Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 255 of 444
Found at i:72870023 original size:69 final size:69
Alignment explanation
Indices: 72869723--72870059 Score: 320
Period size: 69 Copynumber: 4.9 Consensus size: 69
72869713 ATTATTGATA
* * * * * * * * *
72869723 CAAATGTGGCTGTTTTTACATGTTATAATGGTGTCCAAATGTGGTTGTTATGCGTCTTACAACGG
1 CAAAAGTGGCTGTTTTGACATGTTATAATGTTGTCCAAATGTGATTGTTTTGCATGTTATAATGG
72869788 TGTC
66 TGTC
* * * * * * * **
72869792 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTCCAAATGTGGTCGTTTTGCATATTACAATAA
1 CAAAAGTGGCTGTTTTGACATGTTATAATGTTGTCCAAATGTGATTGTTTTGCATGTTATAATGG
*
72869857 TATCC
66 TGT-C
* * * *
72869862 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTCCAAATGTGGTTGTTTTGCATGTTATAATGG
1 CAAAAGTGGCTGTTTTGACATGTTATAATGTTGTCCAAATGTGATTGTTTTGCATGTTATAATGG
72869927 TGTC
66 TGTC
* * * * *
72869931 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTCCAAATGTGATTGTTTTGTATGTT-TAATGT
1 CAAAAGTGGCTGTTTTGACATGTTATAATGTTGTCCAAATGTGATTGTTTTGCATGTTATAATGG
72869995 TGTC
66 TGTC
** ** * * *
72869999 CAAAAGTGGCTGCTTTTGGTATGTTGCAATGTTGTTCTAATG-G-TTGTTTCGCATGTTATAA
1 CAAAAGTGGCTG-TTTTGACATGTTATAATGTTGTCCAAATGTGATTGTTTTGCATGTTATAA
72870060 GGATGTTCAA
Statistics
Matches: 235, Mismatches: 30, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
67 12 0.05
68 23 0.10
69 137 0.58
70 63 0.27
ACGTcount: A:0.23, C:0.11, G:0.22, T:0.44
Consensus pattern (69 bp):
CAAAAGTGGCTGTTTTGACATGTTATAATGTTGTCCAAATGTGATTGTTTTGCATGTTATAATGG
TGTC
Found at i:72871019 original size:46 final size:46
Alignment explanation
Indices: 72870959--72871174 Score: 251
Period size: 46 Copynumber: 5.0 Consensus size: 46
72870949 TTTGACATGA
* * * * * *
72870959 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
72871005 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
72871051 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
72871097 TGCCATGGTATCTTT----CA-------AC-CATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
72871131 TGCCATGGTATCTTTTAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
72871175 AGAGCACACT
Statistics
Matches: 150, Mismatches: 7, Indels: 26
0.82 0.04 0.14
Matches are distributed among these distances:
34 30 0.20
35 2 0.01
38 2 0.01
42 2 0.01
45 6 0.04
46 108 0.72
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:72871122 original size:34 final size:34
Alignment explanation
Indices: 72871082--72871152 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
72871072 TGGTCTTACA
72871082 CATTTCATATCAGGCTGCCATGGTATCTTTCAAC
1 CATTTCATATCAGGCTGCCATGGTATCTTTCAAC
*
72871116 CATTTCATATCAGGCTGCCATGGTATCTTTTAAC
1 CATTTCATATCAGGCTGCCATGGTATCTTTCAAC
72871150 CAT
1 CAT
72871153 GGTCTTACAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (34 bp):
CATTTCATATCAGGCTGCCATGGTATCTTTCAAC
Found at i:72873299 original size:2 final size:2
Alignment explanation
Indices: 72873292--72873317 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
72873282 TTTCTTTCCT
72873292 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
72873318 AATAAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:72877441 original size:27 final size:27
Alignment explanation
Indices: 72877401--72877476 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
72877391 GGCAAAACAA
** *
72877401 TCATTTTACCCTACAGGGGTATGTCGG
1 TCATTTTATACTACAAGGGTATGTCGG
* *
72877428 TCATTTTATGCTACAAGGGTATTTCGG
1 TCATTTTATACTACAAGGGTATGTCGG
*
72877455 TAATTTTATACTACAAGGGTAT
1 TCATTTTATACTACAAGGGTAT
72877477 TTTAATAAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (27 bp):
TCATTTTATACTACAAGGGTATGTCGG
Found at i:72877477 original size:27 final size:27
Alignment explanation
Indices: 72877411--72877478 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
72877401 TCATTTTACC
* * * *
72877411 CTACAGGGGTATGTCGGTCATTTTATG
1 CTACAAGGGTATTTCGGTAATTTTATA
72877438 CTACAAGGGTATTTCGGTAATTTTATA
1 CTACAAGGGTATTTCGGTAATTTTATA
72877465 CTACAAGGGTATTT
1 CTACAAGGGTATTT
72877479 TAATAAATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.25, C:0.13, G:0.24, T:0.38
Consensus pattern (27 bp):
CTACAAGGGTATTTCGGTAATTTTATA
Found at i:72877489 original size:27 final size:27
Alignment explanation
Indices: 72877432--72877489 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
72877422 TGTCGGTCAT
* ** *
72877432 TTTATGCTACAAGGGTATTTCGGTAAT
1 TTTATACTACAAGGGTATTTCAATAAA
*
72877459 TTTATACTACAAGGGTATTTTAATAAA
1 TTTATACTACAAGGGTATTTCAATAAA
72877486 TTTA
1 TTTA
72877490 CAAATCGGGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.43
Consensus pattern (27 bp):
TTTATACTACAAGGGTATTTCAATAAA
Found at i:72877501 original size:27 final size:27
Alignment explanation
Indices: 72877486--72877838 Score: 456
Period size: 27 Copynumber: 13.1 Consensus size: 27
72877476 TTTTAATAAA
* * *
72877486 TTTACAAATCGGGGGTGTTTCGATAAT
1 TTTACAAATCGAGGGTATTTCGGTAAT
*
72877513 TTTACAAATCGAGGGTATTTCAGTAAT
1 TTTACAAATCGAGGGTATTTCGGTAAT
* *
72877540 TTTACAAGTCGAGGGTATTTCGATAAT
1 TTTACAAATCGAGGGTATTTCGGTAAT
* * *
72877567 TTAAAAAATTGAGGGTATTTCGGTAAT
1 TTTACAAATCGAGGGTATTTCGGTAAT
*
72877594 TTTACAAATCGAGGGTGTTTCGGTAAT
1 TTTACAAATCGAGGGTATTTCGGTAAT
* * *
72877621 TTTACAACTCGATGGTGTTTCGGTAAT
1 TTTACAAATCGAGGGTATTTCGGTAAT
* *
72877648 TTTACAAATCGAGGGTGTTTCAGTAAT
1 TTTACAAATCGAGGGTATTTCGGTAAT
* * *
72877675 TTCACAAATTGGGGGTATTTCGGTAAT
1 TTTACAAATCGAGGGTATTTCGGTAAT
* *
72877702 TTTACAAATCGAGGGTGTTTCAGTAAT
1 TTTACAAATCGAGGGTATTTCGGTAAT
* *
72877729 TTTACAAATCGAGGGTGTTTCAGTAAT
1 TTTACAAATCGAGGGTATTTCGGTAAT
* *
72877756 TTTATAAATCAAGGGTATTTCGGTAAT
1 TTTACAAATCGAGGGTATTTCGGTAAT
*
72877783 TTTACAAACCG-GGAGTATTTCGGTAAT
1 TTTACAAATCGAGG-GTATTTCGGTAAT
*
72877810 TTTACAAATCGGGGGTATTTCGGTAAT
1 TTTACAAATCGAGGGTATTTCGGTAAT
72877837 TT
1 TT
72877839 CTTTTTATTA
Statistics
Matches: 285, Mismatches: 39, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
26 2 0.01
27 281 0.99
28 2 0.01
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.38
Consensus pattern (27 bp):
TTTACAAATCGAGGGTATTTCGGTAAT
Found at i:72877507 original size:54 final size:54
Alignment explanation
Indices: 72877443--72877838 Score: 386
Period size: 54 Copynumber: 7.3 Consensus size: 54
72877433 TTATGCTACA
* * * * * * *
72877443 AGGGTATTTCGGTAATTTT-ATACTACAAGGGTATTTTAATAAATTTACAAATCG
1 AGGGTATTTCGATAATTTTAAAAAT-CGAGGGTATTTCAGTAATTTTACAAATCG
* * * *
72877497 GGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAGTCG
1 AGGGTATTTCGATAATTTTAAAAATCGAGGGTATTTCAGTAATTTTACAAATCG
* * *
72877551 AGGGTATTTCGATAATTTAAAAAATTGAGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTAAAAATCGAGGGTATTTCAGTAATTTTACAAATCG
* * * * * * *
72877605 AGGGTGTTTCGGTAATTTTACAACTCGATGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTAAAAATCGAGGGTATTTCAGTAATTTTACAAATCG
* * * * * *
72877659 AGGGTGTTTC-AGTAATTTCACAAATTGGGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGA-TAATTTTAAAAATCGAGGGTATTTCAGTAATTTTACAAATCG
* * * * *
72877713 AGGGTGTTTC-AGTAATTTTACAAATCGAGGGTGTTTCAGTAATTTTATAAATCA
1 AGGGTATTTCGA-TAATTTTAAAAATCGAGGGTATTTCAGTAATTTTACAAATCG
* * * *
72877767 AGGGTATTTCGGTAATTTTACAAACCG-GGAGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTAAAAATCGAGG-GTATTTCAGTAATTTTACAAATCG
* *
72877821 GGGGTATTTCGGTAATTT
1 AGGGTATTTCGATAATTT
72877839 CTTTTTATTA
Statistics
Matches: 290, Mismatches: 48, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
53 2 0.01
54 286 0.99
55 2 0.01
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (54 bp):
AGGGTATTTCGATAATTTTAAAAATCGAGGGTATTTCAGTAATTTTACAAATCG
Found at i:72877528 original size:81 final size:81
Alignment explanation
Indices: 72877443--72877838 Score: 424
Period size: 81 Copynumber: 4.9 Consensus size: 81
72877433 TTATGCTACA
* * * *
72877443 AGGGTATTTCGGTAATTTTA-TACTACAAGGGTATTTTAATAAATTTACAAATCGGGGGTGTTTC
1 AGGGTATTTCGGTAATTTTACAACT-CGAGGGTATTTCAATAAATTTACAAATCGAGGGTGTTTC
72877507 -GATAATTTTACAAATCG
65 AG-TAATTTTACAAATCG
* * * * * *
72877524 AGGGTATTTCAGTAATTTTACAAGTCGAGGGTATTTCGAT-AATTTAAAAAATTGAGGGTATTTC
1 AGGGTATTTCGGTAATTTTACAACTCGAGGGTATTTCAATAAATTT-ACAAATCGAGGGTGTTTC
*
72877588 GGTAATTTTACAAATCG
65 AGTAATTTTACAAATCG
* * * ** *
72877605 AGGGTGTTTCGGTAATTTTACAACTCGATGGTGTTTCGGTAATTTTACAAATCGAGGGTGTTTCA
1 AGGGTATTTCGGTAATTTTACAACTCGAGGGTATTTCAATAAATTTACAAATCGAGGGTGTTTCA
* *
72877670 GTAATTTCACAAATTG
66 GTAATTTTACAAATCG
* * * * *
72877686 GGGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCAGTAATTTTACAAATCGAGGGTGTTTCA
1 AGGGTATTTCGGTAATTTTACAACTCGAGGGTATTTCAATAAATTTACAAATCGAGGGTGTTTCA
* *
72877751 GTAATTTTATAAATCA
66 GTAATTTTACAAATCG
** * * *
72877767 AGGGTATTTCGGTAATTTTACAAAC-CG-GGAGTATTTCGGTAATTTTACAAATCGGGGGTATTT
1 AGGGTATTTCGGTAATTTTAC-AACTCGAGG-GTATTTCAATAAATTTACAAATCGAGGGTGTTT
*
72877830 CGGTAATTT
64 CAGTAATTT
72877839 CTTTTTATTA
Statistics
Matches: 270, Mismatches: 39, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
80 7 0.03
81 254 0.94
82 9 0.03
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (81 bp):
AGGGTATTTCGGTAATTTTACAACTCGAGGGTATTTCAATAAATTTACAAATCGAGGGTGTTTCA
GTAATTTTACAAATCG
Found at i:72883726 original size:40 final size:39
Alignment explanation
Indices: 72883671--72883874 Score: 291
Period size: 40 Copynumber: 5.1 Consensus size: 39
72883661 TGAATGATAC
72883671 CCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTATGCTAGTG-TTATAT
72883711 CCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTATGCTAGTG-TTATAT
*
72883751 CCGGGTTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTATGCTAG-TGTTATAT
