Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 250 of 444
Found at i:71173091 original size:46 final size:46
Alignment explanation
Indices: 71173024--71173196 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
71173014 TGTAACCCGC
*
71173024 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
71173070 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
71173120 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAC--TCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
71173161 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
71173197 ATGCCAACCA
Statistics
Matches: 110, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
40 1 0.01
41 3 0.03
42 1 0.01
43 2 0.02
44 29 0.26
46 35 0.32
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:71173189 original size:91 final size:92
Alignment explanation
Indices: 71173032--71173201 Score: 306
Period size: 91 Copynumber: 1.8 Consensus size: 92
71173022 GCCCATAAGT
*
71173032 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACG-TCGCATCCATAAGTGAACTCGGACTCAACTCAA
71173097 CGAGTTCGGATGCCTAGTTACATCTCAC
65 CGAGTTCGGATGCCTAGTTACATCTCAC
*
71173125 GAACTCGGACTCAACTCAACGAGTTCGGAC-TCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACGTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
71173189 GAGTTCGGATGCC
66 GAGTTCGGATGCC
71173202 AACCATCCTA
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
91 47 0.63
93 28 0.37
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:71175866 original size:58 final size:58
Alignment explanation
Indices: 71175750--71175878 Score: 197
Period size: 58 Copynumber: 2.2 Consensus size: 58
71175740 GACGAGATTA
* *
71175750 GCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAGATATG
* *
71175808 GCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAAGGGTATG
1 GCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGC-ATGCTCGAAAGATATG
*
71175866 GCACTATGTGTGC
1 GCACTAAGTGTGC
71175879 GGGCCTAAAT
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
58 64 0.98
59 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (58 bp):
GCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAGATATG
Found at i:71175871 original size:29 final size:29
Alignment explanation
Indices: 71175750--71175849 Score: 200
Period size: 29 Copynumber: 3.4 Consensus size: 29
71175740 GACGAGATTA
71175750 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
71175779 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
71175808 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
71175837 GCACTAAGTGTGC
1 GCACTAAGTGTGC
71175850 GAGCTCGAAG
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 71 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (29 bp):
GCACTAAGTGTGCATGCTGGAAATATATG
Found at i:71177432 original size:28 final size:28
Alignment explanation
Indices: 71177371--71177468 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
71177361 TCACAAATTG
** * *
71177371 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
71177400 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
71177428 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
71177456 GCACTAAGTGTGC
1 GCACTAAGTGTGC
71177469 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:71185105 original size:28 final size:28
Alignment explanation
Indices: 71185044--71185141 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
71185034 TCACAAATTG
** * *
71185044 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
71185073 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
71185101 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
71185129 GCACTAAGTGTGC
1 GCACTAAGTGTGC
71185142 GGGCTTCTTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:71187321 original size:27 final size:26
Alignment explanation
Indices: 71187273--71187332 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
71187263 GCGAGGCTGC
*
71187273 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
71187300 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
71187326 CAGATAT
1 CAGATAT
71187333 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:71187345 original size:33 final size:32
Alignment explanation
Indices: 71187294--71187357 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
71187284 ACGAAGTCAC
* *
71187294 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
* *
71187326 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAGA
71187358 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:71187421 original size:27 final size:26
Alignment explanation
Indices: 71187374--71187424 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
71187364 CGAGGCTGCC
*
71187374 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
71187400 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
71187425 TTGCAACGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:71189977 original size:18 final size:18
Alignment explanation
Indices: 71189954--71189989 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
71189944 TAAAAGAGAT
71189954 GGGCTAAAAGTGCAAATA
1 GGGCTAAAAGTGCAAATA
71189972 GGGCTAAAAGTGCAAATA
1 GGGCTAAAAGTGCAAATA
71189990 AACCTAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.11, G:0.28, T:0.17
Consensus pattern (18 bp):
GGGCTAAAAGTGCAAATA
Found at i:71189996 original size:18 final size:18
Alignment explanation
Indices: 71189957--71189996 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
71189947 AAGAGATGGG
***
71189957 CTAAAAGTGCAAATAGGG
1 CTAAAAGTGCAAATAAAC
71189975 CTAAAAGTGCAAATAAAC
1 CTAAAAGTGCAAATAAAC
71189993 CTAA
1 CTAA
71189997 GATACAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.17
Consensus pattern (18 bp):
CTAAAAGTGCAAATAAAC
Found at i:71192522 original size:96 final size:96
Alignment explanation
Indices: 71192410--71192672 Score: 400
Period size: 96 Copynumber: 2.7 Consensus size: 96
71192400 CAATGTTGAT
* * * ** * *
71192410 GCCATGTTCCAAACATGGTCTTACACTGGCTCACATATTGAGGCCGATGCCATATCCCAGACATG
1 GCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACGCCGATGCCATGTCCCAGACATG
71192475 GTCTTACACTGGCTCTCATAATGTGGCCGAG
66 GTCTTACACTGGCTCTCATAATGTGGCCGAG
* *
71192506 GCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGTCGATGCCATGTCCCAGACATG
1 GCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACGCCGATGCCATGTCCCAGACATG
* *
71192571 GTCTTACGCTGGCTCTCATAATGTGGCCGAT
66 GTCTTACACTGGCTCTCATAATGTGGCCGAG
* * *
71192602 GCCATGTCCCAAACATGGTCTTACAATAGCACACATATCAACACCGGTGCCATGTCCCAGACATG
1 GCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACGCCGATGCCATGTCCCAGACATG
71192667 GTCTTA
66 GTCTTA
71192673 TGCTAGCACA
Statistics
Matches: 151, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
96 151 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (96 bp):
GCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACGCCGATGCCATGTCCCAGACATG
GTCTTACACTGGCTCTCATAATGTGGCCGAG
Found at i:71192572 original size:144 final size:144
Alignment explanation
Indices: 71192308--71192691 Score: 461
Period size: 144 Copynumber: 2.7 Consensus size: 144
71192298 GGTAAAATGT
* * *
71192308 CGATGCCATGTCCCGGACATGGTCTTACACTAGCTCTCATACATCGGTGCTGATGG-CATGTCCT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA-ATCGG-GCCGA-GGCCATGTCCC
* * * * * *
71192372 AGACATGGTCTTACACTAACACATATAACAATGTTGATGCCATGTTCCAAACATGGTCTTACACT
63 AGACATGGTCTTACACTAGCACACATATCAACGTCGATGCCATGTCCCAAACATGGTCTTACACT
*
71192437 GGCTCACATATTGAGGC
128 GGCTCACATAATGAGGC
* *
71192454 CGATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGAGGCCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATCG-GGCCGAGGCCATGTCCCAG
* *
71192518 ACATGGTCTTACACTAGCACACATATCAACGTCGATGCCATGTCCCAGACATGGTCTTACGCTGG
65 ACATGGTCTTACACTAGCACACATATCAACGTCGATGCCATGTCCCAAACATGGTCTTACACTGG
* *
71192583 CTCTCATAATGTGGC
130 CTCACATAATGAGGC
* * * * ***
71192598 CGATGCCATGTCCCAAACATGGTCTTACAATAGCACACAT-ATCAACACCG-GTGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATC-GGGCCGAG-GCCATGTCCCA
**
71192661 GACATGGTCTTATGCTAGCACACATATCAAC
64 GACATGGTCTTACACTAGCACACATATCAAC
71192692 CAAATGTCTT
Statistics
Matches: 206, Mismatches: 27, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
143 5 0.02
144 160 0.78
145 3 0.01
146 38 0.18
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.26
Consensus pattern (144 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATCGGGCCGAGGCCATGTCCCAGA
CATGGTCTTACACTAGCACACATATCAACGTCGATGCCATGTCCCAAACATGGTCTTACACTGGC
TCACATAATGAGGC
Found at i:71192680 original size:48 final size:48
Alignment explanation
Indices: 71192308--71192691 Score: 324
Period size: 48 Copynumber: 8.0 Consensus size: 48
71192298 GGTAAAATGT
* * * *
71192308 CGATGCCATGTCCCGGACATGGTCTTACACTAGCTCTCATA-CATCGGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAC---GC
* * * * * * * *
71192358 TGATGGCATGTCCTAGACATGGTCTTACACTAACACATATAACAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGC
* * * * * ** *
71192406 TGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATTGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGC
* * * * ***
71192454 CGATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACAT-ATCAACGC
* *
71192502 CGAGGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGC
* * * * ***
71192550 CGATGCCATGTCCCAGACATGGTCTTACGCTGGCTCTCATAAT-GTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACAT-ATCAACGC
* * *
71192598 CGATGCCATGTCCCAAACATGGTCTTACAATAGCACACATATCAACAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGC
* **
71192646 CGGTGCCATGTCCCAGACATGGTCTTATGCTAGCACACATATCAAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAC
71192692 CAAATGTCTT
Statistics
Matches: 266, Mismatches: 63, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
47 4 0.02
48 223 0.84
49 4 0.02
50 33 0.12
51 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGC
Found at i:71194728 original size:27 final size:28
Alignment explanation
Indices: 71194676--71194729 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
71194666 AAGAAATTTA
* *
71194676 AAAAATCCATAAAACACCAAACCATATC
1 AAAAATCCATAAAACACAAAAACATATC
*
71194704 AAAAATCCAT-AATCACAAAAACATAT
1 AAAAATCCATAAAACACAAAAACATAT
71194730 TATACCGATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 13 0.57
28 10 0.43
ACGTcount: A:0.59, C:0.24, G:0.00, T:0.17
Consensus pattern (28 bp):
AAAAATCCATAAAACACAAAAACATATC
Found at i:71201750 original size:52 final size:52
Alignment explanation
Indices: 71201672--71201776 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
71201662 ACAGACTTAG
*
71201672 TACGTCAATGGTGTACCACATAGGTGAATACTATATGTCAAATCAACATAAC
1 TACGTCAATGGTGTACCACATAGGTGAATACTATACGTCAAATCAACATAAC
