Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 256 of 444
Found at i:73138624 original size:69 final size:69
Alignment explanation
Indices: 73138548--73138687 Score: 262
Period size: 69 Copynumber: 2.0 Consensus size: 69
73138538 CGTTTACAGT
*
73138548 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCAGCCCAGTAATATGAAAT
73138613 ATGA
66 ATGA
*
73138617 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCAGCCCAGTATTATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCAGCCCAGTAATATGAAAT
73138682 ATGA
66 ATGA
73138686 AA
1 AA
73138688 TACGAAAAGG
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.40, C:0.16, G:0.21, T:0.24
Consensus pattern (69 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCAGCCCAGTAATATGAAAT
ATGA
Found at i:73140543 original size:33 final size:33
Alignment explanation
Indices: 73140494--73140618 Score: 169
Period size: 33 Copynumber: 3.7 Consensus size: 33
73140484 GTCATACCTA
*
73140494 GATTACCAGTCCAGGCTAAATCCAGTCGATTAG
1 GATTACCAGTCCAGGCTAAATCCAGTCAATTAG
* *
73140527 GATTACTAGTCTAGGCTAAATCCAGTCAATTAGGACG
1 GATTACCAGTCCAGGCTAAATCCAGTCAATT---A-G
73140564 GATTACCAGTCCAGGCTAAATCCAGTCAATTAG
1 GATTACCAGTCCAGGCTAAATCCAGTCAATTAG
* *
73140597 AATTACTAGTCCAGGCTAAATC
1 GATTACCAGTCCAGGCTAAATC
73140619 TGAATTGAAA
Statistics
Matches: 81, Mismatches: 7, Indels: 8
0.84 0.07 0.08
Matches are distributed among these distances:
33 49 0.60
34 1 0.01
36 1 0.01
37 30 0.37
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (33 bp):
GATTACCAGTCCAGGCTAAATCCAGTCAATTAG
Found at i:73140872 original size:27 final size:27
Alignment explanation
Indices: 73140842--73140896 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
73140832 TTCCTACATT
73140842 ACACATTCAATTCCACACAAAAATCAA
1 ACACATTCAATTCCACACAAAAATCAA
73140869 ACACATTCAATTCCACACAAAAATCAA
1 ACACATTCAATTCCACACAAAAATCAA
73140896 A
1 A
73140897 ATCAACATAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.53, C:0.29, G:0.00, T:0.18
Consensus pattern (27 bp):
ACACATTCAATTCCACACAAAAATCAA
Found at i:73152590 original size:40 final size:40
Alignment explanation
Indices: 73152489--73152700 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
73152479 TATTCGAATG
* * *
73152489 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
73152530 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
73152570 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * * *
73152610 ATATCCGGGCTAAGTCCCAAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
73152650 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
73152689 ATATCC-GGCTAA
1 ATATCCGGGCTAA
73152701 ATCCTGAAGA
Statistics
Matches: 143, Mismatches: 28, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
38 6 0.04
39 15 0.10
40 94 0.66
41 28 0.20
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:73157519 original size:39 final size:40
Alignment explanation
Indices: 73157414--73157623 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
73157404 TATTCGAATG
* * *
73157414 ATAT-CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
73157454 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * *
73157494 ATATCCGGGC-AAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
73157533 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
73157573 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
73157612 ATATCC-GGCTAA
1 ATATCCGGGCTAA
73157624 ATACCGAAGA
Statistics
Matches: 144, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
38 6 0.04
39 49 0.34
40 66 0.46
41 23 0.16
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:73157603 original size:79 final size:81
Alignment explanation
Indices: 73157414--73157596 Score: 248
Period size: 79 Copynumber: 2.3 Consensus size: 81
73157404 TATTCGAATG
* * *
73157414 ATAT-CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGATCCGAAGGC
* * *
73157478 ATTTGTGCGAGTTACT
66 ATTTATGCGAGTGACC
* *
73157494 ATATCCGGGC-AAAACCCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGAT-CCGAAGG
*
73157556 CATTTATGCTAGTGACC
65 CATTTATGCGAGTGACC
73157573 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
73157597 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
78 1 0.01
79 49 0.54
80 35 0.39
81 5 0.06
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGATCCGAAGGC
ATTTATGCGAGTGACC
Found at i:73157615 original size:79 final size:79
Alignment explanation
Indices: 73157414--73157632 Score: 239
Period size: 79 Copynumber: 2.8 Consensus size: 79
73157404 TATTCGAATG
* * *
73157414 ATAT-CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAGTGACTATATCCGGGCTAAG-TCCGAAGGC
* * *
73157478 ATTTGTGCGAGTTACT
64 ATTTATGCGAGTGACC
* * *
73157494 ATATCCGGGC-AAAACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGT-CCGAAGGCA
*
73157558 TTTATGCTAGTGACC
65 TTTATGCGAGTGACC
* * ** *
73157573 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTTATATCC-GGCTAAATACCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGT-CCGAAG
73157633 ATACTTGGGT
Statistics
Matches: 118, Mismatches: 18, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
78 14 0.12
79 65 0.55
80 34 0.29
81 5 0.04
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCGAAGGCAT
TTATGCGAGTGACC
Found at i:73166053 original size:40 final size:40
Alignment explanation
Indices: 73166000--73166218 Score: 257
Period size: 40 Copynumber: 5.5 Consensus size: 40
73165990 TATTCGAATG
* *
73166000 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAATGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
73166040 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTGACT
* * *
73166080 ATATCCGGGCCAA-ACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
73166119 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * **
73166159 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
73166198 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
73166219 ATACTTGGGT
Statistics
Matches: 151, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
38 13 0.09
39 48 0.32
40 89 0.59
41 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:73166188 original size:79 final size:80
Alignment explanation
Indices: 73166000--73166218 Score: 266
Period size: 79 Copynumber: 2.8 Consensus size: 80
73165990 TATTCGAATG
* * * *
73166000 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAATGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAG-TCCCGAAGGC
* * *
73166064 ATTTGTGCGAGTTACT
65 ATTTATGCGAGTGACC
* *
73166080 ATATCCGGGCCAA-ACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
*
73166144 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
* * ** *
73166159 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAG
73166219 ATACTTGGGT
Statistics
Matches: 120, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
78 15 0.12
79 83 0.69
80 22 0.18
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:73174086 original size:40 final size:40
Alignment explanation
Indices: 73173985--73174204 Score: 241
Period size: 40 Copynumber: 5.5 Consensus size: 40
73173975 TATTCGAATG
* * *
73173985 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
73174026 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
73174066 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
73174106 ATATCCGGGCTAAG-TCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
73174145 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
73174184 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
73174205 ATACTTGGGT
Statistics
Matches: 151, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
37 1 0.01
38 13 0.09
39 50 0.33
40 59 0.39
41 28 0.19
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:73174138 original size:39 final size:39
Alignment explanation
Indices: 73173985--73174204 Score: 228
Period size: 39 Copynumber: 5.5 Consensus size: 39
73173975 TATTCGAATG
*
73173985 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCT-AGTGACT
* * *
73174026 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAGTGACT
* ** *
73174066 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGG-CTAAGTCCGAAGGCATTTGTGCTAGTGACT
* *
73174106 ATATCCGGGCTAAGTCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACT
* * * **
73174145 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAGTGACT
*
73174184 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGT-CCGAAG
73174205 ATACTTGGGT
Statistics
Matches: 149, Mismatches: 26, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
38 12 0.08
39 53 0.36
40 52 0.35
41 31 0.21
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACT
Found at i:73174163 original size:79 final size:81
Alignment explanation
Indices: 73173985--73174168 Score: 264
Period size: 79 Copynumber: 2.3 Consensus size: 81
73173975 TATTCGAATG
* * *
73173985 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGATCCGAAGGC
* * *
73174050 ATTTGTGCGAGTTACT
66 ATTTATGCGAGTGACC
* * *
73174066 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAG-TCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGATCCGAAGGC
*
73174129 ATTTATGCTAGTGACC
66 ATTTATGCGAGTGACC
73174145 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
73174169 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
79 43 0.47
80 19 0.21
81 29 0.32
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGATCCGAAGGC
ATTTATGCGAGTGACC
Found at i:73184302 original size:40 final size:39
Alignment explanation
Indices: 73184257--73184386 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
73184247 CGGAATATAA
73184257 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
73184297 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
73184337 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
73184377 CCGGATATAA
1 CCGGATATAA
73184387 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:73184401 original size:40 final size:40
Alignment explanation
Indices: 73184273--73184424 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
73184263 ATAACCATGT
* * *
73184273 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
73184313 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
73184353 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
73184393 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
73184425 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:73184407 original size:80 final size:80
Alignment explanation
Indices: 73184273--73184422 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
73184263 ATAACCATGT
*
73184273 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
