Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 252 of 444
Found at i:71890476 original size:29 final size:29
Alignment explanation
Indices: 71890275--71890465 Score: 188
Period size: 29 Copynumber: 6.6 Consensus size: 29
71890265 GACTATCGGT
* *
71890275 TATGAAAAGGGATGGAGACAACCATC-AA
1 TATGAAAAGGGATGGTGACGACCATCGAA
71890303 CTATGAAAAGGGATGGTGACGACCATC-AA
1 -TATGAAAAGGGATGGTGACGACCATCGAA
* * *** * *
71890332 TTAGGAAAAGGGATAGTTTTGACTATCGAC
1 -TATGAAAAGGGATGGTGACGACCATCGAA
* * * *
71890362 TATCAAAAGGGATAGTGACGACTATCGAC
1 TATGAAAAGGGATGGTGACGACCATCGAA
* *
71890391 TATGAAAAGGGATGGTGACAACCATCGAT
1 TATGAAAAGGGATGGTGACGACCATCGAA
**
71890420 TAATGAAAAGGGATGGTTTCGACCATCGAA
1 T-ATGAAAAGGGATGGTGACGACCATCGAA
71890450 TATGAAAAGGGATGGT
1 TATGAAAAGGGATGGT
71890466 TTTGACCATC
Statistics
Matches: 136, Mismatches: 24, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
29 110 0.81
30 26 0.19
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.21
Consensus pattern (29 bp):
TATGAAAAGGGATGGTGACGACCATCGAA
Found at i:71891211 original size:38 final size:39
Alignment explanation
Indices: 71891143--71891217 Score: 134
Period size: 38 Copynumber: 1.9 Consensus size: 39
71891133 AAATGGAAAG
71891143 TAAGTAAATAAAAAGATATATATAATCTTATAAAAAGTAT
1 TAAGTAAATAAAAAGA-ATATATAATCTTATAAAAAGTAT
71891183 TAAGTAAATAAAAAG-ATATATAATCTTATAAAAAG
1 TAAGTAAATAAAAAGAATATATAATCTTATAAAAAG
71891218 GTTGATGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
38 20 0.57
40 15 0.43
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.31
Consensus pattern (39 bp):
TAAGTAAATAAAAAGAATATATAATCTTATAAAAAGTAT
Found at i:71907405 original size:28 final size:29
Alignment explanation
Indices: 71907373--71907427 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
71907363 ACGGGTGACC
71907373 ACACGGGCGAGTG-TAGGCCGTGTGAAGG
1 ACACGGGCGAGTGCTAGGCCGTGTGAAGG
* *
71907401 ACACGGGCGTGTGCTTGGCCGTGTGAA
1 ACACGGGCGAGTGCTAGGCCGTGTGAA
71907428 AACCCCTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.18, C:0.20, G:0.44, T:0.18
Consensus pattern (29 bp):
ACACGGGCGAGTGCTAGGCCGTGTGAAGG
Found at i:71909121 original size:20 final size:21
Alignment explanation
Indices: 71909096--71909135 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
71909086 CTTATAATGA
71909096 TAAAAAATA-TTTAAATTTAT
1 TAAAAAATATTTTAAATTTAT
71909116 TAAAAAATATTTTAAATTTA
1 TAAAAAATATTTTAAATTTA
71909136 ACTTAATAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TAAAAAATATTTTAAATTTAT
Found at i:71910249 original size:2 final size:2
Alignment explanation
Indices: 71910242--71910280 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
71910232 AACCTAATCA
71910242 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
71910281 CGTGCATGGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:71911817 original size:23 final size:23
Alignment explanation
Indices: 71911791--71911834 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
71911781 CGCAAAAATA
* *
71911791 ATTAAATGTTAAATTTCATGTCT
1 ATTAAATGTGAAATTACATGTCT
*
71911814 ATTATATGTGAAATTACATGT
1 ATTAAATGTGAAATTACATGT
71911835 GTGAAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.45
Consensus pattern (23 bp):
ATTAAATGTGAAATTACATGTCT
Found at i:71913053 original size:2 final size:2
Alignment explanation
Indices: 71913046--71913071 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
71913036 GATGTCCAAG
71913046 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
71913072 GTGGTAAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71913136 original size:48 final size:48
Alignment explanation
Indices: 71913062--71913207 Score: 229
Period size: 48 Copynumber: 3.0 Consensus size: 48
71913052 ATATATATAT
* * *
71913062 ATATATATATGTGGTAAAGGCGAATGGCTAATGTAAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAG
71913110 ATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAG
** **
71913158 CCATGCATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAG
71913206 AT
1 AT
71913208 GTGTATATAT
Statistics
Matches: 89, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 89 1.00
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAG
Found at i:71914749 original size:46 final size:46
Alignment explanation
Indices: 71914682--71914857 Score: 219
Period size: 46 Copynumber: 3.8 Consensus size: 46
71914672 TGTAACCCGC
71914682 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* * * *
71914728 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-TTCGCAT
* *** * *
71914774 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* *
71914821 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
71914858 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
46 73 0.68
47 35 0.32
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:71914797 original size:93 final size:93
Alignment explanation
Indices: 71914690--71914860 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
71914680 GCCCATAAGT
* *
71914690 GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
71914755 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
71914783 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
71914848 CGAGTTCGGATGC
66 CGAGCTCGGATGC
71914861 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:71915319 original size:31 final size:30
Alignment explanation
Indices: 71915284--71915341 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
71915274 CAAAATCATA
71915284 TTTTGGAAAAATTACAATTTTGCCCCTAAAG
1 TTTT-GAAAAATTACAATTTTGCCCCTAAAG
* * * *
71915315 TTTTGCATATTTACACTTTTGCCCCTA
1 TTTTGAAAAATTACAATTTTGCCCCTA
71915342 GGCTCGGGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 19 0.83
31 4 0.17
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCTAAAG
Found at i:71918334 original size:39 final size:39
Alignment explanation
Indices: 71918255--71918407 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
71918245 TATGGTAACC
** * *
71918255 CGCACAAAGGCCTTTGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
71918295 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
71918334 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
71918373 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
71918408 TCGAACATTC
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 90 0.86
40 15 0.14
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:71918379 original size:78 final size:79
Alignment explanation
Indices: 71918224--71918406 Score: 251
Period size: 78 Copynumber: 2.3 Consensus size: 79
71918214 TCATTCAAAC
* * ** *
71918224 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTTGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
71918289 ACAACTCGCACAATT
65 ACAACTCGCACAATT
* ** *
71918304 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
* *
71918368 CAATTTGCACAATT
66 CAACTCGCACAATT
71918382 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
71918407 CTCGAACATT
Statistics
Matches: 92, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
78 52 0.57
79 31 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.24
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAACTCGCACAATT
Found at i:71920525 original size:15 final size:15
Alignment explanation
Indices: 71920501--71920563 Score: 83
Period size: 15 Copynumber: 4.2 Consensus size: 15
71920491 AGGAAACCGA
71920501 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
71920516 ATAGAGAAATCCAAA
1 ATAAAGAAATCCAAG
71920531 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
71920545 AATAAAGAAACCCAAG
1 -ATAAAGAAATCCAAG
71920561 ATA
1 ATA
71920564 CGATACTATG
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
14 1 0.02
15 38 0.93
16 2 0.05
ACGTcount: A:0.60, C:0.14, G:0.13, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:71923644 original size:93 final size:93
Alignment explanation
Indices: 71923516--71923686 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
71923506 GCCCATAAGT
* * * *
71923516 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
71923581 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
71923609 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
71923674 CGAGTTCGGATGC
66 CGAGCTCGGATGC
71923687 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:71923683 original size:46 final size:46
Alignment explanation
Indices: 71923508--71923683 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
71923498 TGTAACCCGC
* * *
71923508 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
71923554 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
71923600 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
71923647 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
71923684 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 68 0.62
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:71924148 original size:31 final size:30
Alignment explanation
Indices: 71924113--71924170 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
71924103 CAAAATCATA
71924113 TTTTGGAAAAATTACAATTTTGCCCCTAAAG
1 TTTT-GAAAAATTACAATTTTGCCCCTAAAG
* * * *
71924144 TTTTGCATATTTACACTTTTGCCCCTA
1 TTTTGAAAAATTACAATTTTGCCCCTA
71924171 GGCTCGGGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 19 0.83
31 4 0.17
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCTAAAG
Found at i:71925711 original size:31 final size:31
Alignment explanation
Indices: 71925676--71925737 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
71925666 TTTTAAATTT
71925676 GCTTAAGACTTACTAAGCTTATAAAAGCTTA
1 GCTTAAGACTTACTAAGCTTATAAAAGCTTA
71925707 GCTTAAGACTTACTAAGCTTATAAAAGCTTA
1 GCTTAAGACTTACTAAGCTTATAAAAGCTTA
71925738 CTCTGTTGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (31 bp):
GCTTAAGACTTACTAAGCTTATAAAAGCTTA
Found at i:71929758 original size:2 final size:2
Alignment explanation
Indices: 71929751--71929779 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
71929741 TCTAGTGTAC
71929751 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71929780 CCTTATTTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:71935920 original size:43 final size:42
Alignment explanation
Indices: 71935781--71935944 Score: 177
Period size: 42 Copynumber: 3.9 Consensus size: 42
71935771 TAGGGTTATG
* * *
71935781 TGTGATTTCATGTAAGACCATATTTGGGATATGGTATCGATA
1 TGTGATCTCATGTAAGACCATATCTGGGATATGGCATCGATA
* * * *
71935823 TGTGATTTCATGTAAGACCATTTCTGGGAAATGGCATCAATA
1 TGTGATCTCATGTAAGACCATATCTGGGATATGGCATCGATA
* * *
71935865 TGAGA-CATCATGTAAGACCATAACTGGGCTATCGGCATCGATA
1 TGTGATC-TCATGTAAGACCATATCTGGGATAT-GGCATCGATA
* * * *
71935908 TGTGATCCCATGTAAGACTATATCTCGAATATGGCAT
1 TGTGATCTCATGTAAGACCATATCTGGGATATGGCAT
