Copynumber: 2.3 Consensus size: 75
70603697 GACATAGGGG
* **
70603707 CACGCCTGTGTCCTCAGGCCGCGTAACTCTCTGTTTATGACGTCAGCACACAAATTGAACCACCT
1 CACGCCCGTGTCCTCAGGCCGTATAACTCTCTGTTTATGACGTCAGCACACAAATTGAACCACCT
70603772 AGCCAGGCTA
66 AGCCAGGCTA
**
70603782 CACGCCCGTGTCCTCAGGCCGTATAACTCTCTGTTTATGACGTCAGCATGCAAATTGAACCACAC
1 CACGCCCGTGTCCTCAGGCCGTATAACTCTCTGTTTATGACGTCAGCACACAAATTGAACCAC-C
*
70603847 -GGCCAGGCTA
65 TAGCCAGGCTA
*
70603857 CACGCTCGTGT-CTCCAGGCCGTAT
1 CACGCCCGTGTCCT-CAGGCCGTAT
70603881 CCCTCACACG
Statistics
Matches: 90, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
74 2 0.02
75 87 0.97
76 1 0.01
ACGTcount: A:0.22, C:0.33, G:0.21, T:0.23
Consensus pattern (75 bp):
CACGCCCGTGTCCTCAGGCCGTATAACTCTCTGTTTATGACGTCAGCACACAAATTGAACCACCT
AGCCAGGCTA
Found at i:70605599 original size:59 final size:59
Alignment explanation
Indices: 70605523--70605701 Score: 279
Period size: 59 Copynumber: 3.0 Consensus size: 59
70605513 AGTACCACAG
* * *
70605523 ATCACAGAATCACATGCCTCTCAATGGGGCTACTCAAAAGCACCTGGACCCTAGCATGT
1 ATCACATAATCACATGCCTCTCAATGGGGATACTCAAAAGCACCCGGACCCTAGCATGT
* * *
70605582 ATCACAT-ATCCACATGCCTCTTAATGGGGTTACTGAAAAGCACCCGGACCCTAGCATGT
1 ATCACATAAT-CACATGCCTCTCAATGGGGATACTCAAAAGCACCCGGACCCTAGCATGT
*
70605641 ATCACATAATCACATGCCTCTCAACGGGGATACTCAAAAGCACCCGGACCCTAGCATGT
1 ATCACATAATCACATGCCTCTCAATGGGGATACTCAAAAGCACCCGGACCCTAGCATGT
70605700 AT
1 AT
70605702 TACGTATCAA
Statistics
Matches: 109, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
58 2 0.02
59 105 0.96
60 2 0.02
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (59 bp):
ATCACATAATCACATGCCTCTCAATGGGGATACTCAAAAGCACCCGGACCCTAGCATGT
Found at i:70609860 original size:28 final size:28
Alignment explanation
Indices: 70609791--70609891 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
70609781 GACAAGATTG
* * * *
70609791 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
70609821 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70609849 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
70609878 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
70609892 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:70621389 original size:13 final size:14
Alignment explanation
Indices: 70621373--70621401 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
70621363 GGCGTGTGAC
70621373 ACACCCGT-GTCGA
1 ACACCCGTGGTCGA
70621386 ACACCCGTGGTCGA
1 ACACCCGTGGTCGA
70621400 AC
1 AC
70621402 CTGTCAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.24, C:0.38, G:0.24, T:0.14
Consensus pattern (14 bp):
ACACCCGTGGTCGA
Found at i:70638420 original size:40 final size:40
Alignment explanation
Indices: 70638293--70638422 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
70638283 ATGCTGGAAA
* *
70638293 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
70638333 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
70638373 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
70638413 TTATATCCGG
1 TTATATCCGG
70638423 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:70646346 original size:40 final size:40
Alignment explanation
Indices: 70646219--70646348 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
70646209 ATGCTGGAAA
* *
70646219 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
70646259 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
70646299 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
70646339 TTATATCCGG
1 TTATATCCGG
70646349 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:70648796 original size:34 final size:34
Alignment explanation
Indices: 70648742--70648810 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 34
70648732 GCACAGTTAA
* *
70648742 AACAGTCTTGGGCCCAAGCCCTTTTCAGTATCAGT
1 AACAGTCTTGGGCCCAAGCCCATCTCAGTA-CAGT
**
70648777 AACAGT-TTGGGCCTTAGCCCATCTCAGTACAGT
1 AACAGTCTTGGGCCCAAGCCCATCTCAGTACAGT
70648810 A
1 A
70648811 TCGAATATGC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 5 0.17
34 19 0.63
35 6 0.20
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (34 bp):
AACAGTCTTGGGCCCAAGCCCATCTCAGTACAGT
Found at i:70650010 original size:23 final size:25
Alignment explanation
Indices: 70649965--70650010 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 25
70649955 AAAAAAGAGT
*
70649965 TTTTTGAGAAAGAAAAAGAACCAAA
1 TTTTTGAGAAAGAAAAACAACCAAA
*
70649990 TTTTTGA-AAA-AAAAACTACCA
1 TTTTTGAGAAAGAAAAACAACCA
70650011 GATATTCCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 9 0.47
24 3 0.16
25 7 0.37
ACGTcount: A:0.54, C:0.11, G:0.11, T:0.24
Consensus pattern (25 bp):
TTTTTGAGAAAGAAAAACAACCAAA
Found at i:70651746 original size:16 final size:18
Alignment explanation
Indices: 70651713--70651746 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
70651703 TCAGGCTATA
70651713 TCAGAACAGAAGCTTGAG
1 TCAGAACAGAAGCTTGAG
70651731 TCAGAACA-AA-CTTGAG
1 TCAGAACAGAAGCTTGAG
70651747 CTTCTCAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 2 0.12
18 8 0.50
ACGTcount: A:0.41, C:0.18, G:0.24, T:0.18
Consensus pattern (18 bp):
TCAGAACAGAAGCTTGAG
Found at i:70654973 original size:29 final size:29
Alignment explanation
Indices: 70654908--70655035 Score: 124
Period size: 29 Copynumber: 4.5 Consensus size: 29
70654898 TACATCCATG
70654908 CATATGGCCCA-CTAGGCCCAATCTCA-TT
1 CATATGGCCCATCTAGGCCCAAT-TCACTT
* *
70654936 TATATGGCCTATCT-GGCCCAATTCACGTT
1 CATATGGCCCATCTAGGCCCAATTCAC-TT
*
70654965 CATATGGCCCAT-TAGGACCAATTCACATT
1 CATATGGCCCATCTAGGCCCAATTCAC-TT
* *
70654994 CCTATGGCCCAT-TAGGCCCAATCTC-TTT
1 CATATGGCCCATCTAGGCCCAAT-TCACTT
*
70655022 TATATGGCCCATCT
1 CATATGGCCCATCT
70655036 GGAACAAATC
Statistics
Matches: 83, Mismatches: 11, Indels: 11
0.79 0.10 0.10
Matches are distributed among these distances:
27 3 0.04
28 30 0.36
29 48 0.58
30 2 0.02
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.30
Consensus pattern (29 bp):
CATATGGCCCATCTAGGCCCAATTCACTT
Found at i:70655027 original size:57 final size:57
Alignment explanation
Indices: 70654908--70655054 Score: 140
Period size: 57 Copynumber: 2.6 Consensus size: 57
70654898 TACATCCATG
* * * * *
70654908 CATATGGCCCACTAGGCCCAATCTCATTTATATGGCCTATCTGGCCCAATTCACGTT
1 CATATGGCCCATTAGGACCAATCACATTCATATGGCCCATCTGGCCCAATTCACGTT
* * *
70654965 CATATGGCCCATTAGGACCAATTCACATTCCTATGGCCCAT-TAGGCCCAA-TCTCTTT
1 CATATGGCCCATTAGGACCAA-TCACATTCATATGGCCCATCT-GGCCCAATTCACGTT
* *
70655022 TATATGGCCCATCT-GGAACAAATCACATT-ATAT
1 CATATGGCCCAT-TAGG-ACCAATCACATTCATAT
70655055 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 11, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
56 3 0.04
57 45 0.60
58 27 0.36
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (57 bp):
CATATGGCCCATTAGGACCAATCACATTCATATGGCCCATCTGGCCCAATTCACGTT
Found at i:70655155 original size:19 final size:19
Alignment explanation
Indices: 70655122--70655167 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
70655112 ATGGCCCAGC
* *
70655122 AGCCCA-TCGGGCCCATTT
1 AGCCCATTCCGGCCCATTA
70655140 AGCCCATTCCGGCCCATTA
1 AGCCCATTCCGGCCCATTA
*
70655159 AGCCAATTC
1 AGCCCATTC
70655168 ACAGCCCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 6 0.25
19 18 0.75
ACGTcount: A:0.22, C:0.39, G:0.17, T:0.22
Consensus pattern (19 bp):
AGCCCATTCCGGCCCATTA
Found at i:70664762 original size:20 final size:21
Alignment explanation
Indices: 70664723--70664762 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
70664713 TAATTAATGG
70664723 CTACACGGGCGTGTTGCCCTT
1 CTACACGGGCGTGTTGCCCTT
70664744 CTACACGGGCGTG-TGCCCT
1 CTACACGGGCGTGTTGCCCT
70664763 GTTCAAAAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.10, C:0.35, G:0.30, T:0.25
Consensus pattern (21 bp):
CTACACGGGCGTGTTGCCCTT
Found at i:70665669 original size:21 final size:21
Alignment explanation
Indices: 70665631--70665670 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
70665621 AACCAGAACA
* *
70665631 TTTTAGAAATCCATTTTTTAT
1 TTTTAGAAAACCACTTTTTAT
*
70665652 TTTTAGAAAACCCCTTTTT
1 TTTTAGAAAACCACTTTTT
70665671 GACGTAAAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.15, G:0.05, T:0.53
Consensus pattern (21 bp):
TTTTAGAAAACCACTTTTTAT
Found at i:70668040 original size:40 final size:40
Alignment explanation
Indices: 70667888--70668033 Score: 181
Period size: 40 Copynumber: 3.6 Consensus size: 40
