Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 257 of 444
Found at i:73467126 original size:22 final size:22
Alignment explanation
Indices: 73467101--73467144 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
73467091 TTTCAAACAC
*
73467101 TTTTGTAAACTATTTAAGTTTA
1 TTTTGTAAACTATTTAAATTTA
*
73467123 TTTTGTACACTATTTAAATTTA
1 TTTTGTAAACTATTTAAATTTA
73467145 AGTTATGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.32, C:0.07, G:0.07, T:0.55
Consensus pattern (22 bp):
TTTTGTAAACTATTTAAATTTA
Found at i:73470363 original size:26 final size:26
Alignment explanation
Indices: 73470304--73470386 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
73470294 TGATACAAAT
* *
73470304 TGATAATAGGTTAGGTAAATG-TCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
73470329 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
73470355 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
73470381 TGATAA
1 TGATAA
73470387 GAATATCATG
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
25 20 0.36
26 35 0.64
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:73472408 original size:136 final size:137
Alignment explanation
Indices: 73472164--73472449 Score: 547
Period size: 136 Copynumber: 2.1 Consensus size: 137
73472154 GAGTAGTCTC
73472164 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
73472229 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGG-CCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
73472293 ACTGTTA
131 ACTGTTA
73472300 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
73472365 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
73472430 ACTGTTA
131 ACTGTTA
**
73472437 CCTGAATGGGCTT
1 CCCAAATGGGCTT
73472450 AGGCCCAATA
Statistics
Matches: 147, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
136 121 0.82
137 26 0.18
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:73477553 original size:25 final size:26
Alignment explanation
Indices: 73477485--73477567 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
73477475 TGATACAAAT
*
73477485 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
73477511 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
73477537 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
73477562 TGATAA
1 TGATAA
73477568 GAATTCATGT
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
25 24 0.44
26 31 0.56
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:73479085 original size:25 final size:26
Alignment explanation
Indices: 73479044--73479095 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
73479034 ATTTACAGTT
73479044 TACCCCTAGGTGAAAATT-ACCGAAA
1 TACCCCTAGGTGAAAATTGACCGAAA
* *
73479069 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGTG-AAAATTGACCGAAA
73479095 T
1 T
73479096 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 1 0.04
25 15 0.65
26 7 0.30
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGTGAAAATTGACCGAAA
Found at i:73479625 original size:137 final size:137
Alignment explanation
Indices: 73479343--73479618 Score: 534
Period size: 137 Copynumber: 2.0 Consensus size: 137
73479333 GAGTAGTCTC
73479343 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
73479408 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCTAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
*
73479473 ACTGTTA
131 ACTATTA
73479480 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
73479545 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
73479610 ACTATTA
131 ACTATTA
73479617 CC
1 CC
73479619 TGAATGGCTT
Statistics
Matches: 137, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 137 1.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTATTA
Found at i:73481872 original size:2 final size:2
Alignment explanation
Indices: 73481865--73481904 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
73481855 ATATGTACGC
*
73481865 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73481905 GTTTGTGAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73483654 original size:26 final size:26
Alignment explanation
Indices: 73483618--73483669 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