* * * *
72883791 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTATGCTAG-TGTTATAT
* * *
72883831 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTATGCTAGT-GTTATAT
72883871 CCGG
1 CCGG
72883875 CTAAATTCCG
Statistics
Matches: 153, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
39 1 0.01
40 150 0.98
41 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (39 bp):
CCGGGTTAAGACCCGAAGGCATTTATGCTAGTGTTATAT
Found at i:72885415 original size:28 final size:27
Alignment explanation
Indices: 72885374--72885463 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 27
72885364 AGGAAGCGTC
*
72885374 CTGGTGGCTA-TGCCACAAATTATCTATT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
72885402 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
72885429 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
72885458 CTGGTG
1 CTGGTG
72885464 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 22 0.42
28 23 0.44
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:72885432 original size:27 final size:28
Alignment explanation
Indices: 72885374--72885463 Score: 103
Period size: 27 Copynumber: 3.2 Consensus size: 28
72885364 AGGAAGCGTC
* *
72885374 CTGGTGGCTA-TGCCACAAATTATCTATT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
72885402 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
72885429 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
72885458 CTGGTG
1 CTGGTG
72885464 ACTCTGTCAC
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 22 0.43
28 22 0.43
29 7 0.14
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:72885474 original size:29 final size:28
Alignment explanation
Indices: 72885384--72885474 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
72885374 CTGGTGGCTA
* * * *
72885384 TGCCACAAATTATCTATTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
72885412 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
72885439 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
72885468 TGTCACA
1 TGCCACA
72885475 TTTTCTGTAT
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
27 22 0.43
28 14 0.27
29 15 0.29
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:72885482 original size:55 final size:56
Alignment explanation
Indices: 72885374--72885488 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
72885364 AGGAAGCGTC
* * *
72885374 CTGGTGGCTATGCCACAAATTATCTATTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTAT
* * * *
72885429 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTAT-TCTGGTGACCCTGCCACATATATCTGTAT
72885485 CTGG
1 CTGG
72885489 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.58
56 20 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:72885947 original size:19 final size:19
Alignment explanation
Indices: 72885923--72885959 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
72885913 CGCTTAATAT
*
72885923 TTTTATGGTTTTATTTTAC
1 TTTTATGATTTTATTTTAC
*
72885942 TTTTATTATTTTATTTTA
1 TTTTATGATTTTATTTTA
72885960 TTATGATGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.19, C:0.03, G:0.05, T:0.73
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:72885958 original size:13 final size:14
Alignment explanation
Indices: 72885933--72885963 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
72885923 TTTTATGGTT
72885933 TTATTTTACTTTTA
1 TTATTTTACTTTTA
72885947 TTATTTTA-TTTTA
1 TTATTTTACTTTTA
72885960 TTAT
1 TTAT
72885964 GATGAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (14 bp):
TTATTTTACTTTTA
Found at i:72893074 original size:28 final size:28
Alignment explanation
Indices: 72893034--72893098 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
72893024 ATGTACTAGA
*
72893034 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
72893062 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
72893090 ATACCCCTA
1 ATACCCCTA
72893099 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:72893245 original size:27 final size:26
Alignment explanation
Indices: 72893214--72893289 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 26
72893204 CTGGTGGCTA
*
72893214 TGCCACAAATTATCTGTTCTGTGGCCC
1 TGCCACAAA-TATCTGTTCTGTGGCAC
**
72893241 TGCCACGTATATCTGTTCTGGTGGCAC
1 TGCCACAAATATCTGTTCT-GTGGCAC
72893268 TGCCACAAAATATCTGTATCTG
1 TGCCAC-AAATATCTGT-TCTG
72893290 GTGACTCTGT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
26 10 0.24
27 19 0.46
28 9 0.22
29 3 0.07
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (26 bp):
TGCCACAAATATCTGTTCTGTGGCAC
Found at i:72893303 original size:29 final size:28
Alignment explanation
Indices: 72893214--72893303 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
72893204 CTGGTGGCTA
* * *
72893214 TGCCACAAATTATCTGTTCT-GTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
72893241 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
72893268 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
72893297 TGTCACA
1 TGCCACA
72893304 TTTTCTGTAT
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
26 10 0.20
27 18 0.35
28 8 0.16
29 15 0.29
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:72895097 original size:17 final size:19
Alignment explanation
Indices: 72895075--72895118 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
72895065 ACAATAATAT
72895075 AAAATA-AT-GATATGTAC
1 AAAATATATAGATATGTAC
*
72895092 AAAATATATATATATGTAC
1 AAAATATATAGATATGTAC
*
72895111 ATAATATA
1 AAAATATA
72895119 GTTATAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 6 0.26
18 2 0.09
19 15 0.65
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.34
Consensus pattern (19 bp):
AAAATATATAGATATGTAC
Found at i:72895933 original size:14 final size:14
Alignment explanation
Indices: 72895890--72895942 Score: 63
Period size: 14 Copynumber: 3.6 Consensus size: 14
72895880 TGAATGTTCC
*
72895890 TTTTTTG-TTATTT
1 TTTTTTGCTGATTT
72895903 TTTTTTGCTGGAAATTT
1 TTTTTTGCT-G--ATTT
72895920 TTTTTTGCTGATTT
1 TTTTTTGCTGATTT
72895934 TTTTTTGCT
1 TTTTTTGCT
72895943 CTTTTTTCTC
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
13 7 0.20
14 14 0.40
16 1 0.03
17 13 0.37
ACGTcount: A:0.09, C:0.06, G:0.13, T:0.72
Consensus pattern (14 bp):
TTTTTTGCTGATTT
Found at i:72895948 original size:14 final size:14
Alignment explanation
Indices: 72895916--72895949 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
72895906 TTTGCTGGAA
*
72895916 ATTTTTTTTTGCTG
1 ATTTTTTTTTGCTC
72895930 ATTTTTTTTTGCTC
1 ATTTTTTTTTGCTC
72895944 -TTTTTT
1 ATTTTTT
72895950 CTCAAATGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.06, C:0.09, G:0.09, T:0.76
Consensus pattern (14 bp):
ATTTTTTTTTGCTC
Found at i:72896224 original size:30 final size:30
Alignment explanation
Indices: 72896167--72896282 Score: 119
Period size: 30 Copynumber: 3.9 Consensus size: 30
72896157 GTAATTTTTA
* * *
72896167 GAAAATTTA-GGGTTAAAATGCAATTTAAG
1 GAAAGTTTAGGGGTCAAAATGAAATTTAAG
* * * *
72896196 GAAATTTTAGGGGTCTAAGTGAAATTTAAA
1 GAAAGTTTAGGGGTCAAAATGAAATTTAAG
*
72896226 GAAAGTTTAAGGGTCAAAATGAAATTT-AG
1 GAAAGTTTAGGGGTCAAAATGAAATTTAAG
* *
72896255 GAAAAGTTTAGGGGTAAAAATGTAATTT
1 G-AAAGTTTAGGGGTCAAAATGAAATTT
72896283 TTATTTTTTG
Statistics
Matches: 71, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
29 10 0.14
30 61 0.86
ACGTcount: A:0.43, C:0.03, G:0.23, T:0.31
Consensus pattern (30 bp):
GAAAGTTTAGGGGTCAAAATGAAATTTAAG
Found at i:72896282 original size:60 final size:59
Alignment explanation
Indices: 72896153--72896282 Score: 145
Period size: 60 Copynumber: 2.2 Consensus size: 59
72896143 TTCTGGGGCT
** * * * **
72896153 AAATGTAATTTTTAGAAAATTTAGGGTTAAAATGCAATTTAAGGAAATTTTAGGGGTCT
1 AAATGTAATTTAAAGAAAATTTAGGGTCAAAATGAAATTTAAGGAAAGTTTAGGGGTAA
* * *
72896212 AAGTGAAATTTAAAGAAAGTTTAAGGGTCAAAATGAAATTT-AGGAAAAGTTTAGGGGTAA
1 AAATGTAATTTAAAGAAAATTT-AGGGTCAAAATGAAATTTAAGG-AAAGTTTAGGGGTAA
72896272 AAATGTAATTT
1 AAATGTAATTT
72896283 TTATTTTTTG
Statistics
Matches: 57, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
59 20 0.35
60 37 0.65
ACGTcount: A:0.43, C:0.02, G:0.22, T:0.33
Consensus pattern (59 bp):
AAATGTAATTTAAAGAAAATTTAGGGTCAAAATGAAATTTAAGGAAAGTTTAGGGGTAA
Found at i:72896310 original size:24 final size:24
Alignment explanation
Indices: 72896279--72896324 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
72896269 TAAAAATGTA
72896279 ATTTTTATTTTTTGAAAATTTTTT
1 ATTTTTATTTTTTGAAAATTTTTT
*
72896303 ATTTTTATTTTTTTAAAATTTT
1 ATTTTTATTTTTTGAAAATTTT
72896325 GAAAATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (24 bp):
ATTTTTATTTTTTGAAAATTTTTT
Found at i:72896598 original size:10 final size:9
Alignment explanation
Indices: 72896560--72896715 Score: 86
Period size: 10 Copynumber: 16.7 Consensus size: 9
72896550 GACATATTGA
72896560 AAAAATTAT
1 AAAAATTAT
72896569 -AAAA--AT
1 AAAAATTAT
*
72896575 AAAAATCAAT
1 AAAAAT-TAT
*
72896585 AAAAGTTAT
1 AAAAATTAT
72896594 AAAAATTATT
1 AAAAATTA-T
**
72896604 AAATTTTAAT
1 AAAAATT-AT
*
72896614 AAAAATATTT
1 AAAAAT-TAT
*
72896624 AAAATTTAT
1 AAAAATTAT
* *
72896633 TAAAATTAGA
1 AAAAATTA-T
72896643 AAAAATT-T
1 AAAAATTAT
*
72896651 ATAAAATCAT
1 A-AAAATTAT
*
72896661 AAAAAATAT
1 AAAAATTAT
*
72896670 AAAAAATTGT
1 -AAAAATTAT
72896680 AAAATATTAT
1 AAAA-ATTAT
*
72896690 AAAAATCAT
1 AAAAATTAT
72896699 AAACAAATTAT
1 -AA-AAATTAT
72896710 AAAAAT
1 AAAAAT
72896716 GCATAAAAAA
Statistics
Matches: 110, Mismatches: 23, Indels: 28
0.68 0.14 0.17
Matches are distributed among these distances:
6 2 0.02
7 4 0.04
8 5 0.05
9 40 0.36
10 51 0.46
11 8 0.07
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (9 bp):