71935945 TGGCATCTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
42 67 0.67
43 32 0.32
44 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (42 bp):
TGTGATCTCATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:71935942 original size:85 final size:84
Alignment explanation
Indices: 71935788--71935944 Score: 208
Period size: 85 Copynumber: 1.9 Consensus size: 84
71935778 ATGTGTGATT
** * ** * *
71935788 TCATGTAAGACCATATTTGGGATATGGTATCGATATGTGATTTCATGTAAGACCATTTCTGGGAA
1 TCATGTAAGACCATAACTGGGATATGGCATCGATATGTGATCCCATGTAAGACCATATCTGCGAA
71935853 ATGGCATCAATATGAGACA
66 ATGGCATCAATATGAGACA
* *
71935872 TCATGTAAGACCATAACTGGGCTATCGGCATCGATATGTGATCCCATGTAAGACTATATCT-CGA
1 TCATGTAAGACCATAACTGGGATAT-GGCATCGATATGTGATCCCATGTAAGACCATATCTGCGA
71935936 ATATGGCAT
65 A-ATGGCAT
71935945 TGGCATCTTA
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
84 25 0.40
85 37 0.60
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (84 bp):
TCATGTAAGACCATAACTGGGATATGGCATCGATATGTGATCCCATGTAAGACCATATCTGCGAA
ATGGCATCAATATGAGACA
Found at i:71939193 original size:28 final size:28
Alignment explanation
Indices: 71939124--71939224 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
71939114 GACAAGATTG
* * * *
71939124 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
71939154 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
71939182 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
71939211 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
71939225 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:71947157 original size:28 final size:28
Alignment explanation
Indices: 71947088--71947188 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
71947078 GACAAGATTG
* * * *
71947088 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
71947118 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
71947146 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
71947175 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
71947189 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:71954835 original size:23 final size:23
Alignment explanation
Indices: 71954804--71954886 Score: 80
Period size: 23 Copynumber: 3.6 Consensus size: 23
71954794 CTAAGTTGAT
* *
71954804 AAACAGTAAGTTCTATTGAACTA
1 AAACAGTAAGCTCTATCGAACTA
* *
71954827 AAACGGTAAGCTCTATCGAGCT-
1 AAACAGTAAGCTCTATCGAACTA
* *
71954849 AAACAGTAAGCTCCAAT-GAGCTAA
1 AAACAGTAAGCT-CTATCGAACT-A
71954873 AAACAGTAAGCTCT
1 AAACAGTAAGCTCT
71954887 TACGAGCTGA
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
22 16 0.32
23 22 0.44
24 12 0.24
ACGTcount: A:0.41, C:0.19, G:0.17, T:0.23
Consensus pattern (23 bp):
AAACAGTAAGCTCTATCGAACTA
Found at i:71954857 original size:45 final size:46
Alignment explanation
Indices: 71954803--71954894 Score: 116
Period size: 45 Copynumber: 2.0 Consensus size: 46
71954793 CCTAAGTTGA
* * * *
71954803 TAAACAGTAAGTTCTATTGAACT-AAAACGGTAAGCTC-TATCGAGC
1 TAAACAGTAAGCTCCAATGAACTAAAAACAGTAAGCTCTTA-CGAGC
*
71954848 TAAACAGTAAGCTCCAATGAGCTAAAAACAGTAAGCTCTTACGAGC
1 TAAACAGTAAGCTCCAATGAACTAAAAACAGTAAGCTCTTACGAGC
71954894 T
1 T
71954895 GATATATTGG
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
45 19 0.47
46 19 0.47
47 2 0.05
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (46 bp):
TAAACAGTAAGCTCCAATGAACTAAAAACAGTAAGCTCTTACGAGC
Found at i:71954869 original size:22 final size:23
Alignment explanation
Indices: 71954804--71954885 Score: 78
Period size: 22 Copynumber: 3.6 Consensus size: 23
71954794 CTAAGTTGAT
* * * *
71954804 AAACAGTAAGTTCTATTGAACTA
1 AAACAGTAAGCTCCAATGAGCTA
* *
71954827 AAACGGTAAGCT-CTATCGAGCT-
1 AAACAGTAAGCTCCAAT-GAGCTA
71954849 AAACAGTAAGCTCCAATGAGCTAA
1 AAACAGTAAGCTCCAATGAGCT-A
71954873 AAACAGTAAGCTC
1 AAACAGTAAGCTC
71954886 TTACGAGCTG
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
22 17 0.36
23 17 0.36
24 13 0.28
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (23 bp):
AAACAGTAAGCTCCAATGAGCTA
Found at i:71962626 original size:40 final size:40
Alignment explanation
Indices: 71962489--71962645 Score: 176
Period size: 40 Copynumber: 3.9 Consensus size: 40
71962479 GCTATTCGTT
* *
71962489 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCA
** * *
71962529 CAAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTAGCA
1 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
*
71962569 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
* * *
71962609 CGAATGCCTTCGCATCTTAGTCCAGATTTAGTAACTC
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTC
71962646 ACACGAATTG
Statistics
Matches: 104, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
39 3 0.03
40 99 0.95
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
Found at i:71964188 original size:28 final size:27
Alignment explanation
Indices: 71964122--71964191 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
71964112 ATAGTGAGTC
* *
71964122 CGCACACTTAGTGATATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAACT
* * *
71964149 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATC-AACT
71964177 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71964192 GTACAAATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 20 0.56
28 16 0.44
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATAAAATCAACT
Found at i:71964264 original size:42 final size:42
Alignment explanation
Indices: 71964200--71964306 Score: 205
Period size: 42 Copynumber: 2.5 Consensus size: 42
71964190 CTGTACAAAT
*
71964200 TTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
71964242 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
71964284 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
71964307 GAAATCAACA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.22, C:0.34, G:0.14, T:0.30
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:71978438 original size:27 final size:27
Alignment explanation
Indices: 71978408--71979056 Score: 741
Period size: 27 Copynumber: 24.0 Consensus size: 27
71978398 AAAGTACTCC
71978408 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
71978435 CGATTTACAGAATTATCGTTTTACTCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** * *
71978462 CAATTTTTAAAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
71978489 CGATATATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
71978516 C-AGTTTACAGAATTACCATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
71978543 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
71978570 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
71978597 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** * *
71978624 CAATTTGTAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
71978651 C-AGTTTACAGAATTACCGTTTTATCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
71978678 CAATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
71978705 CGATTTACAAAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
71978732 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
71978759 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** * **
71978786 CAATTTGTAAAATTATTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
71978813 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
71978840 C-AGTTTACAGAATTACCATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
71978867 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
71978894 CAATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
71978921 CGATTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
71978948 CGATTTGTAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
71978975 CGATTTATAAAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
71979002 CGGTTTACAAAATTATCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
71979029 CAATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
71979056 C
1 C
71979057 AATTGTGAAA
Statistics
Matches: 530, Mismatches: 82, Indels: 20
0.84 0.13 0.03
Matches are distributed among these distances:
26 5 0.01
27 520 0.98
28 5 0.01
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:71978449 original size:54 final size:54
Alignment explanation
Indices: 71978410--71979060 Score: 818
Period size: 54 Copynumber: 12.1 Consensus size: 54
71978400 AGTACTCCCG
* * *
71978410 ATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTATCGTTTTACTCTCA
1 ATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA
** * * * *
71978464 ATTTTTAAAATTACCATTTTACCCTCGATATATAGAATTACTGTTTTACCCTCA
1 ATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA
* *
71978518 GTTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCA
1 ATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA
* *
71978572 GTTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA
1 ATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA
** * ** *
71978626 ATTTGTAAAATTACTGTTTTACCCTC-AGTTTACAGAATTACCGTTTTATCCTCA
1 ATTTACAGAATTACCATTTTACCCTCGA-TTTACAGAATTACCGTTTTACCCTCA
* **
71978680 ATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCA
1 ATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA
* *
71978734 GTTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA
1 ATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA
** * ***
71978788 ATTTGTAAAATTATTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA
1 ATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA
* *
71978842 GTTTACAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCA
1 ATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA
** ** *
71978896 ATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCG
1 ATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA
** * * * * * * * *
71978950 ATTTGTAAAATTATCGTTTTACCCTCGATTTATAAAATTACTGGTTTACCCTCG
1 ATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA
* * * * *
71979004 GTTTACAAAATTATCATTTTACCCTCAATTTACAGAATTACTGTTTTACCCTCA
1 ATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA
71979058 ATT
1 ATT
71979061 GTGAAATTAC
Statistics
Matches: 516, Mismatches: 79, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
53 1 0.00
54 514 1.00
55 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (54 bp):
ATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA
Found at i:71979095 original size:27 final size:27
Alignment explanation
Indices: 71979065--71979261 Score: 223
Period size: 27 Copynumber: 7.3 Consensus size: 27
71979055 TCAATTGTGA
*
71979065 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
71979092 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * *
71979119 AATTACTAAAATACCCTTATAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
71979146 AATTACCGAAATACCCCCGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * *
71979173 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
71979200 AAATACCAAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * ** * *
71979227 AATTACCGAGATACCTTTGTGGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
71979254 AATTACCA
1 AATTACCA
71979262 TTTTGCCCCT
Statistics
Matches: 146, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:71979133 original size:54 final size:54
Alignment explanation
Indices: 71979065--71979260 Score: 250
Period size: 54 Copynumber: 3.6 Consensus size: 54
71979055 TCAATTGTGA
* *
71979065 AATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
71979119 AATTACTAAAATACCCTTATAGGGTAGAATTACCGAAATACCCCCGTAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
71979173 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCTTGTAGGGTAG
1 AATTACT-AAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
** * * * *
71979227 AATTACCGAGATACCTTTGTGGGGTAAAATTACC
1 AATTACTAAAATACCCTTGTAGGGTAGAATTACC
71979261 ATTTTGCCCC
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 123 0.99
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:71979258 original size:81 final size:81
Alignment explanation
Indices: 71979073--71979241 Score: 266
Period size: 81 Copynumber: 2.1 Consensus size: 81
71979063 GAAATTACTA
* * *
71979073 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACTAAAATACCCTTA
1 AAATACCCCCGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAAATACCAAAATACCCTTA
71979138 TAGGGTAGAATTACCG
66 TAGGGTAGAATTACCG
* * * *
71979154 AAATACCCCCGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCTTG
1 AAATACCCCCGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAAATACCAAAATACCCTTA
71979219 TAGGGTAGAATTACCG
66 TAGGGTAGAATTACCG
*
71979235 AGATACC
1 AAATACC
71979242 TTTGTGGGGT
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.24
Consensus pattern (81 bp):
AAATACCCCCGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAAATACCAAAATACCCTTA
TAGGGTAGAATTACCG
Found at i:71979497 original size:27 final size:26
Alignment explanation
Indices: 71979459--71979513 Score: 83
Period size: 27 Copynumber: 2.1 Consensus size: 26
71979449 CGGAGGAAGC
71979459 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
* *
71979486 GTTCTGGTGGCTCTGTCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
71979512 GT
1 GT
71979514 ATTTAGTGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:71979526 original size:27 final size:26
Alignment explanation
Indices: 71979479--71979541 Score: 81
Period size: 27 Copynumber: 2.4 Consensus size: 26
71979469 CTATGCCACA
* *
71979479 AATATCTGTTCTGGTGGCTCTGTCAC
1 AATATCTGTTCTAGTGACTCTGTCAC
*
71979505 AATATCTGTATTTAGTGACTCTGTCAC
1 AATATCTGT-TCTAGTGACTCTGTCAC
*
71979532 AGTATCTGTT
1 AATATCTGTT
71979542 GACCGATCGA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 10 0.31
27 22 0.69
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (26 bp):
AATATCTGTTCTAGTGACTCTGTCAC
Found at i:71979663 original size:22 final size:22
Alignment explanation
Indices: 71979629--71979692 Score: 56
Period size: 22 Copynumber: 2.9 Consensus size: 22
71979619 CCCATTATTA
* *
71979629 ATGGCTCTATGCCAACGTAAAT
1 ATGGCTTTGTGCCAACGTAAAT
* * * *
71979651 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACGTAAAT
*
71979673 ATGGCTTCGTGCCAAACGTA
1 ATGGCTTTGTGCC-AACGTA
71979693 TTTACCTATA
Statistics
Matches: 31, Mismatches: 10, Indels: 1
0.74 0.24 0.02
Matches are distributed among these distances:
22 28 0.90
23 3 0.10
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.31
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACGTAAAT
Found at i:71979874 original size:27 final size:27
Alignment explanation
Indices: 71979852--71979920 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
71979842 TAGGTGGGTT
*
71979852 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
71979879 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
71979906 TGTCACGATATCTGT
1 TGCCACAATATCTGT
71979921 TTTGGCAGCC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 36 0.97
28 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:71980071 original size:6 final size:6
Alignment explanation
Indices: 71980062--71980199 Score: 151
Period size: 6 Copynumber: 22.8 Consensus size: 6
71980052 CCGTCACCTA
71980062 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
* * *
71980110 ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
*
71980159 ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
71980200 CATTTTGGTT
Statistics
Matches: 113, Mismatches: 8, Indels: 22
0.79 0.06 0.15
Matches are distributed among these distances:
5 8 0.07
6 96 0.85
7 7 0.06
8 2 0.02
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:71980161 original size:67 final size:67
Alignment explanation
Indices: 71980043--71980188 Score: 210
Period size: 67 Copynumber: 2.2 Consensus size: 67
71980033 TTGCATTCAC
* *
71980043 ATTCTGATTCCGTCACCTAATTCTGATTCTGATTCTGATTCTGATTCTGATTCTG-TTACTGATT
1 ATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTAATTCTGATTCTGATT-CTGATT
71980107 CTG
65 CTG
71980110 ATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTG-TTACTAATAT-TGATTCTGATTCTGAT
1 ATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATT-CTAAT-TCTGATTCTGATTCTGAT
71980173 TCTG
64 TCTG
71980177 -TTACTGATTCTG
1 ATT-CTGATTCTG
71980189 ATTTTGATTC
Statistics
Matches: 73, Mismatches: 2, Indels: 8
0.88 0.02 0.10
Matches are distributed among these distances:
66 4 0.05
67 66 0.90
68 3 0.04
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.47
Consensus pattern (67 bp):
ATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTAATTCTGATTCTGATTCTGATTC
TG
Found at i:71980204 original size:12 final size:12
Alignment explanation
Indices: 71980126--71980220 Score: 59
Period size: 12 Copynumber: 7.9 Consensus size: 12
71980116 ATTCTGTCAC
*
71980126 CTAATTCTGATT
1 CTAATTTTGATT
* *
71980138 CTGATTCTG-TT
1 CTAATTTTGATT
*
71980149 ACTAATATTGATT
1 -CTAATTTTGATT
* *
71980162 CTGATTCTGATT
1 CTAATTTTGATT
* *
71980174 CT-GTTACTGATT
1 CTAATT-TTGATT
*
71980186 CTGATTTTGATT
1 CTAATTTTGATT
* *
71980198 CTCATTTTGGTT
1 CTAATTTTGATT
71980210 CTAATTTTGAT
1 CTAATTTTGAT
71980221 AATGTTTCTT
Statistics
Matches: 65, Mismatches: 14, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
11 4 0.06
12 57 0.88
13 4 0.06
ACGTcount: A:0.20, C:0.14, G:0.14, T:0.53
Consensus pattern (12 bp):
CTAATTTTGATT
Found at i:71983534 original size:28 final size:29
Alignment explanation
Indices: 71983501--71983615 Score: 146
Period size: 29 Copynumber: 4.0 Consensus size: 29
71983491 TACCTGTATC
* *
71983501 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
71983529 GGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
71983558 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
71983587 TGGCCCATTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
71983615 T
1 T
71983616 TCACACATGC
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 26 0.34
29 49 0.64
30 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.26
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:71993215 original size:55 final size:54
Alignment explanation
Indices: 71993072--71993278 Score: 254
Period size: 53 Copynumber: 3.8 Consensus size: 54
71993062 TTTCCTTTTT
* *
71993072 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
71993125 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * *
71993179 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
71993234 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
71993279 AAACCCTAAT
Statistics
Matches: 127, Mismatches: 25, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
53 47 0.37
54 38 0.30
55 42 0.33
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:72000709 original size:55 final size:54
Alignment explanation
Indices: 72000570--72000765 Score: 223
Period size: 53 Copynumber: 3.6 Consensus size: 54
72000560 TTTCCTTTTT
* * * *
72000570 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
* * * *
72000623 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
** * * * * * *
72000677 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCTTTTCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
*
72000732 AACTTACCAATGCCATGCCTTGGCATGGTCTTAC
1 AACTTACCAATGCCATGCCTTGACATGGTCTTAC
72000766 TTAGTATCCT
Statistics
Matches: 118, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
53 46 0.39
54 30 0.25
55 42 0.36
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
Found at i:72008113 original size:53 final size:54
Alignment explanation
Indices: 72008044--72008250 Score: 177
Period size: 53 Copynumber: 3.8 Consensus size: 54
72008034 TTTCCTTCTT
* * *
72008044 AACTTACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * **
72008097 AACTCACCATTGCCATGCCTTGGCATGGTCGTACATGGGATATTTGCCTTATAG
1 AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * ** * * * * *
72008151 TAGTTTATCAACGCCCTGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
72008206 AGCTTACCAATT-CCATGCCTT-AGCATGGTCTTACTTGGTATCCTT
1 AACTTACC-ATTGCCATGCCTTGA-CATGGTCTTACATGGTATCCTT
72008251 AAACCCTAAT
Statistics
Matches: 116, Mismatches: 34, Indels: 7
0.74 0.22 0.04
Matches are distributed among these distances:
53 44 0.38
54 33 0.28
55 39 0.34
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (54 bp):
AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:72009978 original size:40 final size:40
Alignment explanation
Indices: 72009941--72010166 Score: 192
Period size: 40 Copynumber: 5.7 Consensus size: 40
72009931 GCTACTCGTT
*
72009941 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
* *
72009981 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* ** *
72010021 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAACTCGCA
* * **
72010061 CGAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAACTCGCA
* * ** * * *
72010101 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAAC-TCGCA
* *
72010142 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAACCCGGA
72010167 CATCATTCGA
Statistics
Matches: 168, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
39 3 0.02
40 153 0.91
41 12 0.07
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:72010053 original size:80 final size:81
Alignment explanation
Indices: 72009941--72010159 Score: 279
Period size: 80 Copynumber: 2.7 Consensus size: 81
72009931 GCTACTCGTT
* *
72009941 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACT-
1 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACTC
72010003 CGGATTTAGTAACTCGCA
64 CGGATTTAGTAACTCGCA
* * *
72010021 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCACACGAATGCCTTC-GGATCTT-AGTCC