73184337 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
73184353 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
73184416 CCCGGAT
64 CCCGGAT
73184423 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:73197925 original size:25 final size:25
Alignment explanation
Indices: 73197897--73198019 Score: 147
Period size: 25 Copynumber: 4.7 Consensus size: 25
73197887 GAACTAGAAT
*
73197897 CAGAATCAGAATCAAAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGGTGA
*
73197922 CAGAATCAGAATCAGAATCAGAATCAGAA
1 CAGAATCAGAATCAGAATCAG-GT--G-A
* *
73197951 TCAGAATCAGAATTAGAATTAGGTGA
1 -CAGAATCAGAATCAGAATCAGGTGA
*
73197977 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGGTGA
*
73198002 CAGAATCAGAACCAGAAT
1 CAGAATCAGAATCAGAAT
73198020 GTGAATGCAA
Statistics
Matches: 86, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
25 61 0.71
26 2 0.02
27 1 0.01
28 1 0.01
29 2 0.02
30 19 0.22
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTGA
Found at i:73197951 original size:55 final size:55
Alignment explanation
Indices: 73197883--73197994 Score: 181
Period size: 55 Copynumber: 2.0 Consensus size: 55
73197873 AAGAAACATT
73197883 ATCAGAACTAGAATCAGAATCAGAATCAAAATCAGGTGACAGAATCAGAATCAGA
1 ATCAGAACTAGAATCAGAATCAGAATCAAAATCAGGTGACAGAATCAGAATCAGA
* * *
73197938 ATCAGAA-TCAGAATCAGAATCAGAATTAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAACT-AGAATCAGAATCAGAATCAAAATCAGGTGACAGAATCAGAATCAGA
73197993 AT
1 AT
73197995 TAGGTGACAG
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
54 1 0.02
55 52 0.98
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (55 bp):
ATCAGAACTAGAATCAGAATCAGAATCAAAATCAGGTGACAGAATCAGAATCAGA
Found at i:73198012 original size:6 final size:6
Alignment explanation
Indices: 73197883--73197994 Score: 113
Period size: 6 Copynumber: 18.3 Consensus size: 6
73197873 AAGAAACATT
* *
73197883 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAAA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
73197932 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATTAGA ATTAG- GTGACAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
73197981 ATCAGA ATCAGA AT
1 ATCAGA ATCAGA AT
73197995 TAGGTGACAG
Statistics
Matches: 90, Mismatches: 8, Indels: 16
0.79 0.07 0.14
Matches are distributed among these distances:
5 3 0.03
6 79 0.88
7 6 0.07
8 2 0.02
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:73198018 original size:31 final size:30
Alignment explanation
Indices: 73197892--73198019 Score: 109
Period size: 31 Copynumber: 4.5 Consensus size: 30
73197882 TATCAGAACT
* *
73197892 AGAATCAGAATCAGAATCAAAATCAGGTGAC
1 AGAATCAGAA-CAGAATCAGAATTAGGTGAC
73197923 AGAATCAGAATCAGAATCAG-A--A--T--C
1 AGAATCAGAA-CAGAATCAGAATTAGGTGAC
*
73197947 AGAATCAGAATCAGAATTAGAATTAGGTGAC
1 AGAATCAGAA-CAGAATCAGAATTAGGTGAC
73197978 AGAAT-----CAGAATCAGAATTAGGTGAC
1 AGAATCAGAACAGAATCAGAATTAGGTGAC
73198003 AGAATCAGAACCAGAAT
1 AGAATCAGAA-CAGAAT
73198020 GTGAATGCAA
Statistics
Matches: 81, Mismatches: 3, Indels: 26
0.74 0.03 0.24
Matches are distributed among these distances:
24 20 0.25
25 25 0.31
26 1 0.01
27 1 0.01
28 1 0.01
29 1 0.01
30 1 0.01
31 31 0.38
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.18
Consensus pattern (30 bp):
AGAATCAGAACAGAATCAGAATTAGGTGAC
Found at i:73198446 original size:27 final size:27
Alignment explanation
Indices: 73198413--73198741 Score: 397
Period size: 27 Copynumber: 12.2 Consensus size: 27
73198403 AACACCCTAG
* * *
73198413 GGGTAAAACGGTAATTTTATAAATCAA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* * *
73198440 AGTTAAAACGATAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
** *
73198467 GGGTAAAACAATAATTCTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
73198494 GGGTAAAACGGTAATTCTATAGATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
** * *
73198521 GGGTAAAATAGTAATTTTGTAAATCAA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* * *
73198548 GGGTAAAATGGTAATTTTGTAAATCAA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
73198575 GGGTAAAATGATAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
73198602 GGGTAAAACGGTAATTCTATAAATCAA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* * *
73198629 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
73198656 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
73198683 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
73198710 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
73198737 GGGTA
1 GGGTA
73198742 CTTTGGTAAT
Statistics
Matches: 265, Mismatches: 37, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 265 1.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
GGGTAAAACGGTAATTCTGTAAATCGA
Found at i:73198777 original size:27 final size:26
Alignment explanation
Indices: 73198731--73198806 Score: 109
Period size: 26 Copynumber: 2.9 Consensus size: 26
73198721 TAATTTTGTA
*
73198731 AATCGAGGGTACTTT-GGTAATTTTAC
1 AATCGAGGGTA-TTTCAGTAATTTTAC
73198757 AAGTCGAGGGTATTTCAGTAATTTTAC
1 AA-TCGAGGGTATTTCAGTAATTTTAC
*
73198784 AATCGACGGTATTTCAGTAATTT
1 AATCGAGGGTATTTCAGTAATTT
73198807 GATATTTGGG
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
26 25 0.54
27 21 0.46
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (26 bp):
AATCGAGGGTATTTCAGTAATTTTAC
Found at i:73201779 original size:6 final size:6
Alignment explanation
Indices: 73201770--73201834 Score: 55
Period size: 6 Copynumber: 11.0 Consensus size: 6
73201760 TGGCCCATTG
* * *
73201770 CAGTAA CAGTAAA CAGT-A CAGTAA CAGTAA CAGT-G CAGTAG TAGTAAA
1 CAGTAA CAGT-AA CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGT-AA
*
73201818 CAGT-A CAGTAA TAGTAA
1 CAGTAA CAGTAA CAGTAA
73201835 ATAGTATGCA
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
5 14 0.29
6 25 0.51
7 10 0.20
ACGTcount: A:0.46, C:0.14, G:0.20, T:0.20
Consensus pattern (6 bp):
CAGTAA
Found at i:73201793 original size:18 final size:18
Alignment explanation
Indices: 73201770--73201840 Score: 90
Period size: 18 Copynumber: 4.0 Consensus size: 18
73201760 TGGCCCATTG
73201770 CAGTAACAGTAAACAGTA
1 CAGTAACAGTAAACAGTA
*
73201788 CAGTAACAGT-AACAGTG
1 CAGTAACAGTAAACAGTA
**
73201805 CAGTAGTAGTAAACAGTA
1 CAGTAACAGTAAACAGTA
* *
73201823 CAGTAATAGTAAATAGTA
1 CAGTAACAGTAAACAGTA
73201841 TGCAAGTCCT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
17 14 0.30
18 32 0.70
ACGTcount: A:0.46, C:0.13, G:0.20, T:0.21
Consensus pattern (18 bp):
CAGTAACAGTAAACAGTA
Found at i:73201807 original size:35 final size:35
Alignment explanation
Indices: 73201768--73201834 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
73201758 CTTGGCCCAT
73201768 TGCAGTAACAGTAAACAGTACAGTAACAGTAACAG
1 TGCAGTAACAGTAAACAGTACAGTAACAGTAACAG
** *
73201803 TGCAGTAGTAGTAAACAGTACAGTAATAGTAA
1 TGCAGTAACAGTAAACAGTACAGTAACAGTAA
73201835 ATAGTATGCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.45, C:0.13, G:0.21, T:0.21
Consensus pattern (35 bp):
TGCAGTAACAGTAAACAGTACAGTAACAGTAACAG
Found at i:73202221 original size:27 final size:26
Alignment explanation
Indices: 73202180--73202362 Score: 204
Period size: 27 Copynumber: 6.8 Consensus size: 26
73202170 TCTTACCACA
73202180 AAGGGCAAAACAGTCATTTTACCATAT
1 AAGGGCAAAACAGTCATTTTACC-TAT
*
73202207 AAGGGCAAAATAGTCATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCT-AT
* * * *
73202234 AAGTGCAAAAAAATTATTTTACCTTAT
1 AAGGGCAAAACAGTCATTTTACC-TAT
*
73202261 AAGGGCAAAACAATCATTTTACCCTAT
1 AAGGGCAAAACAGTCATTTTA-CCTAT
*
73202288 AAAGGCAAAACAGTCATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCT-AT
* * *
73202315 AAGGGAAAAATAGTCATTTTACCCCAT
1 AAGGGCAAAACAGTCATTTTA-CCTAT
* *
73202342 AAGGGAAAAACAATCATTTTA
1 AAGGGCAAAACAGTCATTTTA
73202363 ACAATTTGGG
Statistics
Matches: 135, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
26 4 0.03
27 126 0.93
28 5 0.04
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (26 bp):
AAGGGCAAAACAGTCATTTTACCTAT
Found at i:73202279 original size:81 final size:81
Alignment explanation
Indices: 73202160--73202362 Score: 266
Period size: 81 Copynumber: 2.5 Consensus size: 81
73202150 CACATAGGGT
* * * * * *
73202160 AAAACAATCATCTTACCACA-AAGGGCAAAACAGTCATTTTACCATATAAGGGCAAAATAGTCAT
1 AAAATAATCATTTTACCCCATAAGGGCAAAACAATCATTTTACCATATAAAGGCAAAACAGTCAT
73202224 TTTACCTCATAAGTGCA
66 TTTACCTCATAAG-GCA
* ** *
73202241 AAAA-AATTATTTTACCTTATAAGGGCAAAACAATCATTTTACCCTATAAAGGCAAAACAGTCAT
1 AAAATAATCATTTTACCCCATAAGGGCAAAACAATCATTTTACCATATAAAGGCAAAACAGTCAT
*
73202305 TTTACCTCATAAGGGA
66 TTTACCTCATAAGGCA
* *
73202321 AAAATAGTCATTTTACCCCATAAGGGAAAAACAATCATTTTA
1 AAAATAATCATTTTACCCCATAAGGGCAAAACAATCATTTTA
73202363 ACAATTTGGG
Statistics
Matches: 106, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
80 17 0.16
81 89 0.84
ACGTcount: A:0.43, C:0.19, G:0.11, T:0.27
Consensus pattern (81 bp):
AAAATAATCATTTTACCCCATAAGGGCAAAACAATCATTTTACCATATAAAGGCAAAACAGTCAT
TTTACCTCATAAGGCA
Found at i:73206086 original size:27 final size:27
Alignment explanation
Indices: 73206056--73206274 Score: 149
Period size: 27 Copynumber: 8.1 Consensus size: 27
73206046 AACAGTTATC
* *
73206056 TTACCATAAACGGGCAAAAAAATCATT
1 TTACCATAAAAGGGCAAAACAATCATT
* * * * * *
73206083 TTACCACATAGGGGTAAAATAGTCATT
1 TTACCATAAAAGGGCAAAACAATCATT
*
73206110 TTACCATAAAAGGGCAAAAAAATCATT
1 TTACCATAAAAGGGCAAAACAATCATT
* * * * *
73206137 TTACCACATAGGGGTAAAACAATCATC
1 TTACCATAAAAGGGCAAAACAATCATT
* **
73206164 TTACCATAAAAAGGCAAAACGGTCATT
1 TTACCATAAAAGGGCAAAACAATCATT
*
73206191 TTACCCCAT-AAA-GGCAAAACAACCATT
1 TTA--CCATAAAAGGGCAAAACAATCATT
*
73206218 TTACC-TCATAAGGGCAAAACAGA-CATT
1 TTACCAT-AAAAGGGCAAAACA-ATCATT
* ** * * *
73206245 ATACCCCATAAGGGAAAAACAGTCATT
1 TTACCATAAAAGGGCAAAACAATCATT
73206272 TTA
1 TTA
73206275 ACAGTTTAGG
Statistics
Matches: 149, Mismatches: 35, Indels: 16
0.75 0.17 0.08
Matches are distributed among these distances:
24 1 0.01
25 2 0.01
26 2 0.01
27 136 0.91
28 4 0.03
29 4 0.03
ACGTcount: A:0.44, C:0.20, G:0.13, T:0.23
Consensus pattern (27 bp):
TTACCATAAAAGGGCAAAACAATCATT
Found at i:73206099 original size:54 final size:54
Alignment explanation
Indices: 73206033--73206270 Score: 237
Period size: 54 Copynumber: 4.4 Consensus size: 54
73206023 AAACATATAT
* * *
73206033 CACATAGCGGTAAAACAGTTATCTTACCATAAACGGGCAAAAAAATCATTTTAC
1 CACATAGGGGTAAAACAGTCATCTTACCATAAAAGGGCAAAAAAATCATTTTAC
* *
73206087 CACATAGGGGTAAAATAGTCATTTTACCATAAAAGGGCAAAAAAATCATTTTAC
1 CACATAGGGGTAAAACAGTCATCTTACCATAAAAGGGCAAAAAAATCATTTTAC
* * ***
73206141 CACATAGGGGTAAAACAATCATCTTACCATAAAAAGGCAAAACGGTCATTTTAC
1 CACATAGGGGTAAAACAGTCATCTTACCATAAAAGGGCAAAAAAATCATTTTAC
