Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 254 of 444
Found at i:72526914 original size:42 final size:42
Alignment explanation
Indices: 72526845--72526956 Score: 181
Period size: 42 Copynumber: 2.7 Consensus size: 42
72526835 ACGGCCAAGC
* *
72526845 CACATGCCCGTGTGCCGAGCCGTGTAACACTTTAAATTGCCT
1 CACACGCCCATGTGCCGAGCCGTGTAACACTTTAAATTGCCT
72526887 CACACGCCCATGTGCCGAGCCGTGTAACACTTTAAATTGCCT
1 CACACGCCCATGTGCCGAGCCGTGTAACACTTTAAATTGCCT
*
72526929 CACACGCCCATGTG-CTAGGCCGTGTAAC
1 CACACGCCCATGTGCCGA-GCCGTGTAAC
72526957 TGCCAAACTT
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
41 2 0.03
42 64 0.97
ACGTcount: A:0.22, C:0.33, G:0.21, T:0.23
Consensus pattern (42 bp):
CACACGCCCATGTGCCGAGCCGTGTAACACTTTAAATTGCCT
Found at i:72527010 original size:13 final size:13
Alignment explanation
Indices: 72526992--72527017 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72526982 TACAGGGGAC
72526992 ACATGGCCATGTG
1 ACATGGCCATGTG
72527005 ACATGGCCATGTG
1 ACATGGCCATGTG
72527018 TCACACAAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (13 bp):
ACATGGCCATGTG
Found at i:72527180 original size:20 final size:22
Alignment explanation
Indices: 72527140--72527183 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 22
72527130 CCCTTAACCA
*
72527140 AAGCATATAAACATACTAATTC
1 AAGCATATAAACATACCAATTC
72527162 AAGCATA-AAACA-ACCAATTC
1 AAGCATATAAACATACCAATTC
72527182 AA
1 AA
72527184 TGAACTATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 9 0.43
21 5 0.24
22 7 0.33
ACGTcount: A:0.55, C:0.20, G:0.05, T:0.20
Consensus pattern (22 bp):
AAGCATATAAACATACCAATTC
Found at i:72527855 original size:13 final size:13
Alignment explanation
Indices: 72527839--72527864 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72527829 ATTTTTCTCT
72527839 TATAAGCATTTCA
1 TATAAGCATTTCA
72527852 TATAAGCATTTCA
1 TATAAGCATTTCA
72527865 CTCAAATGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (13 bp):
TATAAGCATTTCA
Found at i:72528429 original size:20 final size:20
Alignment explanation
Indices: 72528349--72528430 Score: 78
Period size: 20 Copynumber: 4.2 Consensus size: 20
72528339 ATAAATGAAT
72528349 AATAGGGGCACCGAAGTGCA
1 AATAGGGGCACCGAAGTGCA
* * *
72528369 GATAAGGGCA-CAAATGTGCA
1 AATAGGGGCACCGAA-GTGCA
* * * *
72528389 AACA-GAGCACCGTAGTTCA
1 AATAGGGGCACCGAAGTGCA
72528408 AATAGGGGCACCGAAGTGCA
1 AATAGGGGCACCGAAGTGCA
72528428 AAT
1 AAT
72528431 TCCGAACAAG
Statistics
Matches: 46, Mismatches: 13, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
19 14 0.30
20 32 0.70
ACGTcount: A:0.38, C:0.20, G:0.29, T:0.13
Consensus pattern (20 bp):
AATAGGGGCACCGAAGTGCA
Found at i:72534800 original size:42 final size:41
Alignment explanation
Indices: 72534748--72534960 Score: 266
Period size: 42 Copynumber: 5.1 Consensus size: 41
72534738 AAGAGCACAA
72534748 TCACTTAAGCTCACATAGGGAGCTTCG-TCGATACATAGCTTG
1 TCACTTAAGCTCACAT-GGGAGCTTCGCT-GATACATAGCTTG
* * * *
72534790 TCACCTAAGCTCACATGGGGAGCTTCACTGATACACAACTTG
1 TCACTTAAGCTCACAT-GGGAGCTTCGCTGATACATAGCTTG
* * *
72534832 TCACTTAAGCTCACGAGGGGAGCTTCACTGATACATAGCTTA
1 TCACTTAAGCTCAC-ATGGGAGCTTCGCTGATACATAGCTTG
* * * *
72534874 TCACTTAAGCTCACATGGAGAGCTTTGCTGATACACAACTTA
1 TCACTTAAGCTCACATGG-GAGCTTCGCTGATACATAGCTTG
72534916 TCACTTAAGCTCACATGGAGAGCTTCGCTGATACATAGCTTG
1 TCACTTAAGCTCACATGG-GAGCTTCGCTGATACATAGCTTG
72534958 TCA
1 TCA
72534961 AATCATTTCT
Statistics
Matches: 149, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
41 3 0.02
42 144 0.97
43 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (41 bp):
TCACTTAAGCTCACATGGGAGCTTCGCTGATACATAGCTTG
Found at i:72534843 original size:84 final size:83
Alignment explanation
Indices: 72534747--72534960 Score: 313
Period size: 84 Copynumber: 2.5 Consensus size: 83
72534737 GAAGAGCACA
*
72534747 ATCACTTAAGCTCACATAGGGAGCTTCG-TCGATACATAGCTTGTCACCTAAGCTCACATGGGGA
1 ATCACTTAAGCTCACAT-GGGAGCTTCGCT-GATACATAGCTTGTCACCTAAGCTCACATGGAGA
72534811 GCTTCACTGATACACAACTT
64 GCTTCACTGATACACAACTT
* * * * *
72534831 GTCACTTAAGCTCACGAGGGGAGCTTCACTGATACATAGCTTATCACTTAAGCTCACATGGAGAG
1 ATCACTTAAGCTCAC-ATGGGAGCTTCGCTGATACATAGCTTGTCACCTAAGCTCACATGGAGAG
**
72534896 CTTTGCTGATACACAACTT
65 CTTCACTGATACACAACTT
72534915 ATCACTTAAGCTCACATGGAGAGCTTCGCTGATACATAGCTTGTCA
1 ATCACTTAAGCTCACATGG-GAGCTTCGCTGATACATAGCTTGTCA
72534961 AATCATTTCT
Statistics
Matches: 115, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
83 3 0.03
84 110 0.96
85 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (83 bp):
ATCACTTAAGCTCACATGGGAGCTTCGCTGATACATAGCTTGTCACCTAAGCTCACATGGAGAGC
TTCACTGATACACAACTT
Found at i:72539353 original size:30 final size:31
Alignment explanation
Indices: 72539317--72539374 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
72539307 TTCCCGAGCC
*
72539317 TAGGGGCAAAAGTGTAATTATG-CAAAAGTT
1 TAGGGGCAAAACTGTAATTATGCCAAAAGTT
*
72539347 TAGGGGCAAAACTGTAATTTTGCCAAAA
1 TAGGGGCAAAACTGTAATTATGCCAAAA
72539375 TATGATTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.40, C:0.10, G:0.24, T:0.26
Consensus pattern (31 bp):
TAGGGGCAAAACTGTAATTATGCCAAAAGTT
Found at i:72546801 original size:40 final size:39
Alignment explanation
Indices: 72546756--72546885 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
72546746 CGGAATATAA
72546756 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
72546796 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
72546836 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
72546876 CCGGATATAA
1 CCGGATATAA
72546886 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:72546900 original size:40 final size:40
Alignment explanation
Indices: 72546772--72546923 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
72546762 ATAACCATGT
* * *
72546772 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
72546812 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
72546852 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
72546892 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
72546924 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:72546906 original size:80 final size:80
Alignment explanation
Indices: 72546772--72546921 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
72546762 ATAACCATGT
*
72546772 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
72546836 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
72546852 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
72546915 CCCGGAT
64 CCCGGAT
72546922 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:72554526 original size:29 final size:29
Alignment explanation
Indices: 72554494--72554571 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
72554484 ATACCCTCCG
** *
72554494 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
72554523 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
72554552 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
72554572 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:72554607 original size:17 final size:17
Alignment explanation
Indices: 72554585--72554622 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
72554575 TCGTCACCGT
72554585 ACACACGTGTTGCCCGC
1 ACACACGTGTTGCCCGC
72554602 ACACACGTGTTGCCCGC
1 ACACACGTGTTGCCCGC
72554619 ACAC
1 ACAC
72554623 TTAGTGCCGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.21, C:0.42, G:0.21, T:0.16
Consensus pattern (17 bp):
ACACACGTGTTGCCCGC
Found at i:72557906 original size:40 final size:39
Alignment explanation
Indices: 72557861--72557990 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
72557851 CGGAATATAA
72557861 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
72557901 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
72557941 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
72557981 CCGGATATAA
1 CCGGATATAA
72557991 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:72558005 original size:40 final size:40
Alignment explanation
Indices: 72557877--72558028 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
72557867 ATAACCATGT
* * *
72557877 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
72557917 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
72557957 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
72557997 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
72558029 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:72558011 original size:80 final size:80
Alignment explanation
Indices: 72557877--72558026 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
72557867 ATAACCATGT
*
72557877 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
72557941 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
72557957 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
72558020 CCCGGAT
64 CCCGGAT
72558027 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:72575044 original size:28 final size:28
Alignment explanation
Indices: 72574998--72575065 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
72574988 TTTAAAACCC
*
72574998 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
72575025 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
72575053 TA-GGGTAATTTCG
1 TAGGGGTAATTTCG
72575066 TGATCTACGC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 18 0.46
28 21 0.54
ACGTcount: A:0.19, C:0.10, G:0.26, T:0.44
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:72576698 original size:20 final size:20
Alignment explanation
Indices: 72576675--72576712 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
72576665 CACATCCAAA
*
72576675 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
72576695 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
72576713 GAATAAACCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:72583553 original size:40 final size:40
Alignment explanation
Indices: 72583425--72583576 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
72583415 ATCACGATTT
* * * **
72583425 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* *
72583465 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * * *
72583505 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* *
72583545 GCATAATTGTCTTCAGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTC-GGGTCTTAGCCCGGATAT
72583577 CATTCAATTT
Statistics
Matches: 95, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 2 0.02
40 88 0.93
41 5 0.05
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
Found at i:72587609 original size:28 final size:28
Alignment explanation
Indices: 72587563--72587631 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
72587553 TTTAAAACCC
*
72587563 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
72587590 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
72587618 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
72587632 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:72589741 original size:11 final size:11