AAAAATTAT
Found at i:72896708 original size:20 final size:19
Alignment explanation
Indices: 72896573--72896725 Score: 98
Period size: 19 Copynumber: 7.9 Consensus size: 19
72896563 AATTATAAAA
*
72896573 ATAAAAATCA-ATAAAAGTT
1 ATAAAAATCATA-AAAAATT
* * **
72896592 ATAAAAATTATTAAATTTT
1 ATAAAAATCATAAAAAATT
* *
72896611 AATAAAAAT-ATTTAAAATTT
1 -ATAAAAATCA-TAAAAAATT
* * *
72896631 ATTAAAATTAGAAAAAATT
1 ATAAAAATCATAAAAAATT
72896650 -TATAAAATCATAAAAAA-T
1 ATA-AAAATCATAAAAAATT
** *
72896668 ATAAAAAATTGTAAAATATT
1 AT-AAAAATCATAAAAAATT
72896688 ATAAAAATCATAAACAAATT
1 ATAAAAATCATAAA-AAATT
72896708 ATAAAAATGCATAAAAAA
1 ATAAAAAT-CATAAAAAA
72896726 AGGTCCTTTA
Statistics
Matches: 106, Mismatches: 18, Indels: 19
0.74 0.13 0.13
Matches are distributed among these distances:
18 2 0.02
19 62 0.58
20 36 0.34
21 6 0.06
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (19 bp):
ATAAAAATCATAAAAAATT
Found at i:72896724 original size:11 final size:10
Alignment explanation
Indices: 72896653--72896725 Score: 62
Period size: 9 Copynumber: 7.4 Consensus size: 10
72896643 AAAAATTTAT
72896653 AAAATCATAA
1 AAAATCATAA
72896663 AAAAT-ATAA
1 AAAATCATAA
**
72896672 AAAATTGTAA
1 AAAATCATAA
* *
72896682 AATATTAT-A
1 AAAATCATAA
72896691 AAAATCATAA
1 AAAATCATAA
*
72896701 ACAAATTAT-A
1 A-AAATCATAA
72896711 AAAATGCATAA
1 AAAAT-CATAA
72896722 AAAA
1 AAAA
72896726 AGGTCCTTTA
Statistics
Matches: 51, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
9 20 0.39
10 20 0.39
11 11 0.22
ACGTcount: A:0.67, C:0.05, G:0.03, T:0.25
Consensus pattern (10 bp):
AAAATCATAA
Found at i:72896912 original size:10 final size:10
Alignment explanation
Indices: 72896897--72897027 Score: 62
Period size: 10 Copynumber: 13.6 Consensus size: 10
72896887 TAGTATGATA
72896897 ATTTTTATAT
1 ATTTTTATAT
*
72896907 ATTTTTTTAT
1 ATTTTTATAT
*
72896917 AAATTTTATAT
1 -ATTTTTATAT
*
72896928 -TTCTTTACAT
1 ATT-TTTATAT
*
72896938 TTTTTTATA-
1 ATTTTTATAT
*
72896947 ATTTTCT-TAC
1 ATTTT-TATAT
* *
72896957 AATTTTATAA
1 ATTTTTATAT
*
72896967 ATTTTTTTAT
1 ATTTTTATAT
*
72896977 -TTTTTCTAT
1 ATTTTTATAT
**
72896986 ATTACTATAT
1 ATTTTTATAT
72896996 A-TTTTATAT
1 ATTTTTATAT
**
72897005 -TTTTTA-CG
1 ATTTTTATAT
72897013 ATTTTTATA-
1 ATTTTTATAT
72897022 ATTTTT
1 ATTTTT
72897028 CCCCTTTTTT
Statistics
Matches: 90, Mismatches: 21, Indels: 21
0.68 0.16 0.16
Matches are distributed among these distances:
9 39 0.43
10 41 0.46
11 10 0.11
ACGTcount: A:0.27, C:0.05, G:0.01, T:0.66
Consensus pattern (10 bp):
ATTTTTATAT
Found at i:72896918 original size:21 final size:21
Alignment explanation
Indices: 72896894--72896988 Score: 67
Period size: 19 Copynumber: 4.8 Consensus size: 21
72896884 TTTTAGTATG
72896894 ATAATTTTTATATATTTTTTT
1 ATAATTTTTATATATTTTTTT
* *
72896915 ATAA-ATTT-TATATTTCTTT
1 ATAATTTTTATATATTTTTTT
* * *
72896934 A-CATTTTTTTATAATTTTCTT
1 ATAATTTTTATAT-ATTTTTTT
* *
72896955 ACAA-TTTTATAAATTTTTTT
1 ATAATTTTTATATATTTTTTT
*
72896975 AT--TTTTTCTATATT
1 ATAATTTTTATATATT
72896989 ACTATATATT
Statistics
Matches: 56, Mismatches: 13, Indels: 12
0.69 0.16 0.15
Matches are distributed among these distances:
18 1 0.02
19 23 0.41
20 14 0.25
21 17 0.30
22 1 0.02
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.66
Consensus pattern (21 bp):
ATAATTTTTATATATTTTTTT
Found at i:72897425 original size:94 final size:92
Alignment explanation
Indices: 72897207--72897522 Score: 328
Period size: 92 Copynumber: 3.4 Consensus size: 92
72897197 TCAAAGGGCC
* * * ** *
72897207 TTTTTTTACACATTTTGATAGTTCAAA-TATTCAATTGAGTGCAAAAAAAAAA-A-TAGAGGCTT
1 TTTTTTTATACATTATGAAAGTT-AAAGTACCCAATTGAGTGAAAAAAAAAAAGAGTAGAGGCTT
*
72897269 AATTGCTTTGTTTGAAAAAGTTTGAA--G
65 AATTGCTTTTTTTGAAAAAGTTT-AAGGG
*
72897296 TTTTTTTATACATTATGAAA-TCTAAAGTACCCAATTGAGTGTAAAAAAAAAAAGAGTAGGGGCT
1 TTTTTTTATACATTATGAAAGT-TAAAGTACCCAATTGAGTG-AAAAAAAAAAAGAGTAGAGGCT
72897360 TAATTGCTTTTTTTGAAAAAGTTTAAGGG
64 TAATTGCTTTTTTTGAAAAAGTTTAAGGG
* *
72897389 TTTTTTTGATACATTATGAAAGTTAAAGTACTCAATTGAGTG-AAAAAAAATAGAGGCTTA-ATG
1 TTTTTTT-ATACATTATGAAAGTTAAAGTACCCAATTGAGTGAAAAAAAAAAAGA-G--TAGA-G
* ** *
72897452 G-TT-TTTTTTTTTTTTGAAAAAGTTTGAGGG
61 GCTTAATTGCTTTTTTTGAAAAAGTTTAAGGG
72897482 ATTTTTTTTTATACATTATGAAAGTTAAAGTACCCAATTGA
1 ---TTTTTTTATACATTATGAAAGTTAAAGTACCCAATTGA
72897523 ATATAAAAAA
Statistics
Matches: 195, Mismatches: 16, Indels: 26
0.82 0.07 0.11
Matches are distributed among these distances:
88 4 0.02
89 30 0.15
90 10 0.05
91 3 0.02
92 41 0.21
93 32 0.16
94 33 0.17
95 35 0.18
96 7 0.04
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.39
Consensus pattern (92 bp):
TTTTTTTATACATTATGAAAGTTAAAGTACCCAATTGAGTGAAAAAAAAAAAGAGTAGAGGCTTA
ATTGCTTTTTTTGAAAAAGTTTAAGGG
Found at i:72897509 original size:95 final size:94
Alignment explanation
Indices: 72897207--72897534 Score: 329
Period size: 89 Copynumber: 3.5 Consensus size: 94
72897197 TCAAAGGGCC
* * * ** * *
72897207 TTTTTTTACACATTTTGATAGTTCAAA-TATTCAATTGAGTGCAAAAAAAAAAATAG--A-GGCT
1 TTTTTTTATACATTATGAAAGTT-AAAGTACCCAATTGAGTGTAAAAAAAAAAAGAGTAAGGGCT
*
72897268 TAATTGCTTTGTTTGAAAAAGTTTGAA--G-
65 TAATTGCTTTTTTTGAAAAAGTTT-AAGGGT
*
72897296 TTTTTTTATACATTATGAAA-TCTAAAGTACCCAATTGAGTGTAAAAAAAAAAAGAGTAGGGGCT
1 TTTTTTTATACATTATGAAAGT-TAAAGTACCCAATTGAGTGTAAAAAAAAAAAGAGTAAGGGCT
72897360 TAATTGCTTTTTTTGAAAAAGTTTAAGGGT
65 TAATTGCTTTTTTTGAAAAAGTTTAAGGGT
* * * *
72897390 TTTTTTGATACATTATGAAAGTTAAAGTACTCAATTGAGTG--AAAAAAAATAGAGGCTTAATGG
1 TTTTTTTATACATTATGAAAGTTAAAGTACCCAATTGAGTGTAAAAAAAAAAAGA-G--TAAGGG
* ** *
72897453 -TT-TTTTTTTTTTTTGAAAAAGTTTGAGGGATT
63 CTTAATTGCTTTTTTTGAAAAAGTTTAAGGG--T
* *
72897485 TTTTTTTATACATTATGAAAGTTAAAGTACCCAATTGAATATAAAAAAAA
1 TTTTTTTATACATTATGAAAGTTAAAGTACCCAATTGAGTGTAAAAAAAA
72897535 GATATTTTTA
Statistics
Matches: 201, Mismatches: 22, Indels: 24
0.81 0.09 0.10
Matches are distributed among these distances:
88 4 0.02
89 43 0.21
91 2 0.01
92 38 0.19
93 25 0.12
94 39 0.19
95 43 0.21
97 7 0.03
ACGTcount: A:0.39, C:0.07, G:0.16, T:0.38
Consensus pattern (94 bp):
TTTTTTTATACATTATGAAAGTTAAAGTACCCAATTGAGTGTAAAAAAAAAAAGAGTAAGGGCTT
AATTGCTTTTTTTGAAAAAGTTTAAGGGT
Found at i:72900252 original size:29 final size:29
Alignment explanation
Indices: 72900210--72900311 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
72900200 TCATGAATTG
72900210 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
72900239 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
* * *
72900268 GCACTAAGTGTGCGAGTTCGACTAT-TA-A
1 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
72900296 GCACTAAGTGTGCGGG
1 GCACTAAGTGTGCGGG
72900312 CTTATTATAC
Statistics
Matches: 68, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
28 16 0.24
29 51 0.75
30 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.28
Consensus pattern (29 bp):
GCACTAAGTGTGCGGGTTCAAATTGTATA
Found at i:72903813 original size:23 final size:23
Alignment explanation
Indices: 72903787--72903835 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
72903777 TTGGATTTGT
72903787 TTCCAACTTAATTTGTTTAAACA
1 TTCCAACTTAATTTGTTTAAACA
*
72903810 TTCCAACTTGATTTGTTTAAACA
1 TTCCAACTTAATTTGTTTAAACA
72903833 TTC
1 TTC
72903836 TTTTAAGTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.06, T:0.45
Consensus pattern (23 bp):
TTCCAACTTAATTTGTTTAAACA
Found at i:72905614 original size:13 final size:13
Alignment explanation
Indices: 72905596--72905622 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
72905586 TGGTTAAGTG
72905596 TTAGTGTAACGTT
1 TTAGTGTAACGTT
72905609 TTAGTGTAACGTT
1 TTAGTGTAACGTT
72905622 T
1 T
72905623 CTTGAAACCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.22, T:0.48
Consensus pattern (13 bp):
TTAGTGTAACGTT
Found at i:72917722 original size:40 final size:39
Alignment explanation
Indices: 72917678--72917859 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
72917668 GTTCAAAACA
* * ** * *
72917678 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
72917718 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
72917758 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
72917797 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
72917836 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
72917860 CTCGAACATT
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:72917789 original size:39 final size:39
Alignment explanation
Indices: 72917708--72917860 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
72917698 TATGGTAACC
* *
72917708 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
72917748 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
72917787 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
72917826 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
72917861 TCGAACATTC
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:72921394 original size:40 final size:39
Alignment explanation
Indices: 72921350--72921531 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
72921340 GTTCAAAACA
* * ** * *
72921350 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
72921390 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
72921430 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
72921469 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
72921508 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
72921532 CTCGAACATT
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:72921461 original size:39 final size:39
Alignment explanation
Indices: 72921380--72921532 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
72921370 TATGGTAACC
* *