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACTCC
72010084 GGATTTAGTAACTCGCA
65 GGATTTAGTAACTCGCA
* * * *
72010101 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTA
72010160 GCCCGGACAT
Statistics
Matches: 121, Mismatches: 11, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
79 8 0.07
80 102 0.84
81 11 0.09
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (81 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACTCCG
GATTTAGTAACTCGCA
Found at i:72010150 original size:120 final size:120
Alignment explanation
Indices: 72009943--72010166 Score: 280
Period size: 120 Copynumber: 1.9 Consensus size: 120
72009933 TACTCGTTCA
72009943 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGAT
1 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGAT
* * *
72010008 TTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCACACG
66 ATAGTAACTAGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCACACG
* * * *
72010063 AATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCTT-AGTCC
1 AATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACT-C
*
72010124 GGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
62 GGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAGCCCGGA
72010167 CATCATTCGA
Statistics
Matches: 90, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
119 8 0.09
120 69 0.77
121 13 0.14
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGAT
ATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACG
Found at i:72010881 original size:2 final size:2
Alignment explanation
Indices: 72010874--72010899 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
72010864 ATGTGCAAAC
72010874 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
72010900 GTGCAAGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72013667 original size:29 final size:29
Alignment explanation
Indices: 72013635--72013737 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
72013625 ATGACGAGAT
* *
72013635 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
72013664 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
72013693 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
72013722 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
72013738 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:72017564 original size:29 final size:29
Alignment explanation
Indices: 72017531--72017662 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
72017521 GTGACGAGAT
*
72017531 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
72017560 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
72017589 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
72017618 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
72017647 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
72017663 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:72026432 original size:29 final size:29
Alignment explanation
Indices: 72026400--72026502 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
72026390 ATGACGAGAT
* *
72026400 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
72026429 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
72026458 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
72026487 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
72026503 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:72034046 original size:40 final size:41
Alignment explanation
Indices: 72034009--72034231 Score: 282
Period size: 40 Copynumber: 5.6 Consensus size: 41
72033999 GCTACTCGTT
*
72034009 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATT-TAGTAACTCGCA
*
72034049 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
72034089 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* *
72034129 CGAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * * *
72034169 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAAC-TCGCA
72034210 CAAA-GCCTTCGGGA-CTTAGCCC
1 CAAATGCCTTCGGGATCTTAGCCC
72034232 AGACATCATT
Statistics
Matches: 169, Mismatches: 10, Indels: 8
0.90 0.05 0.04
Matches are distributed among these distances:
39 3 0.02
40 154 0.91
41 12 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:72038786 original size:2 final size:2
Alignment explanation
Indices: 72038779--72038813 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
72038769 TAGTTGAACC
72038779 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
72038814 TTATGCGCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:72040612 original size:39 final size:39
Alignment explanation
Indices: 72040568--72040724 Score: 215
Period size: 39 Copynumber: 4.0 Consensus size: 39
72040558 GATGTGTATG
*
72040568 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGGAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
72040607 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
* * * *
72040646 ATTGTGTGAGTTATGATATCCGGGCTAAGCCCGAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
* * * * *
72040685 ATTGTGCGAGTTGTGATACCCGGGTTAAGTCCCAAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCA
72040725 TTTGTGCGGG
Statistics
Matches: 107, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 98 0.92
40 9 0.08
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (39 bp):
AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
Found at i:72040747 original size:78 final size:78
Alignment explanation
Indices: 72040587--72040762 Score: 201
Period size: 78 Copynumber: 2.2 Consensus size: 78
72040577 ATTGTGATAT
* * *
72040587 CCGGGCTAAGCCCGGAGGCAAATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATACCCGGGCTAAGCCCAAAGGCAATTGTG
* ** * *
72040652 TGAGTTATGATAT
66 CGAGTTACCACAA
* * * *
72040665 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATACCCGGGTTAAGTCCCAAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATACCCGGGCTAAG-CCCAAAGGCAATTGT
*
72040730 GCGGGTT-CCACAA
65 GCGAGTTACCACAA
*
72040743 CCGGGCTATGTCCCGAAGGC
1 CCGGGCTAAG-CCCGAAGGC
72040763 GTTTGAACGA
Statistics
Matches: 82, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
78 55 0.67
79 27 0.33
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.22
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATACCCGGGCTAAGCCCAAAGGCAATTGTG
CGAGTTACCACAA
Found at i:72048667 original size:39 final size:39
Alignment explanation
Indices: 72048623--72048779 Score: 224
Period size: 39 Copynumber: 4.0 Consensus size: 39
72048613 GATGTGTATG
72048623 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
* *
72048662 AATGTGCGAATTGTGATATCCGGGTTAAGCCCTAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
* * *
72048701 ATTGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
* * * *
72048740 ATTGTGCGAGTTGTGATACCCGGGTTAAGTCCCGAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCA
72048780 TTTGTGCGGG
Statistics
Matches: 107, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 97 0.91
40 10 0.09
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.24
Consensus pattern (39 bp):
AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
Found at i:72048754 original size:78 final size:79
Alignment explanation
Indices: 72048625--72048787 Score: 256
Period size: 78 Copynumber: 2.1 Consensus size: 79
72048615 TGTGTATGAA
* *
72048625 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATATCCGGGTTAA
1 TGTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATACCCGGGTTAA
*
72048690 G-CCCTAAGGCAAT
66 GTCCCGAAGGCAAT
* * *
72048703 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATACCCGGGTTAA
1 TGTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATACCCGGGTTAA
*
72048768 GTCCCGAAGGCATT
66 GTCCCGAAGGCAAT
72048782 TGTGCG
1 TGTGCG
72048788 GGTTCCACAA
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
78 61 0.79
79 16 0.21
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (79 bp):
TGTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATACCCGGGTTAA
GTCCCGAAGGCAAT
Found at i:72048802 original size:78 final size:78
Alignment explanation
Indices: 72048642--72048817 Score: 228
Period size: 78 Copynumber: 2.2 Consensus size: 78
72048632 ATTGTGATAT
* *
72048642 CCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATATCCGGGTTAAGCCCTAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATACCCGGGTTAAGCCCGAAGGCAATTGTG
** * *
72048707 CGAGTTATGATAT
66 CGAGTTACCACAA
* * *
72048720 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATACCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATACCCGGGTTAAG-CCCGAAGGCAATTGT
*
72048785 GCGGGTT-CCACAA
65 GCGAGTTACCACAA
*
72048798 CCGGGCTATGTCCCGAAGGC
1 CCGGGCTAAG-CCCGAAGGC
72048818 GTTTGAACGA
Statistics
Matches: 85, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
78 57 0.67
79 28 0.33
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.22
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATACCCGGGTTAAGCCCGAAGGCAATTGTG
CGAGTTACCACAA
Found at i:72050274 original size:29 final size:29
Alignment explanation
Indices: 72050241--72050300 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
72050231 TATATTTGGT
*
72050241 TAATACAATGAAATAAATGACCATATGAA
1 TAATACAATGAAATAAATGACCATATAAA
*
72050270 TAATACAATGAAATAGATGACCATATAAA
1 TAATACAATGAAATAAATGACCATATAAA
72050299 TA
1 TA
72050301 GTGGATTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.55, C:0.10, G:0.10, T:0.25
Consensus pattern (29 bp):
TAATACAATGAAATAAATGACCATATAAA
Found at i:72055607 original size:23 final size:23
Alignment explanation
Indices: 72055581--72055657 Score: 104
Period size: 22 Copynumber: 3.4 Consensus size: 23
72055571 GTTGATAAAT
72055581 AGTAAGCTCTATTGAGCTGAAAC
1 AGTAAGCTCTATTGAGCTGAAAC
* * *
72055604 AGTAAACTCTATCGAACTG-AAC
1 AGTAAGCTCTATTGAGCTGAAAC
*
72055626 AGTAAGCTCCATTGAGCTGAAA-
1 AGTAAGCTCTATTGAGCTGAAAC
72055648 AGTAAGCTCT
1 AGTAAGCTCT
72055658 TACGAGTTGA
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
22 27 0.60
23 18 0.40
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.25
Consensus pattern (23 bp):
AGTAAGCTCTATTGAGCTGAAAC
Found at i:72055680 original size:24 final size:24
Alignment explanation
Indices: 72055581--72055693 Score: 82
Period size: 22 Copynumber: 4.9 Consensus size: 24
72055571 GTTGATAAAT
*
72055581 AGTAAGCTC-TATTGAGCTGA-AAC
1 AGTAAGCTCTTA-CGAGCTGATAAC
* *
72055604 AGTAAACTC-TATCGAACTG--AAC
1 AGTAAGCTCTTA-CGAGCTGATAAC
72055626 AGTAAGCTCCATT--GAGCTGA-AA-
1 AGTAAGCT-C-TTACGAGCTGATAAC
*
72055648 AGTAAGCTCTTACGAGTTGATAAC
1 AGTAAGCTCTTACGAGCTGATAAC
*
72055672 AGTATGCTCTTACGAGCTGATA
1 AGTAAGCTCTTACGAGCTGATA
72055694 TATCGGTAAG
Statistics
Matches: 74, Mismatches: 8, Indels: 15
0.76 0.08 0.15
Matches are distributed among these distances:
