Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 251 of 444
Found at i:71506191 original size:21 final size:22
Alignment explanation
Indices: 71506167--71506208 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
71506157 CACTCAATTT
*
71506167 AAGAAGAAATT-TGAAAAAAAG
1 AAGAAGAAATTGTAAAAAAAAG
*
71506188 AAGAAGATATTGTAAAAAAAA
1 AAGAAGAAATTGTAAAAAAAA
71506209 AATGTCTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.17
Consensus pattern (22 bp):
AAGAAGAAATTGTAAAAAAAAG
Found at i:71506280 original size:3 final size:3
Alignment explanation
Indices: 71506272--71506296 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
71506262 ATTTATTTGC
71506272 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
71506297 GACTTTCTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:71507913 original size:17 final size:18
Alignment explanation
Indices: 71507891--71507931 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
71507881 TCATAAAAAA
71507891 TTTTAAGAAAACAAT-AT
1 TTTTAAGAAAACAATAAT
* *
71507908 TTTTAAGATAATAATAAT
1 TTTTAAGAAAACAATAAT
71507926 TTTTAA
1 TTTTAA
71507932 AAGGAAAGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (18 bp):
TTTTAAGAAAACAATAAT
Found at i:71508235 original size:12 final size:11
Alignment explanation
Indices: 71508197--71508227 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
71508187 TTGATGTAAT
71508197 AAATTTATAAA
1 AAATTTATAAA
71508208 AAATTTATAAA
1 AAATTTATAAA
71508219 AAATTTATA
1 AAATTTATA
71508228 TGAAAATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (11 bp):
AAATTTATAAA
Found at i:71508838 original size:26 final size:26
Alignment explanation
Indices: 71508771--71508842 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 26
71508761 TCTCATACCT
71508771 ATTTTA-CCCTCAATAAAA-TTTGACG
1 ATTTTACCCCT-AATAAAATTTTGACG
* **
71508796 ATTTTACCCATGGTAAAATTTTGACG
1 ATTTTACCCCTAATAAAATTTTGACG
71508822 ATTTTACCCCTAATAAAATTT
1 ATTTTACCCCTAATAAAATTT
71508843 CGAGAAAATA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
25 11 0.28
26 28 0.72
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.39
Consensus pattern (26 bp):
ATTTTACCCCTAATAAAATTTTGACG
Found at i:71512662 original size:25 final size:25
Alignment explanation
Indices: 71512634--71512682 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
71512624 GCTTGAACTT
*
71512634 CTCGA-TATATGGCTATTCGGAGCTC
1 CTCGATTA-ATGGCTATTCGAAGCTC
*
71512659 CTCGATTAATGGCTCTTCGAAGCT
1 CTCGATTAATGGCTATTCGAAGCT
71512683 ACCCATTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.33
Consensus pattern (25 bp):
CTCGATTAATGGCTATTCGAAGCTC
Found at i:71522020 original size:28 final size:30
Alignment explanation
Indices: 71521989--71522046 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 30
71521979 GACCTATAAA
*
71521989 TTACATTTTA-CCAATTT-TCCTTAAATTT
1 TTACACTTTATCCAATTTATCCTTAAATTT
*
71522017 TTACACTTTATTCAATTTAGTCCTTAAATT
1 TTACACTTTATCCAATTTA-TCCTTAAATT
71522047 GAAACTACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 9 0.36
29 6 0.24
31 10 0.40
ACGTcount: A:0.29, C:0.17, G:0.02, T:0.52
Consensus pattern (30 bp):
TTACACTTTATCCAATTTATCCTTAAATTT
Found at i:71524487 original size:2 final size:2
Alignment explanation
Indices: 71524480--71524510 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
71524470 AATCTATAAA
71524480 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
71524511 AGAAAATGAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:71530987 original size:13 final size:13
Alignment explanation
Indices: 71530969--71530995 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
71530959 CCAATATTAT
71530969 TGGTATTAGTACC
1 TGGTATTAGTACC
71530982 TGGTATTAGTACC
1 TGGTATTAGTACC
71530995 T
1 T
71530996 ATAATCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.15, G:0.22, T:0.41
Consensus pattern (13 bp):
TGGTATTAGTACC
Found at i:71531503 original size:15 final size:15
Alignment explanation
Indices: 71531483--71531512 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
71531473 AATTGTTGTA
71531483 TCTGAACATATCTTT
1 TCTGAACATATCTTT
71531498 TCTGAACATATCTTT
1 TCTGAACATATCTTT
71531513 CCTTTTTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.20, G:0.07, T:0.47
Consensus pattern (15 bp):
TCTGAACATATCTTT
Found at i:71533304 original size:2 final size:2
Alignment explanation
Indices: 71533299--71533361 Score: 117
Period size: 2 Copynumber: 31.0 Consensus size: 2
71533289 AGCTTTCTTT
71533299 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
71533341 TA TA TA TA TA TA TA TA CTA TA
1 TA TA TA TA TA TA TA TA -TA TA
71533362 AAGTCAATTT
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 58 0.97
3 2 0.03
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:71534271 original size:23 final size:23
Alignment explanation
Indices: 71534245--71534296 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
71534235 GCCTTTGCAA
71534245 CATATTCTGAGGAGCCTTTT-TGG
1 CATATTCTGAGGAG-CTTTTGTGG
*
71534268 CATATTCTGTGGAGCTTTTGTGG
1 CATATTCTGAGGAGCTTTTGTGG
71534291 CATATT
1 CATATT
71534297 TTGTAATGCC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 5 0.19
23 22 0.81
ACGTcount: A:0.17, C:0.15, G:0.25, T:0.42
Consensus pattern (23 bp):
CATATTCTGAGGAGCTTTTGTGG
Found at i:71536090 original size:42 final size:41
Alignment explanation
Indices: 71536043--71536196 Score: 159
Period size: 42 Copynumber: 3.7 Consensus size: 41
71536033 TACCATACCA
*
71536043 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACAAG-AATCTCATATCG
* * * *
71536085 ATGCCAATAGCCTA-ACTATGGTCTTACACAAAATCTCATATTG
1 ATGCC-ATATCCCAGA-TATGGTCTTACA-AGAATCTCATATCG
* * *
71536128 GTGCCAAATCTCAGATATGGTCTTACAAGAAGTCTCATA-CTG
1 ATGCCATATCCCAGATATGGTCTTACAAGAA-TCTCATATC-G
*
71536170 ATGTCATATCCCAGATATGGTCTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
71536197 CATAAACTTA
Statistics
Matches: 90, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
41 3 0.03
42 53 0.59
43 34 0.38
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACAAGAATCTCATATCG
Found at i:71542189 original size:25 final size:26
Alignment explanation
Indices: 71542139--71542194 Score: 80
Period size: 25 Copynumber: 2.2 Consensus size: 26
71542129 TGCTCTTTCA
*
71542139 AGCT-ATGAACAGTAAGCTCCTCTTG
1 AGCTGATGAACAGTAAGCTCCTATTG
*
71542164 AGCTGATGGACAGTAAGCT-CTATTG
1 AGCTGATGAACAGTAAGCTCCTATTG
71542189 AGCTGA
1 AGCTGA
71542195 AATGATAAGC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 15 0.54
26 13 0.46
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
AGCTGATGAACAGTAAGCTCCTATTG
Found at i:71543537 original size:25 final size:25
Alignment explanation
Indices: 71543463--71543540 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
71543453 CTCGGCCCTG
71543463 TCACATATATACACCTTCACATTCA
1 TCACATATATACACCTTCACATTCA
** *
71543488 TCACAT-T-GGCTA--TTCAGCCTT-A
1 TCACATATATAC-ACCTTCA-CATTCA
71543510 TCACATATATACACCTTCACATTCA
1 TCACATATATACACCTTCACATTCA
71543535 TCACAT
1 TCACAT
71543541 CTGCCATTAG
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 11 0.28
23 6 0.15
24 6 0.15
25 17 0.43
ACGTcount: A:0.32, C:0.31, G:0.04, T:0.33
Consensus pattern (25 bp):
TCACATATATACACCTTCACATTCA
Found at i:71543586 original size:49 final size:47
Alignment explanation
Indices: 71543412--71543728 Score: 433
Period size: 47 Copynumber: 6.7 Consensus size: 47
71543402 CCCTTCGGGA
* * * * * *
71543412 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
* * *
71543459 CCTGTCACATATATACACCTTCACATTCATCACATTGGCTATTCA-GC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATT-AGGC
71543506 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTAGGC
* *
71543553 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACCTTCACATTCATCACATTGGCCATTAGGC
71543602 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATT-AGGC
*
71543651 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
*
71543698 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
71543729 GCGTAAAATC
Statistics
Matches: 242, Mismatches: 18, Indels: 20
0.86 0.06 0.07
Matches are distributed among these distances:
46 2 0.01
47 150 0.62
48 2 0.01
49 87 0.36
50 1 0.00
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
Found at i:71543609 original size:96 final size:94
Alignment explanation
Indices: 71543412--71543728 Score: 442
Period size: 96 Copynumber: 3.3 Consensus size: 94
71543402 CCCTTCGGGA
* * * * * * * *
71543412 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
* *
71543477 CTTCACATTCATCACATTGGCTATTCA-GC
66 CTTCACATTCATCACATCGGCCATT-AGGC
71543506 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGCCTTATCACATATATATA
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTAGGCCTTATCAC--ATATATA
*
71543570 CACTTTCACATTCATCACATCGGCCATTAGGC
63 CACCTTCACATTCATCACATCGGCCATTAGGC
71543602 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCA-GCCTTATCACATATATA
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATT-AGGCCTTATCACATATATA
71543666 CACCTTCACATTCATCACATCGGCCATTAGGC
63 CACCTTCACATTCATCACATCGGCCATTAGGC
*
71543698 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
71543729 GCGTAAAATC
Statistics
Matches: 202, Mismatches: 13, Indels: 16
0.87 0.06 0.07
Matches are distributed among these distances:
94 57 0.28
95 2 0.01
96 108 0.53