72921380 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
72921420 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
72921459 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
72921498 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
72921533 TCGAACATTC
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:72929471 original size:40 final size:39
Alignment explanation
Indices: 72929427--72929608 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
72929417 GTTCAAAACA
* * ** * *
72929427 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
72929467 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
72929507 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
72929546 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
72929585 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
72929609 CTCGAACATT
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:72929538 original size:39 final size:39
Alignment explanation
Indices: 72929457--72929609 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
72929447 TATGGTAACC
* *
72929457 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
72929497 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
72929536 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
72929575 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
72929610 TCGAACATTC
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:72942955 original size:11 final size:11
Alignment explanation
Indices: 72942939--72942964 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
72942929 GACCACACTC
72942939 ACACACAATTG
1 ACACACAATTG
72942950 ACACACAATTG
1 ACACACAATTG
72942961 ACAC
1 ACAC
72942965 TGATTCAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.31, G:0.08, T:0.15
Consensus pattern (11 bp):
ACACACAATTG
Found at i:72944648 original size:29 final size:29
Alignment explanation
Indices: 72944609--72944687 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
72944599 CTTAATAATC
*
72944609 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
72944639 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
72944668 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
72944688 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:72945352 original size:2 final size:2
Alignment explanation
Indices: 72945328--72945367 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
72945318 TGATGGCCGA
* * *
72945328 AT AT GT AT AT CT AT AT AT CT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72945368 CAACTATACT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72947849 original size:21 final size:21
Alignment explanation
Indices: 72947825--72947865 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
72947815 TCATCAGATC
*
72947825 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
72947846 TACAGGTTGAGGAATCGGGG
1 TACACCTTGAGGAATCGGGG
72947866 AGGTGGGGGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.17, G:0.41, T:0.20
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:72950895 original size:25 final size:25
Alignment explanation
Indices: 72950861--72950910 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
72950851 GATATTAGTG
72950861 TAAGGATGGGTGGGTGTTTTTAAAC
1 TAAGGATGGGTGGGTGTTTTTAAAC
72950886 TAAGGATGGGTGGGTGTTTTTAAAC
1 TAAGGATGGGTGGGTGTTTTTAAAC
72950911 CCACATAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.04, G:0.36, T:0.36
Consensus pattern (25 bp):
TAAGGATGGGTGGGTGTTTTTAAAC
Found at i:72958615 original size:66 final size:65
Alignment explanation
Indices: 72958429--72958684 Score: 215
Period size: 66 Copynumber: 3.9 Consensus size: 65
72958419 ATATAGTTTG
* *
72958429 GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGTGACCTAGC-CA-ATTTATCTCGTA
1 GCTCTCTTGTACACATGGTGTACACTCAGTACCACCCATGTGACCTAGCTCACATATATCTCGTA
* * * * * * *
72958492 GCTCTCTTGT-CTACATGTGTCCTTCAC-CTGGAACCACGCATGCGACCTAGCT-ACATATATCC
1 GCTCTCTTGTAC-ACATG-GT-GTACACTC-AGTACCACCCATGTGACCTAGCTCACATATATCT
72958554 CGTA
62 CGTA
* *
72958558 GCTCTCTTGT-CTACATGGTGTACACAT-AGTATCA-CCATGTGACCTAGCTACATCATATGTCT
1 GCTCTCTTGTAC-ACATGGTGTACAC-TCAGTACCACCCATGTGACCTAGCT-CA-CATATATCT
*
72958620 TGTA
62 CGTA
* * * **
72958624 GCTCTCTTGTACACATGATGTGCACTCAGCACCATACATGTGACCTAGCT-ACATACTATCT
1 GCTCTCTTGTACACATGGTGTACACTCAGTACCACCCATGTGACCTAGCTCACATA-TATCT
72958685 GTATCATCCA
Statistics
Matches: 153, Mismatches: 25, Indels: 28
0.74 0.12 0.14
Matches are distributed among these distances:
62 1 0.01
63 28 0.18
64 15 0.10
65 31 0.20
66 63 0.41
67 15 0.10
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.30
Consensus pattern (65 bp):
GCTCTCTTGTACACATGGTGTACACTCAGTACCACCCATGTGACCTAGCTCACATATATCTCGTA
Found at i:72959153 original size:34 final size:34
Alignment explanation
Indices: 72959114--72959183 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
72959104 CTTACATACT
72959114 TTCAACACCTTGGAAATCATAATGAATATATCAA
1 TTCAACACCTTGGAAATCATAATGAATATATCAA
72959148 TTCAACACCTTGGAAATCATAATGAATATATCAA
1 TTCAACACCTTGGAAATCATAATGAATATATCAA
72959182 TT
1 TT
72959184 TTACATTGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.31
Consensus pattern (34 bp):
TTCAACACCTTGGAAATCATAATGAATATATCAA
Found at i:72959409 original size:30 final size:30
Alignment explanation
Indices: 72959375--72959435 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
72959365 TCCTTAACTC
72959375 AAACTTTAGAAAAATTACAATTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
* * * * *
72959405 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
72959435 A
1 A
72959436 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTAGAAAAATTACAATTTTGCCCCT
Found at i:72960482 original size:15 final size:15
Alignment explanation
Indices: 72960462--72960492 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
72960452 CAAATAGGGA
72960462 TTTTATTTGTTATTT
1 TTTTATTTGTTATTT
*
72960477 TTTTATTTTTTATTT
1 TTTTATTTGTTATTT
72960492 T
1 T
72960493 CTTTCCCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.84
Consensus pattern (15 bp):
TTTTATTTGTTATTT
Found at i:72963182 original size:13 final size:13
Alignment explanation
Indices: 72963166--72963191 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72963156 TGGGGGTAGG
72963166 ATTCTGTATATCT
1 ATTCTGTATATCT
72963179 ATTCTGTATATCT
1 ATTCTGTATATCT
72963192 GAATCTGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.08, T:0.54
Consensus pattern (13 bp):
ATTCTGTATATCT
Found at i:72966348 original size:40 final size:39
Alignment explanation
Indices: 72966180--72966350 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
72966170 AGAAATTGAA
* *
72966180 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
72966220 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
72966260 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
72966300 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
72966340 TGATATCCGGG
1 TGATATCCGGG
72966351 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:72971882 original size:13 final size:13
Alignment explanation
Indices: 72971860--72971911 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
72971850 TGTTTGACAA
*
72971860 ATTTCTTAAAAAT
1 ATTTCATAAAAAT
*
72971873 ATTTCATAAAAGTT
1 ATTTCATAAAA-AT
* *
72971887 GTTTTCTTAAAAAT
1 -ATTTCATAAAAAT
72971901 ATTTCATAAAA
1 ATTTCATAAAA
72971912 GTTGTTTTCA
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
13 19 0.63
14 2 0.07
15 9 0.30
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.44
Consensus pattern (13 bp):
ATTTCATAAAAAT
Found at i:72971893 original size:28 final size:28
Alignment explanation
Indices: 72971861--72971920 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
72971851 GTTTGACAAA
72971861 TTTCTTAAAAATATTTCATAAAAGTTGT
1 TTTCTTAAAAATATTTCATAAAAGTTGT
72971889 TTTCTTAAAAATATTTCATAAAAGTTGT
1 TTTCTTAAAAATATTTCATAAAAGTTGT
72971917 TTTC
1 TTTC
72971921 AAGGAAACAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.37, C:0.08, G:0.07, T:0.48
Consensus pattern (28 bp):
TTTCTTAAAAATATTTCATAAAAGTTGT
Found at i:72971897 original size:15 final size:15
Alignment explanation
Indices: 72971874--72971921 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
72971864 CTTAAAAATA
72971874 TTTCATAAAAGTTGT
1 TTTCATAAAAGTTGT
* * *
72971889 TTTCTTAAAA-AT-A
1 TTTCATAAAAGTTGT
72971902 TTTCATAAAAGTTGT
1 TTTCATAAAAGTTGT
72971917 TTTCA
1 TTTCA
72971922 AGGAAACAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
13 9 0.36
14 2 0.08
15 14 0.56
ACGTcount: A:0.35, C:0.08, G:0.08, T:0.48
Consensus pattern (15 bp):
TTTCATAAAAGTTGT
Found at i:72972358 original size:15 final size:14
Alignment explanation
Indices: 72972328--72972361 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
72972318 ACGTAAATAA
72972328 TATTA-TTTAAAAT
1 TATTATTTTAAAAT
72972341 TATTATTTTAAAATT
1 TATTATTTTAAAA-T
72972356 TATTAT
1 TATTAT
72972362 CAAAATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.26
14 7 0.37
15 7 0.37
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TATTATTTTAAAAT
Found at i:72972468 original size:32 final size:33
Alignment explanation
Indices: 72972375--72972491 Score: 114
Period size: 32 Copynumber: 3.4 Consensus size: 33
72972365 AATAAAATTG
*
72972375 AAAT-ATTAAATAATTTATTAAAAT-AATAAATTAT
1 AAATAATT-AATAATTTATT-ATATGAATAAA-TAT
*
72972409 ATTAATTATATTAATAGTTTATTATATGAATAAATAT
1 A--AA-TA-ATTAATAATTTATTATATGAATAAATAT
*
72972446 AAATAATTAATAATTT-TTATATGATTAAATAT
1 AAATAATTAATAATTTATTATATGAATAAATAT
*
72972478 AAATATTTAATAAT
1 AAATAATTAATAAT
72972492 ATAAATTAAA
Statistics