70667878 TCGAATGATG
* * * *
70667888 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
70667928 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70667968 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
70668009 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70668034 AACGAGTGCT
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
39 1 0.01
40 82 0.88
41 10 0.11
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70675382 original size:40 final size:40
Alignment explanation
Indices: 70675274--70675523 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
70675264 CGGGATTTAA
* * * * *
70675274 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
70675314 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
70675354 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
70675394 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
70675434 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
70675474 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
70675514 CCGGATATAT
1 CCGGATATAT
70675524 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:70679341 original size:40 final size:39
Alignment explanation
Indices: 70679266--70679422 Score: 140
Period size: 40 Copynumber: 3.9 Consensus size: 39
70679256 TGTCCGGGCC
* * * *
70679266 AAGTCCCAAAGGC-TTTGTGCTAAGTGACTATATCCGGACT
1 AAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGG-CT
*
70679306 AAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTT
1 AAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC-GGCT
*
70679346 AATTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCAGGCT
1 AAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCC-GGCT
* ** * *
70679386 ATGTCCCGAAGGCATTTGAACGAGTTGCTATATCCGG
1 AAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGG
70679423 TTAAACTCCA
Statistics
Matches: 97, Mismatches: 14, Indels: 13
0.78 0.11 0.10
Matches are distributed among these distances:
39 4 0.04
40 81 0.84
41 12 0.12
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (39 bp):
AAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGCT
Found at i:70687799 original size:49 final size:50
Alignment explanation
Indices: 70687736--70687864 Score: 163
Period size: 49 Copynumber: 2.6 Consensus size: 50
70687726 ACATTAAAGT
*
70687736 CGATGCCATGTCCCAGACAGGTCTTACACTGA-CTTTCATATATTGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGAGCTCTCATATATTGAGGC
* * * * ** *
70687785 CGATGCCGTATCCCAAACAGGTCTTACACT-AGCTCTCATCTATTGTTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGAGCTCTCATATATTGAGGC
*
70687834 CGATGACATGTCCCAGACAGGTCTTACACTG
1 CGATGCCATGTCCCAGACAGGTCTTACACTG
70687865 GCACACAACA
Statistics
Matches: 66, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
48 1 0.02
49 65 0.98
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (50 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGAGCTCTCATATATTGAGGC
Found at i:70688024 original size:46 final size:46
Alignment explanation
Indices: 70687884--70688059 Score: 142
Period size: 46 Copynumber: 3.8 Consensus size: 46
70687874 AAGCTAACAC
* * * * *
70687884 CATGTCTCAGACAGGTCTTACACTAGCT-TGTATATTC-AAGACTGATG
1 CATGTCCCAAACATGTCTTACACTAGCTCT-CATA-TCAAAG-CCGATG
* * * *
70687931 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAAGCCAATG
1 CATGTCCCAAACATGTCTTACACTAGCTCTCATATCAAAGCCGATG
** *
70687977 CATGTCCCAAACATGTCTTACACTAGCTCTCATAAT-ATGGTCGATG
1 CATGTCCCAAACATGTCTTACACTAGCTCTCAT-ATCAAAGCCGATG
* * * * *
70688023 CATGTCACATATATGTCTTACACTAGCACACATATCA
1 CATGTCCCAAACATGTCTTACACTAGCTCTCATATCA
70688060 CCTAATGTAA
Statistics
Matches: 106, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
45 2 0.02
46 72 0.68
47 31 0.29
48 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.30
Consensus pattern (46 bp):
CATGTCCCAAACATGTCTTACACTAGCTCTCATATCAAAGCCGATG
Found at i:70692212 original size:15 final size:15
Alignment explanation
Indices: 70692188--70692227 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
70692178 GTTTTTCTTT
*
70692188 CAAC-ATAACTATTC
1 CAACAATAACTACTC
70692202 CAACAATAACTACTC
1 CAACAATAACTACTC
*
70692217 CAACAGTAACT
1 CAACAATAACT
70692228 TTTTCAACGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 4 0.17
15 19 0.83
ACGTcount: A:0.45, C:0.30, G:0.03, T:0.23
Consensus pattern (15 bp):
CAACAATAACTACTC
Found at i:70692352 original size:7 final size:7
Alignment explanation
Indices: 70692340--70692412 Score: 51
Period size: 7 Copynumber: 10.6 Consensus size: 7
70692330 TCTAAATTCC
70692340 CAATCTT
1 CAATCTT
70692347 CAATCTT
1 CAATCTT
* *
70692354 TAATCCT
1 CAATCTT
*
70692361 CAGT-TT
1 CAATCTT
*
70692367 CAATATT
1 CAATCTT
*
70692374 CAATTTT
1 CAATCTT
*
70692381 CAATTTT
1 CAATCTT
70692388 CAAT-TT
1 CAATCTT
*
70692394 CAAATTTT
1 C-AATCTT
*
70692402 CAATCCT
1 CAATCTT
70692409 CAAT
1 CAAT
70692413 TATTATTTTT
Statistics
Matches: 54, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
6 7 0.13
7 44 0.81
8 3 0.06
ACGTcount: A:0.32, C:0.22, G:0.01, T:0.45
Consensus pattern (7 bp):
CAATCTT
Found at i:70692390 original size:21 final size:21
Alignment explanation
Indices: 70692364--70692405 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
70692354 TAATCCTCAG
70692364 TTTCAATATTC-AATTTTCAAT
1 TTTCAAT-TTCAAATTTTCAAT
70692385 TTTCAATTTCAAATTTTCAAT
1 TTTCAATTTCAAATTTTCAAT
70692406 CCTCAATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.33, C:0.14, G:0.00, T:0.52
Consensus pattern (21 bp):
TTTCAATTTCAAATTTTCAAT
Found at i:70692411 original size:21 final size:20
Alignment explanation
Indices: 70692366--70692413 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
70692356 ATCCTCAGTT
**
70692366 TCAATATTCAATTTTCAATTT
1 TCAAT-TTCAATTTTCAATCC
70692387 TCAATTTCAAATTTTCAATCC
1 TCAATTTC-AATTTTCAATCC
70692408 TCAATT
1 TCAATT
70692414 ATTATTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 3 0.12
21 21 0.88
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.48
Consensus pattern (20 bp):
TCAATTTCAATTTTCAATCC
Found at i:70692413 original size:14 final size:13
Alignment explanation
Indices: 70692364--70692405 Score: 57
Period size: 14 Copynumber: 3.1 Consensus size: 13
70692354 TAATCCTCAG
*
70692364 TTTCAATATTCAA
1 TTTCAATTTTCAA
70692377 TTTTCAATTTTCAA
1 -TTTCAATTTTCAA
70692391 TTTCAAATTTTCAA
1 TTTC-AATTTTCAA
70692405 T
1 T
70692406 CCTCAATTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 4 0.15
14 22 0.85
ACGTcount: A:0.33, C:0.14, G:0.00, T:0.52
Consensus pattern (13 bp):
TTTCAATTTTCAA
Found at i:70694196 original size:63 final size:63
Alignment explanation
Indices: 70694111--70694234 Score: 142
Period size: 63 Copynumber: 2.0 Consensus size: 63
70694101 GAATCACAAC
* * * * *
70694111 ATGCACACTCATTCCCCACATCATCACCTTCAA-TTCTGATTTATTTTACACAACCACCATAAT
1 ATGCACAATCATTCCCCACATCAACACATTCAACATC-AATTTATTTTACACAACCACCATAAT
*** * *
70694174 ATGCACAATCATTCCTTGCATCAACACATTTAACATCAATTTATTTTACACAAGCACCATA
1 ATGCACAATCATTCCCCACATCAACACATTCAACATCAATTTATTTTACACAACCACCATA
70694235 GCACGCGCAA
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
63 48 0.96
64 2 0.04
ACGTcount: A:0.35, C:0.30, G:0.04, T:0.31
Consensus pattern (63 bp):
ATGCACAATCATTCCCCACATCAACACATTCAACATCAATTTATTTTACACAACCACCATAAT
Found at i:70698848 original size:29 final size:29
Alignment explanation
Indices: 70698808--70698910 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
70698798 GTTGAGAGAT
*
70698808 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
70698837 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
70698866 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
70698895 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
70698911 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:70714866 original size:29 final size:29
Alignment explanation
Indices: 70714826--70714928 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
70714816 GTTGAGAGAT
*
70714826 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
70714855 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
70714884 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
70714913 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
70714929 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:70722929 original size:29 final size:29
Alignment explanation