* ** * ** * * * *
73206195 CCCATAAAGGCAAAACAACCATTTTACC-TCATAAGGGCAAAACAGA-CATTATAC
1 CACATAGGGGTAAAACAGTCATCTTACCAT-AAAAGGGCAAAA-AAATCATTTTAC
* * *
73206249 CCCATAAGGGAAAAACAGTCAT
1 CACATAGGGGTAAAACAGTCAT
73206271 TTTAACAGTT
Statistics
Matches: 155, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
53 1 0.01
54 153 0.99
55 1 0.01
ACGTcount: A:0.44, C:0.21, G:0.14, T:0.22
Consensus pattern (54 bp):
CACATAGGGGTAAAACAGTCATCTTACCATAAAAGGGCAAAAAAATCATTTTAC
Found at i:73208902 original size:45 final size:45
Alignment explanation
Indices: 73208796--73208921 Score: 159
Period size: 45 Copynumber: 2.8 Consensus size: 45
73208786 CACTAGGAAT
73208796 TAAGAAATCTGAACTTATTGAGTTGGT-CGAGTTCATGATATATG
1 TAAGAAATCTGAACTTATTGAGTTGGTCCGAGTTCATGATATATG
* * *
73208840 TAAGAAATCCGAACTTATTGACTTGGTCCAAGTTCAT-AGTATATG
1 TAAGAAATCTGAACTTATTGAGTTGGTCCGAGTTCATGA-TATATG
* * *
73208885 TGAAG-CATCTGAGCTTATTAAGTTGGTCCGAGTTCAT
1 T-AAGAAATCTGAACTTATTGAGTTGGTCCGAGTTCAT
73208922 TATGGATACA
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
44 26 0.37
45 41 0.59
46 3 0.04
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.35
Consensus pattern (45 bp):
TAAGAAATCTGAACTTATTGAGTTGGTCCGAGTTCATGATATATG
Found at i:73213292 original size:22 final size:22
Alignment explanation
Indices: 73213264--73213309 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
73213254 TTTTGAGTAA
73213264 AGGACAGATAGTCTGAATGAAG
1 AGGACAGATAGTCTGAATGAAG
73213286 AGGACAGATAGTCTGAATGAAG
1 AGGACAGATAGTCTGAATGAAG
73213308 AG
1 AG
73213310 TGTATATATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.41, C:0.09, G:0.33, T:0.17
Consensus pattern (22 bp):
AGGACAGATAGTCTGAATGAAG
Found at i:73215559 original size:45 final size:45
Alignment explanation
Indices: 73215495--73215619 Score: 146
Period size: 45 Copynumber: 2.8 Consensus size: 45
73215485 CTAGGAATTA
* * *
73215495 AGAAATCCGAACTTGTTGAGTTGGTCCGAGTTCGT-GATATATGTG
1 AGAAATCCAAACTTGTTGAGTTGGTCCAAGTTCATAG-TATATGTG
*
73215540 AGAAATCTAAACTTGTTGAGTTGGTCCAAGTTCATAGTATATGTG
1 AGAAATCCAAACTTGTTGAGTTGGTCCAAGTTCATAGTATATGTG
* * * *
73215585 A-AGCATCCGAGCTCGTTGAGTTGGTCCAAGTTCAT
1 AGA-AATCCAAACTTGTTGAGTTGGTCCAAGTTCAT
73215620 TATGGATGCA
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
44 1 0.01
45 67 0.97
46 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (45 bp):
AGAAATCCAAACTTGTTGAGTTGGTCCAAGTTCATAGTATATGTG
Found at i:73219127 original size:33 final size:33
Alignment explanation
Indices: 73219089--73219174 Score: 172
Period size: 33 Copynumber: 2.6 Consensus size: 33
73219079 CTAAGCTTCT
73219089 GTGTAAGGATGTACCATTTGTCTGGATTGATGC
1 GTGTAAGGATGTACCATTTGTCTGGATTGATGC
73219122 GTGTAAGGATGTACCATTTGTCTGGATTGATGC
1 GTGTAAGGATGTACCATTTGTCTGGATTGATGC
73219155 GTGTAAGGATGTACCATTTG
1 GTGTAAGGATGTACCATTTG
73219175 AGAAACTCAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.22, C:0.12, G:0.30, T:0.36
Consensus pattern (33 bp):
GTGTAAGGATGTACCATTTGTCTGGATTGATGC
Found at i:73233960 original size:18 final size:18
Alignment explanation
Indices: 73233937--73233974 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
73233927 AGGCTTGGCT
73233937 AATAAGGAAATTCGATAA
1 AATAAGGAAATTCGATAA
73233955 AATAAGGAAATTCGATAA
1 AATAAGGAAATTCGATAA
73233973 AA
1 AA
73233975 ATCAACTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.58, C:0.05, G:0.16, T:0.21
Consensus pattern (18 bp):
AATAAGGAAATTCGATAA
Found at i:73237585 original size:41 final size:41
Alignment explanation
Indices: 73237540--73237657 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
73237530 TGAAAGATAA
73237540 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
73237581 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
73237611 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
73237652 ATGTAG
1 ATGTAG
73237658 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:73237596 original size:71 final size:71
Alignment explanation
Indices: 73237508--73237671 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
73237498 GAGATGTATC
73237508 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73237573 AGGACA
66 AGGACA
73237579 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73237644 AGGACA
66 AGGACA
73237650 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
73237672 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:73242458 original size:45 final size:45
Alignment explanation
Indices: 73242408--73242579 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
73242398 ATTTGGGCAT
73242408 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *** * *
73242453 TCGAACTCGTTGAGTTGAGT-CGAGTTCGAGAGATGTAACTAG-GCAT-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* *
73242499 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
73242544 CCCGAGCTCGTTAAGTTGAGTCC-AGTTCACTTATGG
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73242580 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 1 0.01
44 10 0.10
45 37 0.36
46 44 0.42
47 11 0.11
48 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:73245530 original size:15 final size:15
Alignment explanation
Indices: 73245486--73245560 Score: 69
Period size: 15 Copynumber: 5.0 Consensus size: 15
73245476 GTATCGTATC
* *
73245486 TTGGGTTTCTTTATC
1 TTGGATTTCTTTATT
* *
73245501 CTGGATATCTTTATT
1 TTGGATTTCTTTATT
73245516 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
** * * *
73245531 CCGGGTTTCTCTATC
1 TTGGATTTCTTTATT
73245546 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
73245561 CGGTTTTCTT
Statistics
Matches: 44, Mismatches: 16, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
15 44 1.00
ACGTcount: A:0.12, C:0.15, G:0.16, T:0.57
Consensus pattern (15 bp):
TTGGATTTCTTTATT
Found at i:73245560 original size:30 final size:30
Alignment explanation
Indices: 73245482--73245569 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
73245472 CATAGTATCG
* * *
73245482 TATCTTGGGTTTCTTTA-TCCTGGATATCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
* *
73245512 TATTTTGGATTTCTTTATTCCGGGTTTCTC
1 TATCTTGGATTTCTTTATTCCGGATTTCTC
*
73245542 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
73245570 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
29 8 0.16
30 39 0.78
31 3 0.06
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:73245570 original size:14 final size:14
Alignment explanation
Indices: 73245491--73245570 Score: 61
Period size: 15 Copynumber: 5.4 Consensus size: 14
73245481 GTATCTTGGG
*
73245491 TTTCTTTATCCTGGA
1 TTTCTTTATTC-GGA
* *
73245506 TATCTTTATTTTGGA
1 TTTCTTTA-TTCGGA
*
73245521 TTTCTTTATTCCGGG
1 TTTCTTTATT-CGGA
* *
73245536 TTTCTCTATCTTGGA
1 TTTCTTTAT-TCGGA
*
73245551 TTTCTTTATTCGGT
1 TTTCTTTATTCGGA
73245565 TTTCTT
1 TTTCTT
73245571 GTTATCTTTG
Statistics
Matches: 50, Mismatches: 12, Indels: 7
0.72 0.17 0.10
Matches are distributed among these distances:
14 11 0.22
15 37 0.74
16 2 0.04
ACGTcount: A:0.11, C:0.16, G:0.14, T:0.59
Consensus pattern (14 bp):
TTTCTTTATTCGGA
Found at i:73248103 original size:46 final size:46
Alignment explanation
Indices: 73247944--73248117 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
73247934 ATTTGGGCAT
*
73247944 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *** * * * *
73247989 TCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-AC-TAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAACGC
*
73248034 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
73248082 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73248118 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
44 2 0.02
45 28 0.26
46 46 0.43
47 27 0.25
48 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:73259620 original size:61 final size:62
Alignment explanation
Indices: 73259524--73259656 Score: 196
Period size: 61 Copynumber: 2.2 Consensus size: 62
73259514 GTGACGACAC
* * *
73259524 GGCCGTGTGAACAACAAAAGCCAGGTCGTGCGCGAGACACGGTCGAGTGATGGCCAGAGAGT
1 GGCCGTGTGAACAACAAAAGCCAGGTCGTGCGCGAGACACAGCCGAGTGATAGCCAGAGAGT
* * *
73259586 GGCCGTGTGAACAA-AAAGGCCAGGTCGTGCGCGAGACACAGCCGTGTGATAGCCAGAGTGT
1 GGCCGTGTGAACAACAAAAGCCAGGTCGTGCGCGAGACACAGCCGAGTGATAGCCAGAGAGT
*
73259647 GGGCGTGTGA
1 GGCCGTGTGA
73259657 GCCACACGGG
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
61 50 0.78
62 14 0.22
ACGTcount: A:0.26, C:0.22, G:0.38, T:0.14
Consensus pattern (62 bp):
GGCCGTGTGAACAACAAAAGCCAGGTCGTGCGCGAGACACAGCCGAGTGATAGCCAGAGAGT
Found at i:73261593 original size:19 final size:20
Alignment explanation
Indices: 73261569--73261606 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
73261559 GGTACCACCA
73261569 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
73261588 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
73261607 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:73269102 original size:19 final size:20
Alignment explanation
Indices: 73269078--73269115 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
73269068 GGTACCACCA
73269078 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
73269097 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
73269116 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:73269455 original size:93 final size:93
Alignment explanation
Indices: 73269345--73269515 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
73269335 GCCCCTAAGT
* *
73269345 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
73269410 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
73269438 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
73269503 CGAGTTCGGATGC
66 CGAGTTCGGATGC
73269516 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:73269512 original size:46 final size:46
Alignment explanation
Indices: 73269340--73269512 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
73269330 AACCCGCCCC
* * * *
73269340 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
73269386 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
73269434 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
73269479 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73269513 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:73272419 original size:68 final size:67
Alignment explanation
Indices: 73272347--73272496 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
73272337 CATCATGTGT
* * * *
73272347 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
73272409 ATGTAG
62 ATGTAG
** * *
73272415 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
73272480 AG
66 AG
73272482 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