97 2 0.01
98 32 0.16
99 1 0.00
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
CTTCACATTCATCACATCGGCCATTAGGC
Found at i:71547529 original size:43 final size:43
Alignment explanation
Indices: 71547468--71547774 Score: 533
Period size: 43 Copynumber: 7.1 Consensus size: 43
71547458 CCTTGCTCGA
** * *
71547468 ATCACCGGCATTAAGCCTGCTAAGCACGAAGACCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
71547511 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
71547554 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
71547597 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
71547640 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
71547683 ATCACTGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
71547726 ATCACTGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
71547769 ATCACC
1 ATCACC
71547775 AGCATGACTG
Statistics
Matches: 256, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 256 1.00
ACGTcount: A:0.32, C:0.32, G:0.22, T:0.14
Consensus pattern (43 bp):
ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
Found at i:71547948 original size:42 final size:42
Alignment explanation
Indices: 71547757--71547968 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 42
71547747 AGGCACGAAG
* * * * * * *
71547757 GCCCGAATACATATCACCAGCATGACTGCTCTTCGGAACCTG
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* * * * *
71547799 GTCCGG--ATACATCACTAGCATGAATGCTCTTCGGGATTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* * *
71547839 GCCCGG--ATATATCACTAGCATGAATGCTCTTCGGGATTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* *
71547879 GCCCGGATGTA-A-CACCAGCACGAATGCTCTACGGGACTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* *
71547919 ACCCGGATATATATCGCCAGCACGAATGCTCTTCGGGACTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
71547961 GCCCGGAT
1 GCCCGGAT
71547969 CATCGTCGAG
Statistics
Matches: 144, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
40 103 0.72
41 2 0.01
42 39 0.27
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (42 bp):
GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
Found at i:71550020 original size:25 final size:25
Alignment explanation
Indices: 71549946--71550023 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
71549936 CTCGGCCCTG
71549946 TCACATATATACACCTTCACATTCA
1 TCACATATATACACCTTCACATTCA
** *
71549971 TCACAT-T-GGCTA--TTCAGCCTT-A
1 TCACATATATAC-ACCTTCA-CATTCA
71549993 TCACATATATACACCTTCACATTCA
1 TCACATATATACACCTTCACATTCA
71550018 TCACAT
1 TCACAT
71550024 CTGCCATTAG
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 11 0.28
23 6 0.15
24 6 0.15
25 17 0.43
ACGTcount: A:0.32, C:0.31, G:0.04, T:0.33
Consensus pattern (25 bp):
TCACATATATACACCTTCACATTCA
Found at i:71550069 original size:49 final size:47
Alignment explanation
Indices: 71549895--71550211 Score: 433
Period size: 47 Copynumber: 6.7 Consensus size: 47
71549885 CCCTTCGGGA
* * * * * *
71549895 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
* * *
71549942 CCTGTCACATATATACACCTTCACATTCATCACATTGGCTATTCA-GC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATT-AGGC
71549989 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTAGGC
* *
71550036 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACCTTCACATTCATCACATTGGCCATTAGGC
71550085 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATT-AGGC
*
71550134 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
*
71550181 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
71550212 GCGTAAAATC
Statistics
Matches: 242, Mismatches: 18, Indels: 20
0.86 0.06 0.07
Matches are distributed among these distances:
46 2 0.01
47 150 0.62
48 2 0.01
49 87 0.36
50 1 0.00
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
Found at i:71550092 original size:96 final size:94
Alignment explanation
Indices: 71549895--71550211 Score: 442
Period size: 96 Copynumber: 3.3 Consensus size: 94
71549885 CCCTTCGGGA
* * * * * * * *
71549895 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
* *
71549960 CTTCACATTCATCACATTGGCTATTCA-GC
66 CTTCACATTCATCACATCGGCCATT-AGGC
71549989 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGCCTTATCACATATATATA
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTAGGCCTTATCAC--ATATATA
*
71550053 CACTTTCACATTCATCACATCGGCCATTAGGC
63 CACCTTCACATTCATCACATCGGCCATTAGGC
71550085 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCA-GCCTTATCACATATATA
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATT-AGGCCTTATCACATATATA
71550149 CACCTTCACATTCATCACATCGGCCATTAGGC
63 CACCTTCACATTCATCACATCGGCCATTAGGC
*
71550181 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
71550212 GCGTAAAATC
Statistics
Matches: 202, Mismatches: 13, Indels: 16
0.87 0.06 0.07
Matches are distributed among these distances:
94 57 0.28
95 2 0.01
96 108 0.53
97 2 0.01
98 32 0.16
99 1 0.00
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
CTTCACATTCATCACATCGGCCATTAGGC
Found at i:71556500 original size:15 final size:16
Alignment explanation
Indices: 71556480--71556509 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
71556470 AAGATCTTAT
71556480 AATCATAA-CTTACTC
1 AATCATAACCTTACTC
71556495 AATCATAACCTTACT
1 AATCATAACCTTACT
71556510 AAGGGTTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (16 bp):
AATCATAACCTTACTC
Found at i:71556727 original size:42 final size:41
Alignment explanation
Indices: 71556680--71556834 Score: 168
Period size: 42 Copynumber: 3.7 Consensus size: 41
71556670 TACCATACCA
71556680 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACATG-AATCTCATATTG
* * **
71556722 ATGCCAATAGCCTA-ACTATGGTCTTACACAAAATCTCATATTG
1 ATGCC-ATATCCCAGA-TATGGTCTTACA-TGAATCTCATATTG
* * * * *
71556765 GTGCCAAATCCCAAATATGGTCTTACAAGAAGTCTCATACTG
1 ATGCCATATCCCAGATATGGTCTTACATGAA-TCTCATATTG
*
71556807 ATGTCATATCCCAGATATGGTCTTACAT
1 ATGCCATATCCCAGATATGGTCTTACAT
71556835 ATAAACTTAG
Statistics
Matches: 93, Mismatches: 15, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
41 3 0.03
42 55 0.59
43 35 0.38
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.32
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACATGAATCTCATATTG
Found at i:71565203 original size:71 final size:71
Alignment explanation
Indices: 71565040--71565203 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
71565030 GAGATGTATC
*
71565040 CCATGTAGACAAGAGAGCTACATGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
71565105 AGGACA
66 AGGACA
71565111 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
71565176 AGGACA
66 AGGACA
71565182 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
71565204 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:71568989 original size:27 final size:28
Alignment explanation
Indices: 71568957--71569011 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
71568947 AAATAAAAAC
*
71568957 TCTTAAAT-AAATAGTGGTAAAATACTA
1 TCTTAAATAAAATAATGGTAAAATACTA
71568984 TCTTAAATAAAATAATGGTAAAATACTA
1 TCTTAAATAAAATAATGGTAAAATACTA
71569012 AGCAATTCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 8 0.31
28 18 0.69
ACGTcount: A:0.51, C:0.07, G:0.09, T:0.33
Consensus pattern (28 bp):
TCTTAAATAAAATAATGGTAAAATACTA
Found at i:71574738 original size:40 final size:39
Alignment explanation
Indices: 71574693--71574899 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
71574683 CGGAATACAA
*
71574693 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
71574733 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
71574773 CCGGATTTAA-CACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
71574812 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
71574852 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
71574892 CCGGATAT
1 CCGGATAT
71574900 CATTCAATTG
Statistics
Matches: 141, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 37 0.26
40 101 0.72
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:71574811 original size:79 final size:79
Alignment explanation
Indices: 71574693--71574898 Score: 236
Period size: 79 Copynumber: 2.6 Consensus size: 79
71574683 CGGAATACAA
* *
71574693 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAC-ACTAGCAC-AATG
*
71574757 GCCTTCGGGTATTAGC
64 GCCTTCGGGTATTAAC
* * **
71574773 CCGGATTTAA-CACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCACAATGG
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACACTAGCACAATGG
*
71574837 CCTTCGGGTCTTAAC
65 CCTTCGGGTATTAAC
** * ** * *
71574852 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
71574899 TCATTCAATT
Statistics
Matches: 107, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
78 3 0.03
79 64 0.60
80 40 0.37
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (79 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACACTAGCACAATGGC
CTTCGGGTATTAAC
Found at i:71591016 original size:2 final size:2
Alignment explanation
Indices: 71591004--71591035 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
71590994 AGATGTTAAT
*
71591004 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
71591036 CATGTACATG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:71598423 original size:21 final size:20
Alignment explanation
Indices: 71598395--71598433 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
71598385 CAAAACTTGT