73483608 AAATGATAGT
73483618 TTCACAAAAAAAATTTTGCTTTTATA
1 TTCACAAAAAAAATTTTGCTTTTATA
**
73483644 TTCACAAAAAATTTTTTGCTTTTATA
1 TTCACAAAAAAAATTTTGCTTTTATA
73483670 GCCCCTTGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.38, C:0.12, G:0.04, T:0.46
Consensus pattern (26 bp):
TTCACAAAAAAAATTTTGCTTTTATA
Found at i:73487445 original size:21 final size:21
Alignment explanation
Indices: 73487416--73487455 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
73487406 TAAAATTATT
*
73487416 ATATACTTTTATTATCTTTGC
1 ATATACTTTAATTATCTTTGC
* *
73487437 ATATTCTTTAATTTTCTTT
1 ATATACTTTAATTATCTTT
73487456 TATTATATAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.12, G:0.03, T:0.62
Consensus pattern (21 bp):
ATATACTTTAATTATCTTTGC
Found at i:73488627 original size:3 final size:3
Alignment explanation
Indices: 73488621--73488652 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
73488611 TAAAAGTATG
73488621 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
73488653 TCTACAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:73489496 original size:16 final size:17
Alignment explanation
Indices: 73489459--73489496 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
73489449 TTTTTTCTTC
*
73489459 TTTTTTTTGGGGGTTAG
1 TTTTTTTTGGGGGTAAG
*
73489476 GTTTTTTT-GGGGTAAG
1 TTTTTTTTGGGGGTAAG
73489492 TTTTT
1 TTTTT
73489497 CTTTTTCTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.08, C:0.00, G:0.32, T:0.61
Consensus pattern (17 bp):
TTTTTTTTGGGGGTAAG
Found at i:73489511 original size:16 final size:16
Alignment explanation
Indices: 73489492--73489526 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
73489482 TTGGGGTAAG
73489492 TTTTTCTTT-TTCTTTT
1 TTTTTCTTTGTT-TTTT
73489508 TTTTTCTTTGTTTTTT
1 TTTTTCTTTGTTTTTT
73489524 TTT
1 TTT
73489527 GGGTTAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.89
Consensus pattern (16 bp):
TTTTTCTTTGTTTTTT
Found at i:73490278 original size:88 final size:83
Alignment explanation
Indices: 73490171--73490747 Score: 283
Period size: 88 Copynumber: 7.0 Consensus size: 83
73490161 AACAGACATT
** * *
73490171 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
73490236 TTGATTTTTTGAAACTTAACTTG
65 TTGATTTTTTGAAA---AAC-TG
* * * **
73490259 AAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGGAGG-TCCAACTCACCTCTCGCAATATG
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGC-CAAGGCT-CAACTCACCTCTCGCAATATG
*
73490322 AGTTGA-TTTTTGAAAAACAG
63 AGTTGATTTTTTGAAAAACTG
* * * * ** *** *
73490342 AAATTAAAAGA--CT-CAACTCAACTCTCGCA-GAAATTAAAAAGCTCAACTCACCTCTCGCAAT
1 AAA--AACAGATTTTGAAAAT--AC-CTCGCACGTGA-GCCAAGGCTCAACTCACCTCTCGCAAT
73490403 ATGAGTTGAATTTTTTTG--AAA---
60 ATGAGTTG-A-TTTTTTGAAAAACTG
** * *
73490424 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
*
73490489 TTGA-TTTTTGAAAACAGAATTTG
65 TTGATTTTTTG--AA-A-AA-CTG
* * * * * *
73490512 AAAAACAGATTTTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACATCTCGCAATGTGAG
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
73490577 TTGATTTTTTTGAAAAA-T-
65 TTGA-TTTTTTGAAAAACTG
* *** *** * *
73490595 --ATA-A-ATTGAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
73490655 GTTGATTTTTTTG--AAA--G
64 GTTGA-TTTTTTGAAAAACTG
* * * * * * *
73490672 ATAGA-A-A--TTGAAAATAGCTCAGCGCATGAGCCAAGGGTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
73490733 TTGATTTTTTGAAAA
65 TTGATTTTTTGAAAA
73490748 CAGAAATTGA
Statistics
Matches: 382, Mismatches: 67, Indels: 90
0.71 0.12 0.17
Matches are distributed among these distances:
76 9 0.02
77 47 0.12
78 8 0.02
79 58 0.15
80 12 0.03
81 36 0.09
82 9 0.02
83 11 0.03
84 37 0.10
85 13 0.03
86 2 0.01
87 20 0.05
88 114 0.30
90 6 0.02
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (83 bp):
AAAAACAGATTTTGAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTGAAAAACTG
Found at i:73490375 original size:30 final size:30
Alignment explanation
Indices: 73490339--73490400 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
73490329 TTTTGAAAAA
73490339 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
73490369 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