Indices: 70722892--70722962 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
70722882 GAGAGATTGA
* *
70722892 CACTGAGTGTGCGAGCTTGAAA-TGCATGG
1 CACTAAGTGTGCGAG-TTGAAAGTACATGG
* *
70722921 CACTAAGTGTGCGAGTTTAAAGTATATGG
1 CACTAAGTGTGCGAGTTGAAAGTACATGG
70722950 CACTAAGTGTGCG
1 CACTAAGTGTGCG
70722963 CGGCTGATTA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 5 0.14
29 32 0.86
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
CACTAAGTGTGCGAGTTGAAAGTACATGG
Found at i:70736541 original size:27 final size:27
Alignment explanation
Indices: 70736511--70736708 Score: 238
Period size: 27 Copynumber: 7.3 Consensus size: 27
70736501 TACTGCAATG
**
70736511 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* * *
70736538 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTACAGAATTACCATTTTA
*
70736565 CCCTCGATTTACAAAATTA-CAGTTTTA
1 CCCTCGATTTACAGAATTACCA-TTTTA
*
70736592 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
70736619 CCCTCGATTTACAGAGTTACCGTTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
*
70736646 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* ***
70736673 CCCTC-AGTTTACAAAATTATTGTTTTA
1 CCCTCGA-TTTACAGAATTACCATTTTA
70736700 CCCTCGATT
1 CCCTCGATT
70736709 GTGAAATTAC
Statistics
Matches: 149, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
26 2 0.01
27 144 0.97
28 3 0.02
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCATTTTA
Found at i:70736626 original size:81 final size:81
Alignment explanation
Indices: 70736511--70736708 Score: 283
Period size: 81 Copynumber: 2.4 Consensus size: 81
70736501 TACTGCAATG
* *
70736511 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
70736576 CAAAATTA-CAGTTTTA
66 CAAAATTACCA-TTTTA
* *
70736592 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAGTTACCGTTTTACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
70736657 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * ***
70736673 CCCTC-AGTTTACAAAATTATTGTTTTACCCTCGATT
1 CCCTCGA-TTTATAGAATTACCATTTTACCCTCGATT
70736709 GTGAAATTAC
Statistics
Matches: 106, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
80 1 0.01
81 103 0.97
82 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:70736750 original size:27 final size:27
Alignment explanation
Indices: 70736707--70736863 Score: 206
Period size: 27 Copynumber: 5.8 Consensus size: 27
70736697 TTACCCTCGA
* *
70736707 TTGTGAAATTACTAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCTTGGT
* * *
70736734 TTATAAAATCACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCTTGGT
* *
70736761 TTGTAAAATTACTAGAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCTTGGT
* * * *
70736788 TTATAAAATCACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCTTGGT
70736815 TTGTAAAATTACCAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCTTGGT
*
70736842 TTGTAAAATTATCAAAATACCC
1 TTGTAAAATTACCAAAATACCC
70736864 CTGTAGGGTA
Statistics
Matches: 109, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 109 1.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCTTGGT
Found at i:70736782 original size:54 final size:54
Alignment explanation
Indices: 70736707--70736866 Score: 257
Period size: 54 Copynumber: 3.0 Consensus size: 54
70736697 TTACCCTCGA
*
70736707 TTGTGAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGT
1 TTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGT
* *
70736761 TTGTAAAATTACTAGAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGT
1 TTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGT
* * * *
70736815 TTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTATCAAAATACCCCTG
1 TTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTG
70736867 TAGGGTAGAA
Statistics
Matches: 97, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 97 1.00
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (54 bp):
TTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGT
Found at i:70736878 original size:27 final size:27
Alignment explanation
Indices: 70736848--70737378 Score: 683
Period size: 27 Copynumber: 19.6 Consensus size: 27
70736838 TGGTTTGTAA
*
70736848 AATTATCAAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
70736875 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
70736902 AATTA-CCAGAATACCCCTGTAGGGTAG
1 AATTATCGA-AATACCCCTGTAGGGTAG
*
70736929 AATTA-CCAGAATACCCCTGTAGGGTAG
1 AATTATCGA-AATACCCCTGTAGGGTAG
* *
70736956 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* * *
70736983 AATTATCAAAATACCCCTATAAGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
70737010 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* * *
70737037 AATTACCGGAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
70737064 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
70737091 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* * *
70737118 AAATA-CCAGAATACCCCTGAAGGGTAG
1 AATTATCGA-AATACCCCTGTAGGGTAG
* *
70737145 AATTATCAAAATACCCCTATAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
70737172 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
70737199 AATTATTATCGCAATACCCCTGTAGGGTAG
1 -A--ATTATCGAAATACCCCTGTAGGGTAG
* *
70737229 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
70737256 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* * *
70737283 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
70737310 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
70737337 AATTA-CTGAAATACCCCTGTAGGGTAG
1 AATTATC-GAAATACCCCTGTAGGGTAG
*
70737364 AATTATCGAGATACC
1 AATTATCGAAATACC
70737379 TTGTAAGGTA
Statistics
Matches: 453, Mismatches: 42, Indels: 18
0.88 0.08 0.04
Matches are distributed among these distances:
26 4 0.01
27 416 0.92
28 6 0.01
29 1 0.00
30 26 0.06
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTATCGAAATACCCCTGTAGGGTAG
Found at i:70736879 original size:54 final size:54
Alignment explanation
Indices: 70736798--70737397 Score: 603
Period size: 54 Copynumber: 11.1 Consensus size: 54
70736788 TTATAAAATC
** * ** *
70736798 ACCAAAATACCCCTAGT-TTGTAAAATTACCAAAATACCCTTGGT-TTGTAAAATT
1 ACCAAAATACCCCT-GTAGGGTAGAATTACCAAAATACCCTT-GTAGGGTAGAATT
* * ** *
70736852 ATCAAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATT
1 ACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTAGAATT
* * *
70736906 ACCAGAATACCCCTGTAGGGTAGAATTACCAGAATACCCCTGTAGGGTAGAATT
1 ACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTAGAATT
* * * *
70736960 ACCAAAATACCCCTGTAGGGTAGAATTATCAAAATACCCCTATAAGGTAGAATT
1 ACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTAGAATT
* ** **
70737014 ATCGCAATACCCCTGTAGGGTAGAATTACCGGAATACCCTTGTAGGGTAGAATT
1 ACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTAGAATT
* ** * * *
70737068 ATCGCAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAAT
1 ACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTAGAATT
* * * * *
70737122 ACCAGAATACCCCTGAAGGGTAGAATTATCAAAATACCCCTATAGGGTAGAATT
1 ACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTAGAATT
* ** * ** *
70737176 ATCGCAATACCCCTGTAGGGTAGAATTATTATCGCAATACCCCTGTAGGGTAGAATT
1 ACCAAAATACCCCTGTAGGGTAG-A--ATTACCAAAATACCCTTGTAGGGTAGAATT
* * ** * *
70737233 ACCGAAATACCCCTGTAAGGTAGAATTACCGGAATACCCCTGTAGGGTAGAAAT
1 ACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTAGAATT
* * * * *
70737287 ACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATT
1 ACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTAGAATT
** * * * * *
70737341 ACTGAAATACCCCTGTAGGGTAGAATTATCGAGATA-CCTTGTAAGGTAAAATT
1 ACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTAGAATT
70737394 ACCA
1 ACCA
70737398 TTTTGCCCCT
Statistics
Matches: 472, Mismatches: 69, Indels: 11
0.86 0.12 0.02
Matches are distributed among these distances:
53 20 0.04
54 403 0.85
55 1 0.00
56 1 0.00
57 47 0.10
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (54 bp):
ACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTAGAATT
Found at i:70737829 original size:19 final size:19
Alignment explanation
Indices: 70737801--70737865 Score: 63
Period size: 19 Copynumber: 3.8 Consensus size: 19
70737791 CATTCACATT
*
70737801 CTGATTTTGATTCTGTTAC
1 CTGATATTGATTCTGTTAC
70737820 CTGATATTGATTCTG--A-
1 CTGATATTGATTCTGTTAC
70737836 -T--T-TTGATTCTGTTAC
1 CTGATATTGATTCTGTTAC
*
70737851 CTGATACTGATTCTG
1 CTGATATTGATTCTG