71201724 TACGTCAATGGTGTACCACATAGGTGAATACTATACGTCAAATCAACATAAC
1 TACGTCAATGGTGTACCACATAGGTGAATACTATACGTCAAATCAACATAAC
71201776 T
1 T
71201777 CAAAAATTTT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (52 bp):
TACGTCAATGGTGTACCACATAGGTGAATACTATACGTCAAATCAACATAAC
Found at i:71202857 original size:38 final size:35
Alignment explanation
Indices: 71202798--71202898 Score: 129
Period size: 31 Copynumber: 2.9 Consensus size: 35
71202788 TCAATCATGC
*
71202798 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
71202837 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
71202868 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
71202899 ACTAGGCCGA
Statistics
Matches: 57, Mismatches: 1, Indels: 12
0.81 0.01 0.17
Matches are distributed among these distances:
31 27 0.47
33 3 0.05
34 1 0.02
36 1 0.02
38 14 0.25
39 11 0.19
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.40
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:71202859 original size:31 final size:31
Alignment explanation
Indices: 71202821--71202915 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
71202811 CCTTTTCATA
*
71202821 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
71202852 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
*
71202883 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
71202914 TT
1 TT
71202916 ACTGTAAACG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:71203158 original size:24 final size:24
Alignment explanation
Indices: 71203107--71203273 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
71203097 GCTTTATCAT
* *
71203107 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
71203132 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
71203156 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
71203179 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
71203203 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
71203227 ATAACTGGGGCATTAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
71203251 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
71203274 TCACTTCCTC
Statistics
Matches: 133, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
23 23 0.17
24 98 0.74
25 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:71203348 original size:20 final size:20
Alignment explanation
Indices: 71203323--71203383 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
71203313 TTATGATTAC
71203323 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
71203343 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
71203363 TTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
71203383 A
1 A
71203384 CCATATTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:71203354 original size:11 final size:11
Alignment explanation
Indices: 71203323--71203378 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
71203313 TTATGATTAC
71203323 ATCATGTGCAT
1 ATCATGTGCAT
*
71203334 ATCA--TACAT
1 ATCATGTGCAT
71203343 ATCATGTGCAT
1 ATCATGTGCAT
*
71203354 ATCA--TACAT
1 ATCATGTGCAT
*
71203363 TTCATGTGCAT
1 ATCATGTGCAT
71203374 ATCAT
1 ATCAT
71203379 ACATACCATA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:71203458 original size:25 final size:25
Alignment explanation
Indices: 71203426--71203473 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
71203416 ATACATAAAC
* * *
71203426 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
71203451 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
71203474 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:71204662 original size:27 final size:27
Alignment explanation
Indices: 71204632--71204696 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
71204622 GGGCATATTC
*
71204632 GTCATTTTACCATACAGGGG-TATCACG
1 GTCACTTTACCATACAGGGGCT-TCACG
* *
71204659 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTCACG
71204686 GTCACTTTACC
1 GTCACTTTACC
71204697 TAATAGGGGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 33 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGCTTCACG
Found at i:71204796 original size:27 final size:27
Alignment explanation
Indices: 71204766--71204836 Score: 99
Period size: 27 Copynumber: 2.6 Consensus size: 27
71204756 AGGGTATTTT
*
71204766 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
71204793 AGTAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
71204820 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
71204837 GGAGTACTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
26 1 0.03
27 36 0.95
28 1 0.03
ACGTcount: A:0.39, C:0.10, G:0.21, T:0.30
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:71207649 original size:31 final size:31
Alignment explanation
Indices: 71207611--71207674 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
71207601 CCTTTTCATA
71207611 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
71207642 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
71207673 TT
1 TT
71207675 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:71207945 original size:47 final size:48
Alignment explanation
Indices: 71207866--71208031 Score: 248
Period size: 47 Copynumber: 3.5 Consensus size: 48
71207856 GCTTTATCAT
* * **
71207866 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTG
71207915 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
*
71207962 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
71208010 ATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
71208032 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
47 60 0.54
48 39 0.35
49 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
Found at i:71207966 original size:71 final size:71
Alignment explanation
Indices: 71207865--71208031 Score: 248
Period size: 71 Copynumber: 2.3 Consensus size: 71
71207855 TGCTTTATCA
*
71207865 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
71207929 AGCCCTTT
64 AGCCCTTT
* * **
71207937 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
71208002 CCCTTT
66 CCCTTT
71208008 TGATAACT-GGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
71208032 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
71 69 0.78
72 19 0.22
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:71208032 original size:24 final size:24
Alignment explanation
Indices: 71207866--71208031 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
71207856 GCTTTATCAT
* *
71207866 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
71207891 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
71207915 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
71207938 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
71207962 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
71207986 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
71208010 ATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
71208032 TCACTTCCTC
Statistics
Matches: 134, Mismatches: 5, Indels: 6
0.92 0.03 0.04
Matches are distributed among these distances:
23 39 0.29
24 83 0.62
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:71208106 original size:20 final size:20
Alignment explanation
Indices: 71208081--71208121 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
71208071 TTATGATTAC
71208081 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
71208101 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
71208121 A
1 A
71208122 CCATATTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:71208196 original size:25 final size:25
Alignment explanation
Indices: 71208164--71208211 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
71208154 ATACATAAAC
* * *
71208164 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
71208189 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
71208212 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:71209425 original size:27 final size:27
Alignment explanation
Indices: 71209368--71209432 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
71209358 GGGCATATTC
*
71209368 GTCATTTTACCATACAGGGGTATCACG
1 GTCACTTTACCATACAGGGGTATCACG
* * *
71209395 GTCACTTTACCCTACAGGGGCT-TTACT
1 GTCACTTTACCATACAGGGG-TATCACG
71209422 GTCACTTTACC
1 GTCACTTTACC
71209433 TAATAGGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGTATCACG
Found at i:71209532 original size:27 final size:27
Alignment explanation
Indices: 71209502--71209572 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
71209492 AGGGTATTTT
*
71209502 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
71209529 AGTAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
71209556 GGTAATTCTGCAAATCG
1 AGTAATTCTGTAAATCG
71209573 GGAGTACTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
26 1 0.03
27 35 0.95
28 1 0.03
ACGTcount: A:0.39, C:0.11, G:0.21, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:71214821 original size:19 final size:18
Alignment explanation
Indices: 71214799--71214850 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 18
71214789 TATTTATTAT
71214799 TATATAATATAACATATAA
1 TATATAATATAACATAT-A
71214818 TATATAATAAGTTAACATATA
1 TATATAAT-A--TAACATATA
71214839 TATATATATATA
1 TATATA-ATATA
71214851 TGTGTAATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
19 10 0.34
20 1 0.03
21 8 0.28
22 10 0.34
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (18 bp):
TATATAATATAACATATA
Found at i:71215421 original size:137 final size:137
Alignment explanation
Indices: 71215102--71215790 Score: 985
Period size: 137 Copynumber: 5.0 Consensus size: 137
71215092 GGGTCGTTAC
*
71215102 AATTAATATATGAATTTGATTCATACAATATATTAATTGTATATATTTTA-CAGAATTTATTAAT
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCA-AATTTATTAAT
* *
71215166 AAAAACAGTTATATTAATTAATTTCGGTCAAAATATAAA-ACATATGGAAATTAATATTATTTTG
65 ATAAATAGTTATATTAATTAATTTCGGTCAAAATATAAAGAC--ATGGAAATTAATATTATTTTG
71215230 GAAAGAATAT
128 GAAAGAATAT
*
71215240 AATTAATATATGAATTTGATTCATACAAAATATTAATTGCATATATTTTACCAAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
* * * * *
71215305 TAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAGCCCTGGAAATTAATAATCTTTTGGAA
66 TAAATAGTTATATTAATTAATTTCGGTCAAAATATAAAGACATGGAAATTAATATTATTTTGGAA
*
71215370 AGAATAA
131 AGAATAT
* * *
71215377 AATTAATATCTTAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAATTTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
* * **
71215442 TAAATAGTTATATTCATTAATTTCGTTCAAAATATAAAAGACATGGAAATTAATATTA-TTTCAA
66 TAAATAGTTATATTAATTAATTTCGGTCAAAATAT-AAAGACATGGAAATTAATATTATTTTGGA
71215506 AAGAATAT
130 AAGAATAT
* * * *
71215514 AATTAAAATATTAATTTGATTCATACAAAATATTAATTGTATATATTTTATCGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
* **
71215579 TAAATAGTTATATTAA-TAGATTTCGATCAAAATATAAAAGACAAAGAAATTAATATTATTTTGG