71598395 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
71598415 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
71598434 CAAAATACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:71600754 original size:42 final size:42
Alignment explanation
Indices: 71600692--71600775 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
71600682 GCCATAGTCC
*
71600692 AACTACGGTTTTACACATTCGTCGCCAAGGCCCTACCATGGT
1 AACTACGGTTTTACAAATTCGTCGCCAAGGCCCTACCATGGT
*
71600734 AACTATGGTTTTACAAATTCGTCGCCAAGGCCCTACCATGGT
1 AACTACGGTTTTACAAATTCGTCGCCAAGGCCCTACCATGGT
71600776 CTTACATTCG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (42 bp):
AACTACGGTTTTACAAATTCGTCGCCAAGGCCCTACCATGGT
Found at i:71601102 original size:12 final size:13
Alignment explanation
Indices: 71601077--71601106 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
71601067 AAGTAATCAA
71601077 AATCAACTTATTT
1 AATCAACTTATTT
71601090 AATCAAC-TATTT
1 AATCAACTTATTT
71601102 AATCA
1 AATCA
71601107 CTTTAGTCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (13 bp):
AATCAACTTATTT
Found at i:71610334 original size:21 final size:21
Alignment explanation
Indices: 71610295--71610334 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
71610285 ACACGGTGTT
* *
71610295 GAGGAAACAATGTGGGAACTA
1 GAGGAAACAATGAGAGAACTA
*
71610316 GAGGATACAATGAGAGAAC
1 GAGGAAACAATGAGAGAAC
71610335 ACTATCCGAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.10, G:0.33, T:0.12
Consensus pattern (21 bp):
GAGGAAACAATGAGAGAACTA
Found at i:71617510 original size:44 final size:46
Alignment explanation
Indices: 71617457--71617556 Score: 134
Period size: 46 Copynumber: 2.2 Consensus size: 46
71617447 ATGTCCCATG
*
71617457 GTCTTACACT-GA-CACATCTC-ATAGCCGATGCATGTCCCAGACAT
1 GTCTTACACTGGATCACATCCCGA-AGCCGATGCATGTCCCAGACAT
* * *
71617501 GTCTTACACTGGATTACGTCCCGAGGCCGATGCATGTCCCAGACAT
1 GTCTTACACTGGATCACATCCCGAAGCCGATGCATGTCCCAGACAT
71617547 GTCTTACACT
1 GTCTTACACT
71617557 AGCACTCGTC
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
44 10 0.20
45 2 0.04
46 36 0.73
47 1 0.02
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (46 bp):
GTCTTACACTGGATCACATCCCGAAGCCGATGCATGTCCCAGACAT
Found at i:71617579 original size:46 final size:46
Alignment explanation
Indices: 71617480--71617653 Score: 151
Period size: 46 Copynumber: 3.7 Consensus size: 46
71617470 ACATCTCATA
* * * * *
71617480 GCCGATGCATGTCCCAGACATGTCTTACACT-GGATTACGTCCCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCAAT
71617526 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAAT
* * * *
71617572 GCTGATGCCATGTCCCAAAAATGGTCTTACATTAG--CTC-TCAT-AATGT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGTC-TCAA--T
* *
71617619 GGCCGATGCATGTCCCAGACATGTCATACAGTAGC
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGC
71617654 TCACACAAAT
Statistics
Matches: 106, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
45 4 0.04
46 57 0.54
47 28 0.26
48 17 0.16
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.26
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAAT
Found at i:71620879 original size:13 final size:13
Alignment explanation
Indices: 71620861--71620885 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71620851 ATTCAAATTT
71620861 ATTATTAGGATAC
1 ATTATTAGGATAC
71620874 ATTATTAGGATA
1 ATTATTAGGATA
71620886 GGATAATCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.40
Consensus pattern (13 bp):
ATTATTAGGATAC
Found at i:71623012 original size:27 final size:27
Alignment explanation
Indices: 71622913--71623020 Score: 112
Period size: 28 Copynumber: 4.0 Consensus size: 27
71622903 GCTGCCAGTA
* * *
71622913 CAGATA-TTGTGACAGAGTCACCAAAT
1 CAGATATTTGTGGCAGAGCCACCAGAT
* *
71622939 ACAGATAATTGTGGCAGAGCCACCAGAAA
1 -CAGATATTTGTGGCAGAGCCACCAG-AT
*
71622968 CAGATATTTAT-GCTAGAGCCACCAGAT
1 CAGATATTTGTGGC-AGAGCCACCAGAT
*
71622995 CAGGTATTTGTGGCAGAGCCACCAGA
1 CAGATATTTGTGGCAGAGCCACCAGA
71623021 ACACTTCCTC
Statistics
Matches: 68, Mismatches: 9, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
27 30 0.44
28 37 0.54
29 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.20
Consensus pattern (27 bp):
CAGATATTTGTGGCAGAGCCACCAGAT
Found at i:71623183 original size:26 final size:26
Alignment explanation
Indices: 71623129--71623186 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
71623119 TCAACCCTAG
* *
71623129 GGGTATAATGGTCATTTTGCACCTAA
1 GGGTATAATGGTAATTTTGCAACTAA
*
71623155 GGGTATAATGGTAATTTT-CATACTTA
1 GGGTATAATGGTAATTTTGCA-ACTAA
71623181 GGGTAT
1 GGGTAT
71623187 TTTAGTAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 2 0.07
26 26 0.93
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.38
Consensus pattern (26 bp):
GGGTATAATGGTAATTTTGCAACTAA
Found at i:71624124 original size:17 final size:17
Alignment explanation
Indices: 71624099--71624131 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
71624089 TCAGATATGG
71624099 AGAAAAGAAAAGATGAA
1 AGAAAAGAAAAGATGAA
*
71624116 AGAAGAGAAAAGATGA
1 AGAAAAGAAAAGATGA
71624132 GAAGGGAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.27, T:0.06
Consensus pattern (17 bp):
AGAAAAGAAAAGATGAA
Found at i:71626192 original size:21 final size:21
Alignment explanation
Indices: 71626117--71626182 Score: 78
Period size: 25 Copynumber: 3.0 Consensus size: 21
71626107 GTCTTGAATT
71626117 TGTTAGATATTGAATTTATTA
1 TGTTAGATATTGAATTTATTA
* *
71626138 TGTTTTAAGCTTGTTGAATTTATTA
1 TG--TT-AG-ATATTGAATTTATTA
71626163 TGTTAGATATTGAATTTATT
1 TGTTAGATATTGAATTTATT
71626183 TGCTTGGATA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
21 14 0.38
22 2 0.05
23 4 0.11
24 2 0.05
25 15 0.41
ACGTcount: A:0.29, C:0.02, G:0.15, T:0.55
Consensus pattern (21 bp):
TGTTAGATATTGAATTTATTA
Found at i:71627350 original size:28 final size:29
Alignment explanation
Indices: 71627318--71627377 Score: 95
Period size: 28 Copynumber: 2.1 Consensus size: 29
71627308 TTTGATTTAG
* *
71627318 AAAACAATTTAAAGTATAAATTTAT-TAA
1 AAAACAATTTAAAATATAAATATATGTAA
71627346 AAAACAATTTAAAATATAAATATATGTAA
1 AAAACAATTTAAAATATAAATATATGTAA
71627375 AAA
1 AAA
71627378 CAACTTTTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 23 0.79
29 6 0.21
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (29 bp):
AAAACAATTTAAAATATAAATATATGTAA
Found at i:71627497 original size:14 final size:14
Alignment explanation
Indices: 71627460--71627490 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
71627450 CTAGAAAAGT
71627460 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
71627474 AAATCATTTTCCGG
1 AAATCATTTTCCAG
71627488 AAA
1 AAA
71627491 ATATTTTACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:71631275 original size:29 final size:29
Alignment explanation
Indices: 71631240--71631369 Score: 206
Period size: 29 Copynumber: 4.5 Consensus size: 29
71631230 ATAAACGATC
*** *
71631240 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
71631269 TCGCACACATAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
71631298 TTGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
71631327 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
71631356 TCGCACACTTAGTG
1 TCGCACACTTAGTG
71631370 TCAATCTTGT
Statistics
Matches: 93, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 93 1.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.32
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATAATTTAAGT
Found at i:71639143 original size:29 final size:29
Alignment explanation
Indices: 71639108--71639240 Score: 212
Period size: 29 Copynumber: 4.6 Consensus size: 29
71639098 ATAAACGATC
*** *
71639108 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
71639137 TCGCACACATAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
71639166 TTGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
71639195 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
71639224 TCGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
71639241 ATCTTGTCAC
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 96 1.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATAATTTAAGT
Found at i:71641093 original size:40 final size:39
Alignment explanation
Indices: 71641029--71641216 Score: 223
Period size: 39 Copynumber: 4.8 Consensus size: 39
71641019 GCTACTCGTT
* * * ** *
71641029 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* * *
71641069 CAAAGGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
*
71641109 CAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * * *
71641148 CAATTGCCTTCGGGCTTAGCCCGGATATCACAATTTGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
*
71641187 CAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCA
71641217 CTCGAACATT
Statistics
Matches: 133, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 89 0.67
40 44 0.33
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:71641144 original size:39 final size:39
Alignment explanation
Indices: 71641065--71641217 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
71641055 TATGGTAACC
** *
71641065 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
71641105 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
71641144 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
71641183 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
71641218 TCGAACATTC