70737866 ATTCTGATTC
Statistics
Matches: 37, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
12 9 0.24
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 22 0.59
ACGTcount: A:0.18, C:0.15, G:0.17, T:0.49
Consensus pattern (19 bp):
CTGATATTGATTCTGTTAC
Found at i:70737836 original size:6 final size:6
Alignment explanation
Indices: 70737798--70737885 Score: 67
Period size: 6 Copynumber: 14.3 Consensus size: 6
70737788 TTGCATTCAC
* *
70737798 ATTCTG ATTTTG ATTCTG -TTACCTG ATAT-TG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG
*
70737847 -TTACCTG ATACTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
70737886 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 6, Indels: 20
0.72 0.07 0.22
Matches are distributed among these distances:
5 6 0.09
6 50 0.76
7 7 0.11
8 2 0.03
9 1 0.02
ACGTcount: A:0.19, C:0.15, G:0.16, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:70737836 original size:31 final size:31
Alignment explanation
Indices: 70737798--70737876 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
70737788 TTGCATTCAC
*
70737798 ATTCTGATTTTGATTCTGTTACCTGATATTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
70737829 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
70737860 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
70737877 AGTTCTGATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:70743848 original size:14 final size:14
Alignment explanation
Indices: 70743829--70743866 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
70743819 CCTCCCTTAG
70743829 GTACGATCCTCGGA
1 GTACGATCCTCGGA
*
70743843 GTACGATCTTCGGA
1 GTACGATCCTCGGA
70743857 GTACGATCCT
1 GTACGATCCT
70743867 TACTCTGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (14 bp):
GTACGATCCTCGGA
Found at i:70746729 original size:22 final size:22
Alignment explanation
Indices: 70746696--70746749 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
70746686 TGTCCTTGGT
* * *
70746696 TCACACAGGCGTGTGCCTCTTC
1 TCACACAGGCGTGTACCCCTCC
70746718 TCACAC-GAGCGTGTACCCCTCC
1 TCACACAG-GCGTGTACCCCTCC
70746740 TCACACAGGC
1 TCACACAGGC
70746750 ATTTGACCTC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 1 0.04
22 25 0.93
23 1 0.04
ACGTcount: A:0.19, C:0.41, G:0.20, T:0.20
Consensus pattern (22 bp):
TCACACAGGCGTGTACCCCTCC
Found at i:70748901 original size:68 final size:67
Alignment explanation
Indices: 70748828--70748977 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
70748818 TATCATGTGT
* * * *
70748828 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
70748890 ATGTAG
62 ATGTAG
** * *
70748896 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
70748961 AG
66 AG
70748963 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
70748978 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:70748933 original size:64 final size:64
Alignment explanation
Indices: 70748852--70749031 Score: 186
Period size: 67 Copynumber: 2.8 Consensus size: 64
70748842 AGACATTATG
* *
70748852 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
70748916 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
70748981 AA
63 AA
* * * *
70748983 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGA
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGA
70749032 AAGCCGAACT
Statistics
Matches: 94, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 15 0.16
64 21 0.22
65 8 0.09
66 16 0.17
67 31 0.33
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:70753742 original size:2 final size:2
Alignment explanation
Indices: 70753735--70753770 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
70753725 GCTCTTGCAC
70753735 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
70753771 GTTTGCACAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:70754643 original size:40 final size:40
Alignment explanation
Indices: 70754478--70754663 Score: 193
Period size: 40 Copynumber: 4.7 Consensus size: 40
70754468 TCAAATGATG
* * *
70754478 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
70754518 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
**
70754558 TCCGAACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
* *
70754598 TCCGGGTTAAG-TCCTGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGATCC-GAAGGCATTTGTGCGAGTTACTA-AA
* *
70754639 -CCGGGCTATG-TCCCAAAGGCATTTG
1 TCCGGGCTAAGAT-CCGAAGGCATTTG
70754664 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 3 0.02
40 112 0.89
41 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70754658 original size:80 final size:81
Alignment explanation
Indices: 70754478--70754663 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 81
70754468 TCAAATGATG
*
70754478 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
70754542 CGTGCGAGTTACTAAA
66 CGTGCGAGTTACTAAA
** * * **
70754558 TCCGAACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCTGAAGGCA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCC-GAAGGCA
70754620 -TCTGTGCGAGTTACTATAA
64 TTC-GTGCGAGTTACTA-AA
* *
70754639 -CCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70754664 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
79 6 0.07
80 73 0.82
81 10 0.11
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTACTAAA
Found at i:70758924 original size:40 final size:40
Alignment explanation
Indices: 70758869--70759078 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
70758859 AACATTGGAA
70758869 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
70758909 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
70758949 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
70758989 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
70759028 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
70759069 CTATATCCGG
1 ATATATCCGG
70759079 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:70767051 original size:40 final size:40
Alignment explanation
Indices: 70766996--70767205 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
70766986 AACATTGGAA
70766996 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
70767036 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
70767076 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
70767116 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
70767155 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
70767196 CTATATCCGG
1 ATATATCCGG
70767206 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:70771797 original size:30 final size:30
Alignment explanation
Indices: 70771753--70771841 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
70771743 CAAAGATAAC
*
70771753 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
70771782 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
70771812 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
70771842 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:70771801 original size:15 final size:14
Alignment explanation
Indices: 70771753--70771835 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
70771743 CAAAGATAAC
*
70771753 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
70771767 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
70771782 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
70771797 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
70771812 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
70771827 AAGAAACCC
1 AAGAAACCC
70771836 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:70771841 original size:15 final size:15
Alignment explanation
Indices: 70771764--70771841 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
70771754 AGAAAACCGA
70771764 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
70771779 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
70771793 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
70771808 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
70771824 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
70771839 ATA
1 ATA
70771842 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:70774899 original size:93 final size:93
Alignment explanation
Indices: 70774787--70774957 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
70774777 GCCCATAAGT
* *
70774787 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70774852 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