66 TAAATAGTTATATTAATTA-ATTTCGGTCAAAATAT-AAAGACATGGAAATTAATATTATTTTGG
**
71215643 AAATTATAT
129 AAAGAATAT
* **
71215652 AATTAATATATGAATATGATTCATA-AAAATATTAATTGTATATATTTTAATAAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
* * * *
71215716 TAAATAGCTATATTAATTAATTTCGGTCAAAATAT-AATACATGAAAATTAATATTCTTTTGGAA
66 TAAATAGTTATATTAATTAATTTCGGTCAAAATATAAAGACATGGAAATTAATATTATTTTGGAA
71215780 AGAATAT
131 AGAATAT
71215787 AATT
1 AATT
71215791 TATTTTTCTA
Statistics
Matches: 495, Mismatches: 50, Indels: 15
0.88 0.09 0.03
Matches are distributed among these distances:
135 33 0.07
136 2 0.00
137 308 0.62
138 149 0.30
139 3 0.01
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.41
Consensus pattern (137 bp):
AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
TAAATAGTTATATTAATTAATTTCGGTCAAAATATAAAGACATGGAAATTAATATTATTTTGGAA
AGAATAT
Found at i:71224574 original size:33 final size:33
Alignment explanation
Indices: 71224532--71224597 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
71224522 TATAAGTGTG
*
71224532 TACGTGTTATTATGGACGACAACAGGCTTGGAA
1 TACGTGTTATTATAGACGACAACAGGCTTGGAA
71224565 TACGTGTTATTATAGACGACAACAGGCTTGGAA
1 TACGTGTTATTATAGACGACAACAGGCTTGGAA
71224598 AATAACCTCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (33 bp):
TACGTGTTATTATAGACGACAACAGGCTTGGAA
Found at i:71228107 original size:138 final size:138
Alignment explanation
Indices: 71227551--71228111 Score: 795
Period size: 138 Copynumber: 4.0 Consensus size: 138
71227541 ACGTAGATAA
71227551 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
* * ** * *
71227616 TAAACAGTTATATTAATTAATTTTGGCCAAAATATAAAAGACATGGAAATTAATAATCTTTTGAA
66 TAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATAAAAATTAATATTCTTTTGGA
71227681 AAGAATAT
131 AAGAATAT
* * *
71227689 AATTAATATTTGAATTTGATTCATATAAAATACAAATATTAATTTTATATATTTTACCAAATTTA
1 AATTAATATATGAATTTGATTC--AT---ACA-AAATATTAATTGTATATATTTTACCAAATTTA
* *
71227754 TTAATATAAACAGTTATATTCATTAATTTCGTTC-AAA-ATAAAAGACATAAAAATTAATATTCT
60 TTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATAAAAATTAATATTCT
71227817 TTTGGAAAGAATAT
125 TTTGGAAAGAATAT
* * * *
71227831 AATTAAAATATTAACTTGATTCATACAAAATATTAATTGTATATATTTTTACTAAATTTATTAAT
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATA-TTTTACCAAATTTATTAAT
* * *
71227896 ATAAACAGCTATATTAA-TAGATTTCGGTCAAAATATAAAAGAGATAAAAATTAATATTATTTTG
65 ATAAACAGTTATATTAATTA-ATTTCGGTCAAAATATAAAAGACATAAAAATTAATATTCTTTTG
*
71227960 GAAATAATAT
129 GAAAGAATAT
***
71227970 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTATTGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
* * * *
71228035 TAGACAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTCGA
66 TAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATAAAAATTAATATTCTTTTGGA
71228100 AAGAATAT
131 AAGAATAT
71228108 AATT
1 AATT
71228112 CATTTTTCTA
Statistics
Matches: 375, Mismatches: 37, Indels: 22
0.86 0.09 0.05
Matches are distributed among these distances:
136 19 0.05
137 43 0.11
138 108 0.29
139 81 0.22
140 4 0.01
142 54 0.14
143 5 0.01
144 61 0.16
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.40
Consensus pattern (138 bp):
AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
TAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATAAAAATTAATATTCTTTTGGA
AAGAATAT
Found at i:71228222 original size:74 final size:75
Alignment explanation
Indices: 71228087--71228235 Score: 219
Period size: 74 Copynumber: 2.0 Consensus size: 75
71228077 ATGAAAATTA
* * *
71228087 ATATTCTTTTCGAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTCTTCTCTATTAATAAGG
1 ATATTCTTTTCGAAAGAACATAATTCATTTTTCTAACTTTCCATTTGCCTTCTCTACTAATAAGG
71228152 GAATAATCAT
66 GAATAATCAT
* ** * *
71228162 ATATTCTTTTGGAAA-AACATAATTCATTTTTCTAACTTTTTATTTGCCTTTTCTACTAATAATG
1 ATATTCTTTTCGAAAGAACATAATTCATTTTTCTAACTTTCCATTTGCCTTCTCTACTAATAAGG
71228226 GAATAATCAT
66 GAATAATCAT
71228236 GATTTTTCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
74 52 0.79
75 14 0.21
ACGTcount: A:0.32, C:0.14, G:0.07, T:0.46
Consensus pattern (75 bp):
ATATTCTTTTCGAAAGAACATAATTCATTTTTCTAACTTTCCATTTGCCTTCTCTACTAATAAGG
GAATAATCAT
Found at i:71229314 original size:42 final size:42
Alignment explanation
Indices: 71229226--71229378 Score: 137
Period size: 42 Copynumber: 3.6 Consensus size: 42
71229216 TAACTGACAT
* * * * * * *
71229226 AATATATTTGGCACCTTAGTACATTATCGAAAAG-TCTGAAGT
1 AATATATCTGGCACCTCAGTGCATCATCCAAAAGTTC-AAAGA
* ** * *
71229268 AATATATCTGGCACCTCAATGCATCATCGGAAATTTTAAAGA
1 AATATATCTGGCACCTCAGTGCATCATCCAAAAGTTCAAAGA
* *
71229310 AATATATCTGACACTTCAGTGCATCATCCAAAAGTTCAAAGA
1 AATATATCTGGCACCTCAGTGCATCATCCAAAAGTTCAAAGA
* * *
71229352 AATATATTTGGAACCTCAGTGAATCAT
1 AATATATCTGGCACCTCAGTGCATCAT
71229379 ATCTAACTGG
Statistics
Matches: 88, Mismatches: 22, Indels: 2
0.79 0.20 0.02
Matches are distributed among these distances:
42 87 0.99
43 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (42 bp):
AATATATCTGGCACCTCAGTGCATCATCCAAAAGTTCAAAGA
Found at i:71232519 original size:26 final size:26
Alignment explanation
Indices: 71232490--71232599 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
71232480 TGGTACAAAT
*
71232490 TGATAATAGGTTAGGTAAATGTTCAA
1 TGATAATAGGTTAGGTAAATGTTCCA
71232516 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
71232542 TGATAATGGGTTAGGTAAATGTTCCG
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
71232568 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
71232594 TGATAA
1 TGATAA
71232600 GAATTTCATG
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:71234260 original size:27 final size:27
Alignment explanation
Indices: 71234219--71234333 Score: 158
Period size: 27 Copynumber: 4.2 Consensus size: 27
71234209 GAGGAAGCGT
*
71234219 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
71234246 TCTGGTGGCTCTGCCACAAATATCTAA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
71234273 ACTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
71234300 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
71234328 TCTGGT
1 TCTGGT
71234334 AACTTTGTCA
Statistics
Matches: 76, Mismatches: 11, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
27 70 0.92
28 6 0.08
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.33
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:71234348 original size:27 final size:26
Alignment explanation
Indices: 71234281--71234358 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 26
71234271 AAACTGGTGG
**
71234281 CTCTGCCACATATATCTGTTCTGGTGG
1 CTCTGCCACAT-TATCTGTTCTGGTAA
71234308 CTCTGCCACGATTATCTGTATCTGGTAA
1 CTCTGCCAC-ATTATCTGT-TCTGGTAA
* *
71234336 CTTTGTCACATTATCTGTTCTGG
1 CTCTGCCACATTATCTGTTCTGG
71234359 CAGCCATGCT
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
26 5 0.11
27 25 0.56
28 15 0.33
ACGTcount: A:0.17, C:0.24, G:0.19, T:0.40
Consensus pattern (26 bp):
CTCTGCCACATTATCTGTTCTGGTAA
Found at i:71234351 original size:54 final size:54
Alignment explanation
Indices: 71234230--71234358 Score: 152
Period size: 54 Copynumber: 2.4 Consensus size: 54
71234220 CTGGTGGCTA
* * **
71234230 TGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTAAACTGGTGGCTC
1 TGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTAAACTGGTAACTC
* * * * *
71234284 TGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTAACTT
1 TGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCT-AAACTGGTAACTC
*
71234339 TGTCACAT-TATCTGTTCTGG
1 TGCCACATATATCTGTTCTGG
71234359 CAGCCATGCT
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 49 0.77
55 15 0.23
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (54 bp):
TGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTAAACTGGTAACTC
Found at i:71238889 original size:10 final size:10
Alignment explanation
Indices: 71238847--71238890 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
71238837 TAAAGAACAT
71238847 ATTTTCTATAA
1 ATTTTC-ATAA
71238858 A-TTTCATAA
1 ATTTTCATAA
* *
71238867 TTTTTCATCA
1 ATTTTCATAA
71238877 ATTTTCATAA
1 ATTTTCATAA
71238887 ATTT
1 ATTT
71238891 ACATTTTAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
9 4 0.14
10 23 0.82
11 1 0.04
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.55
Consensus pattern (10 bp):
ATTTTCATAA
Found at i:71242361 original size:2 final size:2
Alignment explanation
Indices: 71242354--71242389 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
71242344 GAGACTAGTC
71242354 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
71242390 CATGTCATGA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71244423 original size:30 final size:30
Alignment explanation
Indices: 71244389--71244449 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
71244379 TCCTTAACTC
71244389 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * * *
71244419 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
71244449 A
1 A
71244450 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:71249473 original size:24 final size:24
Alignment explanation
Indices: 71249441--71249532 Score: 132
Period size: 24 Copynumber: 3.8 Consensus size: 24
71249431 AGGCTGTCAG
*
71249441 GAGAAGATTTAGAAGCTGATAAGA
1 GAGAAGATTTAGGAGCTGATAAGA
* *
71249465 GAGACGATTTAGGAGCTGATAAGG
1 GAGAAGATTTAGGAGCTGATAAGA
*
71249489 GAGAGGATTTAGGAGCTGATAA-A
1 GAGAAGATTTAGGAGCTGATAAGA
71249512 TGAGAAGATTTAGGAGCTGAT
1 -GAGAAGATTTAGGAGCTGAT
71249533 CAAAGAGCAA
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.38, C:0.05, G:0.34, T:0.23
Consensus pattern (24 bp):
GAGAAGATTTAGGAGCTGATAAGA
Found at i:71257017 original size:48 final size:48
Alignment explanation
Indices: 71256680--71257043 Score: 228
Period size: 49 Copynumber: 7.7 Consensus size: 48
71256670 AGGGTACGAT
** * * * *
71256680 GCCGATGCCATGGACCAAACATGGTCTTACACTGGCTCACA-CATCTAA
1 GCCGATGCCATGTCCCAAACA-GGTCTTACACTGGCTCTCATAATCGAG
* * * *
71256728 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG
1 GCCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCATA-ATCGAG
* * * * *
71256777 GCTGATGCCATGTCCCAGACAGGTCTTACTCTGGCTCTTATCTATCG-G
1 GCCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCAT-AATCGAG
* ** * * *
71256825 TGTCGATGCCATGTCCCAAACAGGTCTTACACT--AACACAT-GTC-AA
1 -GCCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCATAATCGAG
* * * *
71256870 GCCAATGCCATGTCCCAGACAGGTCTTACACTAGCT-TGCATATCTCGAG
1 GCCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCT-CATA-ATCGAG
** * * * * * * ** *
71256919 GCTAAT-CAATGTCCCAAACATGTCTTCCACTAGCTCTCGT-CTTAAT
1 GCCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCATAATCGAG
*
71256965 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAAACA-GGTCTTACACTGGCTCTCATAATCGAG