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 90 0.85
40 16 0.15
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:71641193 original size:78 final size:79
Alignment explanation
Indices: 71641034--71641216 Score: 260
Period size: 78 Copynumber: 2.3 Consensus size: 79
71641024 TCGTTCAAAC
* * **
71641034 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
71641099 ACAACTCGCACAATT
65 ACAACTCGCACAATT
* ** *
71641114 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
* *
71641178 CAATTTGCACAATT
66 CAACTCGCACAATT
71641192 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
71641217 CTCGAACATT
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
78 52 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.23
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAACTCGCACAATT
Found at i:71647904 original size:46 final size:46
Alignment explanation
Indices: 71647853--71648023 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
71647843 CTCGTAGCCA
* *
71647853 ATGCATGTCTCAGACATGTCTTACACTGGCTTACATCCTGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTTACATCCTGAGGCCG
* * * **
71647899 ATGCATGTCCCAGACATGTCTTACACTAGC--ACTTCTCTCAATGCTA
1 ATGCATGTCCCAGACATGTCTTACACTAGCTTACATC-CT-GAGGCCG
** *
71647945 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAATGTGGCCG
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TACATCCTGAGGCCG
*
71647993 ATGCATGTCCTAGACATGTCTTACACTAGCT
1 ATGCATGTCCCAGACATGTCTTACACTAGCT
71648024 CACAGAAATG
Statistics
Matches: 102, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
44 4 0.04
45 2 0.02
46 48 0.47
47 27 0.26
48 18 0.18
49 1 0.01
50 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTTACATCCTGAGGCCG
Found at i:71647968 original size:94 final size:92
Alignment explanation
Indices: 71647852--71648022 Score: 254
Period size: 94 Copynumber: 1.8 Consensus size: 92
71647842 TCTCGTAGCC
* * **
71647852 AATGCATGTCTCAGACATGTCTTACACTGGCT-TACATCCTGAGGCCGATGCATGTCCCAGACAT
1 AATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATAATGAGGCCGATGCATGTCCCAGACAT
71647916 GTCTTACACTAGCACTTCTCTCAATGCT
65 GTCTTACACTAGCACTTCTCTCAATGCT
* *
71647944 AATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCATGTCCTAGACA
1 AATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGAGGCCGATGCATGTCCCAGACA
71648009 TGTCTTACACTAGC
64 TGTCTTACACTAGC
71648023 TCACAGAAAT
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
92 4 0.06
93 13 0.19
94 52 0.74
95 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (92 bp):
AATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATGAGGCCGATGCATGTCCCAGACATG
TCTTACACTAGCACTTCTCTCAATGCT
Found at i:71655410 original size:25 final size:24
Alignment explanation
Indices: 71655356--71655417 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
71655346 AGATTCAGTT
* *
71655356 TTTTCTTCTTCTTTTTCTTCTTTTC
1 TTTTCTT-TTCTTTTTCTTCTCTAC
71655381 TTTTCTTTTCTTTTCTCTTCATCTAC
1 TTTTCTTTTCTTTT-TCTTC-TCTAC
71655407 -TTTCTTTTCTT
1 TTTTCTTTTCTT
71655418 CTTTTCCTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 7 0.21
25 23 0.70
26 3 0.09
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.73
Consensus pattern (24 bp):
TTTTCTTTTCTTTTTCTTCTCTAC
Found at i:71655415 original size:5 final size:5
Alignment explanation
Indices: 71655356--71655396 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
71655346 AGATTCAGTT
*
71655356 TTTTC TTCTTC TTTT- TCTTC TTTTC TTTTC TTTTC TTTTC T
1 TTTTC TT-TTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC T
71655397 CTTCATCTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
4 3 0.09
5 24 0.75
6 5 0.16
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTC
Found at i:71660097 original size:42 final size:42
Alignment explanation
Indices: 71659991--71660104 Score: 122
Period size: 43 Copynumber: 2.7 Consensus size: 42
71659981 CGTACCAATG
* * * * *
71659991 CCATATCCCAGATATGGTCATACATGTAATCTCATATCGATT
1 CCATATCCCAGATATGGTCTTATACGTAATCCCATATCGATA
* * **
71660033 CCAATAGCCCAGCTATTATCTTATACG-AAGTCCCATATCGATA
1 CC-ATATCCCAGATATGGTCTTATACGTAA-TCCCATATCGATA
71660076 CCATATCCCAGATATGGTCTTATACGTAA
1 CCATATCCCAGATATGGTCTTATACGTAA
71660105 ATCTCAGTAA
Statistics
Matches: 56, Mismatches: 13, Indels: 5
0.76 0.18 0.07
Matches are distributed among these distances:
42 24 0.43
43 32 0.57
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.31
Consensus pattern (42 bp):
CCATATCCCAGATATGGTCTTATACGTAATCCCATATCGATA
Found at i:71660447 original size:17 final size:16
Alignment explanation
Indices: 71660414--71660444 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
71660404 CAATTCAACC
71660414 CAAAAATTACATTTTG
1 CAAAAATTACATTTTG
71660430 CAAAAATTACATTTT
1 CAAAAATTACATTTT
71660445 TGCCCTCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.13, G:0.03, T:0.39
Consensus pattern (16 bp):
CAAAAATTACATTTTG
Found at i:71666896 original size:54 final size:55
Alignment explanation
Indices: 71666834--71666947 Score: 212
Period size: 54 Copynumber: 2.1 Consensus size: 55
71666824 CGTAGCTATG
71666834 GTTCTTTTTTAACCGTTTCTATCTAATCAGCGTTGTTAGGGAAGCAGTGACG-TA
1 GTTCTTTTTTAACCGTTTCTATCTAATCAGCGTTGTTAGGGAAGCAGTGACGTTA
*
71666888 GTTCTTTTTTAACCGTTTCTATCTAATCAGCGTTGTTAGGGAAGCGGTGACGTTA
1 GTTCTTTTTTAACCGTTTCTATCTAATCAGCGTTGTTAGGGAAGCAGTGACGTTA
71666943 GTTCT
1 GTTCT
71666948 GCCTCGTCGT
Statistics
Matches: 58, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
54 51 0.88
55 7 0.12
ACGTcount: A:0.20, C:0.17, G:0.23, T:0.40
Consensus pattern (55 bp):
GTTCTTTTTTAACCGTTTCTATCTAATCAGCGTTGTTAGGGAAGCAGTGACGTTA
Found at i:71667877 original size:27 final size:27
Alignment explanation
Indices: 71667837--71667892 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
71667827 TGGAGGAAGC
71667837 ATACTGATACTGGTGGCTTTGCCACAT
1 ATACTGATACTGGTGGCTTTGCCACAT
* *
71667864 ATACTGTTATTGGTGGCTTTGCCACAT
1 ATACTGATACTGGTGGCTTTGCCACAT
71667891 AT
1 AT
71667893 CTATTGATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (27 bp):
ATACTGATACTGGTGGCTTTGCCACAT
Found at i:71674269 original size:19 final size:20
Alignment explanation
Indices: 71674245--71674283 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
71674235 CTCAAGTTTC
71674245 AGTTA-TTTGGGAAATTTTA
1 AGTTATTTTGGGAAATTTTA
71674264 AGTTATTTTGGGAAATTTTA
1 AGTTATTTTGGGAAATTTTA
71674284 TGTAATAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.49
Consensus pattern (20 bp):
AGTTATTTTGGGAAATTTTA
Found at i:71676176 original size:30 final size:28
Alignment explanation
Indices: 71676140--71676240 Score: 130
Period size: 28 Copynumber: 3.5 Consensus size: 28
71676130 GACAAGATTG
* * *
71676140 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATATA
*
71676170 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATATA
*
71676198 GCACTAAGTGTGCGAGTTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTAAT-TATATA
71676227 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
71676241 GATTCACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
28 26 0.41
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATATA
Found at i:71684088 original size:30 final size:28
Alignment explanation
Indices: 71684052--71684152 Score: 130
Period size: 28 Copynumber: 3.5 Consensus size: 28
71684042 GACAAGATTG
* * *
71684052 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATATA
*
71684082 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATATA
*
71684110 GCACTAAGTGTGCGAGTTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTAAT-TATATA
71684139 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
71684153 GATTCACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
28 26 0.41
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATATA
Found at i:71691998 original size:30 final size:28
Alignment explanation
Indices: 71691962--71692062 Score: 130
Period size: 28 Copynumber: 3.5 Consensus size: 28
71691952 GACAAGATTG
* * *
71691962 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATATA
*
71691992 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATATA
*
71692020 GCACTAAGTGTGCGAGTTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTAAT-TATATA
71692049 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
71692063 GATTCACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
28 26 0.41
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATATA
Found at i:71701415 original size:40 final size:39
Alignment explanation
Indices: 71701370--71701577 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
71701360 CGGAATACAA
*
71701370 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
71701410 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
71701450 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
71701490 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
71701530 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
71701570 CCGGATAT
1 CCGGATAT
71701578 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:71701510 original size:80 final size:81
Alignment explanation
Indices: 71701370--71701575 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
71701360 CGGAATACAA
* * *
71701370 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
71701434 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