70774880 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70774945 CGAGTTCGGATGC
66 CGAGTTCGGATGC
70774958 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:70774954 original size:46 final size:46
Alignment explanation
Indices: 70774779--70774954 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
70774769 TGTAACCCGC
* * *
70774779 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
70774825 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
70774875 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
70774918 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
70774955 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:70777642 original size:58 final size:58
Alignment explanation
Indices: 70777526--70777654 Score: 197
Period size: 58 Copynumber: 2.2 Consensus size: 58
70777516 GACGAGATTA
* *
70777526 GCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAGATATG
* *
70777584 GCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAAGGGTATG
1 GCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGC-ATGCTCGAAAGATATG
*
70777642 GCACTATGTGTGC
1 GCACTAAGTGTGC
70777655 GGGCCTAAAT
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
58 64 0.98
59 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (58 bp):
GCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAGATATG
Found at i:70777647 original size:29 final size:29
Alignment explanation
Indices: 70777526--70777625 Score: 200
Period size: 29 Copynumber: 3.4 Consensus size: 29
70777516 GACGAGATTA
70777526 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
70777555 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
70777584 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
70777613 GCACTAAGTGTGC
1 GCACTAAGTGTGC
70777626 GAGCTCGAAG
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 71 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (29 bp):
GCACTAAGTGTGCATGCTGGAAATATATG
Found at i:70782223 original size:46 final size:49
Alignment explanation
Indices: 70782170--70782389 Score: 185
Period size: 46 Copynumber: 4.6 Consensus size: 49
70782160 TGTGTGAGGT
* *
70782170 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCCGGACAT-A-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAC-GAGATGAGAGCC
* * * *
70782216 AGTGTAAGA-CATGTTTGGGACAT-GCATC-GACTACGAGAT-A-TGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTACGAGATGAGAGCC
* * * *
70782260 AGTGTAAGATCATGTTTGGGACATGGCATCGG-C-ACGGATATGCAAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAC-GAGATG--AGAGCC
* ** *
70782310 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCT-CGATGATGATCGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTACGA-GATGAGAGCC
70782359 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
70782390 ACACCTCACC
Statistics
Matches: 144, Mismatches: 19, Indels: 19
0.79 0.10 0.10
Matches are distributed among these distances:
44 16 0.11
45 20 0.14
46 37 0.26
47 1 0.01
49 33 0.23
50 32 0.22
51 5 0.03
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTACGAGATGAGAGCC
Found at i:70782373 original size:99 final size:94
Alignment explanation
Indices: 70782170--70782389 Score: 256
Period size: 99 Copynumber: 2.3 Consensus size: 94
70782160 TGTGTGAGGT
* * *
70782170 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCCGGACAT---A-AGCCAGTGTAAGACATG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-C-ACGGATATGCAAGAGCTAGTGTAAGACATG
*
70782229 TTTGGGACATGCATCGACTACGAGATATGTC
64 TCTGGGACATGCATCGACTACGAGATATGTC
* *
70782260 AGTGTAAGATCATGTTTGGGACATGGCATCGGCACGGATATGCAAGAGCTAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGCAAGAGCTAGTGTAAGA-CATGT
*
70782325 CTGGGACATGGCATCAGCCT-CGATGATGATCGTC
65 CTGGGACAT-GCATC-GACTACGA-GAT-AT-GTC
70782359 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
70782390 ACACCTCACC
Statistics
Matches: 110, Mismatches: 8, Indels: 15
0.83 0.06 0.11
Matches are distributed among these distances:
90 15 0.14
91 14 0.13
92 7 0.06
93 1 0.01
94 12 0.11
95 13 0.12
96 8 0.07
97 6 0.05
98 2 0.02
99 32 0.29
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGCAAGAGCTAGTGTAAGACATGTC
TGGGACATGCATCGACTACGAGATATGTC
Found at i:70783497 original size:20 final size:21
Alignment explanation
Indices: 70783439--70783497 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
70783429 CGAGTGTAGG
* *
70783439 ACACGGGCCTGTTACCCTTCG
1 ACACGGGCGTGTTACCCTTCC
**
70783460 ACTTGGGCGTGTTACCCTTCC
1 ACACGGGCGTGTTACCCTTCC
70783481 ACACGGGCGTG-TACCCT
1 ACACGGGCGTGTTACCCT
70783498 ATTTTAAAGG
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 6 0.19
21 26 0.81
ACGTcount: A:0.14, C:0.36, G:0.25, T:0.25
Consensus pattern (21 bp):
ACACGGGCGTGTTACCCTTCC
Found at i:70786244 original size:50 final size:49
Alignment explanation
Indices: 70786106--70786305 Score: 199
Period size: 50 Copynumber: 4.0 Consensus size: 49
70786096 AATGATCTAT
* * * *
70786106 TGTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAA
1 TGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGA
* **
70786158 CTGTGA--TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA
1 -TGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
70786206 TGGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
1 T-GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
* ** * * * *
70786256 CTGT-TGGTTGCATGCGTAGCACTAAGTGCAGGCTACTATGCGTACCAGA
1 -TGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
70786305 T
1 T
70786306 AGCTTCGGCT
Statistics
Matches: 126, Mismatches: 17, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
47 1 0.01
48 7 0.06
49 38 0.30
50 41 0.33
51 34 0.27
53 5 0.04
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (49 bp):
TGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
Found at i:70791848 original size:21 final size:21
Alignment explanation
Indices: 70791823--70791864 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
70791813 AATAGTGGGA
70791823 TTTTGGAGTTGCTATATGAGT
1 TTTTGGAGTTGCTATATGAGT
70791844 TTTTGGAGTTGCTATATGAGT
1 TTTTGGAGTTGCTATATGAGT
70791865 AAAAAGAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.05, G:0.29, T:0.48
Consensus pattern (21 bp):
TTTTGGAGTTGCTATATGAGT
Found at i:70792377 original size:46 final size:43
Alignment explanation
Indices: 70792318--70792537 Score: 176
Period size: 46 Copynumber: 4.8 Consensus size: 43
70792308 GTCATTTGTG
*
70792318 TGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 TGAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-C-C-TTA-GA
* * *
70792365 -GAGCCAGTGTAAGACCATGTCTGGGACACGGCAT-TGCATTGAGA
1 TGAGCCAGTGTAAGA-CATGTCTGGGACA-TGCATCGGCCTT-AGA
* *
70792409 CGATGACCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGGGACA
1 TGA-G-CCAGTGTAAGACATGTCTGGGACATGCATCGGCCTT---AGA
* * *
70792457 TAAGCCAATGTAAGACATGTCTGGGACATGCATCGG-CTACGAGA
1 TGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT--TAGA
* *
70792501 TGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 TGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
70792538 ACACCTTACC
Statistics
Matches: 143, Mismatches: 17, Indels: 27
0.76 0.09 0.14
Matches are distributed among these distances:
44 17 0.12
45 23 0.16
46 69 0.48
47 26 0.18
48 8 0.06
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (43 bp):
TGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTAGA
Found at i:70793633 original size:21 final size:21
Alignment explanation
Indices: 70793600--70793653 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
70793590 CAGGTGTGGG
*
70793600 ACATGGGCTTGTTACCCTTCC
1 ACATGGGCGTGTTACCCTTCC
*
70793621 ACATAGGCGTGTTACCCTTCC
1 ACATGGGCGTGTTACCCTTCC
*
70793642 ACACGGGCGTGT
1 ACATGGGCGTGT
70793654 GCCCTGTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.17, C:0.31, G:0.24, T:0.28
Consensus pattern (21 bp):
ACATGGGCGTGTTACCCTTCC
Found at i:70795293 original size:40 final size:40
Alignment explanation
Indices: 70795256--70795439 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
70795246 GCTACTCGTT
*
70795256 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
70795296 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
70795336 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
70795375 CAAATGCCTTC-GGATCTTAGTCCAGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