* * *
71257013 GCCGATG-CATGTCCTAGACATGTCTTACACT
1 GCCGATGCCATGTCCCAAACAGGTCTTACACT
71257044 AGCACACATC
Statistics
Matches: 243, Mismatches: 58, Indels: 32
0.73 0.17 0.10
Matches are distributed among these distances:
44 29 0.12
45 2 0.01
46 20 0.08
47 43 0.18
48 70 0.29
49 79 0.33
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCATAATCGAG
Found at i:71257024 original size:142 final size:145
Alignment explanation
Indices: 71256678--71257046 Score: 403
Period size: 142 Copynumber: 2.6 Consensus size: 145
71256668 ATAGGGTACG
** * *
71256678 ATGCCGATGCCATGGACCAAACATGGTCTTACACTGGCTCACACATCTAAGTCGATGCCATGTCC
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCT-AGCCGATGCCATGTCC
* * * * *
71256743 CAGACAGGTCTTACACT-GACTTTCATATATCGAGGCTGATGCCATGTCCCAGACAGGTCTTACT
65 CAGACAGGTCTTACACTAG-CTTGCATATATCGAGGCTAATGCAATGTCCCAAACAGGTCTTACA
* * *
71256807 CTGGCTCTTATCTATCG
129 CTAGCTCTCATCTATCA
* * ** * * *
71256824 GTGTCGATGCCATGTCCCAAACA-GGTCTTACACT--AACACATGTCAAGCCAATGCCATGTCCC
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCTAGCCGATGCCATGTCCC
* * *
71256886 AGACAGGTCTTACACTAGCTTGCATATCTCGAGGCTAAT-CAATGTCCCAAACATGTCTTCCACT
66 AGACAGGTCTTACACTAGCTTGCATATATCGAGGCTAATGCAATGTCCCAAACAGGTCTTACACT
*
71256950 AGCTCTCGTCT-T-A
131 AGCTCTCATCTATCA
* * *
71256963 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCCGATG-CATGTCC
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACAT-ATCTAGCCGATGCCATGTCC
* *
71257027 TAGACATGTCTTACACTAGC
65 CAGACAGGTCTTACACTAGC
71257047 ACACATCCAT
Statistics
Matches: 183, Mismatches: 35, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
139 21 0.11
140 12 0.07
141 28 0.15
142 78 0.43
143 14 0.08
145 11 0.06
146 19 0.10
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (145 bp):
ATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCTAGCCGATGCCATGTCCC
AGACAGGTCTTACACTAGCTTGCATATATCGAGGCTAATGCAATGTCCCAAACAGGTCTTACACT
AGCTCTCATCTATCA
Found at i:71258744 original size:6 final size:6
Alignment explanation
Indices: 71258733--71258767 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
71258723 CATAGTAAAA
71258733 TATATT TATATT TATATT TATATT TATATT TATAT
1 TATATT TATATT TATATT TATATT TATATT TATAT
71258768 AAATATCATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (6 bp):
TATATT
Found at i:71258773 original size:18 final size:18
Alignment explanation
Indices: 71258734--71258773 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
71258724 ATAGTAAAAT
**
71258734 ATATTTATATTTATATTT
1 ATATTTATATTTATATAA
71258752 ATATTTATATTTATATAA
1 ATATTTATATTTATATAA
71258770 ATAT
1 ATAT
71258774 CATAATCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
ATATTTATATTTATATAA
Found at i:71259335 original size:9 final size:9
Alignment explanation
Indices: 71259321--71259470 Score: 192
Period size: 9 Copynumber: 16.0 Consensus size: 9
71259311 AAAATCTAAC
71259321 CATAACTTA
1 CATAACTTA
71259330 CATAACTTA
1 CATAACTTA
* *
71259339 TATAACATA
1 CATAACTTA
71259348 CATAACTTA
1 CATAACTTA
*
71259357 CATAGCTTA
1 CATAACTTA
71259366 CATAACTTA
1 CATAACTTA
71259375 CATAACTTA
1 CATAACTTA
*
71259384 TATAACTTA
1 CATAACTTA
71259393 CATAACATTTA
1 CATAAC--TTA
71259404 CATAACTTA
1 CATAACTTA
*
71259413 CATAGCTTA
1 CATAACTTA
71259422 CATAACTTA
1 CATAACTTA
*
71259431 CATAAATATATA
1 CAT-AA-CT-TA
71259443 TCATAACTTA
1 -CATAACTTA
71259453 CATAACTTA
1 CATAACTTA
71259462 CATAACTTA
1 CATAACTTA
71259471 AGTAATACAT
Statistics
Matches: 123, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
9 101 0.82
10 4 0.03
11 11 0.09
12 4 0.03
13 3 0.02
ACGTcount: A:0.45, C:0.19, G:0.01, T:0.35
Consensus pattern (9 bp):
CATAACTTA
Found at i:71262404 original size:33 final size:33
Alignment explanation
Indices: 71262362--71262427 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
71262352 TATAAGTGTG
*
71262362 TACGTGTTATTATGGACGACAACAGGCTTGGAA
1 TACGTGTTATTATAGACGACAACAGGCTTGGAA
71262395 TACGTGTTATTATAGACGACAACAGGCTTGGAA
1 TACGTGTTATTATAGACGACAACAGGCTTGGAA
71262428 AATAACCTCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (33 bp):
TACGTGTTATTATAGACGACAACAGGCTTGGAA
Found at i:71265937 original size:138 final size:138
Alignment explanation
Indices: 71265381--71265941 Score: 795
Period size: 138 Copynumber: 4.0 Consensus size: 138
71265371 ACGTAGATAA
71265381 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
* * ** * *
71265446 TAAACAGTTATATTAATTAATTTTGGCCAAAATATAAAAGACATGGAAATTAATAATCTTTTGAA
66 TAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATAAAAATTAATATTCTTTTGGA
71265511 AAGAATAT
131 AAGAATAT
* * *
71265519 AATTAATATTTGAATTTGATTCATATAAAATACAAATATTAATTTTATATATTTTACCAAATTTA
1 AATTAATATATGAATTTGATTC--AT---ACA-AAATATTAATTGTATATATTTTACCAAATTTA
* *
71265584 TTAATATAAACAGTTATATTCATTAATTTCGTTC-AAA-ATAAAAGACATAAAAATTAATATTCT
60 TTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATAAAAATTAATATTCT
71265647 TTTGGAAAGAATAT
125 TTTGGAAAGAATAT
* * * *
71265661 AATTAAAATATTAACTTGATTCATACAAAATATTAATTGTATATATTTTTACTAAATTTATTAAT
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATA-TTTTACCAAATTTATTAAT
* * *
71265726 ATAAACAGCTATATTAA-TAGATTTCGGTCAAAATATAAAAGAGATAAAAATTAATATTATTTTG
65 ATAAACAGTTATATTAATTA-ATTTCGGTCAAAATATAAAAGACATAAAAATTAATATTCTTTTG
*
71265790 GAAATAATAT
129 GAAAGAATAT
***
71265800 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTATTGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
* * * *
71265865 TAGACAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTCGA
66 TAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATAAAAATTAATATTCTTTTGGA
71265930 AAGAATAT
131 AAGAATAT
71265938 AATT
1 AATT
71265942 CATTTTTCTA
Statistics
Matches: 375, Mismatches: 37, Indels: 22
0.86 0.09 0.05
Matches are distributed among these distances:
136 19 0.05
137 43 0.11
138 108 0.29
139 81 0.22
140 4 0.01
142 54 0.14
143 5 0.01
144 61 0.16
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.40
Consensus pattern (138 bp):
AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
TAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATAAAAATTAATATTCTTTTGGA
AAGAATAT
Found at i:71266052 original size:74 final size:75
Alignment explanation
Indices: 71265917--71266065 Score: 219
Period size: 74 Copynumber: 2.0 Consensus size: 75
71265907 ATGAAAATTA
* * *
71265917 ATATTCTTTTCGAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTCTTCTCTATTAATAAGG
1 ATATTCTTTTCGAAAGAACATAATTCATTTTTCTAACTTTCCATTTGCCTTCTCTACTAATAAGG
71265982 GAATAATCAT
66 GAATAATCAT
* ** * *
71265992 ATATTCTTTTGGAAA-AACATAATTCATTTTTCTAACTTTTTATTTGCCTTTTCTACTAATAATG
1 ATATTCTTTTCGAAAGAACATAATTCATTTTTCTAACTTTCCATTTGCCTTCTCTACTAATAAGG
71266056 GAATAATCAT
66 GAATAATCAT
71266066 GATTTTTCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
74 52 0.79
75 14 0.21
ACGTcount: A:0.32, C:0.14, G:0.07, T:0.46
Consensus pattern (75 bp):
ATATTCTTTTCGAAAGAACATAATTCATTTTTCTAACTTTCCATTTGCCTTCTCTACTAATAAGG
GAATAATCAT
Found at i:71267144 original size:42 final size:42
Alignment explanation
Indices: 71267056--71267208 Score: 137
Period size: 42 Copynumber: 3.6 Consensus size: 42
71267046 TAACTGACAT
* * * * * * *
71267056 AATATATTTGGCACCTTAGTACATTATCGAAAAG-TCTGAAGT
1 AATATATCTGGCACCTCAGTGCATCATCCAAAAGTTC-AAAGA
* ** * *
71267098 AATATATCTGGCACCTCAATGCATCATCGGAAATTTTAAAGA
1 AATATATCTGGCACCTCAGTGCATCATCCAAAAGTTCAAAGA
* *
71267140 AATATATCTGACACTTCAGTGCATCATCCAAAAGTTCAAAGA
1 AATATATCTGGCACCTCAGTGCATCATCCAAAAGTTCAAAGA
* * *
71267182 AATATATTTGGAACCTCAGTGAATCAT
1 AATATATCTGGCACCTCAGTGCATCAT
71267209 ATCTAACTGG
Statistics
Matches: 88, Mismatches: 22, Indels: 2
0.79 0.20 0.02
Matches are distributed among these distances:
42 87 0.99
43 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (42 bp):
AATATATCTGGCACCTCAGTGCATCATCCAAAAGTTCAAAGA
Found at i:71270351 original size:26 final size:26
Alignment explanation
Indices: 71270322--71270431 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
71270312 TGGTACAAAT
*
71270322 TGATAATAGGTTAGGTAAATGTTCAA
1 TGATAATAGGTTAGGTAAATGTTCCA
71270348 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
71270374 TGATAATGGGTTAGGTAAATGTTCCG
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
71270400 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
71270426 TGATAA
1 TGATAA
71270432 GAATTTCATG
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:71272093 original size:27 final size:27
Alignment explanation
Indices: 71272052--71272166 Score: 158
Period size: 27 Copynumber: 4.2 Consensus size: 27
71272042 GAGGAAGCGT
*
71272052 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
71272079 TCTGGTGGCTCTGCCACAAATATCTAA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
71272106 ACTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
71272133 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
71272161 TCTGGT
1 TCTGGT
71272167 AACTTTGTCA
Statistics
Matches: 76, Mismatches: 11, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
27 70 0.92
28 6 0.08
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.33
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:71272181 original size:27 final size:26
Alignment explanation
Indices: 71272114--71272191 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 26
71272104 AAACTGGTGG
**
71272114 CTCTGCCACATATATCTGTTCTGGTGG
1 CTCTGCCACAT-TATCTGTTCTGGTAA
71272141 CTCTGCCACGATTATCTGTATCTGGTAA
1 CTCTGCCAC-ATTATCTGT-TCTGGTAA
* *
71272169 CTTTGTCACATTATCTGTTCTGG
1 CTCTGCCACATTATCTGTTCTGG
71272192 CAGCCATGCT
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
26 5 0.11
27 25 0.56
28 15 0.33
ACGTcount: A:0.17, C:0.24, G:0.19, T:0.40
Consensus pattern (26 bp):
CTCTGCCACATTATCTGTTCTGGTAA
Found at i:71272184 original size:54 final size:54
Alignment explanation
Indices: 71272063--71272191 Score: 152
Period size: 54 Copynumber: 2.4 Consensus size: 54
71272053 CTGGTGGCTA
* * **
71272063 TGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTAAACTGGTGGCTC
1 TGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTAAACTGGTAACTC
* * * * *
71272117 TGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTAACTT
1 TGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCT-AAACTGGTAACTC
*
71272172 TGTCACAT-TATCTGTTCTGG
1 TGCCACATATATCTGTTCTGG
71272192 CAGCCATGCT
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 49 0.77
55 15 0.23
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (54 bp):
TGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTAAACTGGTAACTC
Found at i:71276723 original size:10 final size:10
Alignment explanation
Indices: 71276681--71276724 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