Matches: 72, Mismatches: 5, Indels: 14
0.79 0.05 0.15
Matches are distributed among these distances:
32 28 0.39
33 10 0.14
34 3 0.04
35 2 0.03
36 2 0.03
37 8 0.11
38 16 0.22
39 3 0.04
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (33 bp):
AAATAATTAATAATTTATTATATGAATAAATAT
Found at i:72981889 original size:38 final size:39
Alignment explanation
Indices: 72981828--72981955 Score: 123
Period size: 40 Copynumber: 3.3 Consensus size: 39
72981818 ATTTGATGTG
*
72981828 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGG-TTAAAGTCCCGCAGGCTTCGTGCTGGTATTA
* * *
72981868 TATCCGGGTTAAA-TCCCGCAGGCCTAGTGCTAGTATTA
1 TATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTATTA
**** * *
72981906 TATCTAACTTTAAAGTCCCGTAGGCTTCGTGCTGGTGTTA
1 TATC-CGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTATTA
* *
72981946 TGTTCGGGTT
1 TATCCGGGTT
72981956 TTATACCTCG
Statistics
Matches: 67, Mismatches: 19, Indels: 5
0.74 0.21 0.05
Matches are distributed among these distances:
38 25 0.37
39 12 0.18
40 30 0.45
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.33
Consensus pattern (39 bp):
TATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTATTA
Found at i:72981938 original size:40 final size:39
Alignment explanation
Indices: 72981837--72981938 Score: 107
Period size: 38 Copynumber: 2.6 Consensus size: 39
72981827 GTATCCGGGC
* * ***
72981837 TTAAAGACCCGCAGGCTTCGTGCTGGTATTATATCCGGG
1 TTAAAGTCCCGCAGGCTTCGTGCTAGTATTATATCAACG
* * *
72981876 TTAAA-TCCCGCAGGCCTAGTGCTAGTATTATATCTAACT
1 TTAAAGTCCCGCAGGCTTCGTGCTAGTATTATATC-AACG
*
72981915 TTAAAGTCCCGTAGGCTTCGTGCT
1 TTAAAGTCCCGCAGGCTTCGTGCT
72981939 GGTGTTATGT
Statistics
Matches: 50, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
38 25 0.50
39 10 0.20
40 15 0.30
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.31
Consensus pattern (39 bp):
TTAAAGTCCCGCAGGCTTCGTGCTAGTATTATATCAACG
Found at i:72983196 original size:28 final size:27
Alignment explanation
Indices: 72983096--72983196 Score: 78
Period size: 28 Copynumber: 3.4 Consensus size: 27
72983086 CAGAGTTAAC
* * *
72983096 TGGGCCTTAGCCCATATCAATATTAATC
1 TGGGCC-TAGCCCATATCAGTATCAATT
*
72983124 TGGGCCATAGCCCCT-TACAGTATCAGAGTAT
1 TGGGCC-TAGCCCATAT-CAGTATCA-A-T-T
72983155 ACTGGGCCTAGCCCATATCAGTATCAATT
1 --TGGGCCTAGCCCATATCAGTATCAATT
72983184 TGGGCCGTAGCCC
1 TGGGCC-TAGCCC
72983197 TATTACAAGT
Statistics
Matches: 59, Mismatches: 6, Indels: 16
0.73 0.07 0.20
Matches are distributed among these distances:
27 7 0.12
28 25 0.42
29 2 0.03
30 2 0.03
31 1 0.02
32 15 0.25
33 7 0.12
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.27
Consensus pattern (27 bp):
TGGGCCTAGCCCATATCAGTATCAATT
Found at i:72983203 original size:61 final size:61
Alignment explanation
Indices: 72983084--72983203 Score: 163
Period size: 60 Copynumber: 2.0 Consensus size: 61
72983074 CTATTCAGAA
* *
72983084 ATCAGAGTTAACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGT
1 ATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGT
* * *
72983145 ATCAGAG-TATACTGGGCC-TAGCCCATATCAGTATCAATTTGGGCCGTAGCCCTATTACA
1 ATCAGAGTTA-ACTGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTACA
72983204 AGTCGAGATA
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
60 32 0.62
61 20 0.38
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (61 bp):
ATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGT
Found at i:72983223 original size:60 final size:59
Alignment explanation
Indices: 72983084--72983232 Score: 142
Period size: 60 Copynumber: 2.5 Consensus size: 59
72983074 CTATTCAGAA
* * *
72983084 ATCAGAGT-TAACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAG
1 ATCAGAGTAT-ACTAGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG
* * * *
72983144 TATCAGAGTATACTGGGCCTAGCCCATATCAGTATCAATTTGGGCCGTAGCCCTATTACA-
1 -ATCAGAGTATACTAGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTACAG
* *
72983204 AGTC-GAGATATATTAGGCCTTGCCCATAT
1 A-TCAGAG-TATACTAGGCCTAGCCCATAT
72983233 TAACACAGTT
Statistics
Matches: 76, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
59 4 0.05
60 50 0.66
61 21 0.28
62 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (59 bp):
ATCAGAGTATACTAGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG
Found at i:72983278 original size:19 final size:19
Alignment explanation
Indices: 72983237--72983279 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
72983227 CCATATTAAC
* *
72983237 ACAGTTGGGCCCATTCAAT
1 ACAGTTGGGCCCATACAAA
72983256 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCAT-ACAAA
72983275 ACAGT
1 ACAGT
72983280 CTCATATGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.21
Consensus pattern (19 bp):
ACAGTTGGGCCCATACAAA
Found at i:72983925 original size:16 final size:15
Alignment explanation
Indices: 72983904--72983935 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
72983894 TCGAAATACC
72983904 GGCTTTTCGGCATTTT
1 GGCTTTTCGGC-TTTT
72983920 GGCTTTTCGGCTTTT
1 GGCTTTTCGGCTTTT
72983935 G
1 G
72983936 TCGATCTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.03, C:0.19, G:0.28, T:0.50
Consensus pattern (15 bp):
GGCTTTTCGGCTTTT
Found at i:72985517 original size:3 final size:3
Alignment explanation
Indices: 72985509--72985549 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
72985499 AAACATACGA
72985509 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
72985550 CATCCAAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:72986013 original size:52 final size:52
Alignment explanation
Indices: 72985956--72986059 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
72985946 CTTATTTAGC
72985956 AAATAAAATGATTTTTTTCGTAATTCTCTAACTGAGTTGGGATTCGAGTAAT
1 AAATAAAATGATTTTTTTCGTAATTCTCTAACTGAGTTGGGATTCGAGTAAT
72986008 AAATAAAATGATTTTTTTCGTAATTCTCTAACTGAGTTGGGATTCGAGTAAT
1 AAATAAAATGATTTTTTTCGTAATTCTCTAACTGAGTTGGGATTCGAGTAAT
72986060 TGGTGACACC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (52 bp):
AAATAAAATGATTTTTTTCGTAATTCTCTAACTGAGTTGGGATTCGAGTAAT
Found at i:72987443 original size:18 final size:18
Alignment explanation
Indices: 72987403--72987446 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
72987393 TGCTCCACCG
*
72987403 CCTAAACCTCCTGGTCCA
1 CCTAAACCTCCTGGCCCA
*
72987421 TCTAAACCTCC-GGCCCCA
1 CCTAAACCTCCTGG-CCCA
72987439 CCTAAACC
1 CCTAAACC
72987447 GCCGAGACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 2 0.09
18 20 0.91
ACGTcount: A:0.25, C:0.48, G:0.09, T:0.18
Consensus pattern (18 bp):
CCTAAACCTCCTGGCCCA
Found at i:72996219 original size:21 final size:21
Alignment explanation
Indices: 72996181--72996220 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
72996171 TTTGAAAACA
* *
72996181 TTAATAATTATTTTATAAATT
1 TTAATAATTATGTAATAAATT
*
72996202 TTAATAGTTATGTAATAAA
1 TTAATAATTATGTAATAAA
72996221 AAGAAAACTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (21 bp):
TTAATAATTATGTAATAAATT
Found at i:73003420 original size:6 final size:6
Alignment explanation
Indices: 73003411--73003490 Score: 117
Period size: 6 Copynumber: 13.2 Consensus size: 6
73003401 ATCTTTATGC
*
73003411 TTATTT TTATTT TTATTT TTATTT TTATCT TTATTT TTATTT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
*
73003459 TTATTT TTATGT TTATTT TGT-TTT TATATTT T
1 TTATTT TTATTT TTATTT T-TATTT T-TATTT T
73003491 GAACTTTATT
Statistics
Matches: 67, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
6 62 0.93
7 5 0.07
ACGTcount: A:0.16, C:0.01, G:0.03, T:0.80
Consensus pattern (6 bp):
TTATTT
Found at i:73029013 original size:2 final size:2
Alignment explanation
Indices: 73029001--73029049 Score: 73
Period size: 2 Copynumber: 25.0 Consensus size: 2
73028991 CACTTTCAAA
*
73029001 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
73029042 AT AA AT AT
1 AT AT AT AT
73029050 TCGACTTTCA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:73031704 original size:48 final size:48
Alignment explanation
Indices: 73031644--73031746 Score: 118
Period size: 48 Copynumber: 2.1 Consensus size: 48
73031634 GTCCAACTAT
* * * ** * *
73031644 GGTCTTATACTAGCTCTGCTCT-GCCTGTGTTGATGCCTATTCCTGATA
1 GGTCTTACACTAGCACT-CACTGGCCTGTGCCGATGCCTATCCCAGATA
*
73031692 GGTCTTACACTAGCACTCACTGGGCTGTGCCGATGCCTATCCCAGATA
1 GGTCTTACACTAGCACTCACTGGCCTGTGCCGATGCCTATCCCAGATA
73031740 GGTCTTA
1 GGTCTTA
73031747 TGCTTAGCAC
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
47 3 0.07
48 43 0.93
ACGTcount: A:0.17, C:0.27, G:0.22, T:0.33
Consensus pattern (48 bp):
GGTCTTACACTAGCACTCACTGGCCTGTGCCGATGCCTATCCCAGATA
Found at i:73032954 original size:38 final size:38
Alignment explanation
Indices: 73032903--73033211 Score: 456
Period size: 38 Copynumber: 8.1 Consensus size: 38
73032893 AAAAGCCCAA
* *
73032903 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
73032941 ATATATTACCAGCACGAAGCCTGTGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
73032979 ATATAATACCAGCACGAAGCCTGTGGGATTTAACCTGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* * *
73033017 ACATATTACCAGCACGAAGCCTGCGGGATTTAACCCGA
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
73033055 ATATAATACCAGCACGAAGCCTGTGGGATTTAACCTGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* * * * *
73033093 ACATATTACCAGCACGAAGCCTGCGAGATTTAATCAGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
73033131 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
73033169 ATATAATACCAGCATGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
73033207 ATATA
1 ATATA
73033212 CATGAAATAT
Statistics