Alignment explanation
Indices: 72589725--72589761 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
72589715 AAGCCCATTG
72589725 GGCCCAGTTTT
1 GGCCCAGTTTT
*
72589736 GGCCCA--TTG
1 GGCCCAGTTTT
72589745 GGCCCAGTTTT
1 GGCCCAGTTTT
72589756 GGCCCA
1 GGCCCA
72589762 TCGAGGCCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 8 0.36
11 14 0.64
ACGTcount: A:0.11, C:0.32, G:0.30, T:0.27
Consensus pattern (11 bp):
GGCCCAGTTTT
Found at i:72589742 original size:20 final size:20
Alignment explanation
Indices: 72589717--72589762 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
72589707 TGGGCCGTAA
72589717 GCCCATTGGGCCCAGTTTTG
1 GCCCATTGGGCCCAGTTTTG
72589737 GCCCATTGGGCCCAGTTTTG
1 GCCCATTGGGCCCAGTTTTG
72589757 GCCCAT
1 GCCCAT
72589763 CGAGGCCCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.11, C:0.33, G:0.28, T:0.28
Consensus pattern (20 bp):
GCCCATTGGGCCCAGTTTTG
Found at i:72591640 original size:75 final size:75
Alignment explanation
Indices: 72591551--72591700 Score: 255
Period size: 75 Copynumber: 2.0 Consensus size: 75
72591541 GTAAAATTAG
** * *
72591551 TGAATTTTGGAAAATCCTTAGTTGGGGGAAGCTAAGGTAGTGGAGTAGGCAATTGGGACTGAGCC
1 TGAATTTTGGAAAATCCTTAGTTGGGCAAAGCTAAGGCAGTAGAGTAGGCAATTGGGACTGAGCC
72591616 AATCTAAATT
66 AATCTAAATT
72591626 TGAATTTTGGAAAATCCTTAGTTGGGCAAAGCTAAGGCAGTAGAGTAGGCAATTGGGACTGAGCC
1 TGAATTTTGGAAAATCCTTAGTTGGGCAAAGCTAAGGCAGTAGAGTAGGCAATTGGGACTGAGCC
*
72591691 ACTCTAAATT
66 AATCTAAATT
72591701 CTTGTGTTCT
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 70 1.00
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.27
Consensus pattern (75 bp):
TGAATTTTGGAAAATCCTTAGTTGGGCAAAGCTAAGGCAGTAGAGTAGGCAATTGGGACTGAGCC
AATCTAAATT
Found at i:72597887 original size:136 final size:138
Alignment explanation
Indices: 72597636--72597898 Score: 386
Period size: 136 Copynumber: 1.9 Consensus size: 138
72597626 AGGGAACATA
* * * *
72597636 AATAAAATTAATATATGAATTCCTTTCATACAAAATATTATTTGTATATATTTTACCAGATTTAT
1 AATAAAATTAATATATGAATTCCATTAATACAAAATATTATATGTATATATTTTACCAAATTTAT
* * * * *
72597701 TAATATTAATAGTTATATTAATTAATGTCGGTAAAAATATAAATGACATGGAAATTAATATTCTT
66 TAATATAAACAATTATATTAATTAATGTCGGTAAAAATATAAAAGACATGGAAAATAATATTCTT
72597766 TTGTAAAG
131 TTGTAAAG
* **
72597774 AATATAATTAATATATGAATTTGATTAATACAAAATATTA-AT-TATATATTTTACCAAATTTAT
1 AATAAAATTAATATATGAATTCCATTAATACAAAATATTATATGTATATATTTTACCAAATTTAT
* *
72597837 TAATATAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAAATAATATT
66 TAATATAAACAATTATATTAATTAATGTCGGTAAAAATATAAAAGACATGGAAAATAATATT
72597899 AATTTTATAT
Statistics
Matches: 111, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
136 75 0.68
137 1 0.01
138 35 0.32
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.41
Consensus pattern (138 bp):
AATAAAATTAATATATGAATTCCATTAATACAAAATATTATATGTATATATTTTACCAAATTTAT
TAATATAAACAATTATATTAATTAATGTCGGTAAAAATATAAAAGACATGGAAAATAATATTCTT
TTGTAAAG
Found at i:72597922 original size:88 final size:86
Alignment explanation
Indices: 72597807--72597986 Score: 261
Period size: 88 Copynumber: 2.1 Consensus size: 86
72597797 ATTAATACAA
*
72597807 AATATTAATTATATATTTTACCAAATTTATTAATATAAACAATTATATTAATTAATTTCGGTCAA
1 AATATTAATTATATATTTTACCAAATTTATTAATATAAACAATTATATTAATTAATTTCAGTCAA
*
72597872 AATATAAAAGACATGGAAAAT
66 AATATAAAAGACATAGAAAAT
* * * * *
72597893 AATATTAATTTTATATATTTTATCGAATTTATTAATATAAACAGTTATATTAATTAGTTTTAGTC
1 AATATTAA--TTATATATTTTACCAAATTTATTAATATAAACAATTATATTAATTAATTTCAGTC
* *
72597958 AAAATATACAAGACATAGAAATT
64 AAAATATAAAAGACATAGAAAAT
72597981 AATATT
1 AATATT
72597987 CTTTTGGAAA
Statistics
Matches: 83, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
86 8 0.10
88 75 0.90
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (86 bp):
AATATTAATTATATATTTTACCAAATTTATTAATATAAACAATTATATTAATTAATTTCAGTCAA
AATATAAAAGACATAGAAAAT
Found at i:72598059 original size:71 final size:73
Alignment explanation
Indices: 72597982--72598123 Score: 202
Period size: 73 Copynumber: 2.0 Consensus size: 73
72597972 ATAGAAATTA
* * * *
72597982 ATATTCTTTTGGAAAGAATATAATT-C-ATTT-T-TCTTTCCATTTGTCTTCTCTATTAATATGG
1 ATATTCTTTTGGAAAG--TATAATTCCTATTTCTAACTTTCCATTTGCCTGCTCTATTAATAAGG
72598043 GAATAATCCT
64 GAATAATCCT
72598053 ATATTCTTTTGGAAAGTATAATTCCTATTTCTAACTTTCCATTTGCCTGCTCTATTAATAAGGGA
1 ATATTCTTTTGGAAAGTATAATTCCTATTTCTAACTTTCCATTTGCCTGCTCTATTAATAAGGGA
72598118 ATAATC
66 ATAATC
72598124 TTGGTTTTCC
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
69 7 0.11
70 1 0.02
71 20 0.32
72 1 0.02
73 34 0.54
ACGTcount: A:0.29, C:0.15, G:0.11, T:0.45
Consensus pattern (73 bp):
ATATTCTTTTGGAAAGTATAATTCCTATTTCTAACTTTCCATTTGCCTGCTCTATTAATAAGGGA
ATAATCCT
Found at i:72601369 original size:39 final size:39
Alignment explanation
Indices: 72601333--72601579 Score: 228
Period size: 39 Copynumber: 6.3 Consensus size: 39
72601323 TTATCAGGAT
* **
72601333 TACCAAAGTACAATAACGGCATGTAAGTGTGTTCAGGGG
1 TACCAAAGTACAATAACGGCACGTAAGTGCATTCAGGGG
* * ** *
72601372 TACCGAAGTACAACAGGGGCACATAAGTGCATTCAGGGG
1 TACCAAAGTACAATAACGGCACGTAAGTGCATTCAGGGG
* **
72601411 TACCGAAGTACAATAGGGGCACGTAAGTGCATTCAGGGG
1 TACCAAAGTACAATAACGGCACGTAAGTGCATTCAGGGG
* *
72601450 TACCAAAGTACAA-CACGGGCATGTAAGTGCATTCAGGGG
1 TACCAAAGTACAATAAC-GGCACGTAAGTGCATTCAGGGG
* * ** **
72601489 TACCGAAGCACAACT-GGGGCACGTAAGTTTATTCAGGGG
1 TACCAAAGTACAA-TAACGGCACGTAAGTGCATTCAGGGG
* * * * *
72601528 TATCGAAGTATAATAAGGGCACGTATGTGCATTCAGGGG
1 TACCAAAGTACAATAACGGCACGTAAGTGCATTCAGGGG
* *
72601567 TATCGAAGTACAA
1 TACCAAAGTACAA
72601580 CAGGTTTCTA
Statistics
Matches: 174, Mismatches: 30, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
38 1 0.01
39 173 0.99
ACGTcount: A:0.32, C:0.18, G:0.30, T:0.20
Consensus pattern (39 bp):
TACCAAAGTACAATAACGGCACGTAAGTGCATTCAGGGG
Found at i:72601390 original size:19 final size:19
Alignment explanation
Indices: 72601366--72601464 Score: 74
Period size: 19 Copynumber: 5.1 Consensus size: 19
72601356 TAAGTGTGTT
72601366 CAGGGGTACCGAAGTACAA
1 CAGGGGTACCGAAGTACAA
* ** * *
72601385 CAGGGGCACATAAGTGCATT
1 CAGGGGTACCGAAGTACA-A
72601405 CAGGGGTACCGAAGTACAA
1 CAGGGGTACCGAAGTACAA
* * * *
72601424 TAGGGGCA-CGTAAGTGCATT
1 CAGGGGTACCG-AAGTACA-A
*
72601444 CAGGGGTACCAAAGTACAA
1 CAGGGGTACCGAAGTACAA
72601463 CA
1 CA
72601465 CGGGCATGTA
Statistics
Matches: 57, Mismatches: 19, Indels: 8
0.68 0.23 0.10
Matches are distributed among these distances:
18 2 0.04
19 28 0.49
20 26 0.46
21 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.30, T:0.15
Consensus pattern (19 bp):
CAGGGGTACCGAAGTACAA
Found at i:72601410 original size:20 final size:20
Alignment explanation
Indices: 72601385--72601488 Score: 70
Period size: 20 Copynumber: 5.3 Consensus size: 20
72601375 CGAAGTACAA
72601385 CAGGGGCACATAAGTGCATT
1 CAGGGGCACATAAGTGCATT
* ** * *
72601405 CAGGGGTACCGAAGTACAAT
1 CAGGGGCACATAAGTGCATT
*
72601425 -AGGGGCACGTAAGTGCATT
1 CAGGGGCACATAAGTGCATT
* * *
72601444 CAGGGGTACCA-AAGTACA-A
1 CAGGGGCA-CATAAGTGCATT
* **
72601463 CACGGGCATGTAAGTGCATT
1 CAGGGGCACATAAGTGCATT
72601483 CAGGGG
1 CAGGGG
72601489 TACCGAAGCA
Statistics
Matches: 59, Mismatches: 21, Indels: 8
0.67 0.24 0.09
Matches are distributed among these distances:
19 26 0.44
20 32 0.54
21 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.33, T:0.17
Consensus pattern (20 bp):
CAGGGGCACATAAGTGCATT
Found at i:72601459 original size:78 final size:78
Alignment explanation
Indices: 72601333--72601579 Score: 316
Period size: 78 Copynumber: 3.2 Consensus size: 78
72601323 TTATCAGGAT
* ** * * * *
72601333 TACCAAAGTACAATAACGGCATGTAAGTGTGTTCAGGGGTACCGAAGTACAACAGGGGCACATAA
1 TACCGAAGTACAATAGGGGCACGTAAGTGTATTCAGGGGTACCGAAGTACAACAAGGGCACGTAA
72601398 GTGCATTCAGGGG
66 GTGCATTCAGGGG
* * * *
72601411 TACCGAAGTACAATAGGGGCACGTAAGTGCATTCAGGGGTACCAAAGTACAACACGGGCATGTAA
1 TACCGAAGTACAATAGGGGCACGTAAGTGTATTCAGGGGTACCGAAGTACAACAAGGGCACGTAA
72601476 GTGCATTCAGGGG
66 GTGCATTCAGGGG
* * * * *
72601489 TACCGAAGCACAACT-GGGGCACGTAAGTTTATTCAGGGGTATCGAAGTATAATAAGGGCACGTA
1 TACCGAAGTACAA-TAGGGGCACGTAAGTGTATTCAGGGGTACCGAAGTACAACAAGGGCACGTA
*
72601553 TGTGCATTCAGGGG
65 AGTGCATTCAGGGG
*
72601567 TATCGAAGTACAA
1 TACCGAAGTACAA
72601580 CAGGTTTCTA
Statistics
Matches: 146, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
78 145 0.99
79 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.30, T:0.20
Consensus pattern (78 bp):
TACCGAAGTACAATAGGGGCACGTAAGTGTATTCAGGGGTACCGAAGTACAACAAGGGCACGTAA
GTGCATTCAGGGG
Found at i:72601535 original size:117 final size:116
Alignment explanation
Indices: 72601333--72601581 Score: 354
Period size: 117 Copynumber: 2.1 Consensus size: 116
72601323 TTATCAGGAT
* ** *
72601333 TACCAAAGTACAATAACGGCATGTAAGTGTGTTCAGGGGTACCGAAGTACAACAGGGGCACATAA
1 TACCAAAGTACAA-CACGGCATGTAAGTGCATTCAGGGGTACCGAAGCACAACAGGGGCACATAA
*
72601398 GTGCATTCAGGGGTACCGAAGTACAATAGGGGCACGTAAGTGCATTCAGGGG
65 GTGCATTCAGGGGTACCGAAGTACAATAAGGGCACGTAAGTGCATTCAGGGG
* *
72601450 TACCAAAGTACAACACGGGCATGTAAGTGCATTCAGGGGTACCGAAGCACAACTGGGGCACGTAA
1 TACCAAAGTACAACAC-GGCATGTAAGTGCATTCAGGGGTACCGAAGCACAACAGGGGCACATAA
** * * *
72601515 GTTTATTCAGGGGTATCGAAGTATAATAAGGGCACGTATGTGCATTCAGGGG
65 GTGCATTCAGGGGTACCGAAGTACAATAAGGGCACGTAAGTGCATTCAGGGG
* *
72601567 TATCGAAGTACAACA
1 TACCAAAGTACAACA
72601582 GGTTTCTACT
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
116 2 0.02
117 115 0.98
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.20
Consensus pattern (116 bp):
TACCAAAGTACAACACGGCATGTAAGTGCATTCAGGGGTACCGAAGCACAACAGGGGCACATAAG
TGCATTCAGGGGTACCGAAGTACAATAAGGGCACGTAAGTGCATTCAGGGG
Found at i:72611401 original size:45 final size:45
Alignment explanation
Indices: 72611338--72611511 Score: 156
Period size: 48 Copynumber: 3.8 Consensus size: 45
72611328 CAATGTTTAG
72611338 GCCATGT-CCAACATGGTCTTACACTGGCTCACAATCAACGCCGAT
1 GCCATGTCCCAACATGGTCTTACACTGGCTCACAATCAA-GCCGAT
* * * *
72611383 GCCACGT-CCAATATGGTCTTACACTGGCTCTCATAACATAGCCGAT
1 GCCATGTCCCAACATGGTCTTACACTGGCTCACA-ATCA-AGCCGAT
* * * **
72611429 GCCATGTTGCAAACATGGTCTTACACTGG-TATACGAAATGTAGCCGAT
1 GCCATG-TCCCAACATGGTCTTACACTGGCT-CAC--AATCAAGCCGAT
* *
72611477 GCCATGTCCCAAATATGGTCTTACACTAGCTCACA
1 GCCATGTCCC-AACATGGTCTTACACTGGCTCACA
72611512 TGTCACCCCA
Statistics
Matches: 103, Mismatches: 17, Indels: 17
0.75 0.12 0.12
Matches are distributed among these distances:
45 30 0.29
46 15 0.15
47 5 0.05
48 50 0.49
49 2 0.02
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (45 bp):
GCCATGTCCCAACATGGTCTTACACTGGCTCACAATCAAGCCGAT
Found at i:72616488 original size:30 final size:29
Alignment explanation
Indices: 72616445--72616508 Score: 110
Period size: 30 Copynumber: 2.2 Consensus size: 29
72616435 CAAGTAGCCG
*
72616445 AAGCTAGTTAAATCGCACACTTAGTGCTA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
72616474 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
72616504 AAGCT
1 AAGCT