73272497 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:73272452 original size:64 final size:64
Alignment explanation
Indices: 73272371--73272554 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
73272361 AGACATTATG
* *
73272371 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
73272435 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
73272500 AA
63 AA
* * * *
73272502 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
73272555 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:73275360 original size:30 final size:31
Alignment explanation
Indices: 73275324--73275386 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
73275314 ACTTATTTTA
73275324 TTGTTAA-TTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTTGTTATTATTTTAAAGACAT
* *
73275354 TTGTTAATTTTTTTTATTATTTTAGAGACAT
1 TTGTTAATTTTTGTTATTATTTTAAAGACAT
73275385 TT
1 TT
73275387 ACTTGTTAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.27, C:0.03, G:0.10, T:0.60
Consensus pattern (31 bp):
TTGTTAATTTTTGTTATTATTTTAAAGACAT
Found at i:73275493 original size:18 final size:18
Alignment explanation
Indices: 73275470--73275509 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
73275460 GAAATATTTA
*
73275470 TTTTGATGT-TTTTAGTAT
1 TTTTGATGTATTATA-TAT
73275488 TTTTGATGTATTATATAT
1 TTTTGATGTATTATATAT
73275506 TTTT
1 TTTT
73275510 TTAAATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (18 bp):
TTTTGATGTATTATATAT
Found at i:73275541 original size:12 final size:12
Alignment explanation
Indices: 73275512--73275543 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
73275502 ATATTTTTTT
73275512 AAATT-ATATAA
1 AAATTAATATAA
73275523 AAA-TAATATAA
1 AAATTAATATAA
73275534 AAATTAATAT
1 AAATTAATAT
73275544 GGGTGGGCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 1 0.05
11 12 0.63
12 6 0.32
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (12 bp):
AAATTAATATAA
Found at i:73279061 original size:62 final size:62
Alignment explanation
Indices: 73278956--73279240 Score: 310
Period size: 62 Copynumber: 4.6 Consensus size: 62
73278946 GTGCGGGGTT
* * * * *
73278956 CACACGGCTAAGGACACGGGCGTATG-CCAGGCCATGTAACTCACTGTTTGTGCTTAAAAAC
1 CACACGGCCAAGGACACAGGCATGTGCCCAAGCCATGTAACTCACTGTTTGTGCTTAAAAAC
*
73279017 CACACGGCCAGGGACACAGGCATGTGCCCAAGCCATGTAACTCACTGTTTGTGCTTAAAAA-
1 CACACGGCCAAGGACACAGGCATGTGCCCAAGCCATGTAACTCACTGTTTGTGCTTAAAAAC
* * * *
73279078 C-CATGGCCAAGGACACGGGCATGTTCCC-AGTCCGTGTAACTCACTGTTTGTGCTTAAAAAC
1 CACACGGCCAAGGACACAGGCATGTGCCCAAG-CCATGTAACTCACTGTTTGTGCTTAAAAAC
* * ** * * * * *
73279139 CACATGGCTAAGGACACAAACATGTGCTCAGGTCACGTAACTCACTATTTGTGCTTAAAAAC
1 CACACGGCCAAGGACACAGGCATGTGCCCAAGCCATGTAACTCACTGTTTGTGCTTAAAAAC
* * *
73279201 CACACTGCCAAGGCACACGGGCGTGTG-CCAAGGCCATGTA
1 CACACGGCCAAGG-ACACAGGCATGTGCCCAA-GCCATGTA
73279241 GTAGGATATT
Statistics
Matches: 184, Mismatches: 33, Indels: 12
0.80 0.14 0.05
Matches are distributed among these distances:
59 2 0.01
60 51 0.28
61 23 0.12
62 92 0.50
63 16 0.09
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.21
Consensus pattern (62 bp):
CACACGGCCAAGGACACAGGCATGTGCCCAAGCCATGTAACTCACTGTTTGTGCTTAAAAAC
Found at i:73279140 original size:122 final size:121
Alignment explanation
Indices: 73278965--73279240 Score: 340
Period size: 122 Copynumber: 2.2 Consensus size: 121
73278955 TCACACGGCT
* *
73278965 AAGGACACGGGCGTATGCCAGGCCATGTAACTCACTGTTTGTGCTTAAAAACCACACGGCCAGGG
1 AAGGACACGGGCGTATCCCAGGCCATGTAACTCACTGTTTGTGCTTAAAAACCACACGGCCAAGG
** * *
73279030 ACACAGGCATGTGCCCAAGCCATGTAACTCACTGTTTGTGCTTAAAAACCATGGCC
66 ACACAAACATGTGCCCAAGCCACGTAACTCACTATTTGTGCTTAAAAACCATGGCC
* * * *
73279086 AAGGACACGGGCATGT-TCCCAGTCCGTGTAACTCACTGTTTGTGCTTAAAAACCACATGGCTAA
1 AAGGACACGGGC--GTATCCCAGGCCATGTAACTCACTGTTTGTGCTTAAAAACCACACGGCCAA
* * *
73279150 GGACACAAACATGTGCTCAGGTCACGTAACTCACTATTTGTGCTTAAAAACCACACT-GCC
64 GGACACAAACATGTGCCCAAGCCACGTAACTCACTATTTGTGCTTAAAAA-C-CA-TGGCC
* *
73279210 AAGGCACACGGGCGTGTGCCAAGGCCATGTA
1 AAGG-ACACGGGCGTAT-CCCAGGCCATGTA
73279241 GTAGGATATT
Statistics
Matches: 131, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
121 12 0.09
122 85 0.65
123 5 0.04
124 10 0.08
125 19 0.15
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (121 bp):
AAGGACACGGGCGTATCCCAGGCCATGTAACTCACTGTTTGTGCTTAAAAACCACACGGCCAAGG
ACACAAACATGTGCCCAAGCCACGTAACTCACTATTTGTGCTTAAAAACCATGGCC
Found at i:73281140 original size:46 final size:46
Alignment explanation
Indices: 73281069--73281185 Score: 139
Period size: 46 Copynumber: 2.5 Consensus size: 46
73281059 GTGTCGATGC
* *
73281069 CATGTCCCAGATATAGTCTTACACTGAC-TATCATCTC-ATAGCCGACG
1 CATGTCCCAGACAT-GTCTTACACTGACTTA-CATCTCGAGA-CCGACG
* *
73281116 CATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGACCGATG
1 CATGTCCCAGACATGTCTTACACTGACTTACATCTCGAGACCGACG
* *
73281162 CATGTCCAAGACATGTATTACACT
1 CATGTCCCAGACATGTCTTACACT
73281186 AGCACTCCTC
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
46 45 0.73
47 17 0.27
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGACTTACATCTCGAGACCGACG
Found at i:73283646 original size:52 final size:53
Alignment explanation
Indices: 73283473--73283675 Score: 140
Period size: 54 Copynumber: 3.8 Consensus size: 53
73283463 AGGGTTTAAG
* * * * * * * *
73283473 GATACCAAGTAAGACCATACCAA-AGCATGGCATTGTTAAGTTTTACAAGGCAAG
1 GATACCACGTAAGACCATGCCAAGA-CATGGAAATGGTAAG-TTCATAAGGCAAA
* * * * * * * * *
73283527 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTATGATAAGGCAAA
1 GATACCACGTAAGACCATGCCAAGACATGGAAATGGT-AAGT-TCATAAGGCAAA
* * * * * *
73283582 GATCCCATGTAAGACCATGCCAAG-GATGGCAATGGTGAGTTCATAAGGCAAG
1 GATACCACGTAAGACCATGCCAAGACATGGAAATGGTAAGTTCATAAGGCAAA
*
73283634 GATACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 GATACCACGTAAGACCATGCCAAGACATGGAAATGGTAAGTT
73283676 TAAAAAGGAA
Statistics
Matches: 118, Mismatches: 27, Indels: 9
0.77 0.18 0.06
Matches are distributed among these distances:
52 31 0.26
53 16 0.14
54 39 0.33
55 32 0.27
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (53 bp):
GATACCACGTAAGACCATGCCAAGACATGGAAATGGTAAGTTCATAAGGCAAA
Found at i:73288793 original size:193 final size:193
Alignment explanation
Indices: 73288464--73288850 Score: 738
Period size: 193 Copynumber: 2.0 Consensus size: 193
73288454 TTCATACGAG
73288464 GTACCAATTCCATACAAATATAGGAGTGGGTCAACCCTGGGTCAATTAAAGTAACAACAAAATTT
1 GTACCAATTCCATACAAATATAGGAGTGGGTCAACCCTGGGTCAATTAAAGTAACAACAAAATTT
73288529 CATGGATAGGAAAGGTACTCGTAATCACGTCGGGAGACTCTGCCTCTTCACAGGCACGAATAGCG
66 CATGGATAGGAAAGGTACTCGTAATCACGTCGGGAGACTCTGCCTCTTCACAGGCACGAATAGCG
*
73288594 TAAGTCCTTGCAAGCGCTCTACCCTCAGACCTTACTGCAGCATCTCTGGGTGCACCTCTTCTA
131 TAAGTCCTTGCAAGCGCTCTACCCTCAGACCTTACTACAGCATCTCTGGGTGCACCTCTTCTA
73288657 GTACCAATTCCATACAAATATAGGAGTGGGTCAACCCTGGGTCAATTAAAGTAACAACAAAATTT
1 GTACCAATTCCATACAAATATAGGAGTGGGTCAACCCTGGGTCAATTAAAGTAACAACAAAATTT
*
73288722 CATGGATAGGAAAGGTACTCGTAATCATGTCGGGAGACTCTGCCTCTTCACAGGCACGAATAGCG
66 CATGGATAGGAAAGGTACTCGTAATCACGTCGGGAGACTCTGCCTCTTCACAGGCACGAATAGCG
* *
73288787 TAAGTCCTTGCAAGCGCTCTACCCTCGGACCTTACTACAGCATCTCTGGGTGTACCTCTTCTA
131 TAAGTCCTTGCAAGCGCTCTACCCTCAGACCTTACTACAGCATCTCTGGGTGCACCTCTTCTA
73288850 G
1 G
73288851 AAGCCCCGCT
Statistics
Matches: 190, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
193 190 1.00
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (193 bp):
GTACCAATTCCATACAAATATAGGAGTGGGTCAACCCTGGGTCAATTAAAGTAACAACAAAATTT
CATGGATAGGAAAGGTACTCGTAATCACGTCGGGAGACTCTGCCTCTTCACAGGCACGAATAGCG
TAAGTCCTTGCAAGCGCTCTACCCTCAGACCTTACTACAGCATCTCTGGGTGCACCTCTTCTA
Found at i:73293777 original size:257 final size:257
Alignment explanation
Indices: 73293319--73293803 Score: 718
Period size: 257 Copynumber: 1.9 Consensus size: 257
73293309 TTAGTAACTG
** * * * * *
73293319 AACTAATATAAAAATGCTAAAACATTAGGGAACGATCGAGCCTTCGACGCTGACCTAGTAAGTAT
1 AACTAATATAAAAACACTAAAACATTAGGGAACGACCAAGCCTCCAACGCTGACCCAGTAAGTAT
* * *
73293384 TTTTGTTCTGTTGTAAATATTATGATACCTAACTGTTATTAGTAGATTGCTTGGTGTGAACTAGT
66 TTTTCTTCTGTTGTAAAGATTATGATACCTAACTGTTATTAGTAGATTACTTGGTGTGAACTAGT
* * * * *
73293449 GGAACCGTTTGCTAGATGTGTGAACTGATCTGTGTACTCTGAAATTGTAGCTAGATTGCAATATG
131 GAAACCGTTTGCTAGATATGTAAACTGATCTGTGTACTCTGAAATTATAGCTAGATTGCAATATA
* *
73293514 AGTTCGCATGGTAGTCTTGGATAAGGTATGCGGGGGCTTCGAAGATGCTGGAGAGGAGCTCA
196 AGTTCGCATGGTAGTCATGGACAAGGTATGCGGGGGCTTCGAAGATGCTGGAGAGGAGCTCA
* * *
73293576 AACTAATATAGAAACACTGAAACATTAGGGAATGACCAAGCCTCCAACGCTGACCCAGTAAGTAT
1 AACTAATATAAAAACACTAAAACATTAGGGAACGACCAAGCCTCCAACGCTGACCCAGTAAGTAT
* * * *
73293641 TTTTCTTTTGTTGTAAAGATTATGGTACCTAACTGTTATTGGTAGATTACTTGGTGTGAACTGGT
66 TTTTCTTCTGTTGTAAAGATTATGATACCTAACTGTTATTAGTAGATTACTTGGTGTGAACTAGT
* *
73293706 GAAACCGTTTGCTGGATATGTAAACTGATCTGTGTACTTTGAAATTATAGCTAGATTGCAATATA
131 GAAACCGTTTGCTAGATATGTAAACTGATCTGTGTACTCTGAAATTATAGCTAGATTGCAATATA
* *
73293771 AGTTCGCATTGTAGTCATGGACGAGGTATGCGG
196 AGTTCGCATGGTAGTCATGGACAAGGTATGCGG
73293804 AGGTGTCGAG
Statistics
Matches: 200, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
257 200 1.00
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.32
Consensus pattern (257 bp):
AACTAATATAAAAACACTAAAACATTAGGGAACGACCAAGCCTCCAACGCTGACCCAGTAAGTAT
TTTTCTTCTGTTGTAAAGATTATGATACCTAACTGTTATTAGTAGATTACTTGGTGTGAACTAGT
GAAACCGTTTGCTAGATATGTAAACTGATCTGTGTACTCTGAAATTATAGCTAGATTGCAATATA
AGTTCGCATGGTAGTCATGGACAAGGTATGCGGGGGCTTCGAAGATGCTGGAGAGGAGCTCA
Found at i:73299180 original size:40 final size:40
Alignment explanation
Indices: 73299135--73299302 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
73299125 CGGAATATAA
73299135 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
73299175 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
73299215 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
73299255 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
73299295 CCGGATAT
1 CCGGATAT
73299303 TATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73302634 original size:49 final size:49
Alignment explanation
Indices: 73302578--73302939 Score: 616
Period size: 49 Copynumber: 7.4 Consensus size: 49
73302568 TACATATATG
* * * * *
73302578 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGCATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* * *
73302627 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGGGATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
73302676 TGTGATGAGGCCTAACGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
73302725 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
73302774 TGTGATAAGGCCTAACGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
73302823 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
73302872 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
73302921 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
73302940 TAATGTAAAA
Statistics
Matches: 298, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 298 1.00
ACGTcount: A:0.29, C:0.10, G:0.33, T:0.28
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:73303098 original size:37 final size:37
Alignment explanation
Indices: 73303048--73303162 Score: 203
Period size: 37 Copynumber: 3.1 Consensus size: 37
73303038 GTTCCGAGTG
73303048 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
*
73303085 AGACCTGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
* *
73303122 AGACCCGATGACTACGTATGGAGATTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
73303159 AGAC
1 AGAC
73303163 TTCTTTTATA
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 74 1.00
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
Found at i:73306763 original size:261 final size:261
Alignment explanation
Indices: 73306299--73306819 Score: 979
Period size: 261 Copynumber: 2.0 Consensus size: 261
73306289 TAAGTAATCG
73306299 TTATTGATTTTCTGTAAGTTTTGGTTTCGTTGAATGTTGATGTCGAATTTTTCGACGTAGGTACT
1 TTATTGATTTTCTGTAAGTTTTGGTTTCGTTGAATGTTGATGTCGAATTTTTCGACGTAGGTACT
*
73306364 TTGAGTATAATTGTGCATTGCTGTTGATAAACTTGATTGATTGAGTTATTGAATGATCGTTTTAG
66 TTGAGTATAATTGTACATTGCTGTTGATAAACTTGATTGATTGAGTTATTGAATGATCGTTTTAG
* *
73306429 GCTTTAGAACTTCTATTCATTATCACTACTTTGAAATCGTTATAGGTGCGTATCGAAAACCTTGG
131 GCTTCAGAACTTCTATTCATTATCACTACTTTGAAATCGTTATAGGTGCGTATCGAAAACCTTCG
*
73306494 ATTTTGCAAGTTTTGTTGTCGAAAATAGTGGTTGTCAACCTCATATGGCCAGGCGCCGTGTGAAC
196 ATTTTGCAAGTTTTGTTGTCAAAAATAGTGGTTGTCAACCTCATATGGCCAGGCGCCGTGTGAAC
73306559 A
261 A
73306560 TTATTGATTTTCTGTAAGTTTTGGTTTCGTTGAATGTTGATGTCGAATTTTTCGACGTAGGTACT
1 TTATTGATTTTCTGTAAGTTTTGGTTTCGTTGAATGTTGATGTCGAATTTTTCGACGTAGGTACT
*
73306625 TTGAGTATAATTGTACATTGTTGTTGATAAACTTGATTGATTGAGTTATTGAATGATCGTTTTAG
66 TTGAGTATAATTGTACATTGCTGTTGATAAACTTGATTGATTGAGTTATTGAATGATCGTTTTAG
73306690 GCTTCAGAACTTCTATTCATTATCACTACTTTGAAATCGTTATAGGTGCGTATCGAAAACCTTCG
131 GCTTCAGAACTTCTATTCATTATCACTACTTTGAAATCGTTATAGGTGCGTATCGAAAACCTTCG
**
73306755 ATTTTGCAAGTTTTGTTGTCAAAAATAGTGGTTGTCAACCTCATATGGCCAGGCGTTGTGTGAAC
196 ATTTTGCAAGTTTTGTTGTCAAAAATAGTGGTTGTCAACCTCATATGGCCAGGCGCCGTGTGAAC
73306820 GGGCATGTAA
Statistics
Matches: 253, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
261 253 1.00
ACGTcount: A:0.24, C:0.13, G:0.22, T:0.41
Consensus pattern (261 bp):
TTATTGATTTTCTGTAAGTTTTGGTTTCGTTGAATGTTGATGTCGAATTTTTCGACGTAGGTACT
TTGAGTATAATTGTACATTGCTGTTGATAAACTTGATTGATTGAGTTATTGAATGATCGTTTTAG
GCTTCAGAACTTCTATTCATTATCACTACTTTGAAATCGTTATAGGTGCGTATCGAAAACCTTCG
ATTTTGCAAGTTTTGTTGTCAAAAATAGTGGTTGTCAACCTCATATGGCCAGGCGCCGTGTGAAC
A
Found at i:73316040 original size:49 final size:49
Alignment explanation
Indices: 73315914--73316148 Score: 336
Period size: 49 Copynumber: 4.9 Consensus size: 49
73315904 CCCTTCGGGA
* * * *
73315914 CTTATCACAT-T-TATACACTTCCACATCCATCACTTTGGCCACTCA-GC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCA-TCAGGC
* * *
73315961 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATCAGGC
* *
73316008 CTTATCATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATCAGGC
73316057 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATCAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATCAGGC
*
73316106 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCA
73316149 CATTCATCAC
Statistics
Matches: 172, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
46 3 0.02
47 42 0.24
49 127 0.74
ACGTcount: A:0.30, C:0.31, G:0.07, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATCAGGC
Found at i:73316150 original size:18 final size:18
Alignment explanation
Indices: 73316129--73316166 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
73316119 TACACACTTT
73316129 CACATTCATCACATCGGC
1 CACATTCATCACATCGGC
73316147 CACATTCATCACATCGGC
1 CACATTCATCACATCGGC
73316165 CA
1 CA
73316167 TTAGGCCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.39, G:0.11, T:0.21
Consensus pattern (18 bp):
CACATTCATCACATCGGC
Found at i:73316156 original size:67 final size:67
Alignment explanation
Indices: 73316080--73316215 Score: 254
Period size: 67 Copynumber: 2.0 Consensus size: 67
73316070 TATACACTTT
73316080 CACATTCATCACATCGGCCATCAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
1 CACATTCATCACATCGGCCATCAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
73316145 GC
66 GC
* *
73316147 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
1 CACATTCATCACATCGGCCATCAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
73316212 GC
66 GC
73316214 CA
1 CA
73316216 TTAGGCCTTA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.30, C:0.33, G:0.09, T:0.28
Consensus pattern (67 bp):
CACATTCATCACATCGGCCATCAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
GC
Found at i:73316240 original size:116 final size:116
Alignment explanation
Indices: 73316031--73316264 Score: 450
Period size: 116 Copynumber: 2.0 Consensus size: 116
73316021 TATACACTTT
73316031 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
1 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
73316096 GCCATCAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGC
66 GCCATCAGGCCTTATCACATATACACACACTTTCACATTCATCACATCGGC
73316147 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
1 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
73316212 GCCATTAGGCCTTATCACATATACACACACTTTCACATTCATCACATCGGC
66 GCCATCAGGCCTTATCACATATACACACACTTTCACATTCATCACATCGGC
73316263 CA
1 CA
73316265 TTAGGCCTTA
Statistics
Matches: 116, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
116 116 1.00
ACGTcount: A:0.30, C:0.32, G:0.09, T:0.29
Consensus pattern (116 bp):
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
GCCATCAGGCCTTATCACATATACACACACTTTCACATTCATCACATCGGC
Found at i:73316244 original size:165 final size:165
Alignment explanation
Indices: 73315982--73316285 Score: 563
Period size: 165 Copynumber: 1.8 Consensus size: 165
73315972 TATACACTTT
* *
73315982 CACATTCATCACATTGGCCATTAGGCCTTATCATATATATATACACTTTCACATTCATCACATCG
1 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
* *
73316047 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATCAGGCCTTATC
66 GCCATTAGGCCTTATCACATATACACACACTTTCACATTCATCACATCGGCCATCAGGCCTTATC
73316112 ACATATATACACACTTTCACATTCATCACATCGGC
131 ACATATATACACACTTTCACATTCATCACATCGGC
73316147 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
1 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
73316212 GCCATTAGGCCTTATCACATATACACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
66 GCCATTAGGCCTTATCACATATACACACACTTTCACATTCATCACATCGGCCATCAGGCCTTATC
73316277 ACATATATA
131 ACATATATA
73316286 TATCTCATAC
Statistics
Matches: 134, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
165 134 1.00
ACGTcount: A:0.31, C:0.30, G:0.09, T:0.31
Consensus pattern (165 bp):
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
GCCATTAGGCCTTATCACATATACACACACTTTCACATTCATCACATCGGCCATCAGGCCTTATC
ACATATATACACACTTTCACATTCATCACATCGGC
Found at i:73316283 original size:49 final size:49
Alignment explanation
Indices: 73316147--73316283 Score: 256
Period size: 49 Copynumber: 2.8 Consensus size: 49
73316137 TCACATCGGC
* *
73316147 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATCACATATACACACACTTT
73316196 CACATTCATCACATCGGCCATTAGGCCTTATCACATATACACACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATCACATATACACACACTTT
73316245 CACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 CACATTCATCACATCGGCCATTAGGCCTTATCACATATA
73316284 TATATCTCAT
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 86 1.00
ACGTcount: A:0.31, C:0.31, G:0.09, T:0.30
Consensus pattern (49 bp):
CACATTCATCACATCGGCCATTAGGCCTTATCACATATACACACACTTT
Found at i:73321405 original size:246 final size:247
Alignment explanation
Indices: 73320968--73321453 Score: 794
Period size: 246 Copynumber: 2.0 Consensus size: 247
73320958 AGTTCATGGT
73320968 GAGATAATTTTAGCCATGTATGAGGCCAAGTTTTTGAAATTGAGCAGATATACTTGTGATTTGGT
1 GAGATAATTTTAGCCATGTATGAGGCCAAGTTTTTGAAATTGAGCAGATATACTTGTGATTTGGT
* ** *
73321033 ATTTATGGACTATGATAAGAGTGTGTGGTTTCAAGAAGGTTTGTGTTATAATCTATGAGTTATGA
66 ATTTATGGACTATGATAACAGTGTACGATTTCAAGAAGGTTTGTGTTATAATCTATGAGTTATGA
* * * *
73321098 TAGCTCTTTAGAGGGAGTAAGTGTTTCTAGCCTTGGTTGACAAGGGAAAGATAGCGAAAGAAGTG
131 TAGCTCTTCAAAGGGAGCAAGTGTTTCTAGCCTTGGTTGACAAGGCAAAGATAGCGAAAGAAGTG
* *
73321163 AAGCGCACTGAGTGTGAGAGGAGAGACCAAGAGAGAGG-TCAAGTTTCTGTA
196 AAGCACACTGAATGTGAGAGGAGAGACCAAGAGAGAGGTTCAAGTTTCTGTA
* * *
73321214 GAGATAATTTTAGCCATGTATGATGCCAAGTTTTTGAGATTGAGCAGATATACTTGTGCTTTGGT
1 GAGATAATTTTAGCCATGTATGAGGCCAAGTTTTTGAAATTGAGCAGATATACTTGTGATTTGGT
* * *
73321279 ATTTATGGACTATGATAACAGTGTACGATTTGAAGAAGGTTTGTGTTATAATCTATGGGTTTTGA
66 ATTTATGGACTATGATAACAGTGTACGATTTCAAGAAGGTTTGTGTTATAATCTATGAGTTATGA
* *
73321344 TAGCTCTTCAAAGGGAGCGAGTGTTTCTAGCCTTGGTTGACAAGGCAAAGATAGTGAAAGAAGTG
131 TAGCTCTTCAAAGGGAGCAAGTGTTTCTAGCCTTGGTTGACAAGGCAAAGATAGCGAAAGAAGTG
*
73321409 AAGCATACTGAATGTGAGAGGAGAGACCAAGAGAGAGGTTCAAGT
196 AAGCACACTGAATGTGAGAGGAGAGACCAAGAGAGAGGTTCAAGT
73321454 AAGATTAAGA
Statistics
Matches: 220, Mismatches: 19, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
246 214 0.97
247 6 0.03
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.31
Consensus pattern (247 bp):
GAGATAATTTTAGCCATGTATGAGGCCAAGTTTTTGAAATTGAGCAGATATACTTGTGATTTGGT
ATTTATGGACTATGATAACAGTGTACGATTTCAAGAAGGTTTGTGTTATAATCTATGAGTTATGA
TAGCTCTTCAAAGGGAGCAAGTGTTTCTAGCCTTGGTTGACAAGGCAAAGATAGCGAAAGAAGTG
AAGCACACTGAATGTGAGAGGAGAGACCAAGAGAGAGGTTCAAGTTTCTGTA
Found at i:73322553 original size:20 final size:20
Alignment explanation
Indices: 73322528--73322567 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
73322518 GTACCAAAAG
73322528 AAATTATGGAGTTAAAAGTT
1 AAATTATGGAGTTAAAAGTT
73322548 AAATTATGGAGTTAAAAGTT
1 AAATTATGGAGTTAAAAGTT
73322568 CAACTTAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.20, T:0.35
Consensus pattern (20 bp):
AAATTATGGAGTTAAAAGTT
Found at i:73324268 original size:25 final size:25
Alignment explanation
Indices: 73324240--73324317 Score: 65
Period size: 24 Copynumber: 3.2 Consensus size: 25
73324230 AGAGTTTAGG
73324240 GTTTTTCCATGAAAGGATTTGTAAT
1 GTTTTTCCATGAAAGGATTTGTAAT
* * * **
73324265 G-TTTT-AAT-AATTAAGAGTT-TAGG
1 GTTTTTCCATGAA--AGGATTTGTAAT