Matches: 243, Mismatches: 28, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 243 1.00
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.22
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:73036187 original size:16 final size:16
Alignment explanation
Indices: 73036166--73036199 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
73036156 GTCAAGTGGT
*
73036166 TTTGGAAAATGAGGTA
1 TTTGGAAAATAAGGTA
73036182 TTTGGAAAATAAGGTA
1 TTTGGAAAATAAGGTA
73036198 TT
1 TT
73036200 GGGACCTCGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.26, T:0.35
Consensus pattern (16 bp):
TTTGGAAAATAAGGTA
Found at i:73037402 original size:37 final size:37
Alignment explanation
Indices: 73037361--73037482 Score: 141
Period size: 37 Copynumber: 3.5 Consensus size: 37
73037351 TATTAGAACT
* * *
73037361 AGAATCAAAATGAGAATCAGAAT-TGAAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAG-AATCAGGTAAC
73037398 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAAC
* *
73037435 AGAAT-----T-AGAATCATAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAAC
73037466 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
73037483 GTGAATGCAA
Statistics
Matches: 73, Mismatches: 5, Indels: 14
0.79 0.05 0.15
Matches are distributed among these distances:
31 28 0.38
32 1 0.01
36 1 0.01
37 42 0.58
38 1 0.01
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (37 bp):
AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:73037415 original size:6 final size:6
Alignment explanation
Indices: 73037397--73037482 Score: 77
Period size: 6 Copynumber: 14.0 Consensus size: 6
73037387 AATCAGGTGA
* *
73037397 CAGAAT CAAAAT CAGAAT CAGAAT CAGAAT CAGGTAA- CAGAAT TAGAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT
* * *
73037446 CATAAT CAGTAT CAGGTAA- CAGAAT CAAAAT CAGAAT
1 CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT
73037483 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
5 4 0.06
6 51 0.80
7 6 0.09
8 3 0.05
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.20
Consensus pattern (6 bp):
CAGAAT
Found at i:73037422 original size:31 final size:31
Alignment explanation
Indices: 73037406--73037482 Score: 118
Period size: 31 Copynumber: 2.5 Consensus size: 31
73037396 ACAGAATCAA
73037406 AATCAGAATCAGAATCAGAATCAGGTAACAG
1 AATCAGAATCAGAATCAGAATCAGGTAACAG
* * *
73037437 AATTAGAATCATAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGAATCAGGTAACAG
*
73037468 AATCAAAATCAGAAT
1 AATCAGAATCAGAAT
73037483 GTGAATGCAA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.21
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGAATCAGGTAACAG
Found at i:73037437 original size:25 final size:25
Alignment explanation
Indices: 73037409--73037479 Score: 74
Period size: 25 Copynumber: 2.8 Consensus size: 25
73037399 GAATCAAAAT
*
73037409 CAGAATCAGAATCAGAATCAGGTAA
1 CAGAATCAGAATCAAAATCAGGTAA
* * *
73037434 CAGAATTAGAATCATAATCA-GTAT
1 CAGAATCAGAATCAAAATCAGGTAA
73037458 CAGGTAA-CAGAATCAAAATCAG
1 CA-G-AATCAGAATCAAAATCAG
73037480 AATGTGAATG
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
24 5 0.13
25 31 0.82
26 2 0.05
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.20
Consensus pattern (25 bp):
CAGAATCAGAATCAAAATCAGGTAA
Found at i:73037444 original size:19 final size:19
Alignment explanation
Indices: 73037387--73037447 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 19
73037377 TCAGAATTGA
* *
73037387 AATCAGGTGACAGAATCAA
1 AATCAGGTAACAGAATCAG
73037406 AATCA-G-AATCAGAATCAG
1 AATCAGGTAA-CAGAATCAG
*
73037424 AATCAGGTAACAGAATTAG
1 AATCAGGTAACAGAATCAG
73037443 AATCA
1 AATCA
73037448 TAATCAGTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
17 1 0.03
18 14 0.39
19 19 0.53
20 2 0.06
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (19 bp):
AATCAGGTAACAGAATCAG
Found at i:73037649 original size:27 final size:27
Alignment explanation
Indices: 73037601--73037652 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
73037591 GCGAGGCTGC
*
73037601 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGATA
* * *
73037628 CAGATATTGTGGCTAGGCCACCAGA
1 CAGATATTGTGACGAAGCCACCAGA
73037653 ATAGATTTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGACGAAGCCACCAGATA
Found at i:73037667 original size:2 final size:2
Alignment explanation
Indices: 73037660--73037698 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
73037650 AGAATAGATT
73037660 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
73037699 GGCTAAGCCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:73038047 original size:27 final size:27
Alignment explanation
Indices: 73038017--73038533 Score: 649
Period size: 27 Copynumber: 19.2 Consensus size: 27
73038007 AACACCCTAG
* *
73038017 GGGTAAAATGGTAATTTTGTAAATTGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
73038044 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* *
73038071 -GGTAAAACAGTAACTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* * *
73038097 GGGTAAAACAGTAATTCTGTCAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* * *
73038124 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
** *
73038151 GGGTAAAATAGTAATTTCGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* *
73038178 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
** * *
73038205 GGGTAAAATAGTAGTTCTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* * *
73038232 GGGTAAAACGATAATTCTATAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
** * * *
73038259 GGGTAAAATAGTAACTCTATAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
*
73038286 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
73038313 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* *
73038340 GGGTAAAAAGGTAATTTTGTAAATCAA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* *
73038367 GGGTAAAAAGGTAATTTTATAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
*
73038394 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
73038421 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* *
73038448 GGGTAAAAAGGTAATTTTCTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
** *
73038475 GGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
** * *
73038502 GGGTAAAACAATAATTTTATAATTCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
73038529 GGGTA
1 GGGTA
73038534 CTTTGATAAT
Statistics
Matches: 436, Mismatches: 53, Indels: 2
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 0.06
27 412 0.94
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GGGTAAAACGGTAATTTTGTAAATCGA
Found at i:73038571 original size:54 final size:54
Alignment explanation
Indices: 73038376--73038679 Score: 170
Period size: 54 Copynumber: 5.6 Consensus size: 54
73038366 AGGGTAAAAA
* *** * * ****
73038376 GGTAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTATAATTCGAGGGTACTTT
** *** * * ***
73038430 GGTAATTTTGTAAATCGAGGGTA-AAAAGGTAATTTTCTAAATCGAGGGTAAAAT
1 GGTAATTTTACAAATCGAGGGTATTTCA-GTAATTTTATAATTCGAGGGTACTTT
* * ** *** *
73038484 AGTAATTCTGTAAATCGAGGGTAAAACAATAATTTTATAATTCGAGGGTACTTT
1 GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTATAATTCGAGGGTACTTT
* * *
73038538 GATAATTTTACAAGTCAAGGGTATTTCAGTAATTTTGCA-AACTT--AGGGTA-TTT
1 GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTT--ATAA-TTCGAGGGTACTTT
* ** ** *
73038591 CGGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAACCGGGGGTACTTT
1 -GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTATAATTCGAGGGTACTTT
* *
73038646 GGTAATTTTACAACT-GGGGGTATTTCAGTAATTT
1 GGTAATTTTACAAATCGAGGGTATTTCAGTAATTT
73038680 GGTAAACTAA
Statistics
Matches: 202, Mismatches: 38, Indels: 21
0.77 0.15 0.08
Matches are distributed among these distances:
52 1 0.00
53 23 0.11
54 167 0.83
55 8 0.04
56 3 0.01
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.35
Consensus pattern (54 bp):
GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTATAATTCGAGGGTACTTT
Found at i:73038676 original size:26 final size:26
Alignment explanation
Indices: 73038513--73038679 Score: 113
Period size: 27 Copynumber: 6.2 Consensus size: 26
73038503 GGTAAAACAA
* * *
73038513 TAATTTTATAATTCGAGGGTACTTT-GA
1 TAATTTTACAACT-GAGGGTA-TTTCGG
* * *
73038540 TAATTTTACAAGTCAAGGGTATTTCAG
1 TAATTTTACAACT-GAGGGTATTTCGG
* *
73038567 TAATTTTGCAAACTTAGGGTATTTCGG
1 TAATTTTAC-AACTGAGGGTATTTCGG
* * *
73038594 TAATTTTACAAATCGAGGATATTTGGG
1 TAATTTTACAACT-GAGGGTATTTCGG
* * *
73038621 TAATTTTATAAACCGGGGGTACTTT-GG
1 TAATTTTA-CAACTGAGGGTA-TTTCGG
* *
73038648 TAATTTTACAACTGGGGGTATTTCAG
1 TAATTTTACAACTGAGGGTATTTCGG
73038674 TAATTT
1 TAATTT
73038680 GGTAAACTAA
Statistics
Matches: 112, Mismatches: 22, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
25 3 0.03
26 23 0.21
27 78 0.70
28 8 0.07
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (26 bp):
TAATTTTACAACTGAGGGTATTTCGG
Found at i:73046487 original size:29 final size:29
Alignment explanation
Indices: 73046425--73046527 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
73046415 GTGACGAGAT
* * *
73046425 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
73046454 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
73046483 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
73046512 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
73046528 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:73048983 original size:41 final size:41
Alignment explanation
Indices: 73048926--73049008 Score: 141
Period size: 41 Copynumber: 2.0 Consensus size: 41
73048916 CAATGGATGC
*
73048926 ATAAAAAGTGATTAGAAAAGA-TGATGATGCGTTTTTAGCTT
1 ATAAAAAGTGATTAGAAAAGATTG-TGATGCATTTTTAGCTT