20 2 0.03
21 1 0.01
22 29 0.39
23 21 0.28
24 20 0.27
25 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.27
Consensus pattern (24 bp):
AGTAAGCTCTTACGAGCTGATAAC
Found at i:72059424 original size:20 final size:20
Alignment explanation
Indices: 72059401--72059452 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
72059391 TCCTATTCGT
72059401 ACTTCGATACCCCTAATTGC
1 ACTTCGATACCCCTAATTGC
* * *
72059421 ACTTGCG-TGCCCCTATTTGT
1 ACTT-CGATACCCCTAATTGC
72059441 ACTTCGATACCC
1 ACTTCGATACCC
72059453 TGAATGCACA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 2 0.08
20 22 0.85
21 2 0.08
ACGTcount: A:0.19, C:0.35, G:0.13, T:0.33
Consensus pattern (20 bp):
ACTTCGATACCCCTAATTGC
Found at i:72059472 original size:39 final size:40
Alignment explanation
Indices: 72059386--72059478 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 40
72059376 TTTGTGCTTA
* *
72059386 TGTGCTCCTATTCGTACTTCGATACCCCTAATTGCACTTG
1 TGTGCCCCTATTTGTACTTCGATACCCCTAATTGCACTTG
*
72059426 CGTGCCCCTATTTGTACTTCGATA-CCCTGAA-TGCACATT-
1 TGTGCCCCTATTTGTACTTCGATACCCCT-AATTGCAC-TTG
*
72059465 TGTGCCCCTGTTTG
1 TGTGCCCCTATTTG
72059479 CCCTTTGGTG
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
39 21 0.46
40 25 0.54
ACGTcount: A:0.16, C:0.30, G:0.17, T:0.37
Consensus pattern (40 bp):
TGTGCCCCTATTTGTACTTCGATACCCCTAATTGCACTTG
Found at i:72059489 original size:20 final size:20
Alignment explanation
Indices: 72059450--72059533 Score: 80
Period size: 20 Copynumber: 4.2 Consensus size: 20
72059440 TACTTCGATA
*
72059450 CCCTGAATGCACATTT-GTGC
1 CCCTGATTGCAC-TTTGGTGC
* *
72059470 CCCTGTTTGCCCTTTGGTGC
1 CCCTGATTGCACTTTGGTGC
* * * *
72059490 CCCTGGTCGCACATTCGTGC
1 CCCTGATTGCACTTTGGTGC
*
72059510 TCCTGATTGCACTTTGGTGC
1 CCCTGATTGCACTTTGGTGC
72059530 CCCT
1 CCCT
72059534 ATTATCCATC
Statistics
Matches: 49, Mismatches: 14, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
19 3 0.06
20 46 0.94
ACGTcount: A:0.10, C:0.35, G:0.23, T:0.33
Consensus pattern (20 bp):
CCCTGATTGCACTTTGGTGC
Found at i:72059502 original size:40 final size:40
Alignment explanation
Indices: 72059458--72059533 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
72059448 TACCCTGAAT
* * *
72059458 GCACATTTGTGCCCCTGTTTGCCCTTTGGTGCCCCTGGTC
1 GCACATTCGTGCCCCTGATTGCACTTTGGTGCCCCTGGTC
*
72059498 GCACATTCGTGCTCCTGATTGCACTTTGGTGCCCCT
1 GCACATTCGTGCCCCTGATTGCACTTTGGTGCCCCT
72059534 ATTATCCATC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.08, C:0.34, G:0.24, T:0.34
Consensus pattern (40 bp):
GCACATTCGTGCCCCTGATTGCACTTTGGTGCCCCTGGTC
Found at i:72062202 original size:42 final size:42
Alignment explanation
Indices: 72062089--72062250 Score: 168
Period size: 42 Copynumber: 3.8 Consensus size: 42
72062079 TACCGTACCA
* * * *
72062089 ATGCCATATCCCAGATATGGTCTTACATGTAA-TCTCGTATCG
1 ATGCCATATCCCAGATATAGTCTTACACG-AAGTCTCATATTG
* * *
72062131 ATGCCAATAGCCCAGCTATGGAT-TTACACGAAGTCTCATATTG
1 ATGCC-ATATCCCAGATATAG-TCTTACACGAAGTCTCATATTG
* * *
72062174 ATGCCATATCCCAAATAT-GTTCTTACACGTAGTCTCATAGTG
1 ATGCCATATCCCAGATATAG-TCTTACACGAAGTCTCATATTG
*
72062216 ATGCCATATCCCAGATATAGTCTTACACGTAGTCT
1 ATGCCATATCCCAGATATAGTCTTACACGAAGTCT
72062251 TAGTAACCCT
Statistics
Matches: 103, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
41 2 0.02
42 67 0.65
43 33 0.32
44 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATAGTCTTACACGAAGTCTCATATTG
Found at i:72065089 original size:19 final size:20
Alignment explanation
Indices: 72065043--72065090 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
72065033 CTTTGGCCGA
72065043 ATATACATTTTTCATATATAC
1 ATATA-ATTTTTCATATATAC
*
72065064 ATTTAATTTTTCAT-T-TAC
1 ATATAATTTTTCATATATAC
72065082 ATCATAATT
1 AT-ATAATT
72065091 GATTTGCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 5 0.21
19 6 0.25
20 9 0.38
21 4 0.17
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.52
Consensus pattern (20 bp):
ATATAATTTTTCATATATAC
Found at i:72065341 original size:43 final size:44
Alignment explanation
Indices: 72065258--72065371 Score: 133
Period size: 43 Copynumber: 2.6 Consensus size: 44
72065248 ATATCGTACA
* * *
72065258 ATGCCAACGTCCCAGACGTGGTCTTACATGCTATCTC-ATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGCTACCACAATATCG
** *
72065301 ATGCCATTGTCCCAGACATGGTCTTACACG-TAACCACATATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGCT-ACCACA-ATATCG
*
72065346 ATGCCAACATCCCAGACGTGGTCTTA
1 ATGCCAACGTCCCAGACGTGGTCTTA
72065372 TATGAGAACA
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
42 1 0.02
43 29 0.50
45 28 0.48
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGCTACCACAATATCG
Found at i:72065384 original size:45 final size:44
Alignment explanation
Indices: 72065258--72065386 Score: 127
Period size: 45 Copynumber: 2.9 Consensus size: 44
72065248 ATATCGTACA
** *
72065258 ATGCCAACGTCCCAGACGTGGTCTTACATGCTA-TC-TCATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAACACAT-ATATCG
** * * *
72065301 ATGCCATTGTCCCAGACATGGTCTTACACGTAACCACATATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATG-AAACACATATATCG
* *
72065346 ATGCCAACATCCCAGACGTGGTCTTATATGAGAACACATAT
1 ATGCCAACGTCCCAGACGTGGTCTTACATGA-AACACATAT
72065387 TAGAAATCCT
Statistics
Matches: 67, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
43 26 0.39
44 1 0.01
45 39 0.58
46 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAACACATATATCG
Found at i:72066129 original size:18 final size:19
Alignment explanation
Indices: 72066106--72066145 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
72066096 ACTGCAACAA
*
72066106 TATTAAAAA-TGTAAAAAT
1 TATTAAAAACTGAAAAAAT
72066124 TATTAAAAACTGAAAAAAT
1 TATTAAAAACTGAAAAAAT
72066143 TAT
1 TAT
72066146 CGGGCCGCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.33
Consensus pattern (19 bp):
TATTAAAAACTGAAAAAAT
Found at i:72068569 original size:29 final size:29
Alignment explanation
Indices: 72068527--72068585 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
72068517 AAAGCAAACA
*
72068527 AAGTCTTTCTACTCAATGCATCTGCGACT
1 AAGTCTTTCTACTCAACGCATCTGCGACT
*
72068556 AAGTCTTTCTACTCAACGCATCTGTGACT
1 AAGTCTTTCTACTCAACGCATCTGCGACT
72068585 A
1 A
72068586 CATTTTCCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.34
Consensus pattern (29 bp):
AAGTCTTTCTACTCAACGCATCTGCGACT
Found at i:72070762 original size:43 final size:43
Alignment explanation
Indices: 72070663--72070825 Score: 127
Period size: 43 Copynumber: 3.8 Consensus size: 43
72070653 ATCCAGATGA
* * * *
72070663 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGT
1 GATTACATGTAAGACCATGTCTGAGACATTGGCATCGTAATGC
** *
72070706 GATTATGTCTAAGACCATGTCTGAGACATTGGCATCGTTAAT-C
1 GATTACATGTAAGACCATGTCTGAGACATTGGCATCG-TAATGC
* * * * *
72070749 GATTACATGTAAGACCCTG-CTTGGGATAGTGGCATCG-ATATGT
1 GATTACATGTAAGACCATGTC-TGAGACATTGGCATCGTA-ATGC
* * * *
72070792 GATAACATGTAAAACCATATCTGAGATA-TGGCAT
1 GATTACATGTAAGACCATGTCTGAGACATTGGCAT
72070826 TGTATGAGCT
Statistics
Matches: 95, Mismatches: 20, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
41 1 0.01
42 9 0.09
43 81 0.85
44 4 0.04
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.31
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGAGACATTGGCATCGTAATGC
Found at i:72076265 original size:33 final size:34
Alignment explanation
Indices: 72076219--72076308 Score: 98
Period size: 33 Copynumber: 2.7 Consensus size: 34
72076209 TCGGGGCTTA
72076219 AGCCCA-TATCAGTAGCAATATCAGTGT-GGCCAT
1 AGCCCATTA-CAGTAGCAATATCAGTGTGGGCCAT
* * * *
72076252 AGCCCATTACAGTAGTAGTAACAGTGTGGGCCTT
1 AGCCCATTACAGTAGCAATATCAGTGTGGGCCAT
72076286 AGCCCAATT-CAGTA-CAATATCAG
1 AGCCC-ATTACAGTAGCAATATCAG
72076309 ACATGCATAA
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
33 27 0.57
34 17 0.36
35 3 0.06
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.24
Consensus pattern (34 bp):
AGCCCATTACAGTAGCAATATCAGTGTGGGCCAT
Found at i:72083493 original size:30 final size:30
Alignment explanation
Indices: 72083457--72083557 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
72083447 GACAAGATTG
* * *
72083457 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
72083487 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
72083515 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
72083544 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72083558 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:72083569 original size:29 final size:28
Alignment explanation
Indices: 72083486--72083561 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
72083476 AAAATTGTAC
* *
72083486 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
72083514 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
72083543 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
72083562 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:72091381 original size:30 final size:30
Alignment explanation
Indices: 72091345--72091445 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
72091335 GACAAGATTG
* * *
72091345 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
72091375 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
72091403 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
72091432 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72091446 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:72091457 original size:29 final size:28
Alignment explanation
Indices: 72091374--72091449 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
72091364 AAAATTGTAC
* *
72091374 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
72091402 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
72091431 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
72091450 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:72100883 original size:43 final size:43
Alignment explanation
Indices: 72100743--72100883 Score: 119
Period size: 43 Copynumber: 3.3 Consensus size: 43
72100733 ACTGTGCTTG
* *
72100743 GGACACTGGCATCGAT-TTGAAATTTACGTGTAAGACCATGTCTA
1 GGACATTGGCATCGATACTG-AA-TTACGTGTAAGACCATGTCTA
* ** * * *
72100787 GGACATCT-GCATCG-TATCT-ATTTTTGTATAAGACCCTGTCTG
1 GGACAT-TGGCATCGATA-CTGAATTACGTGTAAGACCATGTCTA
** *
72100829 GGACAGAGGCATCGATACTGAATTACATGTAAGACCATGTCTA
1 GGACATTGGCATCGATACTGAATTACGTGTAAGACCATGTCTA
72100872 GGACATTGGCAT
1 GGACATTGGCAT
72100884 TGTGCTTGTC
Statistics
Matches: 72, Mismatches: 19, Indels: 13
0.69 0.18 0.12
Matches are distributed among these distances:
42 29 0.40
43 30 0.42
44 11 0.15
45 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (43 bp):
GGACATTGGCATCGATACTGAATTACGTGTAAGACCATGTCTA
Found at i:72102169 original size:41 final size:42
Alignment explanation