72616509 TCCGATTCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.21
30 26 0.79
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:72622647 original size:20 final size:20
Alignment explanation
Indices: 72622611--72622650 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
72622601 AAACTGAACC
*
72622611 TAACCAAAATTTTCAAAACT
1 TAACCAAAATTTCCAAAACT
72622631 TAACC-AAATCTTCCAAAACT
1 TAACCAAAAT-TTCCAAAACT
72622651 GTTAAAGTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.47, C:0.25, G:0.00, T:0.28
Consensus pattern (20 bp):
TAACCAAAATTTCCAAAACT
Found at i:72631407 original size:52 final size:47
Alignment explanation
Indices: 72631315--72631583 Score: 222
Period size: 48 Copynumber: 5.6 Consensus size: 47
72631305 TCCACATGTG
* * * * *
72631315 GATGCCATATCCCAGATATGGTCTTATAC-GAAGCCTCATATCATTGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGCA--CACATATCATTGCT
* *
72631363 GATGCCAGACATGTCCCAAACATGGTCTTACACTAGCACACATATCATTGTT
1 GATG-C---CATGTCCCAGACATGGTCTTACACT-GCACACATATCATTGCT
* * * ** *
72631415 AATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATTAAAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-GCACACATATCATTGCT
* *** *
72631463 GATGCCATGTCCCAGACATGGTCTTACACTGACACATATATCAACACC
1 GATGCCATGTCCCAGACATGGTCTTACACTG-CACACATATCATTGCT
* * * *
72631511 GATGCCATGTCCTAGACATGGTCTTACACTGC-CTC-TCATC-TCGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGCACACAT-ATCATTGCT
72631556 GATGCCATGTCCCAGACATGGTCTTACA
1 GATGCCATGTCCCAGACATGGTCTTACA
72631584 TGGGATCTTA
Statistics
Matches: 185, Mismatches: 28, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
45 31 0.17
46 4 0.02
47 2 0.01
48 109 0.59
49 1 0.01
51 1 0.01
52 35 0.19
54 2 0.01
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGCACACATATCATTGCT
Found at i:72631443 original size:48 final size:47
Alignment explanation
Indices: 72631372--72631583 Score: 234
Period size: 48 Copynumber: 4.5 Consensus size: 47
72631362 TGATGCCAGA
* ** ***
72631372 CATGTCCCAAACATGGTCTTACACTAGCACACATATCATTGTTAATGC
1 CATGTCCCAGACATGGTCTTACACT-GCACACATATCAAAGCCGATGC
* *
72631420 CATGTCCTAGACATGGTCTTACACTGGCACACATATTAAAGCCGATGC
1 CATGTCCCAGACATGGTCTTACACT-GCACACATATCAAAGCCGATGC
*
72631468 CATGTCCCAGACATGGTCTTACACTGACACATATATCAACA-CCGATGC
1 CATGTCCCAGACATGGTCTTACACTG-CACACATATCAA-AGCCGATGC
* * **
72631516 CATGTCCTAGACATGGTCTTACACTGC-CTC-TCATC-TCGCCGATGC
1 CATGTCCCAGACATGGTCTTACACTGCACACAT-ATCAAAGCCGATGC
72631561 CATGTCCCAGACATGGTCTTACA
1 CATGTCCCAGACATGGTCTTACA
72631584 TGGGATCTTA
Statistics
Matches: 142, Mismatches: 18, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
45 30 0.21
46 4 0.03
47 2 0.01
48 105 0.74
49 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.26
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGCACACATATCAAAGCCGATGC
Found at i:72631504 original size:96 final size:93
Alignment explanation
Indices: 72631372--72631583 Score: 264
Period size: 96 Copynumber: 2.2 Consensus size: 93
72631362 TGATGCCAGA
* *****
72631372 CATGTCCCAAACATGGTCTTACACTAGCACACATATCATTGTTAATGCCATGTCCTAGACATGGT
1 CATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCAATGCCATGTCCTAGACATGGT
* *
72631437 CTTACACTGGCACACATATTAAAGCCGATGC
66 CTTACACTGCCACACAT-CT--AGCCGATGC
* *
72631468 CATGTCCCAGACATGGTCTTACACT-GACACATATATCAACACCGATGCCATGTCCTAGACATGG
1 CATGTCCCAGACATGGTCTTACACTAG-CACACATATCAACACCAATGCCATGTCCTAGACATGG
* * *
72631532 TCTTACACTGCCTCTCATCTCGCCGATGC
65 TCTTACACTGCCACACATCTAGCCGATGC
72631561 CATGTCCCAGACATGGTCTTACA
1 CATGTCCCAGACATGGTCTTACA
72631584 TGGGATCTTA
Statistics
Matches: 102, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
93 31 0.30
95 2 0.02
96 69 0.68
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.26
Consensus pattern (93 bp):
CATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCAATGCCATGTCCTAGACATGGT
CTTACACTGCCACACATCTAGCCGATGC
Found at i:72636170 original size:73 final size:73
Alignment explanation
Indices: 72636079--72636227 Score: 298
Period size: 73 Copynumber: 2.0 Consensus size: 73
72636069 TTAGGGACTA
72636079 AATTGTAAATATATGAATGTATAAGGGTAAAATAGTAATTTTACCCAAGTATGAATTTTTGGTCA
1 AATTGTAAATATATGAATGTATAAGGGTAAAATAGTAATTTTACCCAAGTATGAATTTTTGGTCA
72636144 TTTTGAGT
66 TTTTGAGT
72636152 AATTGTAAATATATGAATGTATAAGGGTAAAATAGTAATTTTACCCAAGTATGAATTTTTGGTCA
1 AATTGTAAATATATGAATGTATAAGGGTAAAATAGTAATTTTACCCAAGTATGAATTTTTGGTCA
72636217 TTTTGAGT
66 TTTTGAGT
72636225 AAT
1 AAT
72636228 GTATGTATTA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 76 1.00
ACGTcount: A:0.38, C:0.05, G:0.17, T:0.40
Consensus pattern (73 bp):
AATTGTAAATATATGAATGTATAAGGGTAAAATAGTAATTTTACCCAAGTATGAATTTTTGGTCA
TTTTGAGT
Found at i:72640149 original size:48 final size:48
Alignment explanation
Indices: 72640112--72640257 Score: 220
Period size: 48 Copynumber: 3.0 Consensus size: 48
72640102 TTACACGATG
* * * * *
72640112 TCTCATATCGATGCAAATGCCATATCCCAAATATGGTCTTACATGGGA
1 TCTCATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGA
* *
72640160 TCACATGTCGATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGA
1 TCTCATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGA
*
72640208 TCTCATAACGATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGA
1 TCTCATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGA
72640256 TC
1 TC
72640258 ACACATAACC
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 88 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (48 bp):
TCTCATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGA
Found at i:72643089 original size:40 final size:40
Alignment explanation
Indices: 72643012--72643189 Score: 263
Period size: 40 Copynumber: 4.5 Consensus size: 40
72643002 AAACCAAGTA
* *
72643012 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
72643051 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72643091 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
72643131 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
72643171 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
72643190 TTATCATCCG
Statistics
Matches: 128, Mismatches: 8, Indels: 5
0.91 0.06 0.04
Matches are distributed among these distances:
39 15 0.12
40 113 0.88
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72651344 original size:40 final size:40
Alignment explanation
Indices: 72651267--72651482 Score: 341
Period size: 40 Copynumber: 5.5 Consensus size: 40
72651257 AAACCAAGTA
* *
72651267 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
72651306 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72651346 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72651386 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
72651426 CCTTCGGG-CTTAGCCCGAAT-TAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72651464 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
72651483 TTATCATCCG
Statistics
Matches: 166, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
38 24 0.14
39 34 0.20
40 108 0.65
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72653366 original size:43 final size:41
Alignment explanation
Indices: 72653318--72653482 Score: 152
Period size: 43 Copynumber: 3.9 Consensus size: 41
72653308 TTCCAATATG
*
72653318 TGATTTCGTGTAAGACCACATCTGGGACATTGGCATCGATT
1 TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGATT
* * * * *
72653359 TGAGATTTACGTGTAAGGCTATGTCTGGTACATCGGCATCGCATT
1 T--GATTT-CGTGTAAGACCACGTCTGGGACATTGGCATCG-ATT
* *
72653404 TGATTTCGTGTGAGACC-CTGTCTGGGACAGTGGCATCGATATT
1 TGATTTCGTGTAAGACCAC-GTCTGGGACATTGGCATCG--ATT
* * **
72653447 TGATTACATGTAAGACCACGTCTGGGATGTTGGCAT
1 TGATTTCGTGTAAGACCACGTCTGGGACATTGGCAT
72653483 TAGATAAGCT
Statistics
Matches: 97, Mismatches: 20, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
41 1 0.01
42 24 0.25
43 41 0.42
44 27 0.28
45 4 0.04
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.32
Consensus pattern (41 bp):
TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGATT
Found at i:72654205 original size:23 final size:22
Alignment explanation
Indices: 72654179--72654224 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 22
72654169 TTATGAATCA
*
72654179 TATGTTTTGGTATGATTTTGGTT
1 TATGATTTGGTATG-TTTTGGTT
72654202 TATGATTTGGTATGTTTTGGTT
1 TATGATTTGGTATGTTTTGGTT
72654224 T
1 T
72654225 GAATATAAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 9 0.41
23 13 0.59
ACGTcount: A:0.13, C:0.00, G:0.26, T:0.61
Consensus pattern (22 bp):
TATGATTTGGTATGTTTTGGTT
Found at i:72654220 original size:10 final size:10
Alignment explanation
Indices: 72654179--72654222 Score: 52
Period size: 10 Copynumber: 4.1 Consensus size: 10
72654169 TTATGAATCA
72654179 TATGTTTTGG
1 TATGTTTTGG
72654189 TATGATTTTGG
1 TATG-TTTTGG
*
72654200 TTTATGATTTGG
1 --TATGTTTTGG
72654212 TATGTTTTGG
1 TATGTTTTGG
72654222 T
1 T
72654223 TTGAATATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
10 14 0.48
11 6 0.21
12 5 0.17
13 4 0.14
ACGTcount: A:0.14, C:0.00, G:0.27, T:0.59
Consensus pattern (10 bp):
TATGTTTTGG
Found at i:72654837 original size:27 final size:27
Alignment explanation
Indices: 72654807--72654860 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
72654797 GTTTAGTCTC
72654807 GACCTCTTTCTAAAGCACA-TTTAAGGT
1 GACCTCTTTCTAAAGCA-AGTTTAAGGT
72654834 GACCTCTTTCTAAAGCAAGTTTAAGGT
1 GACCTCTTTCTAAAGCAAGTTTAAGGT
72654861 CTTGTTAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (27 bp):
GACCTCTTTCTAAAGCAAGTTTAAGGT
Found at i:72656887 original size:11 final size:11
Alignment explanation
Indices: 72656871--72656897 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
72656861 GACCATTGAA
72656871 TATATGTTTAT
1 TATATGTTTAT
72656882 TATATGTTTAT
1 TATATGTTTAT
72656893 TATAT
1 TATAT
72656898 ATTTTAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (11 bp):
TATATGTTTAT
Found at i:72661102 original size:27 final size:26
Alignment explanation
Indices: 72661048--72661121 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 26
72661038 CCCTTTCATA
*
72661048 ATTTGCCACGAAAGC-T-ATTTTATG
1 ATTTGCCACAAAAGCTTCATTTTATG
72661072 ATTTGCCACAAAAGCTTTCATTTTATG
1 ATTTGCCACAAAAGC-TTCATTTTATG
* *
72661099 ATTTTCCACAAAGGCTCTCATTT
1 ATTTGCCACAAAAGCT-TCATTT
72661122 CCTTTCCTGA
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
24 14 0.33
26 2 0.05
27 27 0.63
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.39
Consensus pattern (26 bp):
ATTTGCCACAAAAGCTTCATTTTATG
Found at i:72666777 original size:47 final size:46
Alignment explanation
Indices: 72666726--72666902 Score: 211
Period size: 47 Copynumber: 3.8 Consensus size: 46
72666716 TGGTTGAGCA
72666726 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-GAATG
* *
72666773 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G
* *
72666818 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
*
72666866 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72666903 GCGGGTTACA
Statistics