73048967 ATAAAAAGTGATTAGAAAAGATTGTGATGCATTTTTAGCTT
1 ATAAAAAGTGATTAGAAAAGATTGTGATGCATTTTTAGCTT
73049008 A
1 A
73049009 CATTCTGGAT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
41 38 0.95
42 2 0.05
ACGTcount: A:0.40, C:0.05, G:0.20, T:0.35
Consensus pattern (41 bp):
ATAAAAAGTGATTAGAAAAGATTGTGATGCATTTTTAGCTT
Found at i:73051720 original size:33 final size:34
Alignment explanation
Indices: 73051677--73051748 Score: 119
Period size: 33 Copynumber: 2.1 Consensus size: 34
73051667 AAGTTCTAGA
* *
73051677 CTAAGACTCGAAACGTAAACTGACAATTAAAAAC
1 CTAAGACTCGAAACGTAAAATGAAAATTAAAAAC
73051711 CTAAG-CTCGAAACGTAAAATGAAAATTAAAAAC
1 CTAAGACTCGAAACGTAAAATGAAAATTAAAAAC
73051744 CTAAG
1 CTAAG
73051749 GCGAAGCCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 31 0.86
34 5 0.14
ACGTcount: A:0.51, C:0.18, G:0.12, T:0.18
Consensus pattern (34 bp):
CTAAGACTCGAAACGTAAAATGAAAATTAAAAAC
Found at i:73052713 original size:27 final size:27
Alignment explanation
Indices: 73052683--73052735 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
73052673 CCATGATTTT
* **
73052683 TGTCCCGACGGACTATCTTGTGTTTAA
1 TGTCCCGACGAACTATCCCGTGTTTAA
*
73052710 TGTCCCGTCGAACTATCCCGTGTTTA
1 TGTCCCGACGAACTATCCCGTGTTTA
73052736 GCATCCCGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.17, C:0.26, G:0.21, T:0.36
Consensus pattern (27 bp):
TGTCCCGACGAACTATCCCGTGTTTAA
Found at i:73052997 original size:45 final size:45
Alignment explanation
Indices: 73052927--73053059 Score: 196
Period size: 45 Copynumber: 3.0 Consensus size: 45
73052917 GTCCCATTAC
* * *
73052927 CATGATGTCATGGCATCTTTCAGCCATGATCTTACTCGTCTTTAT
1 CATGATGCCATAGCATCTTTCAGCCATGATCTTACTCATCTTTAT
* *
73052972 CATGATGCCATAGCAACTTTTAGCCATGATCTTACTCATCTTTAT
1 CATGATGCCATAGCATCTTTCAGCCATGATCTTACTCATCTTTAT
* *
73053017 CATGATGCCATAGCATCTTTCAGCTATGTTCTTACTCAT-TTTA
1 CATGATGCCATAGCATCTTTCAGCCATGATCTTACTCATCTTTA
73053060 AGCGTATAGC
Statistics
Matches: 79, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
44 4 0.05
45 75 0.95
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (45 bp):
CATGATGCCATAGCATCTTTCAGCCATGATCTTACTCATCTTTAT
Found at i:73053014 original size:23 final size:23
Alignment explanation
Indices: 73052940--73053014 Score: 57
Period size: 23 Copynumber: 3.3 Consensus size: 23
73052930 GATGTCATGG
*
73052940 CATCTTTCAGCCATGATCTTACT
1 CATCTTTTAGCCATGATCTTACT
* * * *
73052963 CGTC-TTTA-TCATGATGCCATA-G
1 CATCTTTTAGCCATGAT--CTTACT
*
73052985 CAACTTTTAGCCATGATCTTACT
1 CATCTTTTAGCCATGATCTTACT
73053008 CATCTTT
1 CATCTTT
73053015 ATCATGATGC
Statistics
Matches: 36, Mismatches: 11, Indels: 10
0.63 0.19 0.18
Matches are distributed among these distances:
21 6 0.17
22 8 0.22
23 16 0.44
24 6 0.17
ACGTcount: A:0.23, C:0.27, G:0.11, T:0.40
Consensus pattern (23 bp):
CATCTTTTAGCCATGATCTTACT
Found at i:73053022 original size:21 final size:21
Alignment explanation
Indices: 73052951--73053022 Score: 56
Period size: 21 Copynumber: 3.3 Consensus size: 21
73052941 ATCTTTCAGC
*
73052951 CATGATCTTACTCGTCTTTAT
1 CATGATCTTACTCATCTTTAT
* * * *
73052972 CATGATGCCATA-GCAACTTTTAGC
1 CATGAT--CTTACTCATC-TTTA-T
73052996 CATGATCTTACTCATCTTTAT
1 CATGATCTTACTCATCTTTAT
73053017 CATGAT
1 CATGAT
73053023 GCCATAGCAT
Statistics
Matches: 37, Mismatches: 9, Indels: 10
0.66 0.16 0.18
Matches are distributed among these distances:
21 12 0.32
22 9 0.24
23 10 0.27
24 6 0.16
ACGTcount: A:0.25, C:0.24, G:0.11, T:0.40
Consensus pattern (21 bp):
CATGATCTTACTCATCTTTAT
Found at i:73053033 original size:22 final size:22
Alignment explanation
Indices: 73052965--73053036 Score: 67
Period size: 22 Copynumber: 3.2 Consensus size: 22
73052955 ATCTTACTCG
73052965 TCTTTATCATGATGCCATAGCA
1 TCTTTATCATGATGCCATAGCA
* * * *
73052987 ACTTTTAGCCATGAT--CTTACTCA
1 TC-TTTA-TCATGATGCCATA-GCA
73053010 TCTTTATCATGATGCCATAGCA
1 TCTTTATCATGATGCCATAGCA
73053032 TCTTT
1 TCTTT
73053037 CAGCTATGTT
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
21 6 0.16
22 15 0.41
23 10 0.27
24 6 0.16
ACGTcount: A:0.25, C:0.24, G:0.11, T:0.40
Consensus pattern (22 bp):
TCTTTATCATGATGCCATAGCA
Found at i:73056982 original size:2 final size:2
Alignment explanation
Indices: 73056975--73057003 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
73056965 GTGGTAAAAG
73056975 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
73057004 AAGCAAATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:73068798 original size:10 final size:10
Alignment explanation
Indices: 73068783--73068819 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
73068773 GTCTGTAAGT
* *
73068783 TTTCTGAGTC
1 TTTCTGATTG
73068793 TTTCTGATTG
1 TTTCTGATTG
73068803 TTTCTGATTG
1 TTTCTGATTG
73068813 TTTCTGA
1 TTTCTGA
73068820 AATATCTGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.11, C:0.14, G:0.19, T:0.57
Consensus pattern (10 bp):
TTTCTGATTG
Found at i:73074014 original size:27 final size:28
Alignment explanation
Indices: 73073982--73074050 Score: 122
Period size: 27 Copynumber: 2.5 Consensus size: 28
73073972 TAGTGATTCT
73073982 GCACACTTAGTGCTATATAATC-AACTC
1 GCACACTTAGTGCTATATAATCAAACTC
*
73074009 GCACACTTAGTGCTATATGATCAAACTC
1 GCACACTTAGTGCTATATAATCAAACTC
73074037 GCACACTTAGTGCT
1 GCACACTTAGTGCT
73074051 GTACAAATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
GCACACTTAGTGCTATATAATCAAACTC
Found at i:73080486 original size:27 final size:28
Alignment explanation
Indices: 73080453--73080551 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
73080443 ATAGTGATTC
73080453 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
73080480 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
73080508 CGCACACTTAGTGCTGTACAAATTTAAACC
1 CGCACACTTAGTGCTATA-TAA-TCAAACT
73080538 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73080552 CATTCTCATG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 22 0.35
28 21 0.33
29 1 0.02
30 19 0.30
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:73089061 original size:40 final size:38
Alignment explanation
Indices: 73089028--73089137 Score: 130
Period size: 40 Copynumber: 2.8 Consensus size: 38
73089018 TATATTCAGA
73089028 ACTAAGTGTGCGATTTGAAATAGCTTCGGCTATAAATAGC
1 ACTAAGTGTGCGATTTGAAATAGCTTCGGCTAT--ATAGC
* * *
73089068 ACTAAGTGTGCGAATTGGAATAGCTTTGGCTATATGAGGC
1 ACTAAGTGTGCGATTTGAAATAGCTTCGGCTATAT-A-GC
* *
73089108 ACTAAGTGTGCGATACTGAGATAGCTTCGG
1 ACTAAGTGTGCGAT-TTGAAATAGCTTCGG
73089138 TTTATTGAGA
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.03
39 1 0.02
40 45 0.76
41 11 0.19
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (38 bp):
ACTAAGTGTGCGATTTGAAATAGCTTCGGCTATATAGC
Found at i:73091560 original size:40 final size:40
Alignment explanation
Indices: 73091501--73091642 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
73091491 AAATTGAATG
* * *
73091501 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
73091541 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
73091581 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
73091621 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
73091643 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:73091643 original size:40 final size:39
Alignment explanation
Indices: 73091540--73091668 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
73091530 TGCTGGAAAT
* * *
73091540 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
73091580 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
73091620 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
73091660 TATATCCGG
1 TATATCCGG
73091669 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:73099573 original size:40 final size:40
Alignment explanation
Indices: 73099507--73099673 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
73099497 AAATTGAATG
* * *
73099507 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
73099546 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
73099586 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
73099626 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
73099666 ATATCCGG
1 ATATCCGG
73099674 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:73107590 original size:40 final size:40
Alignment explanation
Indices: 73107524--73107690 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
73107514 AAATTGAATG
* * *
73107524 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
73107563 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
73107603 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
73107643 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
73107683 ATATCCGG
1 ATATCCGG
73107691 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:73111952 original size:23 final size:24
Alignment explanation
Indices: 73111915--73111974 Score: 77
Period size: 23 Copynumber: 2.5 Consensus size: 24
73111905 TATAGCTCGA
73111915 TCGAGCAATCCTGTTATA-AGCCTC
1 TCGAGC-ATCCTGTTATATAGCCTC
**
73111939 TCGAGCATCCTGTTATATAGTTTC
1 TCGAGCATCCTGTTATATAGCCTC
73111963 TGCGAGCATCCT
1 T-CGAGCATCCT
73111975 AATCGGTAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
23 11 0.34
24 11 0.34
25 10 0.31
ACGTcount: A:0.22, C:0.27, G:0.18, T:0.33
Consensus pattern (24 bp):
TCGAGCATCCTGTTATATAGCCTC
Found at i:73113225 original size:27 final size:27
Alignment explanation
Indices: 73113188--73113253 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 27
73113178 AGCATGGCTG
*
73113188 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGACAGAGCCA
**
73113214 CCAGATACAGATAATTGTGGTAGAGCCA
1 CCAGA-ACAGATAATTGTGACAGAGCCA