71701450 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
71701513 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
71701530 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
71701576 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:71704502 original size:40 final size:40
Alignment explanation
Indices: 71704375--71704504 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
71704365 ATGCTGGAAA
* * *
71704375 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
71704415 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
71704455 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
71704495 TTATATCCGG
1 TTATATCCGG
71704505 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:71712424 original size:124 final size:124
Alignment explanation
Indices: 71712202--71712426 Score: 335
Period size: 124 Copynumber: 1.8 Consensus size: 124
71712192 GAATTATGTG
* * * * * *
71712202 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
71712267 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
71712326 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
71712391 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
71712427 CCGGGTTAAG
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
123 3 0.03
124 86 0.97
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:71712548 original size:40 final size:40
Alignment explanation
Indices: 71712421--71712550 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
71712411 TTGCTGGAAA
* * *
71712421 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
71712461 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
71712501 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
71712541 TTATATCCGG
1 TTATATCCGG
71712551 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:71714995 original size:50 final size:50
Alignment explanation
Indices: 71714883--71715246 Score: 274
Period size: 50 Copynumber: 7.5 Consensus size: 50
71714873 AGATGTCGAC
* * * * * * *
71714883 GCCATGTCCCGGACATGGTCTTACATTGGCTCGC--ACATCAAAGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCAAGGCCGAT
* *
71714931 GCCATGTCCAAGACATGGTCTTACACTGACTCTCATATATCGAGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCAAGGCCGAT
* * * * *
71714981 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTGTCAATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCAAGGCCGAT
* * * * *
71715031 ACCATGTCCCAGACATGTTCTTACTCTGA----CACATCTCAA-GCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCAAGGCCGAT
* * * * *
71715076 GCCATGTCCCAGACATGGTCTTACGCT-AGCTTTCATATCTCGAGGCTGAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATATATCAAGGCCGAT
* * * **
71715126 GCCATCTCCCAGACATGGTCTTACACT-AGCTCTC--GTCTCAATACCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATATATCAAGGCCGAT
* * ** *
71715174 GTCATGTCCCAAACATGGTCTTACACT-AGCTCTCATA-AT-GTGGCCAAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATATATCAAGGCCGAT
*
71715222 G-CATGTGCCAGACAT-GTCTTACACT
1 GCCATGTCCCAGACATGGTCTTACACT
71715247 AGTACACATA
Statistics
Matches: 256, Mismatches: 50, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
44 1 0.00
45 29 0.11
46 17 0.07
47 12 0.05
48 74 0.29
49 9 0.04
50 114 0.45
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCAAGGCCGAT
Found at i:71715095 original size:95 final size:98
Alignment explanation
Indices: 71714975--71715255 Score: 281
Period size: 95 Copynumber: 2.9 Consensus size: 98
71714965 ATATATCGAG
* * * * *
71714975 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTGTCAATGCCAATACCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCAAGGCCAATACCATCTCC
* *
71715040 CAGACATGTTCTTACTCT-G-ACACATCTCAA-
66 CAGACATGGTCTTACACTAGCACACATCTCAAT
* * * ** *
71715070 GCCGATGCCATGTCCCAGACATGGTCTTACGCTAGCTTTCATATCTCGAGGCTGATGCCATCTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCAAGGCCAATACCATCTCC
* * *
71715135 CAGACATGGTCTTACACTAGCTCTCGTCTCAAT
66 CAGACATGGTCTTACACTAGCACACATCTCAAT
* * * * * * *
71715168 ACCGATGTCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATGT---GGCCAAT-GCATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCTCAAGGCCAATACCATCTC
*
71715229 CCAGACAT-GTCTTACACTAGTACACAT
65 CCAGACATGGTCTTACACTAGCACACAT
71715256 ATCACCCAAA
Statistics
Matches: 151, Mismatches: 31, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
94 15 0.10
95 82 0.54
96 6 0.04
97 8 0.05
98 37 0.25
99 3 0.02
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (98 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCAAGGCCAATACCATCTCC
CAGACATGGTCTTACACTAGCACACATCTCAAT
Found at i:71715227 original size:145 final size:145
Alignment explanation
Indices: 71714929--71715248 Score: 362
Period size: 145 Copynumber: 2.2 Consensus size: 145
71714919 ATCAAAGTCG
* *
71714929 ATGCCATGTCCAAGACATGGTCTTACACT-GACTCTCATATATCGAGGCCGATGCCATGTCCCAG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGACTCTCATATATCGAGGCCGATGCCATCTCCCAG
* * * * *
71714993 ACATGGTCTTACACTGGCTCTCATCTGTCAATGCCAATACCATGTCCCAGACATGTTCTTACTCT
66 ACATGGTCTTACACTAGCTCTCATC-GTCAATACCAATACCATGTCCCAAACATGGTCTTACACT
* *
71715058 GACACATCTCAAGCCG
130 GACACATATCAAGCCA
* * * *
71715074 ATGCCATGTCCCAGACATGGTCTTACGCTAG-CTTTCATATCTCGAGGCTGATGCCATCTCCCAG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGACTCTCATATATCGAGGCCGATGCCATCTCCCAG
* * **
71715138 ACATGGTCTTACACTAGCTCTCGTC-TCAATACCGATGTCATGTCCCAAACATGGTCTTACACTA
66 ACATGGTCTTACACTAGCTCTCATCGTCAATACCAATACCATGTCCCAAACATGGTCTTACACT-
* * ***
71715202 GCTCTCATAATGTGGCCA
130 G-ACACAT-ATCAAGCCA
*
71715220 ATG-CATGTGCCAGACAT-GTCTTACACTAG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG
71715249 TACACATATC
Statistics
Matches: 147, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
143 31 0.21
144 12 0.08
145 96 0.65
146 8 0.05
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (145 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGACTCTCATATATCGAGGCCGATGCCATCTCCCAG
ACATGGTCTTACACTAGCTCTCATCGTCAATACCAATACCATGTCCCAAACATGGTCTTACACTG
ACACATATCAAGCCA
Found at i:71718696 original size:29 final size:29
Alignment explanation
Indices: 71718653--71718730 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 29
71718643 TGAATGTGAC
* *
71718653 TGGGCCTAAGGGGGCCATATA-AATGTTATT
1 TGGGCCTAA-TGGGCCATATACAA-GTGATT
*
71718683 TGGGCCTAATGGGCCATGTACAAGTGATT
1 TGGGCCTAATGGGCCATATACAAGTGATT
71718712 TGGGCCTAATGGGCCATAT
1 TGGGCCTAATGGGCCATAT
71718731 GAATATGATT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
29 32 0.74
30 11 0.26
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATACAAGTGATT
Found at i:71718739 original size:29 final size:28
Alignment explanation
Indices: 71718640--71718751 Score: 93
Period size: 29 Copynumber: 3.9 Consensus size: 28
71718630 GTGAGCATGA
* * *
71718640 ATATGAATGTGACTGGGCCTAAGGGGGCC
1 ATATGAATATGATTGGGCCTAA-TGGGCC
* * *
71718669 ATATAAATGTTATTTGGGCCTAATGGGCC
1 ATATGAATATGA-TTGGGCCTAATGGGCC
*
71718698 ATGT-ACA-AGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATA-TGA-TTGGGCCTAATGGGCC
*
71718727 ATATGAATATGATTGGGCTTAATGG
1 ATATGAATATGATTGGGCCTAATGG
71718752 TCCAGATACA
Statistics
Matches: 69, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
28 13 0.19
29 45 0.65
30 11 0.16
ACGTcount: A:0.27, C:0.13, G:0.30, T:0.29
Consensus pattern (28 bp):
ATATGAATATGATTGGGCCTAATGGGCC
Found at i:71719067 original size:26 final size:26
Alignment explanation
Indices: 71719038--71719092 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
71719028 AAATTGTAAT
* *
71719038 TAAGG-GAAAATTTACCGAAATACCCC
1 TAAGGAGAAAA-TGACCAAAATACCCC
71719064 TAAGGATGAAAATGACCAAAATACCCC
1 TAAGGA-GAAAATGACCAAAATACCCC
71719091 TA
1 TA
71719093 GTTGTTGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 5 0.20
27 15 0.60
28 5 0.20
ACGTcount: A:0.45, C:0.22, G:0.15, T:0.18
Consensus pattern (26 bp):
TAAGGAGAAAATGACCAAAATACCCC
Found at i:71719848 original size:17 final size:18
Alignment explanation
Indices: 71719815--71719849 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
71719805 TTTTAAGAAG
71719815 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
71719833 GGTTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
71719850 TTCAATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:71723192 original size:29 final size:29
Alignment explanation
Indices: 71723158--71723246 Score: 99
Period size: 30 Copynumber: 3.1 Consensus size: 29
71723148 GAATATAAGT
71723158 GTGATTTGGGCTTAATGGGCCATATGCAG
1 GTGATTTGGGCTTAATGGGCCATATGCAG
* * *
71723187 GTGATTTGGGCCCTAATGGGCCATATGAAT
1 GTGATTTGGG-CTTAATGGGCCATATGCAG
* * * *
71723217 AT-AATTGGGCTTAATGGGCCAGATACAG
1 GTGATTTGGGCTTAATGGGCCATATGCAG
71723245 GT
1 GT
71723247 ATGTGAAATT
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
28 15 0.31
29 16 0.33
30 17 0.35
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (29 bp):
GTGATTTGGGCTTAATGGGCCATATGCAG
Found at i:71724329 original size:17 final size:18
Alignment explanation
Indices: 71724297--71724330 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
71724287 TTTAAGAAGG
71724297 GTTTTCAATGAAAACACA
1 GTTTTCAATGAAAACACA
*
71724315 GTTTTCACT-AAAACAC
1 GTTTTCAATGAAAACAC
71724331 TTCAATGTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (18 bp):
GTTTTCAATGAAAACACA
Found at i:71735757 original size:2 final size:2