73324288 GTTTTTCCATGAAAGGATTTGTAAT
1 GTTTTTCCATGAAAGGATTTGTAAT
73324313 GTTTT
1 GTTTT
73324318 CTGAGTTTTT
Statistics
Matches: 37, Mismatches: 10, Indels: 12
0.63 0.17 0.20
Matches are distributed among these distances:
22 2 0.05
23 5 0.14
24 18 0.49
25 10 0.27
26 2 0.05
ACGTcount: A:0.28, C:0.05, G:0.21, T:0.46
Consensus pattern (25 bp):
GTTTTTCCATGAAAGGATTTGTAAT
Found at i:73324277 original size:48 final size:48
Alignment explanation
Indices: 73324222--73324317 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
73324212 TATTTTGGAA
73324222 AATAATTAAGAGTTTAGGGTTTTTCCATGAAAGGATTTGTAATGTTTT
1 AATAATTAAGAGTTTAGGGTTTTTCCATGAAAGGATTTGTAATGTTTT
73324270 AATAATTAAGAGTTTAGGGTTTTTCCATGAAAGGATTTGTAATGTTTT
1 AATAATTAAGAGTTTAGGGTTTTTCCATGAAAGGATTTGTAATGTTTT
73324318 CTGAGTTTTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.31, C:0.04, G:0.21, T:0.44
Consensus pattern (48 bp):
AATAATTAAGAGTTTAGGGTTTTTCCATGAAAGGATTTGTAATGTTTT
Found at i:73324979 original size:46 final size:47
Alignment explanation
Indices: 73324928--73325151 Score: 178
Period size: 50 Copynumber: 4.7 Consensus size: 47
73324918 GTTATTGTGA
* *
73324928 GCTAGTGTAAGACTTGTCTGGGACATGCATCGGCCACATTATGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGGT
* *
73324974 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGG---CATTAAGACGGGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGA--GGT
* * * *
73325022 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTC--GA-GATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGGT
* * *
73325066 GTTAGTGTAAGACTATGTCTGGGACACGGCATC-GACACAGTTATGCTA-GT
1 GCTAGTGTAAGAC-ATGTCTGGGACA-TGCATCGGCCACA-TTATG--AGGT
*
73325116 GCTTGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
73325152 ACCTTACCCC
Statistics
Matches: 143, Mismatches: 16, Indels: 33
0.74 0.08 0.17
Matches are distributed among these distances:
44 14 0.10
45 21 0.15
46 26 0.18
47 27 0.19
48 21 0.15
49 2 0.01
50 29 0.20
51 3 0.02
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGGT
Found at i:73325118 original size:94 final size:93
Alignment explanation
Indices: 73324928--73325151 Score: 238
Period size: 94 Copynumber: 2.4 Consensus size: 93
73324918 GTTATTGTGA
* * *
73324928 GCTAGTGTAAGACTTGTCTGGGACATGCATCGGCCACATTATGAGAGCTAGTGTAAGACCATGTT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGAT-AGAGCTAGTGTAAGACCATGTC
* * *
73324993 TGGGACATGGCATCGGCATTAAGACGGGT
65 TGGGACACGGCATCGACATTAAGACGAGT
* * * * *
73325022 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGA-GAT-GTGTTAGTGTAAGACTATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATAGAGCTAGTGTAAGACCATGTC
* *
73325085 TGGGACACGGCATCGACACAGTTATG-CTAGT
65 TGGGACACGGCATCG--ACA-TTAAGACGAGT
*
73325116 GCTTGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
73325152 ACCTTACCCC
Statistics
Matches: 109, Mismatches: 15, Indels: 10
0.81 0.11 0.07
Matches are distributed among these distances:
92 31 0.28
94 52 0.48
95 18 0.17
96 8 0.07
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATAGAGCTAGTGTAAGACCATGTCT
GGGACACGGCATCGACATTAAGACGAGT
Found at i:73335841 original size:40 final size:40
Alignment explanation
Indices: 73335772--73335953 Score: 267
Period size: 40 Copynumber: 4.6 Consensus size: 40
73335762 AAACCAAGTA
* * *
73335772 CCTTCGGGATTTAG-CCGGATATCGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
73335811 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
73335851 CCTTCGGGTCTTAGCCCGGAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73335891 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
73335931 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
73335954 CATCCGAATA
Statistics
Matches: 127, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 12 0.09
40 115 0.91
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:73344149 original size:40 final size:40
Alignment explanation
Indices: 73344080--73344259 Score: 249
Period size: 40 Copynumber: 4.6 Consensus size: 40
73344070 AAACCAAGTA
* * *
73344080 CCTTCGGGATTTAG-CCGGATATCGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
73344119 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
73344159 CCTTCGGGTCTTAGCCCGGAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73344199 CCTTC-GGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
73344238 CCTTCGGGACTTAGCCC-GATAT
1 CCTTCGGGACTTAGCCCGGATAT
73344260 CATCCGAATA
Statistics
Matches: 124, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 52 0.42
40 72 0.58
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:73350573 original size:40 final size:40
Alignment explanation
Indices: 73350504--73350685 Score: 258
Period size: 40 Copynumber: 4.6 Consensus size: 40
73350494 AAACCAAGTA
* * *
73350504 CCTTCGGGATTTAG-CCGGATATCGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
73350543 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
73350583 CCTTCGGGTCTTAGCCCGGAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73350623 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73350663 CCTTCGGGACTTAGCCCGAATAT
1 CCTTCGGGACTTAGCCCGGATAT
73350686 CATCCGAATA
Statistics
Matches: 126, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 12 0.10
40 114 0.90
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:73368278 original size:99 final size:100
Alignment explanation
Indices: 73368101--73368345 Score: 305
Period size: 99 Copynumber: 2.5 Consensus size: 100
73368091 TAGCCAAAGC
* * * * ** *
73368101 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
73368166 TAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
66 TAGCCTGCACTTAGTACTACACACGTGATCACAAT
* * * * *
73368199 TATCCGGTACACGTGGTAGCCTGCACTTAGTACTGCACACGTGACCTAACCATCTGATACACGTA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACACGTA
*
73368264 GTAGCCTGCACTTAGTACTACACACGTGATCACAGT
65 GTAGCCTGCACTTAGTACTACACACGTGATCACAAT
* ** * *
73368300 TTTTGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
73368346 TCACAATAGA
Statistics
Matches: 122, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
98 38 0.31
99 43 0.35
100 1 0.01
101 40 0.33
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (100 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
TAGCCTGCACTTAGTACTACACACGTGATCACAAT
Found at i:73368281 original size:50 final size:49
Alignment explanation
Indices: 73368114--73368338 Score: 288
Period size: 49 Copynumber: 4.5 Consensus size: 49
73368104 CTGGTACGCA
* * *
73368114 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
73368163 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* * ** * *
73368212 TGGTAGCCTGCACTTAGTACTGCACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * ** * *
73368262 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTTGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACACG
73368313 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
73368339 TGCGACCTCA
Statistics
Matches: 153, Mismatches: 20, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
49 77 0.50
50 41 0.27
51 34 0.22
52 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:73373578 original size:25 final size:25
Alignment explanation
Indices: 73373549--73373602 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
73373539 GCCCGATGGG
73373549 CTGTTGGGCCCATAATAGGCAAAAA
1 CTGTTGGGCCCATAATAGGCAAAAA
73373574 CTGTTGGGCCCATAATAGGCAAAAA
1 CTGTTGGGCCCATAATAGGCAAAAA
73373599 CTGT
1 CTGT
73373603 ATGTTGATGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.22
Consensus pattern (25 bp):
CTGTTGGGCCCATAATAGGCAAAAA
Found at i:73373698 original size:29 final size:28
Alignment explanation
Indices: 73373658--73373727 Score: 95
Period size: 29 Copynumber: 2.5 Consensus size: 28
73373648 AATGTGACTA
* *
73373658 GGCCTAACGGGCCATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAATATGA-TTG
*
73373687 GGCCTAATGGGCCATATGAATATGATTG
1 GGCCTAATGGGCCATATAAATATGATTG
*
73373715 GGCTTAATGGGCC
1 GGCCTAATGGGCC
73373728 TGATACAGGT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 15 0.41
29 22 0.59
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (28 bp):
GGCCTAATGGGCCATATAAATATGATTG
Found at i:73373724 original size:28 final size:28
Alignment explanation
Indices: 73373643--73373727 Score: 107
Period size: 28 Copynumber: 3.0 Consensus size: 28
73373633 GTGAGCATGA
* * *
73373643 ATATGAATGTGACTAGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
*
73373671 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* *
73373700 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
73373728 TGATACAGGT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
28 26 0.53
29 23 0.47
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:73374971 original size:15 final size:15
Alignment explanation
Indices: 73374904--73374978 Score: 78
Period size: 15 Copynumber: 5.0 Consensus size: 15
73374894 TATGATATGG
*
73374904 TATCTTGGATTTCTG
1 TATCTTGGATTTCTT
* *
73374919 TACCTTGGATATCTT
1 TATCTTGGATTTCTT
* *
73374934 TATCTTGGATTCCTC
1 TATCTTGGATTTCTT
*
73374949 TGTCTTGGATTTCTT
1 TATCTTGGATTTCTT
* *
73374964 TATTTTGGTTTTCTT
1 TATCTTGGATTTCTT
73374979 GTTATCTTCA
Statistics
Matches: 47, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
15 47 1.00
ACGTcount: A:0.12, C:0.16, G:0.16, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:73379102 original size:12 final size:12
Alignment explanation
Indices: 73379085--73379109 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73379075 TTTTGCAAAT
73379085 TTATTTCAAGAA
1 TTATTTCAAGAA
73379097 TTATTTCAAGAA
1 TTATTTCAAGAA
73379109 T
1 T
73379110 GAGGAAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (12 bp):
TTATTTCAAGAA
Found at i:73382332 original size:48 final size:43
Alignment explanation
Indices: 73382258--73382418 Score: 146
Period size: 42 Copynumber: 3.7 Consensus size: 43
73382248 TGGTCCACAT
* *
73382258 ATCGATGCCATATCCCAAATATGGTCTTATACGAAGTCTCATGTC
1 ATCGATGCCATATCCCAGACATGGTCTTATACGAAGTCTCA--TC
** *
73382303 AGTGCTGATGCCATATCCCAGACATGGTCTTATACGGGGCCTCA-C
1 A-T-C-GATGCCATATCCCAGACATGGTCTTATACGAAGTCTCATC
* * *
73382348 ATCGATGCCATGTCCCAGACATGGTCTTACACGAAATCTCAT-
1 ATCGATGCCATATCCCAGACATGGTCTTATACGAAGTCTCATC
* * * **
73382390 ATCAACGCCATATTCCAGGTATGGTCTTA
1 ATCGATGCCATATCCCAGACATGGTCTTA
73382419 AATGAAATCA
Statistics
Matches: 95, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
42 55 0.58
43 1 0.01
44 1 0.01
45 3 0.03
46 1 0.01
47 1 0.01
48 33 0.35
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (43 bp):
ATCGATGCCATATCCCAGACATGGTCTTATACGAAGTCTCATC