70795416 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
70795440 ACATCATTCG
Statistics
Matches: 123, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 76 0.62
41 14 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:70795367 original size:79 final size:81
Alignment explanation
Indices: 70795258--70795440 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
70795248 TACTCGTTCA
* * *
70795258 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCAG
* *
70795321 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
70795338 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCAGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCAGA
*
70795401 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
70795417 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
70795441 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCAGA
TATAGTAACTTAGCAC
Found at i:70802252 original size:14 final size:14
Alignment explanation
Indices: 70802220--70802254 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
70802210 TATTTAGATT
*
70802220 CAAATTTGGATATT
1 CAAATTTGGATATA
*
70802234 GAAATTTGGATATA
1 CAAATTTGGATATA
70802248 CAAATTT
1 CAAATTT
70802255 ATTATTCGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.40, C:0.06, G:0.14, T:0.40
Consensus pattern (14 bp):
CAAATTTGGATATA
Found at i:70817740 original size:14 final size:14
Alignment explanation
Indices: 70817723--70817765 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
70817713 TAATATTATG
70817723 ATATTTCAATAATA
1 ATATTTCAATAATA
***
70817737 ATATAAAAATAATA
1 ATATTTCAATAATA
70817751 ATATTTCAATTAATA
1 ATATTTCAA-TAATA
70817766 TTAATTATTT
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (14 bp):
ATATTTCAATAATA
Found at i:70818107 original size:23 final size:23
Alignment explanation
Indices: 70818053--70818122 Score: 79
Period size: 23 Copynumber: 3.0 Consensus size: 23
70818043 TTTTTCTTTT
*
70818053 TTATAGAGAATCTTCACTATTT-A
1 TTATAGAGAATCTTCA-TTTTTCA
70818076 TTATAGAGAATCTTCATTTTTCA
1 TTATAGAGAATCTTCATTTTTCA
* * * *
70818099 TTGTTGAGAATATTCATTGTTCA
1 TTATAGAGAATCTTCATTTTTCA
70818122 T
1 T
70818123 CTTTGTTTTC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
22 4 0.10
23 37 0.90
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.47
Consensus pattern (23 bp):
TTATAGAGAATCTTCATTTTTCA
Found at i:70826754 original size:27 final size:26
Alignment explanation
Indices: 70826716--70826802 Score: 113
Period size: 27 Copynumber: 3.3 Consensus size: 26
70826706 AGAGGAAGTA
70826716 TTCTGGTGGCTCTGCCACAAATATCTG
1 TTCTGGTGGCTCTGCCAC-AATATCTG
70826743 TTCTGGTGGCTCTGCCACAATATCTG
1 TTCTGGTGGCTCTGCCACAATATCTG
* *
70826769 TATCTGGTGACGT-TGTCACAATATCTG
1 T-TCTGGTGGC-TCTGCCACAATATCTG
*
70826796 TTTTGGT
1 TTCTGGT
70826803 AGCCATGCTG
Statistics
Matches: 55, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
26 14 0.25
27 40 0.73
28 1 0.02
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (26 bp):
TTCTGGTGGCTCTGCCACAATATCTG
Found at i:70830129 original size:39 final size:39
Alignment explanation
Indices: 70830075--70830189 Score: 167
Period size: 39 Copynumber: 2.9 Consensus size: 39
70830065 GAATGTTCGG
* *
70830075 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGTGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
*
70830114 GTGATATCCGGGCTAAGCTCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
* * *
70830153 GTGATATCCGGGTTAAGTCCCGAAGGCATTTATGCGA
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGA
70830190 GCTACTATAA
Statistics
Matches: 68, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
39 52 0.76
40 16 0.24
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.26
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
Found at i:70842297 original size:35 final size:35
Alignment explanation
Indices: 70842252--70842344 Score: 87
Period size: 45 Copynumber: 2.4 Consensus size: 35
70842242 GCTTTTGGCA
*
70842252 AAAAAAGAGGAAAGGATAAAAAAGGAGAGCGGTTG
1 AAAAAGGAGGAAAGGATAAAAAAGGAGAGCGGTTG
70842287 AAAAAGGAGGAAACAACTACAAAGGATAAAAAAGGAGAGCGGTTG
1 AAAAAGGAGG----------AAAGGATAAAAAAGGAGAGCGGTTG
70842332 AAAAAGGAGGAAA
1 AAAAAGGAGGAAA
70842345 CAACTACATC
Statistics
Matches: 47, Mismatches: 1, Indels: 20
0.69 0.01 0.29
Matches are distributed among these distances:
35 12 0.26
45 35 0.74
ACGTcount: A:0.56, C:0.05, G:0.31, T:0.08
Consensus pattern (35 bp):
AAAAAGGAGGAAAGGATAAAAAAGGAGAGCGGTTG
Found at i:70842315 original size:45 final size:45
Alignment explanation
Indices: 70842262--70842352 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
70842252 AAAAAAGAGG
70842262 AAAGGATAAAAAAGGAGAGCGGTTGAAAAAGGAGGAAACAACTAC
1 AAAGGATAAAAAAGGAGAGCGGTTGAAAAAGGAGGAAACAACTAC
70842307 AAAGGATAAAAAAGGAGAGCGGTTGAAAAAGGAGGAAACAACTAC
1 AAAGGATAAAAAAGGAGAGCGGTTGAAAAAGGAGGAAACAACTAC
70842352 A
1 A
70842353 TCATCTTTGG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.54, C:0.09, G:0.29, T:0.09
Consensus pattern (45 bp):
AAAGGATAAAAAAGGAGAGCGGTTGAAAAAGGAGGAAACAACTAC
Found at i:70853442 original size:40 final size:40
Alignment explanation
Indices: 70853270--70853445 Score: 207
Period size: 40 Copynumber: 4.4 Consensus size: 40
70853260 GAATGATGTT
* * *
70853270 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATC
*
70853310 CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
70853350 CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATC
* *
70853390 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA-C
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATC
* *
70853430 TGGGCTATGTCCCGAA
1 CGGGCTAAGTCCCGAA
70853446 AGTATTTGAA
Statistics
Matches: 122, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
39 1 0.01
40 111 0.91
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:70853460 original size:80 final size:79
Alignment explanation
Indices: 70853321--70853476 Score: 174
Period size: 80 Copynumber: 2.0 Consensus size: 79
70853311 GGACTAAGAT
* * **
70853321 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAAGCATTTGAACGAG-TAGCT
70853385 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
* * * *
70853401 CCGAAGGCATTTGTGCGAGCTACTATAA-CTGGGCTATG-TCCCGAAAGTATTTGAACGAGTAGC
1 CCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAAGCATTTGAACGAGTAGC
*
70853464 TATATCCGGTTAA
64 TAAATCCGGTTAA
70853477 ACTCCGAAGG
Statistics
Matches: 64, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
79 9 0.14
80 53 0.83
81 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAAGCATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:70860972 original size:40 final size:40
Alignment explanation
Indices: 70860887--70861039 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
70860877 GGATATAGCG
* * * * ***
70860887 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* * * *
70860927 GCTCGCACAAATGCATTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* **
70860967 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGA
*
70861007 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
70861040 CATCATTCGA
Statistics
Matches: 90, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
39 3 0.03
40 76 0.84
41 11 0.12
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
Found at i:70861755 original size:2 final size:2
Alignment explanation
Indices: 70861748--70861779 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
70861738 ATGTGCAAAC
70861748 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
70861780 GCTAGAGCCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:70864610 original size:40 final size:40
Alignment explanation
Indices: 70864553--70864738 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
70864543 TCGAATGATG
* * * *
70864553 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
70864593 TCCGGACTAAGAT-CCGAAGGCATTTGTCCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
70864633 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** *
70864673 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
70864714 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
70864739 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70864745 original size:80 final size:79
Alignment explanation
Indices: 70864606--70864761 Score: 183