73113242 CCAGAACAGATA
1 CCAGAACAGATA
73113254 GCACCAGATT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 5 0.14
27 15 0.43
28 15 0.43
ACGTcount: A:0.41, C:0.20, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGACAGAGCCA
Found at i:73113427 original size:26 final size:27
Alignment explanation
Indices: 73113391--73113454 Score: 94
Period size: 26 Copynumber: 2.4 Consensus size: 27
73113381 CAAAAGTAAC
* *
73113391 CCTAGGGGTATAATGGTAATTT-TATA
1 CCTAGGGGTATAATAGTAATTTCCATA
73113417 CCTAGGGGTATAATAGTAATTTCCATA
1 CCTAGGGGTATAATAGTAATTTCCATA
*
73113444 CATAGGGGTAT
1 CCTAGGGGTAT
73113455 TCAAGTAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 21 0.62
27 13 0.38
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.34
Consensus pattern (27 bp):
CCTAGGGGTATAATAGTAATTTCCATA
Found at i:73113721 original size:16 final size:15
Alignment explanation
Indices: 73113700--73113733 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
73113690 TCTCAAAATA
73113700 TTGGCTTTTCGGCATT
1 TTGGCTTTTCGGC-TT
73113716 TTGGCTTTTCGGCTT
1 TTGGCTTTTCGGCTT
73113731 TTG
1 TTG
73113734 CCGATCTAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.03, C:0.18, G:0.26, T:0.53
Consensus pattern (15 bp):
TTGGCTTTTCGGCTT
Found at i:73117143 original size:21 final size:21
Alignment explanation
Indices: 73117118--73117159 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
73117108 TTTAATTCAA
**
73117118 ATGAATTATGTATGAATGCAC
1 ATGAATTACATATGAATGCAC
73117139 ATGAATTACATATGAATGCAC
1 ATGAATTACATATGAATGCAC
73117160 TAACTTGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (21 bp):
ATGAATTACATATGAATGCAC
Found at i:73127249 original size:20 final size:19
Alignment explanation
Indices: 73127211--73127250 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
73127201 CATCAATGGA
* *
73127211 AACTTTCAAAATCTTTAAC
1 AACTTTCAAAATATGTAAC
73127230 AACTTTGCAAAATATGTAAC
1 AACTTT-CAAAATATGTAAC
73127250 A
1 A
73127251 CCCCTTACCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (19 bp):
AACTTTCAAAATATGTAAC
Found at i:73129740 original size:25 final size:25
Alignment explanation
Indices: 73129711--73129758 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
73129701 TTATAATATG
* * *
73129711 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
73129736 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
73129759 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:73129827 original size:20 final size:20
Alignment explanation
Indices: 73129802--73129860 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
73129792 TAAATATGGT
73129802 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
73129822 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
73129842 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
73129861 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:73129941 original size:23 final size:24
Alignment explanation
Indices: 73129911--73130005 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
73129901 GAGGAAGTGA
73129911 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
73129934 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
73129958 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
73129982 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
73130006 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:73129979 original size:47 final size:49
Alignment explanation
Indices: 73129912--73130005 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
73129902 AGGAAGTGAA
*
73129912 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
73129959 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
73130006 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:73130248 original size:38 final size:38
Alignment explanation
Indices: 73130197--73130359 Score: 232
Period size: 38 Copynumber: 4.4 Consensus size: 38
73130187 CGTTTACAGT
73130197 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
73130235 AAAGGCTTCGGCCCAG-----T--AATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
73130266 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
* *
73130304 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATACGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
73130342 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
73130360 GCATGATTGA
Statistics
Matches: 112, Mismatches: 5, Indels: 15
0.85 0.04 0.11
Matches are distributed among these distances:
31 29 0.26
33 1 0.01
36 1 0.01
38 68 0.61
39 13 0.12
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
Found at i:73130259 original size:31 final size:31
Alignment explanation
Indices: 73130221--73130336 Score: 142
Period size: 31 Copynumber: 3.5 Consensus size: 31
73130211 AGTATTATGA
73130221 AATATGAAACATGAAAAGGCTTCGGCCCAGT
1 AATATGAAACATGAAAAGGCTTCGGCCCAGT
*
73130252 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTAT
1 AATATGAAACATGAAAAGGCTTCGGCCCAG-----T
73130288 GAAATATGAAACATGAAAAGGCTTCGGCCCAGT
1 --AATATGAAACATGAAAAGGCTTCGGCCCAGT
* *
73130321 ATTATGAAATATGAAA
1 AATATGAAACATGAAA
73130337 TACGAAAAGG
Statistics
Matches: 74, Mismatches: 4, Indels: 14
0.80 0.04 0.15
Matches are distributed among these distances:
31 43 0.58
33 1 0.01
36 1 0.01
38 29 0.39
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (31 bp):
AATATGAAACATGAAAAGGCTTCGGCCCAGT
Found at i:73130273 original size:69 final size:69
Alignment explanation
Indices: 73130197--73130336 Score: 271
Period size: 69 Copynumber: 2.0 Consensus size: 69
73130187 CGTTTACAGT
73130197 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
73130262 ATGA
66 ATGA
*
73130266 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
73130331 ATGA
66 ATGA
73130335 AA
1 AA
73130337 TACGAAAAGG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (69 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
ATGA
Found at i:73138092 original size:25 final size:25
Alignment explanation
Indices: 73138063--73138110 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
73138053 TTATAATATG
* * *
73138063 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
73138088 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
73138111 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:73138179 original size:20 final size:20
Alignment explanation
Indices: 73138154--73138212 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
73138144 TAAATATGGT
73138154 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
73138174 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
73138194 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
73138213 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:73138293 original size:23 final size:24
Alignment explanation
Indices: 73138263--73138356 Score: 122
Period size: 23 Copynumber: 4.0 Consensus size: 24
73138253 GAGGAAGTGA
73138263 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
73138286 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
73138310 GAAAGGGCTT-TGGCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
73138333 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
73138357 ATGATAAAGC
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
23 39 0.63
24 15 0.24
25 8 0.13
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:73138336 original size:47 final size:48
Alignment explanation
Indices: 73138264--73138356 Score: 129
Period size: 47 Copynumber: 2.0 Consensus size: 48
73138254 AGGAAGTGAA
*
73138264 AAAGGGCTTATGCCCCAGTTATAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATAAAAGAGGC-TAGGCCTCCAGTTATTG
*
73138311 AAAGGGCTT-TGGCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTATGCCCCAGTTA-TAAAAGAGGCTAGGCCTCCAGTTAT
73138357 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
46 10 0.24
47 20 0.49
48 11 0.27
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (48 bp):
AAAGGGCTTATGCCCCAGTTATAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:73138599 original size:38 final size:38
Alignment explanation
Indices: 73138548--73138710 Score: 223
Period size: 38 Copynumber: 4.4 Consensus size: 38
73138538 CGTTTACAGT
73138548 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
73138586 AAAGGCTTCGGCCCAG-----T--AATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
73138617 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
* * *
73138655 AAAGGCTTCAGCCCAGTATTATGAAATATGAAATACGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
73138693 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
73138711 GCATGATTGA
Statistics
Matches: 110, Mismatches: 7, Indels: 15
0.83 0.05 0.11
Matches are distributed among these distances:
31 29 0.26
33 1 0.01
36 1 0.01
38 67 0.61
39 12 0.11
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
Found at i:73138610 original size:31 final size:31
Alignment explanation
Indices: 73138572--73138687 Score: 133
Period size: 31 Copynumber: 3.5 Consensus size: 31
73138562 AGTATTATGA
73138572 AATATGAAACATGAAAAGGCTTCGGCCCAGT
1 AATATGAAACATGAAAAGGCTTCGGCCCAGT
*
73138603 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTAT
1 AATATGAAACATGAAAAGGCTTCGGCCCAG-----T
*
73138639 GAAATATGAAACATGAAAAGGCTTCAGCCCAGT
1 --AATATGAAACATGAAAAGGCTTCGGCCCAGT
* *
73138672 ATTATGAAATATGAAA
1 AATATGAAACATGAAA
73138688 TACGAAAAGG
Statistics
Matches: 73, Mismatches: 5, Indels: 14
0.79 0.05 0.15
Matches are distributed among these distances:
31 43 0.59
33 1 0.01
36 1 0.01
38 28 0.38
ACGTcount: A:0.42, C:0.15, G:0.20, T:0.23
Consensus pattern (31 bp):
AATATGAAACATGAAAAGGCTTCGGCCCAGT
Done.