Matches: 113, Mismatches: 7, Indels: 21
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 5 0.04
46 33 0.29
47 58 0.51
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:72675989 original size:44 final size:42
Alignment explanation
Indices: 72675924--72676021 Score: 126
Period size: 44 Copynumber: 2.3 Consensus size: 42
72675914 ATATGTGGTC
* *
72675924 TCGTGTAAGACCACATTTGGGATGTTGGCATCG-ACTTATGATT
1 TCGTGTAAGACCACATCTGGGATGTTAGCATCGTA-TT-TGATT
**
72675967 TACGTGTAAGACCATGTCTGGGATGTTAGCATCGTATTTGATT
1 T-CGTGTAAGACCACATCTGGGATGTTAGCATCGTATTTGATT
72676010 TCGTGTAAGACC
1 TCGTGTAAGACC
72676022 CTACTTGGGA
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
42 11 0.22
43 7 0.14
44 30 0.61
45 1 0.02
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.35
Consensus pattern (42 bp):
TCGTGTAAGACCACATCTGGGATGTTAGCATCGTATTTGATT
Found at i:72676073 original size:43 final size:42
Alignment explanation
Indices: 72675995--72676075 Score: 99
Period size: 43 Copynumber: 1.9 Consensus size: 42
72675985 TGGGATGTTA
* * * *
72675995 GCATCGTATTTGATTTCGTGTAAGACCCTACTTGGGACAATG
1 GCATCGTATTTGATTACATGTAACACCATACTTGGGACAATG
**
72676037 GCATCGATATTTGATTACATGTAACACCATGTTTGGGAC
1 GCATCG-TATTTGATTACATGTAACACCATACTTGGGAC
72676076 GTTTGCATTA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
42 6 0.19
43 26 0.81
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (42 bp):
GCATCGTATTTGATTACATGTAACACCATACTTGGGACAATG
Found at i:72678560 original size:29 final size:29
Alignment explanation
Indices: 72678520--72678622 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
72678510 GTTGAGAGAT
*
72678520 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
72678549 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
72678578 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
72678607 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
72678623 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:72683314 original size:40 final size:39
Alignment explanation
Indices: 72683231--72683413 Score: 239
Period size: 40 Copynumber: 4.7 Consensus size: 39
72683221 TCGAATGATG
* *
72683231 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
*
72683270 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
72683309 TTCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
72683348 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
72683388 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72683414 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 8, Indels: 15
0.85 0.05 0.10
Matches are distributed among these distances:
38 24 0.19
39 48 0.38
40 56 0.44
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:72683365 original size:78 final size:79
Alignment explanation
Indices: 72683231--72683411 Score: 244
Period size: 78 Copynumber: 2.3 Consensus size: 79
72683221 TCGAATGATG
*
72683231 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAATCCGGACTAAGATCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAATCCGGACTAAGATCCGAAGGCATTTG
72683296 TGCGAGTTACTA-A
66 TGCGAGTTACTATA
* * **
72683309 TTCCGGGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACT-AATCCGGACTAAGAT-CCGAAGGCAT
72683371 TTGTGCGAGTTACTATA
63 TTGTGCGAGTTACTATA
* *
72683388 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
72683412 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 7, Indels: 8
0.86 0.07 0.08
Matches are distributed among these distances:
77 7 0.08
78 60 0.66
79 24 0.26
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTATA
Found at i:72691468 original size:39 final size:39
Alignment explanation
Indices: 72691412--72691593 Score: 230
Period size: 40 Copynumber: 4.7 Consensus size: 39
72691402 TCGAATGATG
* *
72691412 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
*
72691451 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
72691490 TTCC-GGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
72691528 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
72691568 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72691594 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 8, Indels: 17
0.83 0.05 0.11
Matches are distributed among these distances:
37 17 0.13
38 17 0.13
39 43 0.34
40 49 0.39
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:72691551 original size:77 final size:79
Alignment explanation
Indices: 72691413--72691591 Score: 233
Period size: 77 Copynumber: 2.3 Consensus size: 79
72691403 CGAATGATGT
*
72691413 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAATCCGGACTAAGATCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAATCCGGACTAAGATCCGAAGGCATTTGT
*
72691478 GCGAGTTACTA-ATT
66 GCGAGTTACTATA-A
* * **
72691492 CC-GGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACT-AATCCGGACTAAGAT-CCGAAGGCATTT
72691553 GTGCGAGTTACTATAA
64 GTGCGAGTTACTATAA
*
72691569 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
72691592 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 7, Indels: 10
0.84 0.07 0.10
Matches are distributed among these distances:
76 7 0.08
77 53 0.60
78 14 0.16
79 14 0.16
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAATCCGGACTAAGATCCGAAGGCATTTGT
GCGAGTTACTATAA
Found at i:72696240 original size:641 final size:641
Alignment explanation
Indices: 72695019--72696305 Score: 2439
Period size: 641 Copynumber: 2.0 Consensus size: 641
72695009 AAGTGTAGCA
*
72695019 AATGTGAATTCTAGTTATAAGAAGTCGGTTTTATAGGCCATATTGTGTCAGCATCAGGTATCCGA
1 AATGTGAATTCTAGTTATAAGAAGTCGGTTTTATAGGCCATATTGTGTCAGCATCAGATATCCGA
72695084 GTTGATCTGAGCAAAATTTTAGCTATTTTGGATTGGAAGCCTCTGAGAAATGTCTCCGAAGTCTG
66 GTTGATCTGAGCAAAATTTTAGCTATTTTGGATTGGAAGCCTCTGAGAAATGTCTCCGAAGTCTG
72695149 CAATTTTCTGGGACTTGCCGGTTATTATAGGAGTTTTGTAAAAGGCTTTTTGATGATCACGACTC
131 CAATTTTCTGGGACTTGCCGGTTATTATAGGAGTTTTGTAAAAGGCTTTTTGATGATCACGACTC
*
72695214 CATTGACAAAACTACTTTAGAAAGATGTGAAATTTGATTGGTTTAAAAAGTGTCAAAAAAGCTTT
196 CATTGACAAAACTACCTTAGAAAGATGTGAAATTTGATTGGTTTAAAAAGTGTCAAAAAAGCTTT
72695279 GATCAATTGAAAGCTCTATTGACTGAAGCCCCAGTGTTAGTACAACCAGAATAGGGTAAAGAATT
261 GATCAATTGAAAGCTCTATTGACTGAAGCCCCAGTGTTAGTACAACCAGAATAGGGTAAAGAATT
72695344 TCTGATCTACAGTGATGCTTCATTAAACTGTCTAGGATGTGTTTTGATGCTAGAAGACAAAGTAA
326 TCTGATCTACAGTGATGCTTCATTAAACTGTCTAGGATGTGTTTTGATGCTAGAAGACAAAGTAA
72695409 TTGCTTATGTTTTGAGACAGTTAAAGCCACATGAAAAGAACTAGCCGACGCATGACCTTGAGTTA
391 TTGCTTATGTTTTGAGACAGTTAAAGCCACATGAAAAGAACTAGCCGACGCATGACCTTGAGTTA
72695474 GCTGCGATTGTATTTGCTTTGAAGATTTGGCGCCACTATTGTTTTGGAGAGAAATGTCTCGTATA
456 GCTGCGATTGTATTTGCTTTGAAGATTTGGCGCCACTATTGTTTTGGAGAGAAATGTCTCGTATA
*
72695539 TTCTGATCATAAGAGTTTGAAATATCTGATGACTTAGAAAGATCTAAATATGTGACAAAGAAGAC
521 TTCTGATCATAAGAGTTTGAAATATCTGATGACTCAGAAAGATCTAAATATGTGACAAAGAAGAC
72695604 GACTAGAGTTACTGAAAGACTATGAGCTTGTTATTGATTATCATCCGGGAAAGGCT
586 GACTAGAGTTACTGAAAGACTATGAGCTTGTTATTGATTATCATCCGGGAAAGGCT
* *
72695660 AATGTGAATTCTGGTTATAAGAAGTTGGTTTTATAGGCCATATTGTGTCAGCATCAGATATCCGA
1 AATGTGAATTCTAGTTATAAGAAGTCGGTTTTATAGGCCATATTGTGTCAGCATCAGATATCCGA
72695725 GTTGATCTGAGCAAAATTTTAGCTATTTTGGATTGGAAGCCTCTGAGAAATGTCTCCGAAGTCTG
66 GTTGATCTGAGCAAAATTTTAGCTATTTTGGATTGGAAGCCTCTGAGAAATGTCTCCGAAGTCTG
*
72695790 TAATTTTCTGGGACTTGCCGGTTATTATAGGAGTTTTGTAAAAGGCTTTTTGATGATCACGACTC
131 CAATTTTCTGGGACTTGCCGGTTATTATAGGAGTTTTGTAAAAGGCTTTTTGATGATCACGACTC
* *
72695855 CATTGACGAAACTACCTTAGAAAGATGTGAAATTTGATTGGTTTAAAAAGTGTCAGAAAAGCTTT
196 CATTGACAAAACTACCTTAGAAAGATGTGAAATTTGATTGGTTTAAAAAGTGTCAAAAAAGCTTT
* *
72695920 GATCAGTTGAAAGCTCTATTGACTGAAGCCCCAGTGTTAGTACAACCAGAATAGGTTAAAGAATT
261 GATCAATTGAAAGCTCTATTGACTGAAGCCCCAGTGTTAGTACAACCAGAATAGGGTAAAGAATT
* * *
72695985 TGTGATCTACAGTGATGCTTCATTAAACTGTCTAGGATGTGTTTTGATGCTGGAAGACAAAGTCA
326 TCTGATCTACAGTGATGCTTCATTAAACTGTCTAGGATGTGTTTTGATGCTAGAAGACAAAGTAA
72696050 TTGCTTATGTTTTGAGACAGTTAAAGCCACATGAAAAGAACTAGCCGACGCATGACCTTGAGTTA
391 TTGCTTATGTTTTGAGACAGTTAAAGCCACATGAAAAGAACTAGCCGACGCATGACCTTGAGTTA
72696115 GCTGCGATTGTATTTGCTTTGAAGATTTGGCGCCACTATTGTTTTGGAGAGAAATGTCTCGTATA
456 GCTGCGATTGTATTTGCTTTGAAGATTTGGCGCCACTATTGTTTTGGAGAGAAATGTCTCGTATA
* *
72696180 TTCTGATCATAAGAGTTTGAAATATCTGATGACTCAGAAAGATCTGAATCTGTGACAAAGAAGAC
521 TTCTGATCATAAGAGTTTGAAATATCTGATGACTCAGAAAGATCTAAATATGTGACAAAGAAGAC
72696245 GACTAGAGTTACTGAAAGACTATGAGCTTGTTATTGATTATCATCCGGGAAAGGCT
586 GACTAGAGTTACTGAAAGACTATGAGCTTGTTATTGATTATCATCCGGGAAAGGCT
72696301 AATGT
1 AATGT
72696306 TGTTGCTGAT
Statistics
Matches: 631, Mismatches: 15, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
641 631 1.00
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (641 bp):
AATGTGAATTCTAGTTATAAGAAGTCGGTTTTATAGGCCATATTGTGTCAGCATCAGATATCCGA
GTTGATCTGAGCAAAATTTTAGCTATTTTGGATTGGAAGCCTCTGAGAAATGTCTCCGAAGTCTG
CAATTTTCTGGGACTTGCCGGTTATTATAGGAGTTTTGTAAAAGGCTTTTTGATGATCACGACTC
CATTGACAAAACTACCTTAGAAAGATGTGAAATTTGATTGGTTTAAAAAGTGTCAAAAAAGCTTT
GATCAATTGAAAGCTCTATTGACTGAAGCCCCAGTGTTAGTACAACCAGAATAGGGTAAAGAATT
TCTGATCTACAGTGATGCTTCATTAAACTGTCTAGGATGTGTTTTGATGCTAGAAGACAAAGTAA
TTGCTTATGTTTTGAGACAGTTAAAGCCACATGAAAAGAACTAGCCGACGCATGACCTTGAGTTA
GCTGCGATTGTATTTGCTTTGAAGATTTGGCGCCACTATTGTTTTGGAGAGAAATGTCTCGTATA
TTCTGATCATAAGAGTTTGAAATATCTGATGACTCAGAAAGATCTAAATATGTGACAAAGAAGAC
GACTAGAGTTACTGAAAGACTATGAGCTTGTTATTGATTATCATCCGGGAAAGGCT
Found at i:72699251 original size:43 final size:43
Alignment explanation
Indices: 72699127--72699288 Score: 170
Period size: 43 Copynumber: 3.8 Consensus size: 43
72699117 ATATGTGGTC
* * * *
72699127 TCGTGTACGACAACGTCTGGGACGTTGGCATTGACT-TATGATT
1 TCGTGTAAGACCACGTCTAGGACGTTGGCATTGA-TATTTGATT
* * *
72699170 TACGTGTAAGACCACGTCTGGGACGTTGCCATCG-TATTTGATT
1 T-CGTGTAAGACCACGTCTAGGACGTTGGCATTGATATTTGATT
72699213 TCGTGTAAGACC-CTGTCTAGGACAG-TGGCATTGATATTTGATT
1 TCGTGTAAGACCAC-GTCTAGGAC-GTTGGCATTGATATTTGATT
* * *
72699256 ACATGTAAGACCACGTCTAGGGCGTTGGCATTG
1 TCGTGTAAGACCACGTCTAGGACGTTGGCATTG
72699289 TACGAGCTTT
Statistics
Matches: 101, Mismatches: 11, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
41 1 0.01
42 27 0.27
43 44 0.44
44 29 0.29
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.31
Consensus pattern (43 bp):
TCGTGTAAGACCACGTCTAGGACGTTGGCATTGATATTTGATT
Found at i:72703633 original size:43 final size:43
Alignment explanation
Indices: 72703578--72703745 Score: 282
Period size: 43 Copynumber: 3.9 Consensus size: 43
72703568 GTTGGTATTA
*
72703578 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
1 TATTCGTGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
*
72703621 TATTCATGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
1 TATTCGTGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* *
72703664 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGTGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* *
72703707 TATTCGTGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCGTGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGA
72703746 AATGATATGT
Statistics
Matches: 116, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 116 1.00
ACGTcount: A:0.12, C:0.24, G:0.33, T:0.30
Consensus pattern (43 bp):
TATTCGTGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
Found at i:72704549 original size:232 final size:232
Alignment explanation
Indices: 72704143--72704603 Score: 868
Period size: 232 Copynumber: 2.0 Consensus size: 232
72704133 TATAATGCCG
*
72704143 GTGAACTGATATCGGGCCTCGAGCCTAACAGGCGAAATGCCGGTGATTTGAGAAAAGTGCATGAC
1 GTGAACTGATATCGGGCCTCGAGCCTAACAGGCGAAATGCCGGTGATTTGAGAAAAGTCCATGAC
* *
72704208 TAAGGTACCTCGTGTTAGGTTGACAAATGAATACATTCAGTATGTTAAGTGGGCCATGTACGCAT
66 TAAGGTACCTCGTGTTAGGTTGACAAATGAATACATTCAGTACGTTAAGTGGGCCAGGTACGCAT
*
72704273 TCTGTACTCATATGTGAGTTTGATCTGCAATGAATCATAAGCGTGCATTGTGATACATATGTGAA
131 TCTGTACTCATATGTGAGTTTGATCTGCAATGAATCATAAGCGTGCATTGTGATACATACGTGAA
72704338 TAAATGTTATAACTATATCTATGATCATGATACATAC
196 TAAATGTTATAACTATATCTATGATCATGATACATAC
*
72704375 GTGAACTGATATCGGGCCTCGAGCCTAACAGGCGAAATGCCGGTGATTTGAGAAATGTCCATGAC
1 GTGAACTGATATCGGGCCTCGAGCCTAACAGGCGAAATGCCGGTGATTTGAGAAAAGTCCATGAC
*
72704440 TAAGGTACCTCGTGTTAGGTTGACAAATGAATACGTTCAGTACGTTAAGTGGGCCAGGTACGCAT
66 TAAGGTACCTCGTGTTAGGTTGACAAATGAATACATTCAGTACGTTAAGTGGGCCAGGTACGCAT
72704505 TCTGTACTCATATGTGAGTTTGATCTGCAATGAATCATAAGCGTGCATTGTGATACATACGTGAA
131 TCTGTACTCATATGTGAGTTTGATCTGCAATGAATCATAAGCGTGCATTGTGATACATACGTGAA
72704570 TAAATGTTATAACTATATCTATGATCATGATACA
196 TAAATGTTATAACTATATCTATGATCATGATACA
72704604 CCGGGTCAGG
Statistics
Matches: 223, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
232 223 1.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (232 bp):
GTGAACTGATATCGGGCCTCGAGCCTAACAGGCGAAATGCCGGTGATTTGAGAAAAGTCCATGAC
TAAGGTACCTCGTGTTAGGTTGACAAATGAATACATTCAGTACGTTAAGTGGGCCAGGTACGCAT
TCTGTACTCATATGTGAGTTTGATCTGCAATGAATCATAAGCGTGCATTGTGATACATACGTGAA
TAAATGTTATAACTATATCTATGATCATGATACATAC
Found at i:72710506 original size:40 final size:40
Alignment explanation
Indices: 72710449--72710548 Score: 119
Period size: 40 Copynumber: 2.5 Consensus size: 40
72710439 ATTGAATGAT
* * * * *
72710449 ATCCGGGTTAAGTCCCGAATACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGACAATTATGCTAGTAACTAC
* * *
72710489 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGACAATTATGCTAGTAACTAC
*
72710529 ATCCGGGCTAAGACCCGAAG
1 ATCCGGGTTAAGACCCGAAG
72710549 GCATTTGTGC
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (40 bp):
ATCCGGGTTAAGACCCGAAGACAATTATGCTAGTAACTAC
Found at i:72710573 original size:40 final size:42
Alignment explanation
Indices: 72710487--72710603 Score: 154
Period size: 40 Copynumber: 2.9 Consensus size: 42
72710477 GCTGGTAATT
* *
72710487 ACATCCGGGTTAAGACCCGAAGGCAATTGTGC---TAGTGAC
1 ACATCCGGGTTAAGACCCGAAGGCATTTGTGCAAATTGTGAC
*
72710526 TACATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-
1 -ACATCCGGGTTAAGACCCGAAGGCATTTGTGCAAATTGTGAC
*
72710568 A-ATCCGGGTTAAGTCCCGAAGGCATTTGTGCAAATT
1 ACATCCGGGTTAAGACCCGAAGGCATTTGTGCAAATT
72710604 ACCATAACCG
Statistics
Matches: 69, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
40 63 0.91
41 1 0.01
43 5 0.07
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.24
Consensus pattern (42 bp):
ACATCCGGGTTAAGACCCGAAGGCATTTGTGCAAATTGTGAC
Found at i:72710615 original size:40 final size:39
Alignment explanation
Indices: 72710491--72710635 Score: 128
Period size: 40 Copynumber: 3.6 Consensus size: 39
72710481 GTAATTACAT
* * * * * * *
72710491 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTACAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAATTACCA-AA
***
72710531 CCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGAAA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAATTACCAAA
* *
72710570 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAATTACCATAA
1 -CCGGGCTAAGACCCGAAGGCATTTGTGCAAATTACCA-AA
* * *
72710611 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGACCCGAAGGCATTTG
72710636 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 1 0.01
40 83 0.97
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAATTACCAAA
Found at i:72717955 original size:40 final size:40
Alignment explanation
Indices: 72717847--72717956 Score: 139
Period size: 40 Copynumber: 2.8 Consensus size: 40
72717837 ATTGAATGAT
* * * * * *
72717847 ATCCGGGTTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGATAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* *
72717887 ATCCGGGATAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGATAAGACCCGAAGGCATTTGTGCTAGTAACTAC
*
72717927 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGATAAGACCCGAAGGCATTTGTGC
72717957 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGATAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:72717971 original size:40 final size:39
Alignment explanation
Indices: 72717847--72717996 Score: 124
Period size: 40 Copynumber: 3.8 Consensus size: 39
72717837 ATTGAATGAT
* * * * * * *
72717847 ATCCGGGTTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGATAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
72717887 ATCCGGGATAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGATAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
72717927 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGATAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* * *
72717967 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGATAAGACCCGAAGGCATTTGTGC
72717997 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGATAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:72719479 original size:43 final size:42
Alignment explanation
Indices: 72719422--72719504 Score: 148
Period size: 43 Copynumber: 2.0 Consensus size: 42
72719412 GTGTTACAGC
72719422 CTTCGTGCGGTGATGTGTATTCGGGCCTTCATGCCTAGCAAG
1 CTTCGTGCGGTGATGTGTATTCGGGCCTTCATGCCTAGCAAG
*
72719464 CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCA
1 CTTCGTG-CGGTGATGTGTATTCGGGCCTTCATGCCTAGCA
72719505 GGCGTAATGC
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
42 7 0.18
43 32 0.82
ACGTcount: A:0.12, C:0.25, G:0.31, T:0.31
Consensus pattern (42 bp):
CTTCGTGCGGTGATGTGTATTCGGGCCTTCATGCCTAGCAAG
Found at i:72719516 original size:43 final size:43
Alignment explanation
Indices: 72719429--72719520 Score: 139
Period size: 43 Copynumber: 2.1 Consensus size: 43
72719419 AGCCTTCGTG
* **
72719429 CGGTGATGTGTATTCGGGCCTTCATGCCTAGCAAGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCATGCCTAGCAAGCGTAATGC
* *
72719472 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCGTAATGC
1 CGGTGATGTGTATTCGGGCCTTCATGCCTAGCAAGCGTAATGC
72719515 CGGTGA
1 CGGTGA
72719521 AATGATATGT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.14, C:0.24, G:0.34, T:0.28
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCATGCCTAGCAAGCGTAATGC
Found at i:72724715 original size:24 final size:24
Alignment explanation
Indices: 72724679--72724730 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
72724669 CACAAACACA
*
72724679 GCTCTTCATGAGCATCCTGATATAG
1 GCTCTTCATGAGCATCCTGACAT-G
*
72724704 GCTCTT-ATGAGCTTCCTGACATG
1 GCTCTTCATGAGCATCCTGACATG
72724727 GCTC
1 GCTC
72724731 ACTTGAACTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 5 0.20
24 14 0.56
25 6 0.24
ACGTcount: A:0.19, C:0.27, G:0.21, T:0.33
Consensus pattern (24 bp):
GCTCTTCATGAGCATCCTGACATG
Found at i:72729200 original size:24 final size:24
Alignment explanation
Indices: 72729168--72729374 Score: 351
Period size: 24 Copynumber: 8.6 Consensus size: 24
72729158 TATCTCAAAT
*
72729168 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
72729192 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
72729216 GCACTACGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
72729240 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
72729264 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
72729288 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
72729312 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
72729336 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
72729360 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
72729375 ACATAATAAG
Statistics
Matches: 177, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 177 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:72731837 original size:27 final size:28
Alignment explanation
Indices: 72731781--72731850 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
72731771 AAATTTGTAC
72731781 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
**
72731809 AGCACTAAGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
72731836 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72731851 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:72733361 original size:33 final size:33
Alignment explanation
Indices: 72733307--72733382 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
72733297 AGGCCCTGCC
* *
72733307 ATGGTCTT-TCATTCACATGCCATAACCCGGTT
1 ATGGTCTTATTATTCACATGCCATAACCCGGCT
** *
72733339 ATGGTCTTATTATTCAGTTGCCATAGCCCGGCT
1 ATGGTCTTATTATTCACATGCCATAACCCGGCT
72733372 ATGGTCTTATT
1 ATGGTCTTATT
72733383 TGGCAACTTG
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
32 8 0.21
33 30 0.79
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (33 bp):
ATGGTCTTATTATTCACATGCCATAACCCGGCT
Found at i:72741883 original size:21 final size:21
Alignment explanation
Indices: 72741859--72741901 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
72741849 ACAACATCAT
*
72741859 TCACACACTTGACATGATAAG
1 TCACACACTTGACATAATAAG
72741880 TCACACACTTGACATAATAAG
1 TCACACACTTGACATAATAAG
72741901 T
1 T
72741902 AATCATATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.40, C:0.23, G:0.12, T:0.26
Consensus pattern (21 bp):
TCACACACTTGACATAATAAG
Found at i:72749561 original size:38 final size:38
Alignment explanation
Indices: 72749519--72749727 Score: 175
Period size: 38 Copynumber: 5.0 Consensus size: 38
72749509 TTTCAAATTA
*
72749519 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
*
72749557 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACG-T--T
* *
72749598 GAATCGATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGTATATCCACTTAGCACCACGTT
* *
72749642 ACATGTATCAATATGTGTAATCGTGGTATATCCACTTAGCACCACATT
1 ACATG------TA----TAACCGTGGTATATCCACTTAGCACCACGTT
* *
72749690 ACACGTTTAACCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
72749728 TTTCCATTCC
Statistics
Matches: 141, Mismatches: 13, Indels: 34
0.75 0.07 0.18
Matches are distributed among these distances:
38 63 0.45
39 1 0.01
40 2 0.01
41 2 0.01
42 2 0.01
43 1 0.01
44 2 0.01
45 3 0.02
46 3 0.02
47 28 0.20
48 34 0.24
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
Found at i:72749680 original size:48 final size:48
Alignment explanation
Indices: 72749559--72749692 Score: 198
Period size: 48 Copynumber: 2.8 Consensus size: 48
72749549 ACCACGTTAC