Period size: 80 Copynumber: 2.0 Consensus size: 79
70864596 GGACTAAGAT
* **
70864606 CCGAAGGCATTTGTCCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTCCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
70864670 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
* * * *
70864686 CCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACGAGTAGC
1 CCGAAGGCATTTGTCCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGC
*
70864749 TATATCCGGTTAA
64 TAAATCCGGTTAA
70864762 ACTCTGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
79 9 0.14
80 54 0.83
81 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTCCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:70873448 original size:136 final size:137
Alignment explanation
Indices: 70873204--70873475 Score: 447
Period size: 136 Copynumber: 2.0 Consensus size: 137
70873194 GATTTAATTG
* * *
70873204 AAAAGGTTCCTAAATATGCCAAATATTTAAAAGAAATCATGTTCAGGCAAAGGAAAATAAAAACA
1 AAAAGGTTCCTAAACATGCCAAATATTTAAAAGAAATCATGTCCAGGAAAAGGAAAATAAAAACA
* *
70873269 AGAGAGCAAGTTAACTTAAGTGCCTCATATAATGCGATTATATCTAAACAGATGC-CCCAAAACT
66 AGAGAGAAAGTTAACGTAAGTGCCTCATATAATGCGATTATATCTAAACAGATGCTCCCAAAACT
70873333 AAAAAAA
131 AAAAAAA
* *
70873340 AAAAGGTTCCTAAACATGCCAAATATTTAAAAGAAATCATGTCCAGGAAAATGAAAATAAAAATA
1 AAAAGGTTCCTAAACATGCCAAATATTTAAAAGAAATCATGTCCAGGAAAAGGAAAATAAAAACA
* * *
70873405 AGAGAGAAAGTTAACGTAAGTGCCTCATGTAGTGCGATTATATCTAAACAGATGCTCTCAAAACT
66 AGAGAGAAAGTTAACGTAAGTGCCTCATATAATGCGATTATATCTAAACAGATGCTCCCAAAACT
70873470 AAAAAA
131 AAAAAA
70873476 CCCAAGGAGT
Statistics
Matches: 125, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
136 111 0.89
137 14 0.11
ACGTcount: A:0.48, C:0.15, G:0.15, T:0.22
Consensus pattern (137 bp):
AAAAGGTTCCTAAACATGCCAAATATTTAAAAGAAATCATGTCCAGGAAAAGGAAAATAAAAACA
AGAGAGAAAGTTAACGTAAGTGCCTCATATAATGCGATTATATCTAAACAGATGCTCCCAAAACT
AAAAAAA
Found at i:70875442 original size:2 final size:2
Alignment explanation
Indices: 70875435--70875460 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
70875425 CAAGTATGTG
70875435 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
70875461 GAGTATGTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:70875737 original size:50 final size:50
Alignment explanation
Indices: 70875655--70875786 Score: 149
Period size: 50 Copynumber: 2.6 Consensus size: 50
70875645 CGTATGTGGC
* * *
70875655 AGTATATCTGCATATCAGTGATAGC-TAGTCCACAAAGTGTTATAAATGGT
1 AGTATATCTGCATATTAGTGGTGGCTTA-TCCACAAAGTGTTATAAATGGT
* * *
70875705 AGTATATTTGCATATTAGTGGTGGCTTATCCACAAAGTGTTATTAGTGGT
1 AGTATATCTGCATATTAGTGGTGGCTTATCCACAAAGTGTTATAAATGGT
* * * * *
70875755 AGTTTATCTACAAATTATTGGTGGCTTGTCCA
1 AGTATATCTGCATATTAGTGGTGGCTTATCCA
70875787 TAAATGGTGA
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
50 67 0.97
51 2 0.03
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.37
Consensus pattern (50 bp):
AGTATATCTGCATATTAGTGGTGGCTTATCCACAAAGTGTTATAAATGGT
Found at i:70875772 original size:25 final size:26
Alignment explanation
Indices: 70875717--70875778 Score: 63
Period size: 28 Copynumber: 2.3 Consensus size: 26
70875707 TATATTTGCA
*
70875717 TATTAGTGGTGGCTTATCCACAAAGTGT
1 TATTAGTGGTAGCTTATCCACAAA--GT
* *
70875745 TATTAGTGGTAGTTTATCTACAAA-T
1 TATTAGTGGTAGCTTATCCACAAAGT
*
70875770 TATTGGTGG
1 TATTAGTGG
70875779 CTTGTCCATA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 9 0.30
28 21 0.70
ACGTcount: A:0.26, C:0.10, G:0.24, T:0.40
Consensus pattern (26 bp):
TATTAGTGGTAGCTTATCCACAAAGT
Found at i:70876734 original size:23 final size:23
Alignment explanation
Indices: 70876704--70876750 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
70876694 TAGCTTTGAA
*
70876704 ACTATAGACTGTGAAAACTATAG
1 ACTATAGACTCTGAAAACTATAG
*
70876727 ACTATAGATTCTGAAAACTATAG
1 ACTATAGACTCTGAAAACTATAG
70876750 A
1 A
70876751 ATTTGAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.45, C:0.13, G:0.15, T:0.28
Consensus pattern (23 bp):
ACTATAGACTCTGAAAACTATAG
Found at i:70876746 original size:16 final size:16
Alignment explanation
Indices: 70876727--70876759 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
70876717 AAAACTATAG
70876727 ACTATAG-ATTCTGAAA
1 ACTATAGAATT-TGAAA
70876743 ACTATAGAATTTGAAA
1 ACTATAGAATTTGAAA
70876759 A
1 A
70876760 ATCTAGACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.48, C:0.09, G:0.12, T:0.30
Consensus pattern (16 bp):
ACTATAGAATTTGAAA
Found at i:70878512 original size:37 final size:37
Alignment explanation
Indices: 70878453--70878524 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
70878443 AGCTCAGACG
*
70878453 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
* *
70878490 AAATCTCTACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGA
70878525 ATATATTTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
Found at i:70878728 original size:48 final size:48
Alignment explanation
Indices: 70878671--70878999 Score: 518
Period size: 48 Copynumber: 6.8 Consensus size: 48
70878661 GCACATCGCC
70878671 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
70878719 TATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
70878767 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
70878815 TATATATTTCACA-TTGACCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
70878863 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * * *
70878913 TATATATTTCACA-TTGACCATTCGGCTTTACCACATATGCATATCTTA
1 TACATATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
70878961 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA
70879000 TGCATGTTCA
Statistics
Matches: 258, Mismatches: 17, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
47 2 0.01
48 210 0.81
49 6 0.02
50 40 0.16
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:70878779 original size:96 final size:96
Alignment explanation
Indices: 70878671--70878999 Score: 570
Period size: 96 Copynumber: 3.4 Consensus size: 96
70878661 GCACATCGCC
* *
70878671 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACACT-A
1 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCATATATATTTCACATTGA
70878735 GCCATTCGGCTTTACCACATATACATATCTCA
66 -CCATTCGGCTTTACCACATATACATATCTCA
70878767 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCATATATATTTCACATTGA
1 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCATATATATTTCACATTGA
70878832 CCATTCGGCTTTACCACATATACATATCTCA
66 CCATTCGGCTTTACCACATATACATATCTCA
70878863 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTC--ATATATATTTCACATT
* *
70878928 GACCATTCGGCTTTACCACATATGCATATCTTA
64 GACCATTCGGCTTTACCACATATACATATCTCA
* *
70878961 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACACTAGCCATTCGACTTTACCACATATA
70879000 TGCATGTTCA
Statistics
Matches: 224, Mismatches: 6, Indels: 4
0.96 0.03 0.02
Matches are distributed among these distances:
96 139 0.62
97 1 0.00
98 84 0.38
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.36
Consensus pattern (96 bp):
TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCATATATATTTCACATTGA
CCATTCGGCTTTACCACATATACATATCTCA
Found at i:70879048 original size:47 final size:47
Alignment explanation
Indices: 70878969--70879209 Score: 392
Period size: 47 Copynumber: 5.1 Consensus size: 47
70878959 TATACATATT
* * *
70878969 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
70879016 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
70879063 TCACATTGGCTATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
70879110 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
70879157 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
70879204 TCACAT
1 TCACAT
70879210 AAAATCCTAA
Statistics
Matches: 181, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 181 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:70879089 original size:22 final size:22
Alignment explanation
Indices: 70879062--70879137 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
70879052 GCTCACATTC
70879062 ATCACATTGGCTATTCGGCCTT
1 ATCACATTGGCTATTCGGCCTT
* * * *
70879084 ATCACATATATGCATGTTC-ACATT
1 ATCACAT-T-GGC-TATTCGGCCTT
*
70879108 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCTATTCGGCCTT
70879131 ATCACAT
1 ATCACAT
70879138 ATATGCATGT
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 17 0.43
23 6 0.15
24 6 0.15
25 11 0.28