Indices: 72102089--72102193 Score: 117
Period size: 41 Copynumber: 2.5 Consensus size: 42
72102079 TCTCAAACGT
* *
72102089 GGTCTTACATGCTATCTCATAT-CAATGCCACTGTACCAGACAG
1 GGTCTTACATG-TAAC-CAAATACAATGCCACTGTACCAGACAG
* * *
72102132 GGTCTTACATG-AATCAAATACAATGCCGA-TGTCCCAGACAT
1 GGTCTTACATGTAACCAAATACAATGCC-ACTGTACCAGACAG
72102173 GGTCTTACATGTAACCAAATA
1 GGTCTTACATGTAACCAAATA
72102194 TATCGATGCC
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
40 4 0.08
41 29 0.55
42 9 0.17
43 11 0.21
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (42 bp):
GGTCTTACATGTAACCAAATACAATGCCACTGTACCAGACAG
Found at i:72102212 original size:45 final size:45
Alignment explanation
Indices: 72102107--72102317 Score: 155
Period size: 45 Copynumber: 4.8 Consensus size: 45
72102097 ATGCTATCTC
* * * *
72102107 ATATCAATGCC-ACTGTACCAGACAGGGTCTTACATG-AATC-AA-
1 ATATCGATGCCAAC-GTCCCAGACATGGTCTTACATGAAAACAAAT
* * * * *
72102149 ATA-CAATGCCGATGTCCCAGACATGGTCTTACATGTAACCAAAT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACATGAAAACAAAT
* * **
72102193 ATATCGATGCCAACGTCCCAAACATGGTCTTACACGAAAACACTT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACATGAAAACAAAT
* * * * **
72102238 ATATCGATGCCAACGTCCAAAAACTTGGTCTTCCACT-AAAACACTT
1 ATATCGATGCCAACGTCC-CAGACATGGTCTTACA-TGAAAACAAAT
* * *
72102284 ATATCGATGCTAACATCCCAGACGTGGTCTTACA
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACA
72102318 CAAAAGCACA
Statistics
Matches: 139, Mismatches: 23, Indels: 11
0.80 0.13 0.06
Matches are distributed among these distances:
41 27 0.19
42 7 0.05
43 2 0.01
44 3 0.02
45 62 0.45
46 38 0.27
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.25
Consensus pattern (45 bp):
ATATCGATGCCAACGTCCCAGACATGGTCTTACATGAAAACAAAT
Found at i:72102284 original size:46 final size:45
Alignment explanation
Indices: 72102169--72102322 Score: 166
Period size: 45 Copynumber: 3.4 Consensus size: 45
72102159 GATGTCCCAG
* * * ** *
72102169 ACATGGTCTTACATGTAACCAAATATATCGATGCCAACGTCCCAA
1 ACATGGTCTTACACGAAAACACTTATATCGATGCCAACGTCCAAA
72102214 ACATGGTCTTACACGAAAACACTTATATCGATGCCAACGTCCAAAA
1 ACATGGTCTTACACGAAAACACTTATATCGATGCCAACGTCC-AAA
* * * * * * *
72102260 ACTTGGTCTTCCACTAAAACACTTATATCGATGCTAACATCCCAG
1 ACATGGTCTTACACGAAAACACTTATATCGATGCCAACGTCCAAA
*
72102305 ACGTGGTCTTACAC-AAAA
1 ACATGGTCTTACACGAAAA
72102323 GCACATATCA
Statistics
Matches: 93, Mismatches: 15, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
44 4 0.04
45 50 0.54
46 39 0.42
ACGTcount: A:0.36, C:0.27, G:0.13, T:0.25
Consensus pattern (45 bp):
ACATGGTCTTACACGAAAACACTTATATCGATGCCAACGTCCAAA
Found at i:72102887 original size:15 final size:15
Alignment explanation
Indices: 72102864--72102894 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
72102854 TCAAAAATTC
72102864 CAATACAAAACATAT
1 CAATACAAAACATAT
*
72102879 CAATCCAAAACATAT
1 CAATACAAAACATAT
72102894 C
1 C
72102895 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:72103258 original size:23 final size:23
Alignment explanation
Indices: 72103188--72103266 Score: 83
Period size: 23 Copynumber: 3.6 Consensus size: 23
72103178 TTACAAATAT
72103188 AACCTTTATAATTAAATAACTAA
1 AACCTTTATAATTAAATAACTAA
* * * ** *
72103211 AACATATAT-A-TCAAGGA-TAT
1 AACCTTTATAATTAAATAACTAA
72103231 AACCTTTATAATTAAATAACTAA
1 AACCTTTATAATTAAATAACTAA
72103254 AACCTTTATAATT
1 AACCTTTATAATT
72103267 TAACCACCAA
Statistics
Matches: 41, Mismatches: 12, Indels: 6
0.69 0.20 0.10
Matches are distributed among these distances:
20 9 0.22
21 5 0.12
22 5 0.12
23 22 0.54
ACGTcount: A:0.49, C:0.13, G:0.03, T:0.35
Consensus pattern (23 bp):
AACCTTTATAATTAAATAACTAA
Found at i:72105957 original size:14 final size:15
Alignment explanation
Indices: 72105932--72105960 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
72105922 TTATTTTTTC
72105932 ATTTTCTCTTCTTCT
1 ATTTTCTCTTCTTCT
72105947 ATTTT-TCTTCTTCT
1 ATTTTCTCTTCTTCT
72105961 TGTTTTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.07, C:0.24, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTCTCTTCTTCT
Found at i:72107489 original size:60 final size:60
Alignment explanation
Indices: 72107413--72107549 Score: 165
Period size: 60 Copynumber: 2.3 Consensus size: 60
72107403 AACTATGTTA
* *
72107413 ATATGGG-TAAGGCCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATTGATGCTG
1 ATATGGGCTAAGGCCCAATATACTCT-GA-TATGTAA-AGGGCTACGGCCCAGATTAATACTG
* * *
72107473 ATATGGGCT-AGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAAGGCCCAATATACTCTGATA-TGTAAAGGGCTACGGCCCAGATTAATACTG
72107533 ATATGGGCTAAGGCCCA
1 ATATGGGCTAAGGCCCA
72107550 GTTAACACTG
Statistics
Matches: 67, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
59 1 0.01
60 50 0.75
61 16 0.24
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (60 bp):
ATATGGGCTAAGGCCCAATATACTCTGATATGTAAAGGGCTACGGCCCAGATTAATACTG
Found at i:72110781 original size:43 final size:43
Alignment explanation
Indices: 72110731--72110928 Score: 288
Period size: 43 Copynumber: 4.6 Consensus size: 43
72110721 CCGGCATTAC
*
72110731 GCCTGCTAGGCACGAAAGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
72110774 GCTTGCTAGGCACGAAGGCCAGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * * * *
72110817 GCCTACTAGGCATGAAGGCCCCAATACACATCCCCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* **
72110860 GCCTGCTAGGCACGAAGGCCCGAATACACATCACAGGCATTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
72110903 GCCTGCTAGGCACGAAGGCCTGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
72110929 TAATACCAGC
Statistics
Matches: 138, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 138 1.00
ACGTcount: A:0.31, C:0.32, G:0.24, T:0.13
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:72116218 original size:31 final size:31
Alignment explanation
Indices: 72116180--72116258 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
72116170 TTTAACGGTT
72116180 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
72116211 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* **
72116242 ATTGGGCTAAAGCCTTT
1 ACTGGGCCGAAGCCTTT
72116259 ACTGTAAACG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:72116329 original size:42 final size:42
Alignment explanation
Indices: 72116282--72116374 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
72116272 TGGCCCTTAG
* ** *
72116282 GCCCATTTCAATATCACATGTAATGTCAAAGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAAAGAATGTATGCAA
* *
72116324 GCCCATTTCAATATCACATGAAATACCGATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAAAGAATGTATGCAA
72116366 GCCCATTTC
1 GCCCATTTC
72116375 GGAGACTACT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAAAGAATGTATGCAA
Found at i:72116546 original size:25 final size:26
Alignment explanation
Indices: 72116517--72116665 Score: 221
Period size: 26 Copynumber: 5.8 Consensus size: 26
72116507 CCTCTTTAAT
72116517 AACTGGGGCA-AAGCCCTTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCGATA
**
72116542 AACTGGGGCA-AAGCCCTTTTTAATA
1 AACTGGGGCATAAGCCCTTTTCGATA
*
72116567 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGATA
*
72116593 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGATA
* *
72116619 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGATA
*
72116645 AATTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
72116666 GCACTTCCTC
Statistics
Matches: 111, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
25 33 0.30
26 78 0.70
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGATA
Found at i:72116629 original size:52 final size:52
Alignment explanation
Indices: 72116517--72116665 Score: 248
Period size: 52 Copynumber: 2.9 Consensus size: 52
72116507 CCTCTTTAAT
* *
72116517 AACTGGGGCA-AAGCCCTTTTCGATAAACTGGGGCA-AAGCCCTTTTTAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
72116567 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
* *
72116619 AACTAGGGCATAAGCCCTTTTCGGTAAATTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
72116666 GCACTTCCTC
Statistics
Matches: 93, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
50 10 0.11
51 24 0.26
52 59 0.63
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:72117616 original size:27 final size:27
Alignment explanation
Indices: 72117563--72117921 Score: 251
Period size: 27 Copynumber: 13.3 Consensus size: 27
72117553 TTTCATCCTA
* * * * *
72117563 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
** * *
72117590 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *** *
72117617 CAATGGTATTTCCATAATTTTTAGAAAGT
1 CAAGGGTATTTTGGTAA-TTTTATAAA-T
*
72117646 CAAGGGTATTTCT-GTAACTTTATAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAT
*
72117673 CAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * * * * *
72117700 TAAAGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
72117727 CAATGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
72117753 CTAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
*** * *
72117780 TGCGGGTATTTCGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * * * *
72117806 CTAGGGGTATTTTAGCAATTTTACAGA-
1 C-AAGGGTATTTTGGTAATTTTATAAAT
* *
72117833 CTAGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTA-TAAAT
* *
72117860 CAAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
72117887 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
*
72117914 CGAGGGTA
1 CAAGGGTA
72117922 AAACAATAAT
Statistics
Matches: 269, Mismatches: 54, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
26 45 0.17
27 197 0.73
28 14 0.05
29 13 0.05
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAT
Found at i:72117776 original size:80 final size:80
Alignment explanation
Indices: 72117646--72117907 Score: 328
Period size: 80 Copynumber: 3.3 Consensus size: 80
72117636 TTTAGAAAGT
* * * *
72117646 CAAGGGTATTTCT-GTAACTTTATAAATCAAGGGTATTTTGGTAATTTTACAAATTAAAGGTATT
1 CAAGGGTATTT-TAGTAATTTTACAAA-CTAGGGTATTTTGGTAATTTTACAAATTAAGGGTATT
*
72117710 TCGGTAATTTCACAAAC
64 TCGGTAATTTTACAAAC
* * **
72117727 CAATGGTATTTTGGTAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAATTGCGGGTATTTC
1 CAAGGGTATTTTAGTAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTC
72117792 GGTAATTTTACAAAC
66 GGTAATTTTACAAAC
* * * * ** * *
72117807 TAGGGGTATTTTAGCAATTTTACAGACTAGGGTATTTTGGTAATTTTACTGATCAAGGGTATTTT
1 CAAGGGTATTTTAGTAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTC
**
72117872 GGTAATTTTGTAAAC
66 GGTAATTTTACAAAC
72117887 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTAGTAATTTT
72117908 GTAAATCGAG
Statistics
Matches: 155, Mismatches: 25, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
80 134 0.86
81 21 0.14
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (80 bp):
CAAGGGTATTTTAGTAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTC
GGTAATTTTACAAAC
Found at i:72117894 original size:107 final size:107
Alignment explanation
Indices: 72117563--72117907 Score: 307
Period size: 107 Copynumber: 3.2 Consensus size: 107
72117553 TTTCATCCTA
* * * * * * *** *
72117563 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACTAAAGGTATTTCAGCAATTTCACAAACCAAGGGTATTT
*** * *
72117628 CCATAATTTTTAGAAAGTCAAGGGTATTTCT-GTAACTTTATAAAT
66 TGGTAA-TTTTA-CAA-TCAAGGGTATTT-TGGTAATTTTATAAAT
* * * *
72117673 CAAGGGTATTTTGGTAATTTTACAAATTAAAGGTATTTCGGTAATTTCACAAACCAATGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACTAAAGGTATTTCAGCAATTTCACAAACCAAGGGTATTT
* * *
72117738 TGGTAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAAT
66 TGGTAATTTTACAATCAAGGGTATTTTGGTAATTTTATAAAT
*** * ** * * * *
72117780 TGCGGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTAGCAATTTTACAGA-CTAGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACTAAAGGTATTTCAGCAATTTCACAAACCAAGGGTATTT
* * *
72117844 TGGTAATTTTACTGATCAAGGGTATTTTGGTAATTTTGTAAAC
66 TGGTAATTTTAC-AATCAAGGGTATTTTGGTAATTTTATAAAT
*
72117887 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
72117908 GTAAATCGAG
Statistics
Matches: 190, Mismatches: 43, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
106 22 0.12
107 103 0.54
108 2 0.01
109 5 0.03
110 58 0.31
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (107 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAAAGGTATTTCAGCAATTTCACAAACCAAGGGTATTT
TGGTAATTTTACAATCAAGGGTATTTTGGTAATTTTATAAAT
Found at i:72117920 original size:54 final size:54
Alignment explanation
Indices: 72117563--72117921 Score: 294
Period size: 54 Copynumber: 6.6 Consensus size: 54
72117553 TTTCATCCTA
* * * * ** **
72117563 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAAC
* *** * * * *
72117617 CAATGGTATTTCCATAATTTTTAGAAAGTCAAGGGTATTTCT-GTAACTTTATAAAT
1 CAAGGGTATTTTGGTAA-TTTTACAAA-TCAAGGGTATTT-TGGTAATTTTACAAAC
* * * *
72117673 CAAGGGTATTTTGGTAATTTTACAAATTAAAGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAAC
* * *
72117727 CAATGGTATTTTGGTAATTTTACAAA-CTAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAAC
*** * * * * *
72117780 TGCGGGTATTTCGGTAATTTTACAAA-CTAGGGGTATTTTAGCAATTTTACAGA-
1 CAAGGGTATTTTGGTAATTTTACAAATC-AAGGGTATTTTGGTAATTTTACAAAC
* ** **
72117833 CTAGGGTATTTTGGTAATTTTACTGATCAAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAAC
* ** *
72117887 CAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTA
72117922 AAACAATAAT
Statistics
Matches: 237, Mismatches: 61, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
53 82 0.35
54 106 0.45
55 14 0.06
56 35 0.15
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAAC
Found at i:72117931 original size:27 final size:27
Alignment explanation
Indices: 72117899--72118029 Score: 199
Period size: 27 Copynumber: 4.9 Consensus size: 27
72117889 AGGGTATTTT
* *
72117899 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* * *
72117926 AATAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
72117953 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
*
72117980 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
*
72118007 GGTAATTCTATAAATCGAGGGTA
1 AGTAATTCTATAAATCGAGGGTA
72118030 CTTTGGTAAT
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 97 1.00
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (27 bp):
AGTAATTCTATAAATCGAGGGTAAAAC
Found at i:72117932 original size:54 final size:54
Alignment explanation
Indices: 72117874--72118029 Score: 186
Period size: 54 Copynumber: 2.9 Consensus size: 54
72117864 GGTATTTTGG
* **** * *
72117874 TAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAA
1 TAATTCTGTAAACCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAA
* **
72117928 TAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGG
1 TAATTCTGTAAACCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAA
* * * *
72117982 TAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
1 TAATTCTGTAAACCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTA
72118030 CTTTGGTAAT
Statistics
Matches: 89, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 89 1.00
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (54 bp):
TAATTCTGTAAACCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAA
Found at i:72118066 original size:81 final size:81
Alignment explanation
Indices: 72117889--72118067 Score: 178
Period size: 81 Copynumber: 2.2 Consensus size: 81
72117879 TTGTAAACCA
* * * *
72117889 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAATAATTCTGTAAATCAAGGGTAAAACA
1 AGGGTATTTCAGTAATTCTATAAATCGAGGGTAAAACAATAATTCTATAAATCAAGGGTAAAACA
*
72117954 GTAATTCTATAAATCG
66 GTAATTCTACAAATCG
*** * ** * *****
72117970 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTACTTTG
1 AGGGTATTTCAGTAATTCTATAAATCGAGGGTAAAACAATAATTCTATAAATCAAGGGTAAAACA
* * *
72118035 GTAATTTTACAATTTG
66 GTAATTCTACAAATCG
72118051 AGGGTATTTCAGTAATT
1 AGGGTATTTCAGTAATT
72118068 TGGTAAACTA
Statistics
Matches: 74, Mismatches: 24, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.33
Consensus pattern (81 bp):
AGGGTATTTCAGTAATTCTATAAATCGAGGGTAAAACAATAATTCTATAAATCAAGGGTAAAACA
GTAATTCTACAAATCG
Found at i:72119989 original size:16 final size:16
Alignment explanation
Indices: 72119968--72120008 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
72119958 ACACATCACC
72119968 GGCACGAAGCCTGCTA
1 GGCACGAAGCCTGCTA
*
72119984 GGCACGAAGCCTGCTG
1 GGCACGAAGCCTGCTA
72120000 GGCACGAAG
1 GGCACGAAG
72120009 GCCCGAATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.24, C:0.29, G:0.37, T:0.10
Consensus pattern (16 bp):
GGCACGAAGCCTGCTA
Found at i:72120004 original size:59 final size:59
Alignment explanation
Indices: 72119933--72120051 Score: 211
Period size: 59 Copynumber: 2.0 Consensus size: 59
72119923 CCGGCATTAC
72119933 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAA
* * *
72119992 GCCTGCTGGGCACGAAGGCCCGAATACACATCCCCGGCACTAAGCCTGCTAGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAA
72120051 G
1 G
72120052 GCCCGAATAC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.27, C:0.34, G:0.28, T:0.11
Consensus pattern (59 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAA
Found at i:72120031 original size:43 final size:43
Alignment explanation
Indices: 72119984--72120124 Score: 214
Period size: 43 Copynumber: 3.3 Consensus size: 43
72119974 AAGCCTGCTA
* * *
72119984 GGCACGAAGCCTGCTGGGCACGAAGGCCCGAATACACATCCCC
1 GGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
72120027 GGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
1 GGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
*
72120070 GGCACTAAGCCTGCTAGGCACGAAGGCCCGAATATA-AT-ACC
1 GGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
* *
72120111 AGCACTAGGCCTGC
1 GGCACTAAGCCTGC
72120125 GGGATTTATC
Statistics
Matches: 92, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
41 15 0.16
42 2 0.02
43 75 0.82
ACGTcount: A:0.28, C:0.34, G:0.26, T:0.12
Consensus pattern (43 bp):
GGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
Found at i:72120161 original size:38 final size:38
Alignment explanation
Indices: 72120096--72120179 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
72120086 GGCACGAAGG
* * *
72120096 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
72120134 CCCGGATATTATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
72120172 CCCGAATA
1 CCCGAATA
72120180 CACATCAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.21
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:72128472 original size:15 final size:15
Alignment explanation
Indices: 72128431--72128490 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 15
72128421 TATAGATAAC
* * *
72128431 AAGAAAACCAGGATT
1 AAGAAATCCAAGATA
*
72128446 AAGAAGTCCAAGATA
1 AAGAAATCCAAGATA
* *
72128461 GATAAATCCAAGATA
1 AAGAAATCCAAGATA
72128476 AAGAAATCCAAGATA
1 AAGAAATCCAAGATA
72128491 CAATATCATA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.55, C:0.13, G:0.17, T:0.15
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:72129221 original size:27 final size:27
Alignment explanation
Indices: 72129144--72129232 Score: 144
Period size: 27 Copynumber: 3.3 Consensus size: 27
72129134 GGAAAATCAG
* *
72129144 TCATTTTACCTTACAGGGGTATTAC-A
1 TCATTTTACCCTACAGGGGTATTTCGA
72129170 GTCATTTTACCCTACAGGGGTATTTCGA
1 -TCATTTTACCCTACAGGGGTATTTCGA
72129198 TCATTTTACCCTACAGGGGTATTTCGA
1 TCATTTTACCCTACAGGGGTATTTCGA
72129225 TCATTTTA
1 TCATTTTA
72129233 TCACAACGGC
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
27 58 0.98
28 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTTCGA
Found at i:72129281 original size:27 final size:27
Alignment explanation
Indices: 72129224--72129376 Score: 170
Period size: 27 Copynumber: 5.7 Consensus size: 27
72129214 GGGTATTTCG
* *
72129224 ATCATTTTATCAC--AACGGCAAAATC
1 ATCATTTTATCACATAAGGGAAAAATC
72129249 ATCATTTTATCACATAAGGGAAAAATC
1 ATCATTTTATCACATAAGGGAAAAATC
* *
72129276 ATCATTGTATCACATAA-GGACAAAATT
1 ATCATTTTATCACATAAGGGA-AAAATC
* *
72129303 GTCATTTTATCACATAA-GGACAAAATT
1 ATCATTTTATCACATAAGGGA-AAAATC
* *
72129330 GTCATTTTATCACATAAGGGGAAAATC
1 ATCATTTTATCACATAAGGGAAAAATC
* *
72129357 GTCATTTTATCACACAAGGG
1 ATCATTTTATCACATAAGGG
72129377 TTCAGGTACG
Statistics
Matches: 115, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
25 13 0.11
26 3 0.03
27 97 0.84
28 2 0.02
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (27 bp):
ATCATTTTATCACATAAGGGAAAAATC
Found at i:72129310 original size:54 final size:54
Alignment explanation
Indices: 72129224--72129376 Score: 195
Period size: 54 Copynumber: 2.9 Consensus size: 54
72129214 GGGTATTTCG
* *
72129224 ATCATTTTATCACA-ACGGCAAAATCATCATTTTATCACATAAGGGA-AAAATC
1 ATCATTTTATCACATAAGGCAAAATCGTCATTTTATCACATAAGGGACAAAATC
* * *
72129276 ATCATTGTATCACATAAGGACAAAATTGTCATTTTATCACATAA-GGACAAAATT
1 ATCATTTTATCACATAAGG-CAAAATCGTCATTTTATCACATAAGGGACAAAATC
* * *
72129330 GTCATTTTATCACATAAGGGGAAAATCGTCATTTTATCACACAAGGG
1 ATCATTTTATCACATAA-GGCAAAATCGTCATTTTATCACATAAGGG
72129377 TTCAGGTACG
Statistics
Matches: 86, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
52 13 0.15
53 6 0.07
54 63 0.73
55 4 0.05
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (54 bp):
ATCATTTTATCACATAAGGCAAAATCGTCATTTTATCACATAAGGGACAAAATC
Found at i:72129343 original size:81 final size:79
Alignment explanation
Indices: 72129225--72129375 Score: 221
Period size: 81 Copynumber: 1.9 Consensus size: 79
72129215 GGTATTTCGA
*
72129225 TCATTTTATCACAACGGCAAAATCATCATTTTATCACATAAGGGAAAAATCATCATTGTATCACA