Found at i:73382368 original size:42 final size:42
Alignment explanation
Indices: 73382223--73382376 Score: 130
Period size: 48 Copynumber: 3.5 Consensus size: 42
73382213 AAATGTCAAA
* * * * * * *
73382223 GCCATGTCCCTGACATGGTCTTACA-TGGTCCACATATCGAT
1 GCCATATCCCAGACATGGTCTTATACGGGGCCTCACATCGAT
* * ** *
73382264 GCCATATCCCAAATATGGTCTTATACGAAGTCTCATGTCAGTGCTGAT
1 GCCATATCCCAGACATGGTCTTATACGGGGCCTCA---CA-T-C-GAT
73382312 GCCATATCCCAGACATGGTCTTATACGGGGCCTCACATCGAT
1 GCCATATCCCAGACATGGTCTTATACGGGGCCTCACATCGAT
*
73382354 GCCATGTCCCAGACATGGTCTTA
1 GCCATATCCCAGACATGGTCTTA
73382377 CACGAAATCT
Statistics
Matches: 88, Mismatches: 18, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
41 20 0.23
42 28 0.32
43 1 0.01
44 1 0.01
45 3 0.03
46 1 0.01
47 1 0.01
48 33 0.38
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (42 bp):
GCCATATCCCAGACATGGTCTTATACGGGGCCTCACATCGAT
Found at i:73382375 original size:90 final size:89
Alignment explanation
Indices: 73382223--73382389 Score: 217
Period size: 90 Copynumber: 1.9 Consensus size: 89
73382213 AAATGTCAAA
* * * * * * *
73382223 GCCATGTCCCTGACATGGTCTTACATGGTCCACATATCGATGCCATATCCCAAATATGGTCTTAT
1 GCCATATCCCAGACATGGTCTTACAGGGGCCACACATCGATGCCATATCCCAAACATGGTCTTAC
*
73382288 ACGAAGTCTCATGTCAGTGCTGAT
66 ACGAAATCTCATGTCAGTGCTGAT
* * * *
73382312 GCCATATCCCAGACATGGTCTTATACGGGGCCTCACATCGATGCCATGTCCCAGACATGGTCTTA
1 GCCATATCCCAGACATGGTCTTACA-GGGGCCACACATCGATGCCATATCCCAAACATGGTCTTA
73382377 CACGAAATCTCAT
65 CACGAAATCTCAT
73382390 ATCAACGCCA
Statistics
Matches: 65, Mismatches: 12, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
89 22 0.34
90 43 0.66
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (89 bp):
GCCATATCCCAGACATGGTCTTACAGGGGCCACACATCGATGCCATATCCCAAACATGGTCTTAC
ACGAAATCTCATGTCAGTGCTGAT
Found at i:73382400 original size:42 final size:42
Alignment explanation
Indices: 73382312--73382432 Score: 107
Period size: 42 Copynumber: 2.9 Consensus size: 42
73382302 CAGTGCTGAT
* **** * * *
73382312 GCCATATCCCAGACATGGTCTTATACGGGGCCTCACATCGAT
1 GCCATATCCCAGACATGGTCTTAAACGAAATCTCATATCAAC
* *
73382354 GCCATGTCCCAGACATGGTCTTACACGAAATCTCATATCAAC
1 GCCATATCCCAGACATGGTCTTAAACGAAATCTCATATCAAC
* ** * *
73382396 GCCATATTCCAGGTATGGTCTTAAATGAAATCACATA
1 GCCATATCCCAGACATGGTCTTAAACGAAATCTCATA
73382433 CTGATGTCGA
Statistics
Matches: 63, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (42 bp):
GCCATATCCCAGACATGGTCTTAAACGAAATCTCATATCAAC
Found at i:73382532 original size:48 final size:48
Alignment explanation
Indices: 73382480--73382572 Score: 123
Period size: 48 Copynumber: 1.9 Consensus size: 48
73382470 TGGAATACAT
73382480 ATCAACCCCGATGCCAAGCCCCAGACATGGTCTTACACTGGCTCTCAC
1 ATCAACCCCGATGCCAAGCCCCAGACATGGTCTTACACTGGCTCTCAC
**** * * *
73382528 ATCAATGTTGATGCCATGTCCTAGACATGGTCTTACACTGGCTCT
1 ATCAACCCCGATGCCAAGCCCCAGACATGGTCTTACACTGGCTCT
73382573 GATTAATCGT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 38 1.00
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.26
Consensus pattern (48 bp):
ATCAACCCCGATGCCAAGCCCCAGACATGGTCTTACACTGGCTCTCAC
Found at i:73394440 original size:40 final size:40
Alignment explanation
Indices: 73394366--73394547 Score: 165
Period size: 40 Copynumber: 4.6 Consensus size: 40
73394356 AATTCACGTA
* **
73394366 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAACAACTCGCACAATTG
* *** *
73394405 CCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACAATTG
*
73394445 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TG
1 CCTTCGGGTCTTAACCCGGATATAACAACTCGCAC-AATTG
* * * * *
73394485 CCTTCGGGTCTTAGCCTGGATATAATC-ACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAA-CAACTCGCACAATTG
* *
73394525 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGTCTTAACCCGGATAT
73394548 CATTCAAATG
Statistics
Matches: 120, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 102 0.85
41 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAACAACTCGCACAATTG
Found at i:73394527 original size:80 final size:80
Alignment explanation
Indices: 73394366--73394547 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
73394356 AATTCACGTA
* * * * **
73394366 CCTTCGGGATTTA-ACCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGG
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
* *
73394430 TAACTTGCACAATTG
66 TAACTAGCACAAATG
* ** * *
73394445 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCTGGATATA
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATA
* *
73394509 ATCACTAGCATAAATG
65 ATAACTAGCACAAATG
73394525 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
73394548 CATTCAAATG
Statistics
Matches: 85, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 11 0.13
80 72 0.85
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.27
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
TAACTAGCACAAATG
Found at i:73399616 original size:46 final size:46
Alignment explanation
Indices: 73399541--73399759 Score: 251
Period size: 46 Copynumber: 4.7 Consensus size: 46
73399531 TTATCTTTGA
* * * * *
73399541 CATGATGCCATAGTATCTTTCAACTATGGTTTTACTCGTTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTC-ATTTCATGT
* **
73399587 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGT
*
73399634 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* ** * * *
73399680 TACATTGCCATGGTATCTTTCAACCATAGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* **
73399726 CAGGTTTTCATGGTATCTTTCAACCATGGTCTTA
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA
73399760 TTCAACCATG
Statistics
Matches: 149, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
46 109 0.73
47 40 0.27
ACGTcount: A:0.21, C:0.22, G:0.14, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:73399705 original size:93 final size:91
Alignment explanation
Indices: 73399541--73399763 Score: 257
Period size: 93 Copynumber: 2.4 Consensus size: 91
73399531 TTATCTTTGA
* * * * * * **
73399541 CATGATGCCATAGTATCTTTCAACTATGGTTTTACTCGTTTTCTGTCATGTTGCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTC-ATTTCTGTCACATTGCCATGGTATCTT
* ** * *
73399606 TCAACCATGGTCTTATTCATTTTCCCGT
65 TCAACCATAGTCTTACACA-TTTCACAT
*
73399634 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTTACATTGCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTC-TGTCACATTGCCATGGTATCTT
*
73399699 TCAACCATAGTCTTACACATTTCATAT
65 TCAACCATAGTCTTACACATTTCACAT
* **
73399726 CAGGTTTTCATGGTATCTTTCAACCATGGTCTTATTCA
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
73399764 ACCATGGTCT
Statistics
Matches: 111, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
92 44 0.40
93 67 0.60
ACGTcount: A:0.21, C:0.22, G:0.14, T:0.43
Consensus pattern (91 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCTGTCACATTGCCATGGTATCTTT
CAACCATAGTCTTACACATTTCACAT
Found at i:73399753 original size:16 final size:16
Alignment explanation
Indices: 73399734--73399771 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
73399724 ATCAGGTTTT
73399734 CATGGTATCT-TTCAAC
1 CATGGTAT-TATTCAAC
*
73399750 CATGGTCTTATTCAAC
1 CATGGTATTATTCAAC
73399766 CATGGT
1 CATGGT
73399772 CTTACACATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 1 0.05
16 19 0.95
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (16 bp):
CATGGTATTATTCAAC
Found at i:73399764 original size:62 final size:62
Alignment explanation
Indices: 73399698--73399821 Score: 212
Period size: 62 Copynumber: 2.0 Consensus size: 62
73399688 CATGGTATCT
** *
73399698 TTCAACCATAGTCTTACACATTTCATATCAGGTTTTCATGGTATCTTTCAACCATGGTCTTA
1 TTCAACCATAGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATAGTCTTA
*
73399760 TTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATAGTCTTA
1 TTCAACCATAGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATAGTCTTA
73399822 CACATTTCAT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.26, C:0.23, G:0.12, T:0.39
Consensus pattern (62 bp):
TTCAACCATAGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATAGTCTTA
Found at i:73399772 original size:16 final size:16
Alignment explanation
Indices: 73399744--73399775 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
73399734 CATGGTATCT
73399744 TTCAACCATGGTCTTA
1 TTCAACCATGGTCTTA
73399760 TTCAACCATGGTCTTA
1 TTCAACCATGGTCTTA
73399776 CACATTTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.38
Consensus pattern (16 bp):
TTCAACCATGGTCTTA
Found at i:73409206 original size:5 final size:6
Alignment explanation
Indices: 73409175--73409211 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
73409165 GAGAGAAATG
**
73409175 AAAGAA AAAGAA ATCGAA AAAGAA AAAGAA AAAGAA A
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA A
73409212 GTGAGAAACA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.78, C:0.03, G:0.16, T:0.03
Consensus pattern (6 bp):
AAAGAA
Found at i:73411456 original size:43 final size:42
Alignment explanation
Indices: 73411408--73411493 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 42
73411398 TTAAAGAAAG
* * *
73411408 CATGCATGGGATGGTATTAAAGGAGCT-GTTGATTTCTCCTTTT
1 CATGCATAGGACGGTATTAAAGGAG-TAGTTGATTCCT-CTTTT
73411451 CATGCATAGGACGGTATTAAAGGAGTAGTTGATTCCTCTTTT
1 CATGCATAGGACGGTATTAAAGGAGTAGTTGATTCCTCTTTT
73411493 C
1 C
73411494 CATGTGCCTA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
42 7 0.18
43 32 0.82
ACGTcount: A:0.23, C:0.15, G:0.24, T:0.37
Consensus pattern (42 bp):
CATGCATAGGACGGTATTAAAGGAGTAGTTGATTCCTCTTTT
Found at i:73414394 original size:7 final size:7
Alignment explanation
Indices: 73414382--73414406 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
73414372 TAATAAAAAT
73414382 TATTTTA
1 TATTTTA
73414389 TATTTTA
1 TATTTTA
73414396 TATTTTA
1 TATTTTA
73414403 TATT
1 TATT
73414407 AAAACAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TATTTTA
Found at i:73414861 original size:28 final size:26
Alignment explanation
Indices: 73414830--73414888 Score: 64
Period size: 28 Copynumber: 2.2 Consensus size: 26
73414820 AAAATATTAT
*
73414830 ATTAATGTATTATAATAAATTTATTTTA
1 ATTAATGTATTATAA-AAAATTA-TTTA
* * *
73414858 ATTACTTTTTTATAAAAAATTATTTA
1 ATTAATGTATTATAAAAAATTATTTA
73414884 ATTAA
1 ATTAA
73414889 CCTAAAAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 8 0.31
27 6 0.23
28 12 0.46
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (26 bp):
ATTAATGTATTATAAAAAATTATTTA
Found at i:73416441 original size:17 final size:18
Alignment explanation
Indices: 73416409--73416443 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
73416399 TTTTTTAAGA
73416409 ATATTTTTAGACTAAAAG
1 ATATTTTTAGACTAAAAG
*