71276671 TAAAGAACAT
71276681 ATTTTCTATAA
1 ATTTTC-ATAA
71276692 A-TTTCATAA
1 ATTTTCATAA
* *
71276701 TTTTTCATCA
1 ATTTTCATAA
71276711 ATTTTCATAA
1 ATTTTCATAA
71276721 ATTT
1 ATTT
71276725 ACATTTTAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
9 4 0.14
10 23 0.82
11 1 0.04
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.55
Consensus pattern (10 bp):
ATTTTCATAA
Found at i:71280194 original size:2 final size:2
Alignment explanation
Indices: 71280187--71280223 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
71280177 GAGACTAGTC
71280187 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
71280224 CATGTCATGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:71282256 original size:30 final size:30
Alignment explanation
Indices: 71282222--71282282 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
71282212 TCCTTAACTC
71282222 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * * *
71282252 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
71282282 A
1 A
71282283 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:71290455 original size:30 final size:30
Alignment explanation
Indices: 71290421--71290480 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
71290411 ACTTAACAAG
71290421 CAAATACCTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
* *
71290451 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
71290481 TAATAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.58, C:0.15, G:0.02, T:0.25
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:71292277 original size:18 final size:18
Alignment explanation
Indices: 71292254--71292289 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
71292244 AGATTTTTTC
*
71292254 TAAGGTTAAAACAGAGGA
1 TAAGGTTAAAACAAAGGA
71292272 TAAGGTTAAAACAAAGGA
1 TAAGGTTAAAACAAAGGA
71292290 GACAAGAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.53, C:0.06, G:0.25, T:0.17
Consensus pattern (18 bp):
TAAGGTTAAAACAAAGGA
Found at i:71297322 original size:21 final size:20
Alignment explanation
Indices: 71297253--71297322 Score: 59
Period size: 21 Copynumber: 3.4 Consensus size: 20
71297243 CATGGTTGGA
*
71297253 CACACGGGTGTGTAGGGTAGT
1 CACACGAGTGTGT-GGGTAGT
* * *
71297274 TACACGAGCGTGAGGGGTAGT
1 CACACGAGTGTG-TGGGTAGT
* *
71297295 CATACGAGTGTGTGGGATAGC
1 CACACGAGTGTGTGGG-TAGT
71297316 CACACGA
1 CACACGA
71297323 CCATGTTTGG
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
20 3 0.08
21 34 0.92
ACGTcount: A:0.24, C:0.17, G:0.39, T:0.20
Consensus pattern (20 bp):
CACACGAGTGTGTGGGTAGT
Found at i:71300733 original size:40 final size:40
Alignment explanation
Indices: 71300678--71300818 Score: 246
Period size: 40 Copynumber: 3.5 Consensus size: 40
71300668 CTGAAACTGA
*
71300678 TACTGTGATGGGCTAAGGCCCTACTGCATATTCGATATTG
1 TACTGAGATGGGCTAAGGCCCTACTGCATATTCGATATTG
* *
71300718 TACTGAAATGGGCTAAGGCCCTACTGCATATTTGATATTG
1 TACTGAGATGGGCTAAGGCCCTACTGCATATTCGATATTG
*
71300758 TACTGAGATGGGCTAAGGCCCTACTGCATATTCGATACTG
1 TACTGAGATGGGCTAAGGCCCTACTGCATATTCGATATTG
71300798 TACTGAGATGGGCTAAGGCCC
1 TACTGAGATGGGCTAAGGCCC
71300819 AAACTATTAT
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 95 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
TACTGAGATGGGCTAAGGCCCTACTGCATATTCGATATTG
Found at i:71309682 original size:46 final size:46
Alignment explanation
Indices: 71309535--71309753 Score: 235
Period size: 46 Copynumber: 4.7 Consensus size: 46
71309525 GTTGTAGGCT
* * **
71309535 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGAGAGCC
** * * * * *
71309581 AGTGTAAGACCATGTCTGGGACATGGCATCAACATCGAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAAGATGAGAGCC
71309629 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATG-AGAGCC
* * * *
71309675 AGTGTAAGACATATCTAGGACATGCATCGG-CTACGAGATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CAAGATGAGAGCC
71309721 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
71309754 ACCTTACCCA
Statistics
Matches: 144, Mismatches: 21, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
45 3 0.02
46 70 0.49
47 41 0.28
48 30 0.21
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.21
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGAGAGCC
Found at i:71309753 original size:94 final size:94
Alignment explanation
Indices: 71309535--71309753 Score: 268
Period size: 94 Copynumber: 2.3 Consensus size: 94
71309525 GTTGTAGGCT
* ** * *
71309535 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGCCAGTGTAAGACCATATCTAG
*
71309600 GACATGGCATCAACATCGAGACGAGTGCT
66 GACATGGCATCAACATCGAGACGAGTGCC
*
71309629 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTA-AGCCAGTGTAAGA-CATATCTA
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATG-AGAGCCAGTGTAAGACCATATCTA
** *
71309692 GGACAT-GCATCGGC-TACGAGATGA-TAGCC
65 GGACATGGCATCAACAT-CGAGACGAGT-GCC
71309721 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
71309754 ACCTTACCCA
Statistics
Matches: 110, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
91 2 0.02
92 24 0.22
93 26 0.24
94 57 0.52
95 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.21
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGCCAGTGTAAGACCATATCTAG
GACATGGCATCAACATCGAGACGAGTGCC
Found at i:71316702 original size:16 final size:18
Alignment explanation
Indices: 71316666--71316703 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
71316656 ATCATTATTT
*
71316666 AAATAAAATACAGTGGTA
1 AAATAAAATACAATGGTA
71316684 AAATAAAATA-AAT-GTA
1 AAATAAAATACAATGGTA
71316700 AAAT
1 AAAT
71316704 CCATATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 7 0.37
17 2 0.11
18 10 0.53
ACGTcount: A:0.63, C:0.03, G:0.11, T:0.24
Consensus pattern (18 bp):
AAATAAAATACAATGGTA
Found at i:71319903 original size:13 final size:13
Alignment explanation
Indices: 71319887--71319911 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71319877 GTACAAGAGG
71319887 TTTGATTCCTTTA
1 TTTGATTCCTTTA
71319900 TTTGATTCCTTT
1 TTTGATTCCTTT
71319912 GTGATGTCTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.16, G:0.08, T:0.64
Consensus pattern (13 bp):
TTTGATTCCTTTA
Found at i:71325642 original size:19 final size:19
Alignment explanation
Indices: 71325596--71325648 Score: 54
Period size: 21 Copynumber: 2.7 Consensus size: 19
71325586 TTGAAATCAA
**
71325596 ATATATTTGTAATATTATAT
1 ATATATTTAAAAT-TTATAT
71325616 ATGATATTATAAAATTTATAT
1 AT-ATATT-TAAAATTTATAT
71325637 AT-TATTTAAAAT
1 ATATATTTAAAAT
71325649 GCCTTTCTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
18 6 0.21
19 4 0.14
20 2 0.07
21 13 0.45
22 4 0.14
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (19 bp):
ATATATTTAAAATTTATAT
Found at i:71328741 original size:10 final size:9
Alignment explanation
Indices: 71328720--71328773 Score: 51
Period size: 8 Copynumber: 6.2 Consensus size: 9
71328710 ATAAAAATAT
*
71328720 TTTTTAAAA
1 TTTTTATAA
71328729 TTTTTATACA
1 TTTTTATA-A
* *
71328739 TTTTAATAT
1 TTTTTATAA
71328748 TTTTTAT-A
1 TTTTTATAA
71328756 TTTTTA-AA
1 TTTTTATAA
71328764 TTTTTA-AA
1 TTTTTATAA
71328772 TT
1 TT
71328774 AAAAATAATA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
8 17 0.45
9 13 0.34
10 8 0.21
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (9 bp):
TTTTTATAA
Found at i:71328742 original size:18 final size:18
Alignment explanation
Indices: 71328721--71328769 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
71328711 TAAAAATATT
71328721 TTTTAAAATTTTTATACA
1 TTTTAAAATTTTTATACA
* *
71328739 TTTTAATATTTTT-TATA
1 TTTTAAAATTTTTATACA
*
71328756 TTTTTAAATTTTTA
1 TTTTAAAATTTTTA
71328770 AATTAAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 14 0.54
18 12 0.46
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTTAAAATTTTTATACA
Found at i:71331726 original size:100 final size:98
Alignment explanation
Indices: 71331553--71331737 Score: 298
Period size: 100 Copynumber: 1.9 Consensus size: 98
71331543 TTGGCAATTG
* **
71331553 AGGATGTATACTGATTCTGGTTTTGTATATATTTGTAATATGTCAATCTACTATTTCATTTTAGG
1 AGGATGGATACTGATTCTGGTTTTGTATATATTTGTAATATGTCAATAGACTATTTCATTTTAGG
71331618 CTTTATTTCATTTTCCTTTTTTTGGAGTCAAGTTT
66 CTTTATTTC-TTTT-CTTTTTTTGGAGTCAAGTTT
* * *
71331653 AGGATGGATACTGGTTCTGGTTTTGTATATATTTGTAATATGTCAATAGCCTATTTCATTTTTGG
1 AGGATGGATACTGATTCTGGTTTTGTATATATTTGTAATATGTCAATAGACTATTTCATTTTAGG
71331718 CTTTATTTCTTTTCTTTTTT
66 CTTTATTTCTTTTCTTTTTT
71331738 CTTTTGGTAA
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
98 7 0.09
99 4 0.05
100 68 0.86
ACGTcount: A:0.21, C:0.11, G:0.16, T:0.53
Consensus pattern (98 bp):
AGGATGGATACTGATTCTGGTTTTGTATATATTTGTAATATGTCAATAGACTATTTCATTTTAGG
CTTTATTTCTTTTCTTTTTTTGGAGTCAAGTTT
Found at i:71333504 original size:23 final size:23
Alignment explanation
Indices: 71333477--71333524 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
71333467 CTTAATAGCA
71333477 ATCATATAACC-AGAACGGA-ACAG
1 ATCATAT-ACCTAGAAC-GATACAG
71333500 ATCATATACCTAGAACGATACAG
1 ATCATATACCTAGAACGATACAG
71333523 AT
1 AT
71333525 AAAAAAATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 5 0.22
23 18 0.78
ACGTcount: A:0.46, C:0.21, G:0.15, T:0.19
Consensus pattern (23 bp):
ATCATATACCTAGAACGATACAG
Found at i:71335991 original size:38 final size:39
Alignment explanation
Indices: 71335939--71336012 Score: 114
Period size: 38 Copynumber: 1.9 Consensus size: 39
71335929 AATGTATTTT
* *
71335939 AATATTTTTAAATAATTTTTATTATTAA-AAATATTAAA
1 AATATTATTAAATAATTTTTACTATTAATAAATATTAAA
*
71335977 AATATTATTCAATAATTTTTACTATTAATAAATATT
1 AATATTATTAAATAATTTTTACTATTAATAAATATT
71336013 TGAATTATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
38 25 0.78
39 7 0.22
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (39 bp):
AATATTATTAAATAATTTTTACTATTAATAAATATTAAA
Found at i:71338117 original size:40 final size:39
Alignment explanation
Indices: 71337974--71338115 Score: 248
Period size: 39 Copynumber: 3.6 Consensus size: 39
71337964 TCGATTGATA
71337974 ACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAT
1 ACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAT
71338013 ACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAT
1 ACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAT
* * *
71338052 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAT
1 ACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAT
71338091 AACCGGGCTAAGTCCCGAAGGCATT
1 -ACCGGGCTAAGTCCCGAAGGCATT
71338116 TGAGCTAGTG
Statistics
Matches: 99, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
39 75 0.76
40 24 0.24
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
ACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAT
Found at i:71338148 original size:79 final size:78
Alignment explanation
Indices: 71337974--71338150 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 78
71337964 TCGATTGATA
* * *
71337974 ACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTATACCGGGCTAAGTCCCGAAGGCATTCG
1 ACCGGGCTAACTCCCGAAGGCATTCGTGCGAGTCACTATACCGGGCTAAGTCCCGAAGGCATTCG
* * *
71338039 TGCGAGTTATTAT
66 AGCGAGTGACTAT
* * *
71338052 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTATAACCGGGCTAAGTCCCGAAGGCATTT
1 ACCGGGCTAACTCCCGAAGGCATTCGTGCGAGTCACTAT-ACCGGGCTAAGTCCCGAAGGCATTC
* *
71338117 GAGCTAGTGGCTAT
65 GAGCGAGTGACTAT
71338131 ATCC-GGCTAAACT-CCGAAGG
1 A-CCGGGCT-AACTCCCGAAGG
71338151 TACTCGTTTG
Statistics
Matches: 86, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
78 36 0.42
79 45 0.52
80 5 0.06
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (78 bp):
ACCGGGCTAACTCCCGAAGGCATTCGTGCGAGTCACTATACCGGGCTAAGTCCCGAAGGCATTCG
AGCGAGTGACTAT
Found at i:71338150 original size:39 final size:40
Alignment explanation
Indices: 71337971--71338150 Score: 170
Period size: 39 Copynumber: 4.6 Consensus size: 40
71337961 TATTCGATTG
* * * * *
71337971 ATAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATT
1 ATAACCGGGCTAACTCCCGAAGGCATTTGAGCGAGTCACT
* * * * *
71338011 AT-ACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATT
1 ATAACCGGGCTAACTCCCGAAGGCATTTGAGCGAGTCACT
* *
71338050 AT-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACT
1 ATAACCGGGCTAACTCCCGAAGGCATTTGAGCGAGTCACT
* * **
71338089 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAACTCCCGAAGGCATTTGAGCGAGTCACT
*
71338129 ATATCC-GGCTAAACT-CCGAAGG
1 ATAACCGGGCT-AACTCCCGAAGG
71338151 TACTCGTTTG
Statistics
Matches: 129, Mismatches: 9, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
39 86 0.67
40 43 0.33
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAACTCCCGAAGGCATTTGAGCGAGTCACT
Found at i:71341031 original size:23 final size:24
Alignment explanation
Indices: 71341003--71341055 Score: 79
Period size: 26 Copynumber: 2.1 Consensus size: 24
71340993 CCTCTTAGTG
*
71341003 AAAAAAATAATTTAATATATTATTT
1 AAAAAACTAATTTAATATATT-TTT
71341028 AAAAAACTTAATTTAATATATTTTT
1 AAAAAAC-TAATTTAATATATTTTT
71341053 AAA
1 AAA
71341056 GACATATTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 12 0.46
26 14 0.54
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (24 bp):
AAAAAACTAATTTAATATATTTTT
Found at i:71343200 original size:29 final size:29
Alignment explanation
Indices: 71343165--71343297 Score: 212
Period size: 29 Copynumber: 4.6 Consensus size: 29
71343155 ATAAACGATC
*** *
71343165 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
71343194 TCGCACACATAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
71343223 TTGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
71343252 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
71343281 TCGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
71343298 ATCTTGTCAC
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 96 1.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATAATTTAAGT
Found at i:71347074 original size:54 final size:54
Alignment explanation
Indices: 71347009--71347117 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
71346999 TTATTATATG
71347009 TGAAAGTACATGTGTGAAAATTTCATGCTTTAATATTTTCATTTGTGAGTGAAA
1 TGAAAGTACATGTGTGAAAATTTCATGCTTTAATATTTTCATTTGTGAGTGAAA
71347063 TGAAAGTACATGTGTGAAAATTTCATGCTTTAATATTTTCATTTGTGAGTGAAA
1 TGAAAGTACATGTGTGAAAATTTCATGCTTTAATATTTTCATTTGTGAGTGAAA
71347117 T
1 T
71347118 TATTAAATAG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.33, C:0.07, G:0.18, T:0.41
Consensus pattern (54 bp):
TGAAAGTACATGTGTGAAAATTTCATGCTTTAATATTTTCATTTGTGAGTGAAA
Found at i:71349094 original size:45 final size:45
Alignment explanation
Indices: 71349028--71349204 Score: 234
Period size: 45 Copynumber: 4.0 Consensus size: 45
71349018 TATCGCACAG
* *
71349028 TACTATTCGGGCCTTTAAGCCTAGCAGGCTATAACGCCAGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAAA
**
71349073 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAAA
* *
71349118 TACTACTCGGGCCTTTGAGCCTAGCAGGCTATAATG-CAGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCA-GTGAAA
* * * *
71349163 TACTATTCAGG-CTTCGAGCCTAGCAGGC-AAAATGCCGGTGAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAA
71349205 TGAGTTCGGG
Statistics
Matches: 116, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
43 9 0.08
44 17 0.15
45 90 0.78
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAAA
Found at i:71363491 original size:3 final size:3
Alignment explanation
Indices: 71363483--71363513 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
71363473 CTATTCAGGA
71363483 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
71363514 TACATTTGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:71364337 original size:24 final size:26
Alignment explanation
Indices: 71364304--71364351 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
71364294 TCAATTTGCA
*
71364304 TAAAATATTAAAATATT-AATAAATT
1 TAAAATATTAAAAAATTAAATAAATT
71364329 TAAAA-ATTAAAAAATTAAATAAA
1 TAAAATATTAAAAAATTAAATAAA
71364352 AATGAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (26 bp):
TAAAATATTAAAAAATTAAATAAATT
Found at i:71364343 original size:16 final size:17
Alignment explanation
Indices: 71364305--71364344 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
71364295 CAATTTGCAT
71364305 AAAATATTAAAATATTAA
1 AAAAT-TTAAAATATTAA
*
71364323 TAAATTTAAAA-ATTAA
1 AAAATTTAAAATATTAA
71364339 AAAATT
1 AAAATT
71364345 AAATAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 10 0.50
17 6 0.30
18 4 0.20
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
AAAATTTAAAATATTAA
Found at i:71367679 original size:43 final size:43
Alignment explanation
Indices: 71367591--71367693 Score: 129
Period size: 43 Copynumber: 2.4 Consensus size: 43
71367581 TACCAAGATG
* * *
71367591 TGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTATTA
1 TGATTACGTATAAGACCATGTCTAGGACATTGGCATCGTATTA
*
71367634 TGATTACGTCTAAGACCATGTCT-GAGACATTGGCATCGT-TATA
1 TGATTACGTATAAGACCATGTCTAG-GACATTGGCATCGTAT-TA
*
71367677 TGATTTCGTATAAGACC
1 TGATTACGTATAAGACC
71367694 CTGTTTGAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
42 2 0.04
43 51 0.96
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (43 bp):
TGATTACGTATAAGACCATGTCTAGGACATTGGCATCGTATTA
Found at i:71368138 original size:2 final size:2
Alignment explanation
Indices: 71368131--71368155 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
71368121 ATTGAATTGA
71368131 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
71368156 ATTGCTTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:71376476 original size:19 final size:19
Alignment explanation
Indices: 71376452--71376489 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
71376442 GGAACACATC
71376452 ATGAATCCAGTCCAACTCT
1 ATGAATCCAGTCCAACTCT
71376471 ATGAATCCAGTCCAACTCT
1 ATGAATCCAGTCCAACTCT
71376490 GGAGGTAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.32, G:0.11, T:0.26
Consensus pattern (19 bp):
ATGAATCCAGTCCAACTCT
Found at i:71387031 original size:47 final size:47
Alignment explanation
Indices: 71386895--71387211 Score: 474
Period size: 47 Copynumber: 6.7 Consensus size: 47
71386885 GATTTTACGC
* *
71386895 GATGAATGTGAATGTGTATAAATATGAGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTAT--ATATGTGATAAGGCCTAATGGCCGATGT
71386944 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGT
*
71386993 GATGAATGTGAAAGTGTATATATGTGATAAGACCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
71387040 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* * *
71387087 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* * * * *
71387134 GATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
*
71387181 GATGGATGTGAAAGTGTATCA-ATGTGATAAG
1 GATGAATGTGAAAGTGTAT-ATATGTGATAAG
71387212 TCCTGAAGGG
Statistics
Matches: 252, Mismatches: 13, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
47 190 0.75
48 1 0.00
49 58 0.23
51 3 0.01
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
Found at i:71393778 original size:42 final size:42
Alignment explanation
Indices: 71393668--71393787 Score: 152
Period size: 43 Copynumber: 2.8 Consensus size: 42
71393658 TATCATACCA
* *
71393668 ATGCCGTATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
* * * *
71393710 ATACCAATAGCCCAGCTATGGCCTTACATG-AAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGTAA-TCTCATATCG
*
71393753 ATGCCATATCCCAGATATGGTCTTACACGTAATCT
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCT
71393788 TAGTAACCCT
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
42 29 0.45
43 35 0.55
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
Found at i:71400751 original size:46 final size:47
Alignment explanation
Indices: 71400645--71400756 Score: 136
Period size: 50 Copynumber: 2.3 Consensus size: 47
71400635 TGTCTTCGAC
** * *
71400645 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
71400695 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
71400741 ATGGACTTACATGGCT
1 ATGGACTTACATGGCT
71400757 TTTCTGTCCT
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 25 0.45
50 30 0.55
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:71409953 original size:39 final size:39
Alignment explanation
Indices: 71409896--71409974 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
71409886 AAAATATAGG
*
71409896 TATGGCATGTATATCTAGACTTTTACTCACACTAACTGT
1 TATGGCATGTATAGCTAGACTTTTACTCACACTAACTGT
71409935 TATGGCATGTATAGCTAGACTTTTACTCACACTAACTGT
1 TATGGCATGTATAGCTAGACTTTTACTCACACTAACTGT
71409974 T
1 T
71409975 TCGAGAACCG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (39 bp):
TATGGCATGTATAGCTAGACTTTTACTCACACTAACTGT
Found at i:71411366 original size:5 final size:5
Alignment explanation
Indices: 71411356--71411380 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
71411346 TGGCTCATTT
71411356 CTGTC CTGTC CTGTC CTGTC CTGTC
1 CTGTC CTGTC CTGTC CTGTC CTGTC
71411381 AACCCCAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.40, G:0.20, T:0.40
Consensus pattern (5 bp):
CTGTC
Found at i:71413327 original size:47 final size:47
Alignment explanation
Indices: 71413276--71413387 Score: 206
Period size: 47 Copynumber: 2.4 Consensus size: 47
71413266 GTAAAACGTG
71413276 TCTGGGACATGCATCAGCCGCATCATGATAGCCCGTATAAGACCACA
1 TCTGGGACATGCATCAGCCGCATCATGATAGCCCGTATAAGACCACA
*
71413323 TCTGGGACATGCATCAGCCGCATCATGATAGCCCGTGTAAGACCACA
1 TCTGGGACATGCATCAGCCGCATCATGATAGCCCGTATAAGACCACA
71413370 TCTGGGACATGGCATCAG
1 TCTGGGACAT-GCATCAG
71413388 TGTAGAGGTG