1 TCATTTTATCACAAAGGCAAAATCATCATTTTATCACATAAGGGAAAAATCATCATTGTATCACA
*
72129290 TAAGGACAAAATTG
66 CAAGGACAAAATTG
** * * *
72129304 TCATTTTATCACATAAGGACAAAATTGTCATTTTATCACATAAGGGGAAAATCGTCATTTTATCA
1 TCATTTTATCACA-AAGG-CAAAATCATCATTTTATCACATAAGGGAAAAATCATCATTGTATCA
72129369 CACAAGG
64 CACAAGG
72129376 GTTCAGGTAC
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
79 13 0.21
80 3 0.05
81 47 0.75
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (79 bp):
TCATTTTATCACAAAGGCAAAATCATCATTTTATCACATAAGGGAAAAATCATCATTGTATCACA
CAAGGACAAAATTG
Found at i:72141400 original size:31 final size:31
Alignment explanation
Indices: 72141362--72141427 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 31
72141352 ACATCAAAAT
*
72141362 ACATGCATGTCACACATGGGTCAAACCCTAG
1 ACATGCATATCACACATGGGTCAAACCCTAG
72141393 ACATGCATATCACACATGGGTCAAACCCTAG
1 ACATGCATATCACACATGGGTCAAACCCTAG
72141424 ACAT
1 ACAT
72141428 CAACCCCAGC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.35, C:0.29, G:0.17, T:0.20
Consensus pattern (31 bp):
ACATGCATATCACACATGGGTCAAACCCTAG
Found at i:72142338 original size:20 final size:20
Alignment explanation
Indices: 72142313--72142350 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
72142303 TTGATCCAAA
72142313 TTAGAACTTTTTCAATTTCT
1 TTAGAACTTTTTCAATTTCT
* *
72142333 TTAGAATTTTTTCCATTT
1 TTAGAACTTTTTCAATTT
72142351 TTACCTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.13, G:0.05, T:0.58
Consensus pattern (20 bp):
TTAGAACTTTTTCAATTTCT
Found at i:72143729 original size:46 final size:45
Alignment explanation
Indices: 72143637--72143803 Score: 155
Period size: 46 Copynumber: 3.6 Consensus size: 45
72143627 TGCTGAATAC
* *
72143637 CATGTCCCAGAAATGGTCTTACACTGAC--ACATCTCGTAGCTGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTAC-TCTCG-AGCTGATG
* *
72143682 CATGTCCCAGATAT-GTCTTACACTGGCTTACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTAC-TCTCGA-GCTGATG
* *
72143728 CATGTCCTAGACAT-GTCTTACACTAGCGCTTA-TCTCAATGCTGATG
1 CATGTCCCAGACATGGTCTTACACT-G-GCTTACTCTCGA-GCTGATG
* *
72143774 CCATGTCCTAGACATGGCCTTACACTGGCT
1 -CATGTCCCAGACATGGTCTTACACTGGCT
72143804 CTCATAATAT
Statistics
Matches: 105, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
44 12 0.11
45 14 0.13
46 49 0.47
47 16 0.15
48 14 0.13
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (45 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTACTCTCGAGCTGATG
Found at i:72143826 original size:47 final size:46
Alignment explanation
Indices: 72143675--72143844 Score: 125
Period size: 46 Copynumber: 3.7 Consensus size: 46
72143665 ACATCTCGTA
* * * ** *
72143675 GCTGATGCATGTCCCAGATATGTCTTACACT-G-GCTTACGTCTCGAG
1 GCTGATGCATGTCCTAGACATGCCTTACACTAGCGCTTA--TCTAAAT
* * *
72143721 GCCGATGCATGTCCTAGACATGTCTTACACTAGCGCTTATCTCAAT
1 GCTGATGCATGTCCTAGACATGCCTTACACTAGCGCTTATCTAAAT
*
72143767 GCTGATGCCATGTCCTAGACATGGCCTTACACT-G-GC-TCTCATAATAT
1 GCTGATG-CATGTCCTAGACAT-GCCTTACACTAGCGCTTATC-TAA-AT
* **
72143814 GGCTGATGCATGTCCCAGACATTTCTTACAC
1 -GCTGATGCATGTCCTAGACATGCCTTACAC
72143845 CAGCTAACAC
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
45 3 0.03
46 50 0.48
47 31 0.30
48 21 0.20
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (46 bp):
GCTGATGCATGTCCTAGACATGCCTTACACTAGCGCTTATCTAAAT
Found at i:72150691 original size:42 final size:42
Alignment explanation
Indices: 72150579--72150733 Score: 161
Period size: 42 Copynumber: 3.7 Consensus size: 42
72150569 TACCGTACCA
* * * * *
72150579 ATGCCATATCCTAGATATAGTTTTACATGTAA-TCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCATATCG
* *
72150621 ATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
* * *
72150664 ATGTCATATCCTAGATATGGTCTTACACGTAGTCTCATAGT-G
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATA-TCG
* *
72150706 ATGCCACAACCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
72150734 ATAGTCTTGT
Statistics
Matches: 94, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
42 62 0.66
43 32 0.34
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:72156518 original size:110 final size:110
Alignment explanation
Indices: 72156320--72156776 Score: 596
Period size: 110 Copynumber: 4.2 Consensus size: 110
72156310 CATAATTTTG
* * *
72156320 TGTATCGTGATCTGCCATTTTGATCCATACACTATCGAAGACTACACCATGAATATGAAA-ATAG
1 TGTATCATGATCTGCCATTTCGATTCATACACTATCGAAGACTACACCATGAATAT-AAATATAG
* * *
72156384 ACATATTATGCCATGGGTCTTAACCACATGGTTTTACACACATTCT
65 ACATATCATGCCATGGGTCTTAACCACATGGTCTTACACACATTCA
* * * *
72156430 TGTATCATGATATACCATTTTGATTCATACACTATCGAAGGCTACACCATGAATATAAATATAGA
1 TGTATCATGATCTGCCATTTCGATTCATACACTATCGAAGACTACACCATGAATATAAATATAGA
72156495 CATATCATGCCATGGGT-TATAACCACATGGTCTTACACACATTCA
66 CATATCATGCCATGGGTCT-TAACCACATGGTCTTACACACATTCA
* * * * * *
72156540 TGTACCCTAATCTGCCATTTCAATTCGTACACTATCGAAGACTACACCATGAATATTAATATAGA
1 TGTATCATGATCTGCCATTTCGATTCATACACTATCGAAGACTACACCATGAATATAAATATAGA
* * *
72156605 CATATCATGCCATGAGTCTTAACCACATGAG-GTTACAAACATTCA
66 CATATCATGCCATGGGTCTTAACCACATG-GTCTTACACACATTCA
* * * * * * *
72156650 TGTATCCTGATTTTCCATTTCGATTCATACACTATCAAAGGCTACACCATGAATATAAATACAAA
1 TGTATCATGATCTGCCATTTCGATTCATACACTATCGAAGACTACACCATGAATATAAATATAGA
* *
72156715 CATATCACGCCATGGGTCCTAACCACATGGTCTTACACACATTCA
66 CATATCATGCCATGGGTCTTAACCACATGGTCTTACACACATTCA
* *
72156760 TATATCATAATCTGCCA
1 TGTATCATGATCTGCCA
72156777 ATCTGGTTAG
Statistics
Matches: 300, Mismatches: 42, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
109 5 0.02
110 293 0.98
111 2 0.01
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.30
Consensus pattern (110 bp):
TGTATCATGATCTGCCATTTCGATTCATACACTATCGAAGACTACACCATGAATATAAATATAGA
CATATCATGCCATGGGTCTTAACCACATGGTCTTACACACATTCA
Found at i:72156618 original size:220 final size:220
Alignment explanation
Indices: 72156329--72156776 Score: 664
Period size: 220 Copynumber: 2.0 Consensus size: 220
72156319 GTGTATCGTG
** *
72156329 ATCTGCCATTTTGATCCATACACTATCGAAGACTACACCATGAATATGAAAATAGACATATTATG
1 ATCTGCCATTTCAATCCATACACTATCGAAGACTACACCATGAATATGAAAATAGACATATCATG
* * * * *
72156394 CCATGGGTCTTAACCACATG-GTTTTACACACATTCTTGTATCATGATATACCATTTTGATTCAT
66 CCATGAGTCTTAACCACATGAG-GTTACAAACATTCATGTATCATGATATACCATTTCGATTCAT
* * * * *
72156458 ACACTATCGAAGGCTACACCATGAATATAAATATAGACATATCATGCCATGGGTTATAACCACAT
130 ACACTATCAAAGGCTACACCATGAATATAAATACAAACATATCACGCCATGGGTCATAACCACAT
* *
72156523 GGTCTTACACACATTCATGTACCCTA
195 GGTCTTACACACATTCATATACCATA
* * * *
72156549 ATCTGCCATTTCAATTCGTACACTATCGAAGACTACACCATGAATATTAATATAGACATATCATG
1 ATCTGCCATTTCAATCCATACACTATCGAAGACTACACCATGAATATGAAAATAGACATATCATG
* * *
72156614 CCATGAGTCTTAACCACATGAGGTTACAAACATTCATGTATCCTGATTTTCCATTTCGATTCATA
66 CCATGAGTCTTAACCACATGAGGTTACAAACATTCATGTATCATGATATACCATTTCGATTCATA
*
72156679 CACTATCAAAGGCTACACCATGAATATAAATACAAACATATCACGCCATGGGTCCTAACCACATG
131 CACTATCAAAGGCTACACCATGAATATAAATACAAACATATCACGCCATGGGTCATAACCACATG
*
72156744 GTCTTACACACATTCATATATCATA
196 GTCTTACACACATTCATATACCATA
72156769 ATCTGCCA
1 ATCTGCCA
72156777 ATCTGGTTAG
Statistics
Matches: 203, Mismatches: 24, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
220 202 1.00
221 1 0.00
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.30
Consensus pattern (220 bp):
ATCTGCCATTTCAATCCATACACTATCGAAGACTACACCATGAATATGAAAATAGACATATCATG
CCATGAGTCTTAACCACATGAGGTTACAAACATTCATGTATCATGATATACCATTTCGATTCATA
CACTATCAAAGGCTACACCATGAATATAAATACAAACATATCACGCCATGGGTCATAACCACATG
GTCTTACACACATTCATATACCATA
Found at i:72158925 original size:1 final size:1
Alignment explanation
Indices: 72158921--72158954 Score: 50
Period size: 1 Copynumber: 34.0 Consensus size: 1
72158911 CAAAAACATG
* *
72158921 TTTTTTTTTCTTTTTTTCTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
72158955 GCTATGATGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.00, C:0.06, G:0.00, T:0.94
Consensus pattern (1 bp):
T
Found at i:72158944 original size:18 final size:17
Alignment explanation
Indices: 72158921--72158954 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
72158911 CAAAAACATG
72158921 TTTTTTTTTCTTTTTTTC
1 TTTTTTTTT-TTTTTTTC
72158939 TTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTT
72158955 GCTATGATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.00, C:0.06, G:0.00, T:0.94
Consensus pattern (17 bp):
TTTTTTTTTTTTTTTTC
Found at i:72159446 original size:33 final size:33
Alignment explanation
Indices: 72159409--72159473 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
72159399 ACAAGGCAAG
72159409 ATGTCCATTTTGGAGTACGAACGTGAATTCGTA
1 ATGTCCATTTTGGAGTACGAACGTGAATTCGTA
*
72159442 ATGTCCATTTTGGAGTACGAGCGTGAATTCGT
1 ATGTCCATTTTGGAGTACGAACGTGAATTCGT
72159474 CTAACTTAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (33 bp):
ATGTCCATTTTGGAGTACGAACGTGAATTCGTA
Found at i:72164641 original size:22 final size:22
Alignment explanation
Indices: 72164613--72164685 Score: 119
Period size: 22 Copynumber: 3.3 Consensus size: 22
72164603 TCACTAAATC
*
72164613 GCAACATGGTATGATTGATGTT
1 GCAACATGGTATGATCGATGTT
*
72164635 GCAACATGGTATGATCAATGTT
1 GCAACATGGTATGATCGATGTT
*
72164657 GCAACATGGTATGATCGATGTC
1 GCAACATGGTATGATCGATGTT
72164679 GCAACAT
1 GCAACAT
72164686 AAGGAGCAGA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 47 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (22 bp):
GCAACATGGTATGATCGATGTT
Found at i:72166330 original size:31 final size:31
Alignment explanation
Indices: 72166292--72166355 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
72166282 CCTTTTCATA
* *
72166292 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATGTCATAACACTAGGCCGAAGCCT
**
72166323 TTTCATATGTCATATTACTAGGCCGAAGCCT
1 TTTCATATGTCATAACACTAGGCCGAAGCCT
72166354 TT
1 TT
72166356 ACTATGAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATGTCATAACACTAGGCCGAAGCCT
Found at i:72166678 original size:25 final size:24
Alignment explanation
Indices: 72166563--72166693 Score: 201
Period size: 24 Copynumber: 5.4 Consensus size: 24
72166553 CTAGAGGCCT
72166563 AGCCTCTTTTAATAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
72166587 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
72166611 AGCCCTTTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
72166635 AGCCATTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
72166659 AGTCCTTTATCATAACTGGGGCATA
1 AGCCCTTT-TAATAACTGGGGCATA
72166684 AGCCCTTTTA
1 AGCCCTTTTA
72166694 CACTTCCTCC
Statistics
Matches: 97, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
23 18 0.19
24 57 0.59
25 22 0.23
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.31
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Done.