* *
72749559 ATGTTTAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCGAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAAT
* * *
72749606 ATATGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAAT
* *
72749654 ATGTGTAATCGTGGTATATCCACTTAGCACCACATTACA
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACA
72749693 CGTTTAACCG
Statistics
Matches: 77, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
47 34 0.44
48 43 0.56
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.31
Consensus pattern (48 bp):
ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAAT
Found at i:72756825 original size:16 final size:16
Alignment explanation
Indices: 72756804--72756834 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72756794 CAATGGAATA
*
72756804 GAATAGGGTTGTAATG
1 GAATAGAGTTGTAATG
72756820 GAATAGAGTTGTAAT
1 GAATAGAGTTGTAAT
72756835 CAATAATTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.32, T:0.32
Consensus pattern (16 bp):
GAATAGAGTTGTAATG
Found at i:72763582 original size:93 final size:93
Alignment explanation
Indices: 72763470--72763640 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
72763460 GCCCATAAGT
* *
72763470 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72763535 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
72763563 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72763628 CGAGTTCGGATGC
66 CGAGTTCGGATGC
72763641 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72763637 original size:46 final size:46
Alignment explanation
Indices: 72763462--72763637 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
72763452 TGTAACCCGC
* * *
72763462 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
72763508 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
72763558 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
72763601 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72763638 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:72766057 original size:30 final size:30
Alignment explanation
Indices: 72766013--72766101 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
72766003 CAAAGATAAC
72766013 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
72766042 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
72766072 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
72766102 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:72766061 original size:15 final size:15
Alignment explanation
Indices: 72766013--72766092 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
72766003 CAAAGATAAC
*
72766013 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
72766027 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
72766042 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
72766057 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
72766072 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
72766087 AAGAAA
1 AAGAAA
72766093 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:72766101 original size:15 final size:15
Alignment explanation
Indices: 72766024--72766101 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
72766014 AGAAAACCGA
72766024 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
72766039 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
72766053 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
72766068 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
72766084 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
72766099 ATA
1 ATA
72766102 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:72769116 original size:46 final size:46
Alignment explanation
Indices: 72769049--72769222 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
72769039 TGTAACCCGC
*
72769049 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
72769095 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
72769145 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
72769187 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
72769223 ATGCTCAACC
Statistics
Matches: 110, Mismatches: 9, Indels: 19
0.80 0.07 0.14
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 1 0.01
44 3 0.03
45 28 0.25
46 35 0.32
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:72769215 original size:92 final size:93
Alignment explanation
Indices: 72769057--72769226 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
72769047 GCCCATAAGT
* *
72769057 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
72769122 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
72769150 GAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
72769214 CGAGTTCGGATGC
66 CGAGTTCGGATGC
72769227 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 46 0.62
93 28 0.38
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72771631 original size:30 final size:30
Alignment explanation
Indices: 72771587--72771675 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
72771577 CAAAGATAAC
72771587 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
72771616 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
72771646 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
72771676 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:72771635 original size:15 final size:15
Alignment explanation
Indices: 72771587--72771666 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
72771577 CAAAGATAAC
*
72771587 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
72771601 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
72771616 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
72771631 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
72771646 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
72771661 AAGAAA
1 AAGAAA
72771667 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:72771675 original size:15 final size:15
Alignment explanation
Indices: 72771598--72771675 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
72771588 AGAAAACCGA
72771598 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
72771613 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
72771627 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
72771642 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
72771658 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
72771673 ATA
1 ATA
72771676 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:72774745 original size:93 final size:93
Alignment explanation
Indices: 72774633--72774803 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
72774623 GCCCATAAGT
* *
72774633 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72774698 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
72774726 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72774791 CGAGTTCGGATGC
66 CGAGTTCGGATGC
72774804 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72774800 original size:46 final size:46
Alignment explanation
Indices: 72774625--72774800 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
72774615 TGTAACCCGC
* * *
72774625 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
72774671 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
72774721 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
72774764 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72774801 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:72782186 original size:28 final size:27
Alignment explanation
Indices: 72782123--72782192 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
72782113 ATAGTGAGTC
*
72782123 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
72782150 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
*
72782178 CGCACACTTAATGCT
1 CGCACACTTAGTGCT
72782193 GTACAAATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.54
28 18 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:72787527 original size:18 final size:18
Alignment explanation
Indices: 72787504--72787601 Score: 117
Period size: 18 Copynumber: 5.4 Consensus size: 18
72787494 ATATGAAAAC
*
72787504 AAAATAAACATGAAA-AGA
1 AAAATAAAAAT-AAACAGA
*
72787522 AAAATAAAAATAAACATA
1 AAAATAAAAATAAACAGA
* *
72787540 AAAATAAACATAAAGAGA
1 AAAATAAAAATAAACAGA
*
72787558 AAAATAAAAATAAACATA
1 AAAATAAAAATAAACAGA
*
72787576 AAAATAAAAATAAACATA
1 AAAATAAAAATAAACAGA
*
72787594 AAGATAAA
1 AAAATAAA
72787602 TGGACTCAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
17 3 0.04
18 67 0.96
ACGTcount: A:0.76, C:0.05, G:0.05, T:0.14
Consensus pattern (18 bp):
AAAATAAAAATAAACAGA
Found at i:72787531 original size:12 final size:12
Alignment explanation
Indices: 72787504--72787601 Score: 106
Period size: 12 Copynumber: 8.2 Consensus size: 12
72787494 ATATGAAAAC
* *
72787504 AAAATAAACATG
1 AAAATAAAAATA
*
72787516 AAAAGAAAAATA
1 AAAATAAAAATA
*
72787528 AAAATAAACATA
1 AAAATAAAAATA
*
72787540 AAAATAAACATA
1 AAAATAAAAATA
* *
72787552 AAGAGAAAAATA
1 AAAATAAAAATA
*
72787564 AAAATAAACATA
1 AAAATAAAAATA
72787576 AAAATAAAAATA
1 AAAATAAAAATA
* *
72787588 AACATAAAGATA
1 AAAATAAAAATA
72787600 AA
1 AA
72787602 TGGACTCAAT
Statistics
Matches: 72, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 72 1.00
ACGTcount: A:0.76, C:0.05, G:0.05, T:0.14
Consensus pattern (12 bp):
AAAATAAAAATA
Found at i:72787544 original size:36 final size:36
Alignment explanation
Indices: 72787504--72787589 Score: 147
Period size: 36 Copynumber: 2.4 Consensus size: 36
72787494 ATATGAAAAC
72787504 AAAATAAACATGAAA-AGAAAAATAAAAATAAACATA
1 AAAATAAACAT-AAAGAGAAAAATAAAAATAAACATA
72787540 AAAATAAACATAAAGAGAAAAATAAAAATAAACATA
1 AAAATAAACATAAAGAGAAAAATAAAAATAAACATA
*
72787576 AAAATAAAAATAAA
1 AAAATAAACATAAA
72787590 CATAAAGATA
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
35 3 0.06
36 45 0.94
ACGTcount: A:0.77, C:0.05, G:0.05, T:0.14
Consensus pattern (36 bp):
AAAATAAACATAAAGAGAAAAATAAAAATAAACATA
Found at i:72789264 original size:21 final size:21
Alignment explanation
Indices: 72789230--72789292 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 21
72789220 ATGAAATAAC
*
72789230 AAAT-AAGAATTAAAGAAAGA
1 AAATAAAGAAATAAAGAAAGA
*
72789250 AAATAAAGAAATAAAGAATGA
1 AAATAAAGAAATAAAGAAAGA
*
72789271 AAATGAAACAAAAATAAAGAAA
1 AAAT--AA-AGAAATAAAGAAA
72789293 AAGTTAAGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
20 4 0.11
21 18 0.51
23 2 0.06
24 11 0.31
ACGTcount: A:0.73, C:0.02, G:0.13, T:0.13
Consensus pattern (21 bp):
AAATAAAGAAATAAAGAAAGA
Found at i:72794237 original size:93 final size:93
Alignment explanation
Indices: 72794125--72794296 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
72794115 CGCCCATAAG
*
72794125 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCAGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCAGACTCAACTC
72794189 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* *
72794218 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
72794283 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