Alignment explanation
Indices: 71735750--71735775 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
71735740 TAATATACAA
71735750 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
71735776 GTATGTGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71747073 original size:85 final size:84
Alignment explanation
Indices: 71746945--71747109 Score: 224
Period size: 85 Copynumber: 2.0 Consensus size: 84
71746935 TACCATACCA
* * * *
71746945 ATGCCATATCCCAGATATGGCCTTACATGTAATCTCGTATTGATGCCAATAGT-CCAGCTATGGT
1 ATGCCATATCCCAGATACGGCCTTACACGTAATCTCATATTGATGCC-ATA-TCCCAGATATGGT
71747009 CTTACACGAAATCTCATATCG
64 CTTACACGAAATCTCATATCG
* * *
71747030 ATGCCATATCCCAGATACGGTCTTACACGTAGTCTCATTTTGATGCCATATCCCAGATATGGTCT
1 ATGCCATATCCCAGATACGGCCTTACACGTAATCTCATATTGATGCCATATCCCAGATATGGTCT
* *
71747095 TACACGTAGTCTCAT
66 TACACGAAATCTCAT
71747110 TAACCCTAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
83 1 0.01
84 28 0.40
85 41 0.59
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (84 bp):
ATGCCATATCCCAGATACGGCCTTACACGTAATCTCATATTGATGCCATATCCCAGATATGGTCT
TACACGAAATCTCATATCG
Found at i:71747110 original size:42 final size:42
Alignment explanation
Indices: 71746945--71747109 Score: 215
Period size: 42 Copynumber: 3.9 Consensus size: 42
71746935 TACCATACCA
* * *
71746945 ATGCCATATCCCAGATATGGCCTTACATGTAATCTCGTATTG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATTG
* * *
71746987 ATGCCAATAGT-CCAGCTATGGTCTTACACGAAATCTCATATCG
1 ATGCC-ATA-TCCCAGATATGGTCTTACACGTAATCTCATATTG
* * *
71747030 ATGCCATATCCCAGATACGGTCTTACACGTAGTCTCATTTTG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATTG
*
71747072 ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCAT
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCAT
71747110 TAACCCTAAT
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
41 1 0.01
42 71 0.66
43 34 0.32
44 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATTG
Found at i:71754298 original size:22 final size:22
Alignment explanation
Indices: 71754271--71754312 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
71754261 AGGACCAATT
71754271 TGTAAAA-TGGTTATAAAATGTG
1 TGTAAAAGT-GTTATAAAATGTG
*
71754293 TGTAAAAGTGTTATTAAATG
1 TGTAAAAGTGTTATAAAATG
71754313 AAACATGTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.38
Consensus pattern (22 bp):
TGTAAAAGTGTTATAAAATGTG
Found at i:71762480 original size:43 final size:43
Alignment explanation
Indices: 71762418--71762499 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
71762408 AGATATGTGG
* * *
71762418 CATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCAAA
1 CATCCGAGCTCATTGAGAGGTCCCAGTTCATTAGGGATGCAAA
* *
71762461 CATCCGAGCTTATTTAGAGGTCCCAGTTCATTAGGGATG
1 CATCCGAGCTCATTGAGAGGTCCCAGTTCATTAGGGATG
71762500 TGTTACATGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (43 bp):
CATCCGAGCTCATTGAGAGGTCCCAGTTCATTAGGGATGCAAA
Found at i:71764676 original size:27 final size:27
Alignment explanation
Indices: 71764646--71764700 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
71764636 AGGTGCAAGT
71764646 TGTTCTTCCCTTAGTGCAATGTCTATG
1 TGTTCTTCCCTTAGTGCAATGTCTATG
71764673 TGTTCTTCCCTTAGTGCAATGTCTATG
1 TGTTCTTCCCTTAGTGCAATGTCTATG
71764700 T
1 T
71764701 TCATACAACC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.15, C:0.22, G:0.18, T:0.45
Consensus pattern (27 bp):
TGTTCTTCCCTTAGTGCAATGTCTATG
Found at i:71765349 original size:2 final size:2
Alignment explanation
Indices: 71765342--71765376 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
71765332 GATAAGAGTG
*
71765342 TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
71765377 TTATCCTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:71767359 original size:49 final size:49
Alignment explanation
Indices: 71767280--71767456 Score: 230
Period size: 49 Copynumber: 3.6 Consensus size: 49
71767270 AGATACCAAC
*
71767280 GCCATGTCCCAGACATGGTCTTACACTGACTCTCA-ACTATCGCTGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGACTCTCATA-TATCGATGTCGAT
* *
71767330 GCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGATGTCGAT
* * ** *
71767379 GTCGTGTCCCAGACAGAACTTACACTGACTCTCATATATCGGTGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGATGTCGAT
* * *
71767428 GCCATGTCCCAGATAGGTATTGCACTGAC
1 GCCATGTCCCAGACAGGTCTTACACTGAC
71767457 ACGCAACAAG
Statistics
Matches: 109, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
49 93 0.85
50 16 0.15
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (49 bp):
GCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGATGTCGAT
Found at i:71767479 original size:98 final size:99
Alignment explanation
Indices: 71767284--71767479 Score: 211
Period size: 98 Copynumber: 2.0 Consensus size: 99
71767274 ACCAACGCCA
** *
71767284 TGTCCCAGACATGGTCTTACACTGACTCTCAACTATCGCTGTCGATGCCATGTCCCAGACAGGTC
1 TGTCCCAGACATGAACTTACACTGACTCTCAACTATCGCTGTCGATGCCATGTCCCAGACAGGTA
*** * * * * *
71767349 TTACACTGACTTTCATATATCGAGGTCGATGTCG
66 TTACACTGACACGCATAAAGCAACGTCCATGTCG
* *
71767383 TGTCCCAGACA-GAACTTACACTGACTCTCATA-TATCGGTGTCGATGCCATGTCCCAGATAGGT
1 TGTCCCAGACATGAACTTACACTGACTCTCA-ACTATCGCTGTCGATGCCATGTCCCAGACAGGT
*
71767446 ATTGCACTGACACGCA-ACAAGCTAACG-CCATGTC
65 ATTACACTGACACGCATA-AAGC-AACGTCCATGTC
71767480 CCAAACAGGT
Statistics
Matches: 80, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
97 1 0.01
98 65 0.81
99 14 0.17
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.27
Consensus pattern (99 bp):
TGTCCCAGACATGAACTTACACTGACTCTCAACTATCGCTGTCGATGCCATGTCCCAGACAGGTA
TTACACTGACACGCATAAAGCAACGTCCATGTCG
Found at i:71769036 original size:32 final size:32
Alignment explanation
Indices: 71768995--71769058 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
71768985 TAATAACTAT
71768995 TGTTGTAAGCAAACTGTACCAGCGGTAAATAC
1 TGTTGTAAGCAAACTGTACCAGCGGTAAATAC
71769027 TGTTGTAAGCAAACTGTACCAGCGGTAAATAC
1 TGTTGTAAGCAAACTGTACCAGCGGTAAATAC
71769059 CTTTCTCAGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (32 bp):
TGTTGTAAGCAAACTGTACCAGCGGTAAATAC
Found at i:71774713 original size:49 final size:48
Alignment explanation
Indices: 71774639--71774799 Score: 171
Period size: 49 Copynumber: 3.3 Consensus size: 48
71774629 TCCCAAACAT
*
71774639 GGTCTTACACTGACTCTCATCTATCGATGTCGATGCCATATTCCAGACA
1 GGTCTTACACTAACTCTCATCTATCGATGTCGATGCCAT-TTCCAGACA
* * * * * * *
71774688 GGTTTTACACTAACTTTCATATATCGA-GACCGATGTCGTGTCCCAGACA
1 GGTCTTACACTAACTCTCATCTATCGATG-TCGATGCCAT-TTCCAGACA
* * * *
71774737 GGTCTTACACTGACTCTCATCTATCGGTGTAGATGCCATGTCCTAGACA
1 GGTCTTACACTAACTCTCATCTATCGATGTCGATGCCATTTCC-AGACA
71774786 GGTCTTACACTAAC
1 GGTCTTACACTAAC
71774800 ACGCAACAAG
Statistics
Matches: 88, Mismatches: 21, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
48 3 0.03
49 84 0.95
50 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (48 bp):
GGTCTTACACTAACTCTCATCTATCGATGTCGATGCCATTTCCAGACA
Found at i:71774822 original size:98 final size:99
Alignment explanation
Indices: 71774627--71774804 Score: 234
Period size: 98 Copynumber: 1.8 Consensus size: 99
71774617 GCCGATGCAA
* * *
71774627 TGTCCCAAACATGGTCTTACACTGACTCTCATCTATCGATGTCGATGCCATATTCCAGACAGGTT
1 TGTCCCAAACATGGTCTTACACTGACTCTCATCTATCGATGTAGATGCCATAGTCCAGACAGGTC
*** * * *
71774692 TTACACTAACTTTCATATATCGAGACCGATGTCG
66 TTACACTAACACGCATAAAGCGAGACCAATGTCG
* *
71774726 TGTCCCAGACA-GGTCTTACACTGACTCTCATCTATCGGTGTAGATGCCAT-GTCCTAGACAGGT
1 TGTCCCAAACATGGTCTTACACTGACTCTCATCTATCGATGTAGATGCCATAGTCC-AGACAGGT
71774789 CTTACACTAACACGCA
65 CTTACACTAACACGCA
71774805 ACAAGCTAAT
Statistics
Matches: 70, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
97 3 0.04
98 57 0.81
99 10 0.14
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (99 bp):
TGTCCCAAACATGGTCTTACACTGACTCTCATCTATCGATGTAGATGCCATAGTCCAGACAGGTC
TTACACTAACACGCATAAAGCGAGACCAATGTCG
Found at i:71774880 original size:11 final size:11
Alignment explanation
Indices: 71774864--71774892 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
71774854 CGAGGCCGAT
71774864 ACATGTCCCAG
1 ACATGTCCCAG
71774875 ACATGTCCCAG
1 ACATGTCCCAG
71774886 ACATGTC
1 ACATGTC
71774893 TTACACTGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.28, C:0.34, G:0.17, T:0.21
Consensus pattern (11 bp):
ACATGTCCCAG
Found at i:71776130 original size:43 final size:43
Alignment explanation
Indices: 71776069--71776157 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
71776059 TGTGGTCCCA
71776069 AAACTACTGTTTTGACTAAGCCCAAAATCAGACCGTTACACAC
1 AAACTACTGTTTTGACTAAGCCCAAAATCAGACCGTTACACAC
71776112 AAACTACTGTTTTGACTAAGCCCAAAATCAGACCGTTACACAC
1 AAACTACTGTTTTGACTAAGCCCAAAATCAGACCGTTACACAC
71776155 AAA
1 AAA
71776158 TTATATAAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.39, C:0.27, G:0.11, T:0.22
Consensus pattern (43 bp):
AAACTACTGTTTTGACTAAGCCCAAAATCAGACCGTTACACAC
Found at i:71777783 original size:31 final size:31
Alignment explanation
Indices: 71777759--71777832 Score: 102
Period size: 28 Copynumber: 2.5 Consensus size: 31
71777749 ATATTGAGTC
71777759 CGCACACTTAGTGCTATATATATATTCAGCT
1 CGCACACTTAGTGCTATATATATATTCAGCT
*
71777790 CGCACACTTAGTGC--TATATA-A-TCAAACT
1 CGCACACTTAGTGCTATATATATATTC-AGCT
71777818 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71777833 GTACAAATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