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
47 56 0.89
48 7 0.11
ACGTcount: A:0.28, C:0.29, G:0.24, T:0.20
Consensus pattern (47 bp):
TCTGGGACATGCATCAGCCGCATCATGATAGCCCGTATAAGACCACA
Found at i:71413423 original size:94 final size:91
Alignment explanation
Indices: 71413323--71413525 Score: 223
Period size: 91 Copynumber: 2.2 Consensus size: 91
71413313 TAAGACCACA
**
71413323 TCTGGGACATGCATCAGCCGC-ATCATGATAGCCCGTGTAAGACCACATCTGGGACATGGCATCA
1 TCTGGGACATGCATCAGCCGCAATCATGATAGCCAATGTAAGA-CACATCTGGGACAT-GCATC-
*
71413387 GTG-TAGAG-GTGAGTGCTAGTGTAAGACATG
63 G-GCTA-AGTGTCA-TGCTAGTGTAAGACATG
* ** * * * **
71413417 TTTGGGACATGCATTGGCCTCAATGATGTTAGCCAATGTAAGACATGTCTGGGACATGCATCGGC
1 TCTGGGACATGCATCAGCCGCAATCATGATAGCCAATGTAAGACACATCTGGGACATGCATCGGC
*
71413482 TAAGTTTCATGCTAGTGTAAGACATG
66 TAAGTGTCATGCTAGTGTAAGACATG
71413508 TCTGGGACATGCATCAGC
1 TCTGGGACATGCATCAGC
71413526 ACATGTACAC
Statistics
Matches: 91, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
91 35 0.38
92 5 0.05
93 5 0.05
94 29 0.32
95 17 0.19
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (91 bp):
TCTGGGACATGCATCAGCCGCAATCATGATAGCCAATGTAAGACACATCTGGGACATGCATCGGC
TAAGTGTCATGCTAGTGTAAGACATG
Found at i:71413511 original size:44 final size:48
Alignment explanation
Indices: 71413400--71413522 Score: 159
Period size: 44 Copynumber: 2.7 Consensus size: 48
71413390 TAGAGGTGAG
* *
71413400 TGCTAGTGTAAGACATGTTTGGGACATGCATTGGCCTCAATGATGTTA
1 TGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATGATGTTA
* *
71413448 -GCCAATGTAAGACATGTCTGGGACATGCATCGG-CT-AA-G-T-TTCA
1 TGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATGATGTT-A
71413491 TGCTAGTGTAAGACATGTCTGGGACATGCATC
1 TGCTAGTGTAAGACATGTCTGGGACATGCATC
71413523 AGCACATGTA
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
42 2 0.03
43 2 0.03
44 30 0.45
45 2 0.03
46 2 0.03
47 29 0.43
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (48 bp):
TGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATGATGTTA
Found at i:71420858 original size:47 final size:46
Alignment explanation
Indices: 71420796--71421143 Score: 185
Period size: 47 Copynumber: 7.4 Consensus size: 46
71420786 AGAGCCAATA
* * *
71420796 TAAGACCATGTCTGGGACATGGCATCGACATTGAGATGATGGCTAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCGACGTTGAGATGATAGCCAGTG
* * *
71420844 TAAGACGTGTCTGGGACATGCATC-A-GTTGTGTCATGATAGCCCGTG
1 TAAGACATGTCTGGGACATGCATCGACGTTGAG--ATGATAGCCAGTG
* * * * * *
71420890 TAAGACCACGTCTGGGACATGGCATCGGCGTAGAGGTGAGT-GCTAGAG
1 TAAGA-CATGTCTGGGACAT-GCATCGACGTTGAGATGA-TAGCCAGTG
* * ** *
71420938 TAAGACATGTCTGGGACATGCATCGGCCTCAATGATGTTAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGACGTTGA-GATGATAGCCAGTG
* * * * *
71420985 TAAGACGTGTCTGGGACATGCATC-A-GCTAAGTTTCG-T-GCTAGTG
1 TAAGACATGTCTGGGACATGCATCGACGTTGAG-AT-GATAGCCAGTG
* * * * *
71421029 TAAGACATGTCTAGGACATGCATCAGCACG-TGTACACGAGAGCTAGTG
1 TAAGACATGTCTGGGACATGCATC-G-ACGTTG-AGATGATAGCCAGTG
* * * * *
71421077 TAAGACCATGTCTAGGACATGGCATCGGCCTCGATGGA-GCTAGCCAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCGACGTTGA--GATGATAGCCAGTG
71421126 TAAGA-ATGTCTGGGACAT
1 TAAGACATGTCTGGGACAT
71421144 AGCAGTGACA
Statistics
Matches: 232, Mismatches: 45, Indels: 47
0.72 0.14 0.15
Matches are distributed among these distances:
44 33 0.14
45 5 0.02
46 33 0.14
47 83 0.36
48 38 0.16
49 30 0.13
50 10 0.04
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (46 bp):
TAAGACATGTCTGGGACATGCATCGACGTTGAGATGATAGCCAGTG
Found at i:71420957 original size:94 final size:94
Alignment explanation
Indices: 71420796--71421143 Score: 316
Period size: 94 Copynumber: 3.7 Consensus size: 94
71420786 AGAGCCAATA
* * *
71420796 TAAGACCATGTCTGGGACATGGCATCGACATTGAGATGA-TGGCTAGTGTAAGACGTGTCTGGGA
1 TAAGACCATGTCTGGGACATGGCATCGGC-TAGAGATGAGT-GCTAGTGTAAGACATGTCTGGGA
* *
71420860 CATGCATCAG-TTGTGTCATGATAGCCCGTG
64 CATGCATCAGCATGTGTCATGATAGCCAGTG
* * *
71420890 TAAGACCACGTCTGGGACATGGCATCGGCGTAGAGGTGAGTGCTAGAGTAAGACATGTCTGGGAC
1 TAAGACCATGTCTGGGACATGGCATCGGC-TAGAGATGAGTGCTAGTGTAAGACATGTCTGGGAC
* * *** * *
71420955 ATGCATCGGCCTCAATGATGTTAGCCAGTG
65 ATGCATCAGCATGTGTCATGATAGCCAGTG
* * * ** *
71420985 TAAGA-CGTGTCTGGGACAT-GCATCAGCTA-AGTTTCGTGCTAGTGTAAGACATGTCTAGGACA
1 TAAGACCATGTCTGGGACATGGCATCGGCTAGAGATGAGTGCTAGTGTAAGACATGTCTGGGACA
* * * *
71421047 TGCATCAGCACGTGTACACGAGAGCTAGTG
66 TGCATCAGCATGTGT-CATGATAGCCAGTG
* * *
71421077 TAAGACCATGTCTAGGACATGGCATCGGCCT--CGATGGAGCTAGCCAGTGTAAGA-ATGTCTGG
1 TAAGACCATGTCTGGGACATGGCATCGG-CTAGAGAT-GAG-T-GCTAGTGTAAGACATGTCTGG
71421139 GACAT
62 GACAT
71421144 AGCAGTGACA
Statistics
Matches: 202, Mismatches: 43, Indels: 16
0.77 0.16 0.06
Matches are distributed among these distances:
91 37 0.18
92 16 0.08
93 19 0.09
94 84 0.42
95 22 0.11
96 13 0.06
97 11 0.05
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (94 bp):
TAAGACCATGTCTGGGACATGGCATCGGCTAGAGATGAGTGCTAGTGTAAGACATGTCTGGGACA
TGCATCAGCATGTGTCATGATAGCCAGTG
Found at i:71421046 original size:44 final size:47
Alignment explanation
Indices: 71420929--71421055 Score: 147
Period size: 44 Copynumber: 2.8 Consensus size: 47
71420919 GTAGAGGTGA
* *
71420929 GTGCTAGAGTAAGACATGTCTGGGACATGCATCGGCCTCAATGATGTT
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAG-CTCAATGATGTT
* * *
71420977 -AGCCAGTGTAAGACGTGTCTGGGACATGCATCAGCT-AA-G-T-TT
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCTCAATGATGTT
*
71421019 CGTGCTAGTGTAAGACATGTCTAGGACATGCATCAGC
1 -GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGC
71421056 ACGTGTACAC
Statistics
Matches: 68, Mismatches: 9, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
42 2 0.03
43 1 0.01
44 32 0.47
45 2 0.03
46 2 0.03
47 29 0.43
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (47 bp):
GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCTCAATGATGTT
Found at i:71423237 original size:46 final size:46
Alignment explanation
Indices: 71423149--71423554 Score: 580
Period size: 46 Copynumber: 8.8 Consensus size: 46
71423139 GAGACATGAC
* * * * *
71423149 GCCATAGTGTCTTTCAACTATGGTCTTACTCAGTTTC-TGTCATGTT
1 GCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCATGTT
* ** ***
71423195 TCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTT
1 GCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTT
* *** * *
71423241 GCCATGGTATCTTTCAACCAAGGTCTTGTTCATTTCATGTCACGTT
1 GCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTT
* *
71423287 GCTATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATTTT
1 GCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTT
71423333 GCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTT
1 GCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTT
* *
71423379 GCCATGGTATCTTTCAACCATAGTCTTACACATTACATATCATGTT
1 GCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTT
71423425 GCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTT
1 GCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTT
*
71423471 GCCAGGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTT
1 GCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTT
* *
71423517 GCCATGGTATCTTTCAACCATGGCCTTACGCATTTCAT
1 GCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
71423555 TTCAGAAAGA
Statistics
Matches: 329, Mismatches: 30, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.01
46 325 0.99
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
GCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTT
Found at i:71425451 original size:40 final size:40
Alignment explanation
Indices: 71425375--71425563 Score: 208
Period size: 39 Copynumber: 4.8 Consensus size: 40
71425365 GCTACTCGTT
* * * *
71425375 CAAAAGCCTTCGGGACATAGCCCGGTTAT-AGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCA-CAACTCGCA
*
71425415 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACTCGCA
* *
71425455 CAATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACTCGCA
* * *
71425494 CAATTGCCTTCGGG-CTTAGCCCGGATTTAT-TC-ACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA--TATCACAACTCGCA
* *
71425533 CAAATGCCTTCAGGACTTAGCCCGGTTATCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCA
71425564 TCCGAACATT
Statistics
Matches: 129, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
38 3 0.02
39 65 0.50
40 57 0.44
41 4 0.03
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACTCGCA
Found at i:71425490 original size:79 final size:78
Alignment explanation
Indices: 71425375--71425563 Score: 204
Period size: 79 Copynumber: 2.4 Consensus size: 78
71425365 GCTACTCGTT
* * * *
71425375 CAAAAGCCTTCGGGACATAGCCCGGTTAT-AGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGG-CTTAGCCCGGTTATCAGCAACTCACACAAATGCCTTCGGG-CTTAACCCG
*
71425439 GA-TATCACAACTCGCA
64 GATTAT-AC-ACTAGCA
* * * *
71425455 CAATTGCCTTCGGGCTTAGCCCGGATATCA-CAACTCACACAATTGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTTATCAGCAACTCACACAAATGCCTTCGGGCTTAACCCGGA
*
71425519 TTTATTCACTAGCA
66 -TTATACACTAGCA
*
71425533 CAAATGCCTTCAGGACTTAGCCCGGTTATCA
1 CAAATGCCTTC-GGGCTTAGCCCGGTTATCA
71425564 TCCGAACATT
Statistics
Matches: 92, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 26 0.28
79 50 0.54
80 16 0.17
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTTATCAGCAACTCACACAAATGCCTTCGGGCTTAACCCGGA
TTATACACTAGCA
Found at i:71433980 original size:80 final size:80
Alignment explanation
Indices: 71433840--71434043 Score: 252
Period size: 80 Copynumber: 2.5 Consensus size: 80
71433830 CGGAATACAA
* *
71433840 CCGGATATAACCAC-ACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTTGCACAAAT
1 CCGGATATAACAACTA-GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAAT
*
71433904 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * * *
71433920 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATT
1 CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTAGCACAAAT
*
71433984 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * *
71434000 CCGGATATAA-ATACTAGCATAAATGTCTTCGGGACTTAGCCCGG
1 CCGGATATAACA-ACTAGCACGAATGCCTTCGGGTCTTAGCCCGG
71434044 GTATCATTCA
Statistics
Matches: 108, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
79 1 0.01
80 106 0.98
81 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:71434016 original size:40 final size:40
Alignment explanation
Indices: 71433856--71434043 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
71433846 ATAACCACAC
* ** *
71433856 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAATACTA
* *
71433896 GCACAAATGCCTTCGGGTATTAGCCCGGATATAACA-ACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAA-ATACTA
* * *
71433936 GCACGAATGCCTTCGGGTCTTAGCCCGGATGT-AGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAAT-ACTA