72794297 TGAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:72794291 original size:46 final size:46
Alignment explanation
Indices: 72794118--72794293 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
72794108 TGTAACCCGC
* *
72794118 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* * *
72794164 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
72794214 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
72794257 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
72794294 TGCTGAACCA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 60 0.55
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:72804271 original size:26 final size:26
Alignment explanation
Indices: 72804235--72804291 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
72804225 CGCTGAGTAG
72804235 ACACTCAGTGGTATTTCTATAAACCA
1 ACACTCAGTGGTATTTCTATAAACCA
72804261 ACACTCAGTGGTATTTCTATAAACCA
1 ACACTCAGTGGTATTTCTATAAACCA
*
72804287 GCACT
1 ACACT
72804292 TAAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (26 bp):
ACACTCAGTGGTATTTCTATAAACCA
Found at i:72805879 original size:9 final size:9
Alignment explanation
Indices: 72805867--72805926 Score: 56
Period size: 9 Copynumber: 6.9 Consensus size: 9
72805857 CTGCTGTTCT
*
72805867 TTTTGTTTC
1 TTTTATTTC
*
72805876 TTTTACTT-
1 TTTTATTTC
72805884 TTTT-TTTC
1 TTTTATTTC
72805892 TTTTATTTC
1 TTTTATTTC
72805901 -TTTAGTTTC
1 TTTTA-TTTC
72805910 TTTTATTTAC
1 TTTTATTT-C
72805920 -TTTATTT
1 TTTTATTT
72805927 TATTTACTGT
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
7 2 0.05
8 12 0.28
9 24 0.56
10 5 0.12
ACGTcount: A:0.10, C:0.10, G:0.03, T:0.77
Consensus pattern (9 bp):
TTTTATTTC
Found at i:72805927 original size:14 final size:14
Alignment explanation
Indices: 72805910--72805939 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
72805900 CTTTAGTTTC
*
72805910 TTTTATTTACTTTA
1 TTTTATTTACTGTA
72805924 TTTTATTTACTGTA
1 TTTTATTTACTGTA
72805938 TT
1 TT
72805940 GTTTTAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.07, G:0.03, T:0.70
Consensus pattern (14 bp):
TTTTATTTACTGTA
Found at i:72809010 original size:28 final size:27
Alignment explanation
Indices: 72808947--72809016 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
72808937 ATAGTGAGTC
*
72808947 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
72808974 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
*
72809002 CTCACACTTAGTGCT
1 CGCACACTTAGTGCT
72809017 GTACAAATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.54
28 18 0.46
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:72815742 original size:44 final size:44
Alignment explanation
Indices: 72815663--72815752 Score: 112
Period size: 44 Copynumber: 2.0 Consensus size: 44
72815653 TTGGATTAAA
*
72815663 TCGAAGTAATAGTAACAGTACGACACACAAGGTGCCTCATTGAC
1 TCGAAGTAATAGTAACAGTACGACACACAAGGTGCCTCATCGAC
* **
72815707 TCGAAGTCAA-AGTAACAGTACGGCACTTATA-GTGCCTCATCGAC
1 TCGAAGT-AATAGTAACAGTACGACACACA-AGGTGCCTCATCGAC
72815751 TC
1 TC
72815753 AAGGTCGAAG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
44 37 0.93
45 3 0.08
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.22
Consensus pattern (44 bp):
TCGAAGTAATAGTAACAGTACGACACACAAGGTGCCTCATCGAC
Found at i:72816647 original size:20 final size:20
Alignment explanation
Indices: 72816614--72816678 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
72816604 GGCTTCTGCT
72816614 GTTC-TTTTTGTTTCTTTTA
1 GTTCTTTTTTGTTTCTTTTA
*
72816633 GTTCTTTTTTTTTTCTTTTA
1 GTTCTTTTTTGTTTCTTTTA
* *
72816653 CTTC--TTTAGTTTCTTTTA
1 GTTCTTTTTTGTTTCTTTTA
72816671 GTTACTTT
1 GTT-CTTT
72816679 ACTTTATTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
18 14 0.38
19 5 0.14
20 17 0.46
21 1 0.03
ACGTcount: A:0.08, C:0.12, G:0.08, T:0.72
Consensus pattern (20 bp):
GTTCTTTTTTGTTTCTTTTA
Found at i:72816670 original size:10 final size:10
Alignment explanation
Indices: 72816615--72816678 Score: 53
Period size: 10 Copynumber: 6.6 Consensus size: 10
72816605 GCTTCTGCTG
*
72816615 TTCTTTTTGT
1 TTCTTTTAGT
72816625 TTCTTTTAG-
1 TTCTTTTAGT
**
72816634 TTCTTTTTTTT
1 TTC-TTTTAGT
*
72816645 TTCTTTTA-C
1 TTCTTTTAGT
72816654 TTC-TTTAGT
1 TTCTTTTAGT
72816663 TTCTTTTAGT
1 TTCTTTTAGT
*
72816673 TACTTT
1 TTCTTT
72816679 ACTTTATTTA
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
8 4 0.09
9 9 0.21
10 27 0.63
11 3 0.07
ACGTcount: A:0.08, C:0.12, G:0.06, T:0.73
Consensus pattern (10 bp):
TTCTTTTAGT
Found at i:72817565 original size:3 final size:3
Alignment explanation
Indices: 72817557--72817604 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
72817547 TTGCTAATGC
72817557 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
72817605 AAACTTCAGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:72824039 original size:18 final size:17
Alignment explanation
Indices: 72824012--72824045 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
72824002 CTACATCCAT
72824012 AAACAAAAAAAAAGGCC
1 AAACAAAAAAAAAGGCC
72824029 AAACAAAAAAAAAGGCC
1 AAACAAAAAAAAAGGCC
72824046 TCCTTAATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.71, C:0.18, G:0.12, T:0.00
Consensus pattern (17 bp):
AAACAAAAAAAAAGGCC
Found at i:72827112 original size:22 final size:22
Alignment explanation
Indices: 72827087--72827163 Score: 64
Period size: 22 Copynumber: 3.2 Consensus size: 22
72827077 AAGCTTGCAA
72827087 ATATTAACTTAAAAAACTCATT
1 ATATTAACTTAAAAAACTCATT
* * *
72827109 ATATTTAACATGAATATATAATATAATT
1 ATA-TTAAC-TTAA-A-A-AA-CTCATT
*
72827137 ATAATAACTTAAAAAACTCATT
1 ATATTAACTTAAAAAACTCATT
72827159 ATATT
1 ATATT
72827164 TAACATGAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
22 11 0.27
23 7 0.17
24 4 0.10
25 2 0.05
26 4 0.10
27 6 0.15
28 7 0.17
ACGTcount: A:0.51, C:0.09, G:0.01, T:0.39
Consensus pattern (22 bp):
ATATTAACTTAAAAAACTCATT
Found at i:72827166 original size:50 final size:50
Alignment explanation
Indices: 72827091--72827191 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
72827081 TTGCAAATAT
72827091 TAACTTAAAAAACTCATTATATTTAACATGAATATATAATATAATTATAA
1 TAACTTAAAAAACTCATTATATTTAACATGAATATATAATATAATTATAA
*
72827141 TAACTTAAAAAACTCATTATATTTAACATGAATGTATAATATAATTATAA
1 TAACTTAAAAAACTCATTATATTTAACATGAATATATAATATAATTATAA
72827191 T
1 T
72827192 TAAAATTTAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.50, C:0.08, G:0.03, T:0.39
Consensus pattern (50 bp):
TAACTTAAAAAACTCATTATATTTAACATGAATATATAATATAATTATAA
Found at i:72827188 original size:28 final size:27
Alignment explanation
Indices: 72827106--72827194 Score: 73
Period size: 28 Copynumber: 3.4 Consensus size: 27
72827096 TAAAAAACTC
72827106 ATTATATTTAACATGAATATATAATATA
1 ATTATATTTAACATGAAT-TATAATATA
* * *
72827134 ATTATA-ATAAC-TTAA--A-AA-ACTC
1 ATTATATTTAACATGAATTATAATA-TA
72827156 ATTATATTTAACATGAATGTATAATATA
1 ATTATATTTAACATGAAT-TATAATATA
*
72827184 ATTATAATTAA
1 ATTATATTTAA
72827195 AATTTAATAA
Statistics
Matches: 46, Mismatches: 7, Indels: 16
0.67 0.10 0.23
Matches are distributed among these distances:
21 1 0.02
22 9 0.20
23 5 0.11
24 3 0.07
26 3 0.07
27 5 0.11
28 19 0.41
29 1 0.02
ACGTcount: A:0.51, C:0.06, G:0.03, T:0.40
Consensus pattern (27 bp):
ATTATATTTAACATGAATTATAATATA
Found at i:72828727 original size:30 final size:30
Alignment explanation
Indices: 72828670--72828727 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
72828660 TAGGCACTTC
* *
72828670 CACACGGGTGAGCCACACACTCGTGTGTGA
1 CACACGGGTGAGCCACACACCCATGTGTGA
*
72828700 CACACGGGT-AGACCACACGCCCATGTGT
1 CACACGGGTGAG-CCACACACCCATGTGT
72828728 CATGGCCGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.24, C:0.33, G:0.28, T:0.16
Consensus pattern (30 bp):
CACACGGGTGAGCCACACACCCATGTGTGA
Found at i:72838046 original size:17 final size:17
Alignment explanation
Indices: 72838023--72838061 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
72838013 AGTCCATTTA
72838023 ATTTTCAATTTATTTTT
1 ATTTTCAATTTATTTTT
* *
72838040 CTTTTCATTTTATTTTT
1 ATTTTCAATTTATTTTT
72838057 ATTTT
1 ATTTT
72838062 AGCATTTCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (17 bp):
ATTTTCAATTTATTTTT
Found at i:72838093 original size:24 final size:24
Alignment explanation
Indices: 72838031--72838095 Score: 62
Period size: 24 Copynumber: 2.8 Consensus size: 24
72838021 TAATTTTCAA
* * *
72838031 TTTATTTTTC-TTTTCATTTTATT
1 TTTATTTATCATTTTCTTTTTATC
* *
72838054 TTTATTTTAGCA-TTTCTTTTTGTC
1 TTTA-TTTATCATTTTCTTTTTATC
72838078 TTTATTTATCATTTTCTT
1 TTTATTTATCATTTTCTT
72838096 AAAATACTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
23 10 0.30
24 23 0.70
ACGTcount: A:0.14, C:0.11, G:0.03, T:0.72
Consensus pattern (24 bp):
TTTATTTATCATTTTCTTTTTATC
Found at i:72856513 original size:50 final size:50
Alignment explanation
Indices: 72856438--72856536 Score: 180
Period size: 50 Copynumber: 2.0 Consensus size: 50
72856428 TTAATATATT
*
72856438 TTTGGCAATTAATTTTCAAGTCAGACAAGTGGCCCAATGGGTGATTGAAA
1 TTTGGCAATTAATTTTCAAGTCAGACAAGTGGCCCAATGAGTGATTGAAA
*
72856488 TTTGGGAATTAATTTTCAAGTCAGACAAGTGGCCCAATGAGTGATTGAA
1 TTTGGCAATTAATTTTCAAGTCAGACAAGTGGCCCAATGAGTGATTGAA
72856537 CTTGAAAATT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.30
Consensus pattern (50 bp):
TTTGGCAATTAATTTTCAAGTCAGACAAGTGGCCCAATGAGTGATTGAAA
Found at i:72856708 original size:34 final size:34
Alignment explanation
Indices: 72856665--72856729 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
72856655 GTAACTGGCT
72856665 CGAACAGAACCGATAGAAATCGAACCAACTCACC
1 CGAACAGAACCGATAGAAATCGAACCAACTCACC
72856699 CGAACAGAACCGATAGAAATCGAACCAACTC
1 CGAACAGAACCGATAGAAATCGAACCAACTC
72856730 GAGTGTCGGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.45, C:0.31, G:0.15, T:0.09
Consensus pattern (34 bp):
CGAACAGAACCGATAGAAATCGAACCAACTCACC
Found at i:72857489 original size:49 final size:49
Alignment explanation
Indices: 72857436--72857584 Score: 122
Period size: 49 Copynumber: 3.0 Consensus size: 49
72857426 ACCATCTCGA
** *
72857436 GTGGCCCGGCAACGATGATTTTCACTAATTT-TATATTCTACCATCCCAG
1 GTGGCCCAACAACGATGATTTTCAC-AATTTGCATATTCTACCATCCCAG
* * * ***
72857485 GTGGCGCAACAATGATGGTTTTCACAATTTGCATATTCTACCATCTTGG
1 GTGGCCCAACAACGATGATTTTCACAATTTGCATATTCTACCATCCCAG
* * ** ** *
72857534 GTGGCTCGAA-AATGATGGCTTTCACTGTTTGCATATCCTACCATCCCAG
1 GTGGC-CCAACAACGATGATTTTCACAATTTGCATATTCTACCATCCCAG
72857583 GT
1 GT
72857585 TGCCTGATAA
Statistics
Matches: 80, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
48 5 0.06
49 73 0.91
50 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.33
Consensus pattern (49 bp):
GTGGCCCAACAACGATGATTTTCACAATTTGCATATTCTACCATCCCAG
Found at i:72859451 original size:16 final size:16
Alignment explanation
Indices: 72859430--72859462 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
72859420 TATTATTTTC
*
72859430 TTATATATTATGAAAT
1 TTATATAATATGAAAT
72859446 TTATATAATATGAAAT
1 TTATATAATATGAAAT