27 2 0.05
28 18 0.45
29 6 0.15
31 14 0.35
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31
Consensus pattern (31 bp):
CGCACACTTAGTGCTATATATATATTCAGCT
Found at i:71777828 original size:28 final size:29
Alignment explanation
Indices: 71777759--71777832 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 29
71777749 ATATTGAGTC
*
71777759 CGCACACTTAGTGCTATATATATATTCAGCT
1 CGCACACTTAGTGCTATATATATA-T-AACT
71777790 CGCACACTTAGTGCTATATA-ATCA-AACT
1 CGCACACTTAGTGCTATATATAT-ATAACT
71777818 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71777833 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
28 18 0.44
30 2 0.05
31 21 0.51
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATATATAACT
Found at i:71778015 original size:31 final size:31
Alignment explanation
Indices: 71777977--71778040 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
71777967 TACATACATG
71777977 TATATAAATTTATCATTCCTTTCGGCATAAT
1 TATATAAATTTATCATTCCTTTCGGCATAAT
71778008 TATATAAATTTATCATTCCTTTCGGCATAAT
1 TATATAAATTTATCATTCCTTTCGGCATAAT
71778039 TA
1 TA
71778041 CATAGACATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.33, C:0.16, G:0.06, T:0.45
Consensus pattern (31 bp):
TATATAAATTTATCATTCCTTTCGGCATAAT
Found at i:71780306 original size:35 final size:35
Alignment explanation
Indices: 71780267--71780334 Score: 127
Period size: 35 Copynumber: 1.9 Consensus size: 35
71780257 ATCTCATGTA
*
71780267 TAATTTGGGAACCATAACCCTAATATTTATAACCT
1 TAATTTGGAAACCATAACCCTAATATTTATAACCT
71780302 TAATTTGGAAACCATAACCCTAATATTTATAAC
1 TAATTTGGAAACCATAACCCTAATATTTATAAC
71780335 ATTGGCATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.40, C:0.19, G:0.07, T:0.34
Consensus pattern (35 bp):
TAATTTGGAAACCATAACCCTAATATTTATAACCT
Found at i:71780394 original size:17 final size:17
Alignment explanation
Indices: 71780372--71780405 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
71780362 TAATTAACCC
*
71780372 ATCATTAATTAGAATTT
1 ATCATTAATTACAATTT
71780389 ATCATTAATTACAATTT
1 ATCATTAATTACAATTT
71780406 GATTATAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.41, C:0.09, G:0.03, T:0.47
Consensus pattern (17 bp):
ATCATTAATTACAATTT
Found at i:71781757 original size:15 final size:15
Alignment explanation
Indices: 71781739--71781784 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
71781729 TTAATTTATT
*
71781739 TTAATATTAAAATTA
1 TTAATATTAAATTTA
* *
71781754 TTAATATTCAATTTT
1 TTAATATTAAATTTA
*
71781769 TTAATTTTAAATTTA
1 TTAATATTAAATTTA
71781784 T
1 T
71781785 CTTTACTCTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (15 bp):
TTAATATTAAATTTA
Found at i:71782039 original size:24 final size:24
Alignment explanation
Indices: 71782006--71782052 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
71781996 AAAACAGGTT
71782006 TCTTCCCCCAGTAAAACTCTGCTA
1 TCTTCCCCCAGTAAAACTCTGCTA
* * *
71782030 TCTTCTCCCAGTTAAACTTTGCT
1 TCTTCCCCCAGTAAAACTCTGCT
71782053 CTTTTTTCTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.21, C:0.34, G:0.09, T:0.36
Consensus pattern (24 bp):
TCTTCCCCCAGTAAAACTCTGCTA
Found at i:71783090 original size:24 final size:24
Alignment explanation
Indices: 71783063--71783120 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
71783053 CTTCTCTAAT
71783063 TTAAACTCTGCTATCTTCTCCCAG
1 TTAAACTCTGCTATCTTCTCCCAG
* * * * *
71783087 TTAAACTATGTTATCTTTTTCTAG
1 TTAAACTCTGCTATCTTCTCCCAG
71783111 TTAAACTCTG
1 TTAAACTCTG
71783121 ATTACTTCAG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.24, C:0.22, G:0.09, T:0.45
Consensus pattern (24 bp):
TTAAACTCTGCTATCTTCTCCCAG
Found at i:71785684 original size:52 final size:52
Alignment explanation
Indices: 71785606--71785704 Score: 171
Period size: 52 Copynumber: 1.9 Consensus size: 52
71785596 AGCTTGTAAA
*
71785606 AATCAGATATCAAGTTCCCACTGAGTTAGTTCAACCTATTTCTATTCTAGAG
1 AATCAGATATCAAGTTCCCACCGAGTTAGTTCAACCTATTTCTATTCTAGAG
* *
71785658 AATCAGATATCAAGTTCCCACCGAGTTGGTTCAACCTATTTTTATTC
1 AATCAGATATCAAGTTCCCACCGAGTTAGTTCAACCTATTTCTATTC
71785705 CAGAATGGAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.35
Consensus pattern (52 bp):
AATCAGATATCAAGTTCCCACCGAGTTAGTTCAACCTATTTCTATTCTAGAG
Found at i:71794372 original size:16 final size:16
Alignment explanation
Indices: 71794335--71794381 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
71794325 ATATTATTAT
71794335 TAAATTAA-TTTT-AA
1 TAAATTAATTTTTCAA
*
71794349 TTAATTAATTTTTCAA
1 TAAATTAATTTTTCAA
71794365 TAAATTAATTTTCTCAA
1 TAAATTAATTTT-TCAA
71794382 CCCAATTCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 7 0.25
15 4 0.14
16 13 0.46
17 4 0.14
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (16 bp):
TAAATTAATTTTTCAA
Found at i:71795065 original size:36 final size:36
Alignment explanation
Indices: 71795018--71795086 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
71795008 GAATGATACT
71795018 ACATATTGCAGAAATTATATATACCTAACACACCAA
1 ACATATTGCAGAAATTATATATACCTAACACACCAA
*
71795054 ACATATTGCAGAAGTTATATATACCTAACACAC
1 ACATATTGCAGAAATTATATATACCTAACACAC
71795087 TAACTTTCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.45, C:0.22, G:0.07, T:0.26
Consensus pattern (36 bp):
ACATATTGCAGAAATTATATATACCTAACACACCAA
Found at i:71800000 original size:13 final size:13
Alignment explanation
Indices: 71799982--71800006 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71799972 CCTGGCACTC
71799982 GCCCATGTCCTTG
1 GCCCATGTCCTTG
71799995 GCCCATGTCCTT
1 GCCCATGTCCTT
71800007 CACACGCCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.40, G:0.20, T:0.32
Consensus pattern (13 bp):
GCCCATGTCCTTG
Found at i:71802642 original size:46 final size:45
Alignment explanation
Indices: 71802552--71802678 Score: 161
Period size: 46 Copynumber: 2.8 Consensus size: 45
71802542 TGGGGTCAGG
71802552 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACATATCTC-A
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACTGACATATCTCAA
*
71802597 TAGCCGATG-CATGTCCCAGACATGTCTTACACT-AGCACTCGTCTCAA
1 T-GCCGATGCCATGTCCCAGACATGTCTTACACTGA-CA-T-ATCTCAA
*
71802644 TGCCGATGCCATGTCCCAAACATGATCTTACACTG
1 TGCCGATGCCATGTCCCAGACATG-TCTTACACTG
71802679 GCTCTCATAA
Statistics
Matches: 72, Mismatches: 2, Indels: 12
0.84 0.02 0.14
Matches are distributed among these distances:
43 1 0.01
44 12 0.17
45 16 0.22
46 18 0.25
47 16 0.22
48 9 0.12
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.26
Consensus pattern (45 bp):
TGCCGATGCCATGTCCCAGACATGTCTTACACTGACATATCTCAA
Found at i:71805698 original size:36 final size:37
Alignment explanation
Indices: 71805626--71805700 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 37
71805616 TTACAAGCCA
71805626 AAATCATTATAAGCCATATCTCATGGCTACATACAAC
1 AAATCATTATAAGCCATATCTCATGGCTACATACAAC
71805663 AAATCATTATAAGCCA-AT-TCATTGGCTA-ATCACAAC
1 AAATCATTATAAGCCATATCTCA-TGGCTACAT-ACAAC
71805699 AA
1 AA
71805701 CATCGATCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
35 5 0.14
36 15 0.42
37 16 0.44
ACGTcount: A:0.43, C:0.23, G:0.08, T:0.27
Consensus pattern (37 bp):
AAATCATTATAAGCCATATCTCATGGCTACATACAAC
Found at i:71813701 original size:39 final size:39
Alignment explanation
Indices: 71813497--71813699 Score: 325
Period size: 39 Copynumber: 5.2 Consensus size: 39
71813487 GTTGTGGAAC
* * *
71813497 TCGCACAAATGCCTTCGGGACTTAACCCGGATATCACAAC
1 TCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAAT
* *
71813537 TCGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAAC
1 TCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT
71813576 TCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT
1 TCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT
*
71813615 TCGCACATTTGCCTTCGGGCTTAGCCCGGATATCACAAT
1 TCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT
* *
71813654 TCGCACATTTGCCTTCGGGCTTAGCCCGGGTATCACAAT
1 TCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT
71813693 TCGCACA
1 TCGCACA
71813700 TTCATACACA
Statistics
Matches: 156, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 138 0.88
40 18 0.12
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.25
Consensus pattern (39 bp):
TCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT
Found at i:71827081 original size:30 final size:30
Alignment explanation
Indices: 71827047--71827106 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
71827037 ATTTAATATG
71827047 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
71827077 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
71827107 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:71828818 original size:21 final size:21
Alignment explanation
Indices: 71828794--71828842 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
71828784 AATAGAAGTC
* *
71828794 ACACGCCCATGTGGCTTTGGG
1 ACACGCCCACGTGGCTTTAGG
*
71828815 ACACGCCCGCGTGGCTTTAGG
1 ACACGCCCACGTGGCTTTAGG
71828836 ACACGCC
1 ACACGCC
71828843 TGAGTGGTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.16, C:0.35, G:0.31, T:0.18
Consensus pattern (21 bp):
ACACGCCCACGTGGCTTTAGG
Found at i:71828849 original size:21 final size:21
Alignment explanation
Indices: 71828794--71828849 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
71828784 AATAGAAGTC
*
71828794 ACACGCCC-ATGTGGCTTTGGG
1 ACACGCCCGA-GTGGCTTTAGG
*
71828815 ACACGCCCGCGTGGCTTTAGG