73416427 ATATTTTT-GAGTAAAAG
1 ATATTTTTAGACTAAAAG
73416444 TTAAAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.43, C:0.03, G:0.14, T:0.40
Consensus pattern (18 bp):
ATATTTTTAGACTAAAAG
Found at i:73416573 original size:18 final size:17
Alignment explanation
Indices: 73416534--73416577 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
73416524 CTTATTTAAC
*
73416534 AATTA-TTTTATCTCAA
1 AATTATTTTTTTCTCAA
73416550 AA-TATTTTTTTCTCTAA
1 AATTATTTTTTTCTC-AA
73416567 AATTATTTTTT
1 AATTATTTTTT
73416578 CAAAGTAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 2 0.08
16 10 0.42
17 4 0.17
18 8 0.33
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (17 bp):
AATTATTTTTTTCTCAA
Found at i:73416578 original size:17 final size:16
Alignment explanation
Indices: 73416534--73416578 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 16
73416524 CTTATTTAAC
*
73416534 AATTATTTTATCTCAA
1 AATTATTTTTTCTCAA
73416550 AA-TATTTTTTTCTCTAA
1 AATTA-TTTTTTCTC-AA
73416567 AATTATTTTTTC
1 AATTATTTTTTC
73416579 AAAGTAATAC
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 2 0.08
16 10 0.40
17 11 0.44
18 2 0.08
ACGTcount: A:0.31, C:0.11, G:0.00, T:0.58
Consensus pattern (16 bp):
AATTATTTTTTCTCAA
Found at i:73421214 original size:3 final size:3
Alignment explanation
Indices: 73421206--73421259 Score: 65
Period size: 3 Copynumber: 17.7 Consensus size: 3
73421196 TTGCAGCACT
* *
73421206 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA AAA GGA GATA -AA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA-A GAA GAA
73421251 TGAA GAA GA
1 -GAA GAA GA
73421260 TTGCCTCGAG
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
2 1 0.02
3 39 0.89
4 4 0.09
ACGTcount: A:0.65, C:0.00, G:0.31, T:0.04
Consensus pattern (3 bp):
GAA
Found at i:73423018 original size:18 final size:18
Alignment explanation
Indices: 73422977--73423018 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
73422967 CGGCACCATC
**
73422977 ATTTTTTTAAAAATTTTA
1 ATTTTTTTAAAAATAATA
73422995 ATTTTTTTAAAAA-AATA
1 ATTTTTTTAAAAATAATA
*
73423012 ATATTTT
1 ATTTTTT
73423019 AATAATGGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTTTTTTAAAAATAATA
Found at i:73424156 original size:18 final size:18
Alignment explanation
Indices: 73424133--73424168 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
73424123 CATTAACTAA
73424133 GCCATTTGACCATCCAAG
1 GCCATTTGACCATCCAAG
*
73424151 GCCATTTGACCATTCAAG
1 GCCATTTGACCATCCAAG
73424169 TTAATTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.25
Consensus pattern (18 bp):
GCCATTTGACCATCCAAG
Found at i:73426202 original size:3 final size:3
Alignment explanation
Indices: 73426194--73426240 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
73426184 ACTGGCAACA
73426194 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
73426241 AAGAAGGGTG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:73426782 original size:17 final size:18
Alignment explanation
Indices: 73426742--73426790 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
73426732 AGTAATATTT
73426742 TAAAAATATATAAAAAAA
1 TAAAAATATATAAAAAAA
* **
73426760 TGAAAATA-ATATTAAAA
1 TAAAAATATATAAAAAAA
*
73426777 TAAAAATATCTAAA
1 TAAAAATATATAAA
73426791 TTATAAAAAA
Statistics
Matches: 23, Mismatches: 7, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (18 bp):
TAAAAATATATAAAAAAA
Found at i:73426906 original size:19 final size:20
Alignment explanation
Indices: 73426879--73426936 Score: 82
Period size: 19 Copynumber: 2.8 Consensus size: 20
73426869 TAAAATTTAC
73426879 AAAATATTATAAAAAAAAA-T
1 AAAA-ATTATAAAAAAAAATT
73426899 AAAAATTATAAAAAAAAATT
1 AAAAATTATAAAAAAAAATT
73426919 AAAAATATATGAAAAAAA
1 AAAAAT-TAT-AAAAAAA
73426937 TTTATGAAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
19 14 0.40
20 11 0.31
21 3 0.09
22 7 0.20
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (20 bp):
AAAAATTATAAAAAAAAATT
Found at i:73426917 original size:13 final size:13
Alignment explanation
Indices: 73426893--73426925 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
73426883 TATTATAAAA
73426893 AAAAATAAAAATT
1 AAAAATAAAAATT
73426906 ATAAAA-AAAAATT
1 A-AAAATAAAAATT
73426919 AAAAATA
1 AAAAATA
73426926 TATGAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
12 4 0.22
13 10 0.56
14 4 0.22
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (13 bp):
AAAAATAAAAATT
Found at i:73426937 original size:20 final size:20
Alignment explanation
Indices: 73426879--73426938 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
73426869 TAAAATTTAC
*
73426879 AAAATATTATAAAAAAAAATA
1 AAAATA-TATAAAAAAAATTA
73426900 AAAAT-TATAAAAAAAAATTA
1 AAAATATAT-AAAAAAAATTA
*
73426920 AAAATATATGAAAAAAATT
1 AAAATATATAAAAAAAATT
73426939 TATGAAACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
19 3 0.09
20 24 0.69
21 8 0.23
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (20 bp):
AAAATATATAAAAAAAATTA
Found at i:73427288 original size:17 final size:18
Alignment explanation
Indices: 73427251--73427293 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
73427241 TTTTGGTACC
73427251 TTTCTATATTTTTTTAAT
1 TTTCTATATTTTTTTAAT
*
73427269 TTTC-ATATTTTTTTATT
1 TTTCTATATTTTTTTAAT
*
73427286 TTTTTATA
1 TTTCTATA
73427294 AATTTTCTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTCTATATTTTTTTAAT
Found at i:73428071 original size:61 final size:61
Alignment explanation
Indices: 73428005--73428141 Score: 229
Period size: 61 Copynumber: 2.2 Consensus size: 61
73427995 ACTTACATGA
* * *
73428005 TCTATCAATTTGATCCTAGTTCTAAATAATTCAATAAACGTAACCTTTCATATTTACAAAT
1 TCTATCAATTTGATCCTAATTCTAAATAATTCAATAAACGTAACCATTCACATTTACAAAT
**
73428066 TCTATCAATTTGATCCTAATTCTAAATAATTCAATAAATTTAACCATTCACATTTACAAAT
1 TCTATCAATTTGATCCTAATTCTAAATAATTCAATAAACGTAACCATTCACATTTACAAAT
73428127 TCTATCAATTTGATC
1 TCTATCAATTTGATC
73428142 TTCAAACTTC
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 71 1.00
ACGTcount: A:0.38, C:0.18, G:0.04, T:0.40
Consensus pattern (61 bp):
TCTATCAATTTGATCCTAATTCTAAATAATTCAATAAACGTAACCATTCACATTTACAAAT
Found at i:73428534 original size:38 final size:38
Alignment explanation
Indices: 73428483--73428560 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
73428473 AAGGGAGAGA
73428483 TAAACACTAATTTTTAAAAACTAAAACACTTGTGGACC
1 TAAACACTAATTTTTAAAAACTAAAACACTTGTGGACC
73428521 TAAACACTAATTTTTAAAAACTAAAACACTTGTGGACC
1 TAAACACTAATTTTTAAAAACTAAAACACTTGTGGACC
73428559 TA
1 TA
73428561 TAATTTTTCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.45, C:0.18, G:0.08, T:0.29
Consensus pattern (38 bp):
TAAACACTAATTTTTAAAAACTAAAACACTTGTGGACC
Found at i:73430772 original size:13 final size:13
Alignment explanation
Indices: 73430751--73430790 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
73430741 GTCTATAAAA
73430751 AAAATAGATAT-C
1 AAAATAGATATAC
*
73430763 AAAATCAGATGTAC
1 AAAAT-AGATATAC
73430777 AAAATAGATATAC
1 AAAATAGATATAC
73430790 A
1 A
73430791 GAATCTACCC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 5 0.21
13 13 0.54
14 6 0.25
ACGTcount: A:0.57, C:0.10, G:0.10, T:0.23
Consensus pattern (13 bp):
AAAATAGATATAC
Found at i:73430779 original size:14 final size:14
Alignment explanation
Indices: 73430751--73430795 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 14
73430741 GTCTATAAAA
73430751 AAAAT-AGATAT-C
1 AAAATCAGATATAC
*
73430763 AAAATCAGATGTAC
1 AAAATCAGATATAC
73430777 AAAAT-AGATATAC
1 AAAATCAGATATAC
*
73430790 AGAATC
1 AAAATC
73430796 TACCCCTATC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 5 0.19
13 16 0.59
14 6 0.22
ACGTcount: A:0.56, C:0.11, G:0.11, T:0.22
Consensus pattern (14 bp):
AAAATCAGATATAC
Found at i:73447945 original size:20 final size:19
Alignment explanation
Indices: 73447920--73447968 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
73447910 TATAAAATAT
**
73447920 CTGTTAATAAAATTTCAAAA
1 CTGTTAATAAAACAT-AAAA
*
73447940 CTGTTAACTAATACATAAAA
1 CTGTTAA-TAAAACATAAAA
73447960 CTGTTAATA
1 CTGTTAATA
73447969 CAGATAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 2 0.08
20 18 0.72
21 5 0.20
ACGTcount: A:0.47, C:0.12, G:0.06, T:0.35
Consensus pattern (19 bp):
CTGTTAATAAAACATAAAA
Found at i:73456283 original size:27 final size:27
Alignment explanation
Indices: 73456220--73456299 Score: 79
Period size: 27 Copynumber: 3.0 Consensus size: 27
73456210 CGATAGTCTT
* * *
73456220 TGTGGCATACTTTGGATGGATCACCTT
1 TGTGGCGTACTTTGAATGGATCACCTA
* * *
73456247 TTTGGAGTACTTTGAATGGATCGCCTA
1 TGTGGCGTACTTTGAATGGATCACCTA
***
73456274 TGTGGCGTACTCCAAATGGATCACCT
1 TGTGGCGTACTTTGAATGGATCACCT
73456300 TTATGGTGTA
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.34
Consensus pattern (27 bp):
TGTGGCGTACTTTGAATGGATCACCTA
Found at i:73456310 original size:27 final size:27
Alignment explanation
Indices: 73456235--73456312 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 27
73456225 CATACTTTGG
* ***
73456235 ATGGATCACCTTTTTGGAGTACTTTGA
1 ATGGATCACCTTTATGGAGTACTCCAA
* * * *
73456262 ATGGATCGCCTATGTGGCGTACTCCAA
1 ATGGATCACCTTTATGGAGTACTCCAA
*
73456289 ATGGATCACCTTTATGGTGTACTC
1 ATGGATCACCTTTATGGAGTACTC
73456313 TAATTAGATT
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.22, C:0.21, G:0.23, T:0.35
Consensus pattern (27 bp):
ATGGATCACCTTTATGGAGTACTCCAA
Found at i:73460911 original size:3 final size:3
Alignment explanation
Indices: 73460905--73460962 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
73460895 ATATAACAAC
73460905 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
73460953 AAT AAT AAT A
1 AAT AAT AAT A
73460963 TGTGTAAATA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:73466399 original size:24 final size:26
Alignment explanation
Indices: 73466371--73466418 Score: 64
Period size: 24 Copynumber: 1.9 Consensus size: 26
73466361 AAATCGTTTT
73466371 TGAAAAAT-GAAAATAA-AAAATATG
1 TGAAAAATAGAAAATAATAAAATATG
* *
73466395 TGAAAATTAGAATATAATAAAATA
1 TGAAAAATAGAAAATAATAAAATA
73466419 ATGTTTTCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 7 0.35
25 7 0.35
26 6 0.30
ACGTcount: A:0.65, C:0.00, G:0.10, T:0.25
Consensus pattern (26 bp):
TGAAAAATAGAAAATAATAAAATATG
Found at i:73467066 original size:20 final size:20
Alignment explanation
Indices: 73467041--73467081 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
73467031 AAGTAAGTGG
73467041 ATTTTATT-AAATTCAGATTA
1 ATTTTATTCAAATTCA-ATTA
73467061 ATTTTATTCAAATTCAATTA
1 ATTTTATTCAAATTCAATTA
73467081 A
1 A
73467082 CTTATAACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.49
Consensus pattern (20 bp):
ATTTTATTCAAATTCAATTA
Done.