72859462 T
1 T
72859463 GAAATATACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (16 bp):
TTATATAATATGAAAT
Found at i:72867760 original size:43 final size:42
Alignment explanation
Indices: 72867713--72867822 Score: 132
Period size: 43 Copynumber: 2.5 Consensus size: 42
72867703 ATTGATGCAT
72867713 TGTGTGTTCTAGTATAGTTACTTCGATATACCTGATCATGTAC
1 TGTGTGTTCTAGTATAGTT-CTTCGATATACCTGATCATGTAC
* * * *
72867756 TGTGTGTGTC-AGTATAGTTGTCTCGATTTATCTGATGATGTAC
1 TGTGTGT-TCTAGTATAGTTCT-TCGATATACCTGATCATGTAC
*
72867799 TGTGTGTGCTAGTATAGTTTCTTC
1 TGTGTGTTCTAGTATAG-TTCTTC
72867823 TCTTTTCGAT
Statistics
Matches: 57, Mismatches: 6, Indels: 8
0.80 0.08 0.11
Matches are distributed among these distances:
42 2 0.04
43 50 0.88
44 5 0.09
ACGTcount: A:0.19, C:0.14, G:0.23, T:0.45
Consensus pattern (42 bp):
TGTGTGTTCTAGTATAGTTCTTCGATATACCTGATCATGTAC
Found at i:72867847 original size:86 final size:84
Alignment explanation
Indices: 72867673--72868094 Score: 356
Period size: 86 Copynumber: 4.9 Consensus size: 84
72867663 TAAAATATTG
* * *
72867673 GTGTGCCAGTATAGTTGCTTC-AGTTTATCT-ATTGATGCATTGTGTGTTCTAGTATAGTTACTT
1 GTGTGCCAATATAGTTGC-TCGA-TTTATCTGA-TGATGCATTGTGTGTGCCAGTATAGTTACTT
* * *
72867736 CG-ATATACCTGATCATGTACTGT
63 CGTATAT-TC-GATGATGCACTGT
* * * * * *
72867759 GTGTGTCAGTATAGTTGTCTCGATTTATCTGATGATGTACTGTGTGTGCTAGTATAGTTTCTTC-
1 GTGTGCCAATATAGTTG-CTCGATTTATCTGATGATGCATTGTGTGTGCCAGTATAGTTACTTCG
* * * *
72867823 TCTTTTCGATAATGCACTGC
65 TATATTCGATGATGCACTGT
* * *
72867843 GTGTGCCAATATAATTGCTACTG-TTTATCAGATGATGCATAGTGTGTGCCAGTATAGTTACTTC
1 GTGTGCCAATATAGTTGCT-C-GATTTATCTGATGATGCATTGTGTGTGCCAGTATAGTTACTTC
72867907 GGTATATTCGATGATGCACTGT
64 -GTATATTCGATGATGCACTGT
* * * * * * * * * *
72867929 ATATGCCAGTATAGTTGTTTC-AGTATATCTGATGATGTATTATGTATGCTAGTATGGTTACTTC
1 GTGTGCCAATATAGTTG-CTCGA-TTTATCTGATGATGCATTGTGTGTGCCAGTATAGTTACTTC
* *
72867993 GGTATATCCAATGATGCACTGT
64 -GTATATTCGATGATGCACTGT
* *
72868015 GTGTGTCAATATAGTTGCTTCGGTTTATC-GATGATGCATTGTGTGTGCCAGTATAGTTACTTCG
1 GTGTGCCAATATAGTTGC-TCGATTTATCTGATGATGCATTGTGTGTGCCAGTATAGTTACTTC-
72868079 GTATA-TCTGATGATGC
64 GTATATTC-GATGATGC
72868095 GTTACGAAGC
Statistics
Matches: 269, Mismatches: 53, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
83 2 0.01
84 61 0.23
85 44 0.16
86 158 0.59
87 4 0.01
ACGTcount: A:0.22, C:0.14, G:0.23, T:0.41
Consensus pattern (84 bp):
GTGTGCCAATATAGTTGCTCGATTTATCTGATGATGCATTGTGTGTGCCAGTATAGTTACTTCGT
ATATTCGATGATGCACTGT
Found at i:72867881 original size:43 final size:42
Alignment explanation
Indices: 72867754--72868069 Score: 127
Period size: 43 Copynumber: 7.4 Consensus size: 42
72867744 CTGATCATGT
* * *
72867754 ACTGTGTGTGTCAGTATAGTTG-T-CTCGATTTATCTGATGATGT
1 ACTGTGTGTGCCAGTATAATTGCTACTC--TTTATC-GATGATGC
* * * * *
72867797 ACTGTGTGTGCTAGTATAGTTTCTTCTCTTT-TCGATAATGC
1 ACTGTGTGTGCCAGTATAATTGCTACTCTTTATCGATGATGC
* * *
72867838 ACTGCGTGTGCCAATATAATTGCTACTGTTTATCAGATGATGC
1 ACTGTGTGTGCCAGTATAATTGCTACTCTTTATC-GATGATGC
* * * ** *
72867881 A-TAGTGTGTGCCAGTATAGTTACTTCGGTATATTCGATGATGC
1 ACT-GTGTGTGCCAGTATAATTGCTACTCTTTA-TCGATGATGC
* * * * * ** * *
72867924 ACTGTATATGCCAGTATAGTTGTTTCAGTATATCTGATGATGT
1 ACTGTGTGTGCCAGTATAATTGCTACTCTTTATC-GATGATGC
* * * * ** * * ** * *
72867967 ATTATGTATGCTAGTATGGTTACTTCGGTATATCCAATGATGC
1 ACTGTGTGTGCCAGTATAATTGCTACTCTTTAT-CGATGATGC
* * * * **
72868010 ACTGTGTGTGTCAATATAGTTGCTTCGGTTTATCGATGATGC
1 ACTGTGTGTGCCAGTATAATTGCTACTCTTTATCGATGATGC
*
72868052 ATTGTGTGTGCCAGTATA
1 ACTGTGTGTGCCAGTATA
72868070 GTTACTTCGG
Statistics
Matches: 215, Mismatches: 49, Indels: 19
0.76 0.17 0.07
Matches are distributed among these distances:
41 30 0.14
42 30 0.14
43 147 0.68
44 5 0.02
45 3 0.01
ACGTcount: A:0.22, C:0.14, G:0.23, T:0.41
Consensus pattern (42 bp):
ACTGTGTGTGCCAGTATAATTGCTACTCTTTATCGATGATGC
Found at i:72867960 original size:170 final size:171
Alignment explanation
Indices: 72867673--72868094 Score: 503
Period size: 170 Copynumber: 2.5 Consensus size: 171
72867663 TAAAATATTG
* * * *
72867673 GTGTGCCAGTATAGTTGCTTCAGTTTATCTA-TTGATGCATTGTGTGTTCTAGTATAGTTACTTC
1 GTGTGCCAATATAGTTGCTTCAGTTTATC-AGATGATGCATTGTGTGTGCCAGTATAGTTACTTC
* * * * * * * * *
72867737 GATATACCTGATCATGTACTGTGTGTGTCAGTATAGTTGTCTCGATTTATCTGATGATGTACTGT
65 GGTATATCTGATGATGCACTGTATATGCCAGTATAGTTGTCTCGATATATCTGATGATGTACTAT
* * * * * *
72867802 GTGTGCTAGTATAGTTTCTTC-TCTTTTCGATAATGCACTGC
130 GTATGCTAGTATAGTTACTTCGTATATCCAATAATGCACTGC
* * * *
72867843 GTGTGCCAATATAATTGCTACTGTTTATCAGATGATGCATAGTGTGTGCCAGTATAGTTACTTCG
1 GTGTGCCAATATAGTTGCTTCAGTTTATCAGATGATGCATTGTGTGTGCCAGTATAGTTACTTCG
* *
72867908 GTATAT-TCGATGATGCACTGTATATGCCAGTATAGTTGTTTC-AGTATATCTGATGATGTATTA
66 GTATATCT-GATGATGCACTGTATATGCCAGTATAGTTGTCTCGA-TATATCTGATGATGTACTA
* * *
72867971 TGTATGCTAGTATGGTTACTTCGGTATATCCAATGATGCACTGT
129 TGTATGCTAGTATAGTTACTTC-GTATATCCAATAATGCACTGC
* *
72868015 GTGTGTCAATATAGTTGCTTCGGTTTATC-GATGATGCATTGTGTGTGCCAGTATAGTTACTTCG
1 GTGTGCCAATATAGTTGCTTCAGTTTATCAGATGATGCATTGTGTGTGCCAGTATAGTTACTTCG
72868079 GTATATCTGATGATGC
66 GTATATCTGATGATGC
72868095 GTTACGAAGC
Statistics
Matches: 213, Mismatches: 33, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
169 3 0.01
170 122 0.57
171 48 0.23
172 40 0.19
ACGTcount: A:0.22, C:0.14, G:0.23, T:0.41
Consensus pattern (171 bp):
GTGTGCCAATATAGTTGCTTCAGTTTATCAGATGATGCATTGTGTGTGCCAGTATAGTTACTTCG
GTATATCTGATGATGCACTGTATATGCCAGTATAGTTGTCTCGATATATCTGATGATGTACTATG
TATGCTAGTATAGTTACTTCGTATATCCAATAATGCACTGC
Found at i:72869794 original size:34 final size:34
Alignment explanation
Indices: 72869723--72870059 Score: 311
Period size: 35 Copynumber: 9.8 Consensus size: 34
72869713 ATTATTGATA
* *
72869723 CAAATGTGGCTGTTTTTACATGTTATAATGGTGTC
1 CAAATGTGGTTG-TTTTGCATGTTATAATGGTGTC
* * * * *
72869758 CAAATGTGGTTGTTATGCGTCTTACAACGGTGTC
1 CAAATGTGGTTGTTTTGCATGTTATAATGGTGTC
* *
72869792 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTC
1 CAAATGTGGTTG-TTTTGCATGTTATAATGGTGTC
* * * ** *
72869827 CAAATGTGGTCGTTTTGCATATTACAATAATATCC
1 CAAATGTGGTTGTTTTGCATGTTATAATGGTGT-C
* *
72869862 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTC
1 CAAATGTGGTTG-TTTTGCATGTTATAATGGTGTC
72869897 CAAATGTGGTTGTTTTGCATGTTATAATGGTGTC
1 CAAATGTGGTTGTTTTGCATGTTATAATGGTGTC
* *
72869931 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTC
1 CAAATGTGGTTG-TTTTGCATGTTATAATGGTGTC
* * *
72869966 CAAATGTGATTGTTTTGTATGTT-TAATGTTGTC
1 CAAATGTGGTTGTTTTGCATGTTATAATGGTGTC
* * * ** * *
72869999 CAAAAGTGGCTGCTTTTGGTATGTTGCAATGTTGTT
1 CAAATGTGGTTG-TTTT-GCATGTTATAATGGTGTC
* *
72870035 CTAA--TGGTTGTTTCGCATGTTATAA
1 CAAATGTGGTTGTTTTGCATGTTATAA
72870060 GGATGTTCAA
Statistics
Matches: 249, Mismatches: 46, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
32 8 0.03
33 22 0.09
34 93 0.37
35 100 0.40
36 26 0.10
ACGTcount: A:0.23, C:0.11, G:0.22, T:0.44
Consensus pattern (34 bp):
CAAATGTGGTTGTTTTGCATGTTATAATGGTGTC
Found at i:72869834 original size:35 final size:35
Alignment explanation
Indices: 72869723--72870007 Score: 330
Period size: 35 Copynumber: 8.3 Consensus size: 35
72869713 ATTATTGATA
* *
72869723 CAAATGTGGCTGTTTTTACATGTTATAATGGTGTC
1 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTC
* * * * * * *
72869758 CAAATGTGGTTG-TTATGCGTCTTACAACGGTGTC
1 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTC
72869792 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTC
1 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTC
* * * * ** *
72869827 CAAATGTGGTCG-TTTTGCATATTACAATAATATCC
1 CAAATGTGGTTGTTTTTACATGTTATAATGTTGT-C
72869862 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTC
1 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTC
* *
72869897 CAAATGTGGTTG-TTTTGCATGTTATAATGGTGTC
1 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTC
72869931 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTC
1 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTC
*
72869966 CAAATGTGATTGTTTTGT--ATGTT-TAATGTTGTC
1 CAAATGTGGTTGTTTT-TACATGTTATAATGTTGTC
*
72869999 CAAAAGTGG
1 CAAATGTGG
72870008 CTGCTTTTGG
Statistics
Matches: 210, Mismatches: 35, Indels: 12
0.82 0.14 0.05
Matches are distributed among these distances:
33 17 0.08
34 80 0.38
35 97 0.46
36 16 0.08
ACGTcount: A:0.24, C:0.11, G:0.22, T:0.44
Consensus pattern (35 bp):
CAAATGTGGTTGTTTTTACATGTTATAATGTTGTC
Found at i:72869973 original size:139 final size:139
Alignment explanation
Indices: 72869723--72869982 Score: 439
Period size: 139 Copynumber: 1.9 Consensus size: 139
72869713 ATTATTGATA
*
72869723 CAAATGTGGCTGTTTTTACATGTTATAATGGTGTCCAAATGTGGTTGTTATGCGTCTTACAACGG
1 CAAATGTGGCTGTTTTTACATGTTATAATGGTGTCCAAATGTGGTTGTTATGCATCTTACAACGG
*
72869788 TGTCCAAATGTGGTTGTTTTTACATGTTATAATGTTGTCCAAATGTGGTCGTTTTGCATATTACA
66 TGTCCAAATGTGGTTGTTTTTACATGTTATAATGTTGTCCAAATGTGATCGTTTTGCATATTACA
72869853 ATAATATCC
131 ATAATATCC
* * * * * *
72869862 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTCCAAATGTGGTTGTTTTGCATGTTATAATGG
1 CAAATGTGGCTGTTTTTACATGTTATAATGGTGTCCAAATGTGGTTGTTATGCATCTTACAACGG
*
72869927 TGTCCAAATGTGGTTGTTTTTACATGTTATAATGTTGTCCAAATGTGATTGTTTTG
66 TGTCCAAATGTGGTTGTTTTTACATGTTATAATGTTGTCCAAATGTGATCGTTTTG
72869983 TATGTTTAAT
Statistics
Matches: 112, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
139 112 1.00
ACGTcount: A:0.23, C:0.11, G:0.22, T:0.44
Consensus pattern (139 bp):
CAAATGTGGCTGTTTTTACATGTTATAATGGTGTCCAAATGTGGTTGTTATGCATCTTACAACGG
TGTCCAAATGTGGTTGTTTTTACATGTTATAATGTTGTCCAAATGTGATCGTTTTGCATATTACA
ATAATATCC
Found at i:72869988 original size:69 final size:69
Alignment explanation
Indices: 72869723--72870007 Score: 401
Period size: 69 Copynumber: 4.1 Consensus size: 69
72869713 ATTATTGATA
* * * * * *
72869723 CAAATGTGGCTGTTTTTACATGTTATAATGGTGTCCAAATGTGGTTGTTATGCGTCTTACAACGG
1 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTCCAAATGTGGTTGTTTTGCATGTTACAATGG
72869788 TGTC
66 TGTC
* * **
72869792 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTCCAAATGTGGTCGTTTTGCATATTACAATAA
1 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTCCAAATGTGGTTGTTTTGCATGTTACAATGG
*
72869857 TATCC
66 TGT-C
*
72869862 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTCCAAATGTGGTTGTTTTGCATGTTATAATGG
1 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTCCAAATGTGGTTGTTTTGCATGTTACAATGG
72869927 TGTC
66 TGTC
* * * *
72869931 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTCCAAATGTGATTGTTTTGTATGTT-TAATGT
1 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTCCAAATGTGGTTGTTTTGCATGTTACAATGG
72869995 TGTC
66 TGTC
*
72869999 CAAAAGTGG
1 CAAATGTGG
72870008 CTGCTTTTGG
Statistics
Matches: 195, Mismatches: 20, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
68 17 0.09
69 115 0.59
70 63 0.32
ACGTcount: A:0.24, C:0.11, G:0.22, T:0.44
Consensus pattern (69 bp):
CAAATGTGGTTGTTTTTACATGTTATAATGTTGTCCAAATGTGGTTGTTTTGCATGTTACAATGG
TGTC
Done.