1 ACACGCCCGAGTGGCTTTAGG
*
71828836 ACACGCCTGAGTGG
1 ACACGCCCGAGTGG
71828850 TTAGGCTGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.16, C:0.30, G:0.34, T:0.20
Consensus pattern (21 bp):
ACACGCCCGAGTGGCTTTAGG
Found at i:71832183 original size:19 final size:17
Alignment explanation
Indices: 71832155--71832189 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 17
71832145 ATATGGAGAA
71832155 AATGATAAAAATTATTTT
1 AATGAT-AAAATTATTTT
71832173 AATGAATAAAATTATTT
1 AATG-ATAAAATTATTT
71832190 AAAAATTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (17 bp):
AATGATAAAATTATTTT
Found at i:71832280 original size:7 final size:7
Alignment explanation
Indices: 71832263--71832296 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
71832253 AATTAAGTTA
71832263 TTAATATT
1 TTAA-ATT
71832271 TTAAATT
1 TTAAATT
71832278 TTAAATT
1 TTAAATT
*
71832285 TTAAAAT
1 TTAAATT
71832292 TTAAA
1 TTAAA
71832297 ATTATTCTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
7 21 0.84
8 4 0.16
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (7 bp):
TTAAATT
Found at i:71832703 original size:30 final size:29
Alignment explanation
Indices: 71832667--71832727 Score: 77
Period size: 30 Copynumber: 2.1 Consensus size: 29
71832657 AATTCTTTAA
**
71832667 AAAATTAAATTAAATTAAAATCTTATATAT
1 AAAATTAAACAAAATTAAAAT-TTATATAT
* *
71832697 AAAATTACACAAAATTAAAATTTTTATAT
1 AAAATTAAACAAAATTAAAATTTATATAT
71832726 AA
1 AA
71832728 CATCCCACAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 9 0.33
30 18 0.67
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (29 bp):
AAAATTAAACAAAATTAAAATTTATATAT
Found at i:71832736 original size:29 final size:30
Alignment explanation
Indices: 71832678--71832736 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
71832668 AAATTAAATT
*
71832678 AAATTAAAATCTTATATATAAAATTACACA
1 AAATTAAAATCTTATATATAAAATCACACA
* * *
71832708 AAATTAAAAT-TTTTATATAACATCCCACA
1 AAATTAAAATCTTATATATAAAATCACACA
71832737 TTACATGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 15 0.60
30 10 0.40
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.34
Consensus pattern (30 bp):
AAATTAAAATCTTATATATAAAATCACACA
Found at i:71832953 original size:40 final size:40
Alignment explanation
Indices: 71832908--71832990 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
71832898 GACGTTATTG
71832908 CTTGAAAGTATGAAAAACACGTTTAGTATTGTTTCCTTTT
1 CTTGAAAGTATGAAAAACACGTTTAGTATTGTTTCCTTTT
71832948 CTTGAAAGTATGAAAAACACGTTTAGTATTGTTTCCTTTT
1 CTTGAAAGTATGAAAAACACGTTTAGTATTGTTTCCTTTT
71832988 CTT
1 CTT
71832991 CTGTTAGTCT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.29, C:0.13, G:0.14, T:0.43
Consensus pattern (40 bp):
CTTGAAAGTATGAAAAACACGTTTAGTATTGTTTCCTTTT
Found at i:71835908 original size:21 final size:21
Alignment explanation
Indices: 71835857--71835934 Score: 120
Period size: 22 Copynumber: 3.6 Consensus size: 21
71835847 AAAAATGAAT
*
71835857 AAATTAATAAATTGTCTATACA
1 AAATGAATAAATTGTCTATA-A
71835879 AAATGAATAAATTGTCTATAA
1 AAATGAATAAATTGTCTATAA
*
71835900 AAATTAATAAATTGTCTATAAA
1 AAATGAATAAATTGTCTAT-AA
71835922 AAATGAATAAATT
1 AAATGAATAAATT
71835935 TGTTAACGAG
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
21 19 0.37
22 33 0.63
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.35
Consensus pattern (21 bp):
AAATGAATAAATTGTCTATAA
Found at i:71838224 original size:20 final size:21
Alignment explanation
Indices: 71838186--71838225 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
71838176 TTGGAAGGTA
71838186 GATATCACGATACCCAAAGTG
1 GATATCACGATACCCAAAGTG
*
71838207 GATATCGCGATA-CCAAAGT
1 GATATCACGATACCCAAAGT
71838226 AAGTGGTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.20
Consensus pattern (21 bp):
GATATCACGATACCCAAAGTG
Found at i:71841896 original size:54 final size:54
Alignment explanation
Indices: 71841814--71841923 Score: 220
Period size: 54 Copynumber: 2.0 Consensus size: 54
71841804 TGACAAAGTT
71841814 GGGGGCAAGTGCACTGTGAGGGGTAAGCGACTGTTACATTAGAAAAAAGCTAGA
1 GGGGGCAAGTGCACTGTGAGGGGTAAGCGACTGTTACATTAGAAAAAAGCTAGA
71841868 GGGGGCAAGTGCACTGTGAGGGGTAAGCGACTGTTACATTAGAAAAAAGCTAGA
1 GGGGGCAAGTGCACTGTGAGGGGTAAGCGACTGTTACATTAGAAAAAAGCTAGA
71841922 GG
1 GG
71841924 TTATTTCGGG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.33, C:0.13, G:0.36, T:0.18
Consensus pattern (54 bp):
GGGGGCAAGTGCACTGTGAGGGGTAAGCGACTGTTACATTAGAAAAAAGCTAGA
Found at i:71849476 original size:24 final size:25
Alignment explanation
Indices: 71849430--71849482 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
71849420 TGCTTTAATA
* *
71849430 TTTTTAAAATTAATTATTCAATTAT
1 TTTTTAAAATAAAATATTCAATTAT
*
71849455 TTTTTAAAGTAAAATATT-AATTAT
1 TTTTTAAAATAAAATATTCAATTAT
71849479 TTTT
1 TTTT
71849483 ATTATAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 10 0.40
25 15 0.60
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (25 bp):
TTTTTAAAATAAAATATTCAATTAT
Found at i:71854645 original size:44 final size:45
Alignment explanation
Indices: 71854559--71854663 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 45
71854549 TGTAATATTG
*
71854559 TTGTTGTTGTCT-AAATGAAAAATCTAACTTATGTGATAGCTGGTA
1 TTGTTGTTGT-TGAAATGAAAAATCTAACTTATATGATAGCTGGTA
*
71854604 TTGTTGTTGTTGAAATGGAAAA-CTAACTTATATGACT-GCTGGTA
1 TTGTTGTTGTTGAAATGAAAAATCTAACTTATATGA-TAGCTGGTA
**
71854648 TTGAGGTTGTTGAAAT
1 TTGTTGTTGTTGAAAT
71854664 TGATCAATTC
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
44 34 0.63
45 20 0.37
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.40
Consensus pattern (45 bp):
TTGTTGTTGTTGAAATGAAAAATCTAACTTATATGATAGCTGGTA
Found at i:71854750 original size:20 final size:20
Alignment explanation
Indices: 71854727--71854772 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
71854717 TTATTTAATA
71854727 GATTCATTATTGTTTGAA-TC
1 GATTCATTATTGTTT-AACTC
*
71854747 GATTCATTGTTGTTTAACTC
1 GATTCATTATTGTTTAACTC
71854767 GATTCA
1 GATTCA
71854773 GACTCCAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 2 0.08
20 22 0.92
ACGTcount: A:0.24, C:0.13, G:0.15, T:0.48
Consensus pattern (20 bp):
GATTCATTATTGTTTAACTC
Found at i:71855145 original size:16 final size:17
Alignment explanation
Indices: 71855129--71855161 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
71855119 ACTAAGGATG
71855129 CAATTTTCTATGAATGC
1 CAATTTTCTATGAATGC
*
71855146 CCATTTTCTATGAATG
1 CAATTTTCTATGAATG
71855162 TCCTTCTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.42
Consensus pattern (17 bp):
CAATTTTCTATGAATGC
Found at i:71880510 original size:36 final size:36
Alignment explanation
Indices: 71880461--71880529 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 36
71880451 TAGGCCGTGT
* *
71880461 GTGACACATGGTTCCATCCTATGGGCATGGGCTTGC
1 GTGACACACGGTTCCATCCCATGGGCATGGGCTTGC
* *
71880497 GTGACACACGGTTCCTTCCCATGGGCGTGGGCT
1 GTGACACACGGTTCCATCCCATGGGCATGGGCT
71880530 ATGGCCGTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.14, C:0.28, G:0.32, T:0.26
Consensus pattern (36 bp):
GTGACACACGGTTCCATCCCATGGGCATGGGCTTGC
Found at i:71884354 original size:140 final size:140
Alignment explanation
Indices: 71884102--71884384 Score: 539
Period size: 140 Copynumber: 2.0 Consensus size: 140
71884092 CAAAATCAAA
71884102 GTAGTGTCTCCGTAGGAATTGATGTTACAATTCTGTCATTTCTTCAAATTAATCAAATTGTGATT
1 GTAGTGTCTCCGTAGGAATTGATGTTACAATTCTGTCATTTCTTCAAATTAATCAAATTGTGATT
71884167 TTACTTTTACACAGAAAGTTTATAGCAAAAACAACTACAAAACCAGACAAAATTTACTTTAAGAA
66 TTACTTTTACACAGAAAGTTTATAGCAAAAACAACTACAAAACCAGACAAAATTTACTTTAAGAA
*
71884232 TATGTGTAAT
131 GATGTGTAAT
*
71884242 GTAGTGTCTTCGTAGGAATTGATGTTACAATTCTGTCATTTCTTCAAATTAATCAAATTGTGATT
1 GTAGTGTCTCCGTAGGAATTGATGTTACAATTCTGTCATTTCTTCAAATTAATCAAATTGTGATT
*
71884307 TTGCTTTTACACAGAAAGTTTATAGCAAAAACAACTACAAAACCAGACAAAATTTACTTTAAGAA
66 TTACTTTTACACAGAAAGTTTATAGCAAAAACAACTACAAAACCAGACAAAATTTACTTTAAGAA
71884372 GATGTGTAAT
131 GATGTGTAAT
71884382 GTA
1 GTA
71884385 CTTCCCATCA
Statistics
Matches: 140, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
140 140 1.00
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (140 bp):
GTAGTGTCTCCGTAGGAATTGATGTTACAATTCTGTCATTTCTTCAAATTAATCAAATTGTGATT
TTACTTTTACACAGAAAGTTTATAGCAAAAACAACTACAAAACCAGACAAAATTTACTTTAAGAA
GATGTGTAAT
Found at i:71890370 original size:87 final size:88
Alignment explanation
Indices: 71890249--71890464 Score: 281
Period size: 87 Copynumber: 2.5 Consensus size: 88
71890239 ATCGACCAAT
* **
71890249 GAAAAGGGATAGCTTCGACTATCGGTTATGAAAAGGGATGGAGACAACCATCAACTATGAAAAGG
1 GAAAAGGGATAGTTTCGACTATCGAATATGAAAAGGGATGGAGACAACCATCAACTATGAAAAGG
*
71890314 GATGGTGACGACCATCAATT-AG
66 GATGGTGACAACCATCAATTAAG
* * * * * * * *
71890336 GAAAAGGGATAGTTTTGACTATCGACTATCAAAAGGGATAGTGACGACTATCGACTATGAAAAGG
1 GAAAAGGGATAGTTTCGACTATCGAATATGAAAAGGGATGGAGACAACCATCAACTATGAAAAGG
* *
71890401 GATGGTGACAACCATCGATTAAT
66 GATGGTGACAACCATCAATTAAG
* *
71890424 GAAAAGGGATGGTTTCGACCATCGAATATGAAAAGGGATGG
1 GAAAAGGGATAGTTTCGACTATCGAATATGAAAAGGGATGG
71890465 TTTTGACCAT
Statistics
Matches: 109, Mismatches: 19, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
87 73 0.67
88 36 0.33
ACGTcount: A:0.38, C:0.13, G:0.28, T:0.21
Consensus pattern (88 bp):
GAAAAGGGATAGTTTCGACTATCGAATATGAAAAGGGATGGAGACAACCATCAACTATGAAAAGG
GATGGTGACAACCATCAATTAAG
Done.