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCTATTCGGCCTT
Found at i:70883135 original size:40 final size:40
Alignment explanation
Indices: 70883103--70883443 Score: 556
Period size: 40 Copynumber: 8.5 Consensus size: 40
70883093 CCAGCATGAT
* * * *
70883103 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
70883143 TGCTCTTCAGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
70883183 TGCTCTTCGGGACTTAGCCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
70883223 TGCTCTTCGGGACTTAGCCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
70883263 TGCTCTTCGGGACTTAGCCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
70883303 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
70883343 TGCTCTTCGGGACTTAGCCCGAATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
70883383 TGCTCTTCGGCACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
70883423 TGCTCTTCGAGACTTAGCCCG
1 TGCTCTTCGGGACTTAGCCCG
70883444 AGTATATCAC
Statistics
Matches: 282, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 282 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:70883400 original size:23 final size:23
Alignment explanation
Indices: 70883334--70883400 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
70883324 GATACATCAC
*
70883334 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGCACT
* * *
70883357 TAGCCCGAAT-AT-AT---CAC-
1 TAGCACGAATGCTCTTCGGCACT
70883374 TAGCACGAATGCTCTTCGGCACT
1 TAGCACGAATGCTCTTCGGCACT
70883397 TAGC
1 TAGC
70883401 CCGGATACAT
Statistics
Matches: 31, Mismatches: 7, Indels: 12
0.62 0.14 0.24
Matches are distributed among these distances:
17 9 0.29
18 3 0.10
19 1 0.03
21 1 0.03
22 4 0.13
23 13 0.42
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (23 bp):
TAGCACGAATGCTCTTCGGCACT
Found at i:70884783 original size:37 final size:37
Alignment explanation
Indices: 70884724--70884795 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
70884714 AGCTCAGACG
*
70884724 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
* *
70884761 AAATCTCCAGACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGA
70884796 ATATATTTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
Found at i:70884996 original size:48 final size:48
Alignment explanation
Indices: 70884942--70885270 Score: 545
Period size: 48 Copynumber: 6.8 Consensus size: 48
70884932 GCACATCGCC
*
70884942 TACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
70884990 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
70885038 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
70885086 TATATATTTCACA-TTGACCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCA
70885134 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
70885184 TATATATTTCACA-TTGACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
70885232 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA
70885271 TGCATGTTCA
Statistics
Matches: 264, Mismatches: 11, Indels: 12
0.92 0.04 0.04
Matches are distributed among these distances:
47 2 0.01
48 214 0.81
49 6 0.02
50 42 0.16
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:70885319 original size:47 final size:47
Alignment explanation
Indices: 70885240--70885480 Score: 374
Period size: 47 Copynumber: 5.1 Consensus size: 47
70885230 CATACATATT
* * * *
70885240 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
70885287 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
70885334 TCACATTGGCTATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
70885381 TCAAATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
70885428 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
70885475 TCACAT
1 TCACAT
70885481 AAAATCCTAA
Statistics
Matches: 178, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 178 1.00
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:70885367 original size:94 final size:94
Alignment explanation
Indices: 70885192--70885480 Score: 377
Period size: 94 Copynumber: 3.1 Consensus size: 94
70885182 TATATATATT
* * * * *
70885192 TCACATTGACCATTCGGCTTTA-C-CACATATGCATATCTCATACATAT-TTCACATTAGCCATT
1 TCACATTGGCCATTCGGCCTTATCACACATATGCAT-GCTC--ACAT-TCATCACATTGGCCATT
* * *
70885254 CGGCTTTACCACATATATGCATGTTCATATTCA
62 CGGCCTTATCACATATATGCATGTTCACATTCA
*
70885287 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCTATTCGGC
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGC
70885352 CTTATCACATATATGCATGTTCACATTCA
66 CTTATCACATATATGCATGTTCACATTCA
* * *
70885381 TCAAATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGC
* * **
70885446 CTTATCTCATATATACACATTCACATTCA
66 CTTATCACATATATGCATGTTCACATTCA
70885475 TCACAT
1 TCACAT
70885481 AAAATCCTAA
Statistics
Matches: 173, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
93 1 0.01
94 137 0.79
95 20 0.12
96 4 0.02
97 11 0.06
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (94 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGC
CTTATCACATATATGCATGTTCACATTCA
Found at i:70890535 original size:50 final size:49
Alignment explanation
Indices: 70890466--70890694 Score: 219
Period size: 50 Copynumber: 4.6 Consensus size: 49
70890456 TATTAGAACA
* *
70890466 CATGTGTAGTACTATGTGTAGGCTACTACGTGTACCATATTGTTAGATT
1 CATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGTTAGATT
* ** * * *
70890515 GCATGTGTAGTACTAAGTGTAGGCTACTATGCATACCCGATAGCTTCGA-T
1 -CATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTG-TTAGATT
* * * * *
70890565 CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAG-GT
1 CA--TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGTTAGATT
* *
70890615 CATGTGTGTAGTACTAAGTGTCGGCTACTACGTGTACCAGATTGTTAGGTCT
1 CA--TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGTTAGAT-T
* * *
70890667 CATGAGTAGTACTAAGTGCAAGCTACTA
1 CATGTGTAGTACTAAGTGTAGGCTACTA
70890695 TGCATACTAG
Statistics
Matches: 145, Mismatches: 28, Indels: 12
0.78 0.15 0.06
Matches are distributed among these distances:
49 2 0.01
50 104 0.72
51 36 0.25
52 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGTTAGATT
Found at i:70892445 original size:73 final size:73
Alignment explanation
Indices: 70892323--70892469 Score: 249
Period size: 73 Copynumber: 2.0 Consensus size: 73
70892313 ATAATTGAGG
* *
70892323 ATGTTGAATGCTTCTGGATCCATGTTTTTGTGTGTGCATGTAAAAGGTGACAAAAAGGCTTAAAA
1 ATGTTGAATGCTTCTGGATCCATGTTTGTATGTGTGCATGTAAAAGGTGACAAAAAGGCTTAAAA
70892388 AATAGCCT
66 AATAGCCT
* **
70892396 ATGTTGAATGCTTCTGGATCCATGTTTGTATGTGTGCATGTAAAGGGTGACAAAAAGGCTTGGAA
1 ATGTTGAATGCTTCTGGATCCATGTTTGTATGTGTGCATGTAAAAGGTGACAAAAAGGCTTAAAA
70892461 AATAGCCT
66 AATAGCCT
70892469 A
1 A
70892470 CGTGCTGGCC
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
73 69 1.00
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (73 bp):
ATGTTGAATGCTTCTGGATCCATGTTTGTATGTGTGCATGTAAAAGGTGACAAAAAGGCTTAAAA
AATAGCCT
Found at i:70896591 original size:4 final size:4
Alignment explanation
Indices: 70896582--70896610 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
70896572 TAGGGATGAC
70896582 TATT TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT T
70896611 TTGTGCTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:70898554 original size:79 final size:80
Alignment explanation
Indices: 70898415--70898612 Score: 210
Period size: 79 Copynumber: 2.5 Consensus size: 80
70898405 AATGTTCGGA
* *
70898415 TGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAAATCCGGGCTAAGCCCGAAGG
1 TGATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGA-TAAATCCGGGCTAAGCCCGAAGG
* *
70898479 CAATT-GTGCGAGTT-G
65 C-ATTCATGCGAGTTAC
* * * *
70898494 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTG-TGATATGCGGGTTAAGTCCCGAAG
1 TGATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGAT-AAATCCGGGCTAAG-CCCGAAG
*
70898557 GCATTCATGTGAGTTAC
64 GCATTCATGCGAGTTAC
* *
70898574 T-ATAATCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTT
1 TGAT-ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT
70898613 ACTATAACCG
Statistics
Matches: 100, Mismatches: 12, Indels: 12
0.81 0.10 0.10
Matches are distributed among these distances:
77 1 0.01
78 32 0.32
79 35 0.35
80 12 0.12
81 20 0.20
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.26
Consensus pattern (80 bp):
TGATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGATAAATCCGGGCTAAGCCCGAAGGC
ATTCATGCGAGTTAC
Done.