* *
71433976 GCACAATTGCCTTCGGGTCTTAACCCGGATATAAATACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAATACTA
* * *
71434016 GCATAAATGTCTTCGGGACTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
71434044 GTATCATTCA
Statistics
Matches: 126, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 1 0.01
40 123 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAATACTA
Found at i:71441948 original size:80 final size:80
Alignment explanation
Indices: 71441808--71442011 Score: 252
Period size: 80 Copynumber: 2.5 Consensus size: 80
71441798 CGGAATACAA
* *
71441808 CCGGATATAACCAC-ACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTTGCACAAAT
1 CCGGATATAACAACTA-GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAAT
*
71441872 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * * *
71441888 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATT
1 CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTAGCACAAAT
*
71441952 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * *
71441968 CCGGATATAA-ATACTAGCATAAATGTCTTCGGGACTTAGCCCGG
1 CCGGATATAACA-ACTAGCACGAATGCCTTCGGGTCTTAGCCCGG
71442012 GTATCATTCA
Statistics
Matches: 108, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
79 1 0.01
80 106 0.98
81 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:71441984 original size:40 final size:40
Alignment explanation
Indices: 71441824--71442011 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
71441814 ATAACCACAC
* ** *
71441824 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAATACTA
* *
71441864 GCACAAATGCCTTCGGGTATTAGCCCGGATATAACA-ACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAA-ATACTA
* * *
71441904 GCACGAATGCCTTCGGGTCTTAGCCCGGATGT-AGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAAT-ACTA
* *
71441944 GCACAATTGCCTTCGGGTCTTAACCCGGATATAAATACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAATACTA
* * *
71441984 GCATAAATGTCTTCGGGACTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
71442012 GTATCATTCA
Statistics
Matches: 126, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 1 0.01
40 123 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAATACTA
Found at i:71450516 original size:147 final size:147
Alignment explanation
Indices: 71450249--71450540 Score: 566
Period size: 147 Copynumber: 2.0 Consensus size: 147
71450239 TTCATTTGAC
71450249 TTGATCCGTAGAAATCCCTAAGTTATATTATTATCTCTCTCGAGACTAATAACGTCTAACCCTAG
1 TTGATCCGTAGAAATCCCTAAGTTATATTATTATCTCTCTCGAGACTAATAACGTCTAACCCTAG
*
71450314 GTTGAATAATTGAAATCTCTTTCTAATTAACACCCTAGAATTACATTAACTCGATCTATGGATTC
66 GTTGAATAATTAAAATCTCTTTCTAATTAACACCCTAGAATTACATTAACTCGATCTATGGATTC
71450379 CCTTATTAGGTTTCATT
131 CCTTATTAGGTTTCATT
71450396 TTGATCCGTAGAAATCCCTAAGTTATATTATTATCTCTCTCGAGACTAATAACGTCTAACCCTAG
1 TTGATCCGTAGAAATCCCTAAGTTATATTATTATCTCTCTCGAGACTAATAACGTCTAACCCTAG
*
71450461 GTTGAATAATTAAAATCTCTTTCTAATTAACACCCTAGAATTGCATTAACTCGATCTATGGATTC
66 GTTGAATAATTAAAATCTCTTTCTAATTAACACCCTAGAATTACATTAACTCGATCTATGGATTC
71450526 CCTTATTAGGTTTCA
131 CCTTATTAGGTTTCA
71450541 CCCTCATCTG
Statistics
Matches: 143, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
147 143 1.00
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.37
Consensus pattern (147 bp):
TTGATCCGTAGAAATCCCTAAGTTATATTATTATCTCTCTCGAGACTAATAACGTCTAACCCTAG
GTTGAATAATTAAAATCTCTTTCTAATTAACACCCTAGAATTACATTAACTCGATCTATGGATTC
CCTTATTAGGTTTCATT
Found at i:71459092 original size:40 final size:40
Alignment explanation
Indices: 71459023--71459226 Score: 275
Period size: 40 Copynumber: 5.1 Consensus size: 40
71459013 CGGAATTTAA
* ** * *
71459023 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
* *
71459063 CCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
*
71459103 CCGGATAAAACAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
71459143 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
* * * * *
71459183 CCGGATATAATC-ACTAGCATAATTACCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAGC
71459223 CCGG
1 CCGG
71459227 GTATCATTCA
Statistics
Matches: 147, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 146 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:71473662 original size:3 final size:3
Alignment explanation
Indices: 71473656--71473745 Score: 171
Period size: 3 Copynumber: 29.7 Consensus size: 3
71473646 TATTATAGTG
71473656 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
71473702 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
71473746 ATTTATTAAA
Statistics
Matches: 86, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
3 83 0.97
4 3 0.03
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:71480035 original size:22 final size:20
Alignment explanation
Indices: 71479979--71480023 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
71479969 GTATCATTTT
* *
71479979 TATTATTATTAAT-TAATTA
1 TATTATAATTTATATAATTA
71479998 TATTATAATTTATATAATTA
1 TATTATAATTTATATAATTA
71480018 TATTAT
1 TATTAT
71480024 GAGATTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
TATTATAATTTATATAATTA
Found at i:71480440 original size:13 final size:13
Alignment explanation
Indices: 71480422--71480453 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
71480412 AATAGAGCAG
71480422 GAAAAAGAAAAAA
1 GAAAAAGAAAAAA
*
71480435 GAAAAAGAAAAAG
1 GAAAAAGAAAAAA
71480448 GAAAAA
1 GAAAAA
71480454 CTAAAGGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (13 bp):
GAAAAAGAAAAAA
Found at i:71481118 original size:16 final size:17
Alignment explanation
Indices: 71481094--71481137 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
71481084 AGTGTTATTG
71481094 TTGAATTGAATGA-GAA
1 TTGAATTGAATGATGAA
*
71481110 TTGAGTTGAATGATGAA
1 TTGAATTGAATGATGAA
*
71481127 TATGTATTGAA
1 T-TGAATTGAA
71481138 ATTGAATTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 12 0.52
17 4 0.17
18 7 0.30
ACGTcount: A:0.39, C:0.00, G:0.25, T:0.36
Consensus pattern (17 bp):
TTGAATTGAATGATGAA
Found at i:71484924 original size:37 final size:37
Alignment explanation
Indices: 71484874--71484951 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 37
71484864 TATAAAAGAA
*
71484874 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAACCTCCACACGTAGTCATCGG
71484911 GTCTTACCCGGTCATAACCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAACCTCCACACGTAGTCATCGG
71484948 GTCT
1 GTCT
71484952 CGCCCGGAAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.21, C:0.33, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGTCATAACCTCCACACGTAGTCATCGG
Found at i:71485114 original size:49 final size:49
Alignment explanation
Indices: 71485054--71485176 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
71485044 CATATATTTT
*
71485054 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
71485103 ACATCGGCCATTAGGCCTCATCACATATACGTACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
71485152 ACATCGGCCATTAGGCCTTATCACA
1 ACATCGGCCATTAGGCCTCATCACA
71485177 CATATATGTA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.27
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
Found at i:71488326 original size:40 final size:40
Alignment explanation
Indices: 71488282--71488380 Score: 103
Period size: 41 Copynumber: 2.4 Consensus size: 40
71488272 TCGATTGTTC
* * **
71488282 TCGGGACATAGCCCGG-TTATAGTGA-TTTGCACAATTGCCT
1 TCGGGA-ATAGCCCGGATT-TAGTAACTTAGCACAAACGCCT
71488322 TCGGGAATTAGCCCGGATTTAGTAACTTAGCACAAACGCCT
1 TCGGGAA-TAGCCCGGATTTAGTAACTTAGCACAAACGCCT
*
71488363 TCGGGATTTAGCCCGGAT
1 TCGGGA-ATAGCCCGGAT
71488381 ACCATTCGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 1 0.02
40 19 0.38
41 30 0.60
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.27
Consensus pattern (40 bp):
TCGGGAATAGCCCGGATTTAGTAACTTAGCACAAACGCCT
Found at i:71488901 original size:29 final size:29
Alignment explanation
Indices: 71488864--71489202 Score: 608
Period size: 29 Copynumber: 11.7 Consensus size: 29
71488854 TGTTGAAAAA
*
71488864 CTCGTACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
71488893 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
71488922 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
71488951 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
71488980 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
71489009 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
71489038 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
71489067 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
71489096 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
71489125 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* * *
71489154 CTCGCACACATAGTGCCTCGGTTAACGGAAT
1 CTCGCACACACAGTGCCTCGATT-ACTG-AT
*
71489185 -TTGCACACACAGTGCCTC
1 CTCGCACACACAGTGCCTC
71489203 TAATCATTCG
Statistics
Matches: 302, Mismatches: 6, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
29 281 0.93
30 19 0.06
31 2 0.01
ACGTcount: A:0.24, C:0.34, G:0.18, T:0.24
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCGATTACTGAT
Found at i:71491267 original size:37 final size:37
Alignment explanation
Indices: 71491217--71491294 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 37
71491207 TATAAAAGAA
*
71491217 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAACCTCCACACGTAGTCATCGG
71491254 GTCTTACCCGGTCATAACCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAACCTCCACACGTAGTCATCGG
71491291 GTCT
1 GTCT
71491295 CGCCCGGAAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.21, C:0.33, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGTCATAACCTCCACACGTAGTCATCGG
Found at i:71491457 original size:49 final size:49
Alignment explanation
Indices: 71491397--71491519 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
71491387 CATATATTTT
*
71491397 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
71491446 ACATCGGCCATTAGGCCTCATCACATATACGTACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
71491495 ACATCGGCCATTAGGCCTTATCACA
1 ACATCGGCCATTAGGCCTCATCACA
71491520 CATATATGTA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.27
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
Found at i:71506190 original size:18 final size:21
Alignment explanation
Indices: 71506167--71506207 Score: 61
Period size: 18 Copynumber: 2.1 Consensus size: 21
71506157 CACTCAATTT
71506167 AAGAAGAA-AT-TTG-AAAAA
1 AAGAAGAAGATATTGTAAAAA
71506185 AAGAAGAAGATATTGTAAAAA
1 AAGAAGAAGATATTGTAAAAA
71506206 AA
1 AA
71506208 AAATGTCTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 8 0.40
19 2 0.10
20 3 0.15
21 7 0.35
ACGTcount: A:0.66, C:0.00, G:0.17, T:0.17
Consensus pattern (21 bp):
AAGAAGAAGATATTGTAAAAA
Done.