73490399 CA
1 CA
73490401 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:73490518 original size:14 final size:14
Alignment explanation
Indices: 73490495--73490529 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
73490485 TGAGTTGATT
73490495 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
73490508 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
73490522 TTTGAAAA
1 TTTGAAAA
73490530 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:73490830 original size:72 final size:73
Alignment explanation
Indices: 73490547--73491079 Score: 397
Period size: 72 Copynumber: 6.8 Consensus size: 73
73490537 ACATGTAACC
* * * *
73490547 CGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATAC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAACAGAAATTG--AAAATAC
* *
73490612 CTCAGTGTGTGAT
62 CTCAGCGTGT-CT
* * *
73490625 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATAGC
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACC
*
73490690 TCAGCGCATGAGC-
63 TCAGCG--TG-TCT
* * *
73490703 CAAGGGTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
73490768 ACGTGTCT
66 GCGTGTCT
* ** * * *
73490776 TGAGGCTCAACTCATTTCTCACAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
73490840 GCGTGTCC
66 GCGTGTCT
*
73490848 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTTTTGAAATGCAGAAATTGAA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--------TTTTTTGAAA-ACAGAAATTG--
** ** *
73490913 AAATGGAAATTGAAAATACCTCGACGTGTGAT
55 --A---AAA-T--ACCT-CAGC---GTGT-CT
* * *
73490945 CTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTTTTTGACAACAGAAATTGAAATTACCT
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCT
73491010 CAGCGTGTC-
64 CAGCGTGTCT
* *
73491019 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAAAAATTGAAAA
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAA
73491080 ACGGAAATTG
Statistics
Matches: 366, Mismatches: 56, Indels: 69
0.75 0.11 0.14
Matches are distributed among these distances:
72 65 0.18
73 29 0.08
74 43 0.12
75 32 0.09
76 14 0.04
77 41 0.11
78 5 0.01
79 51 0.14
80 2 0.01
81 8 0.02
82 10 0.03
83 2 0.01
86 2 0.01
89 2 0.01
90 10 0.03
91 9 0.02
92 2 0.01
93 2 0.01
96 4 0.01
97 1 0.00
98 32 0.09
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (73 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
GCGTGTCT
Found at i:73491032 original size:172 final size:168
Alignment explanation
Indices: 73490744--73491222 Score: 711
Period size: 165 Copynumber: 2.9 Consensus size: 168
73490734 TGATTTTTTG
* * * ** * *
73490744 AAAACAGAAATTGAAAATACCTCAACGTGT-CT-TGAGGCTCAACTCATTTCTCACAATATGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* * *
73490807 TGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
66 TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
* *
73490871 ATATGAGTTGATTTTTTTTTTTTTTGAAATGCAGAAATTGA
131 ATATGAGTTGA---TTTTTTTTTTTGAAAGGCAAAAATTGA
*
73490912 AAAATGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
73490977 TGACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
73491042 AATATGAGTTGA----TTTTTTTGAAAGGCAAAAATTGA
130 AATATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTGA
* * * *
73491077 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
73491142 TGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
73491207 AATATGAGTTGATTTT
130 AATATGAGTTGATTTT
73491223 GAAAAAGTAG
Statistics
Matches: 284, Mismatches: 19, Indels: 15
0.89 0.06 0.05
Matches are distributed among these distances:
165 157 0.55
168 27 0.10
169 1 0.00
170 30 0.11
172 69 0.24
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (168 bp):
AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTGA
Found at i:73491041 original size:74 final size:75
Alignment explanation
Indices: 73490918--73491079 Score: 222
Period size: 74 Copynumber: 2.1 Consensus size: 75
73490908 TTGAAAAATG
*
73490918 GAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
1 GAAATTGAAAATACCTCGACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
73490983 TTTTGACAACA
65 TTTTGACAACA
* * *
73490994 GAAATTGAAATTACCTC-AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 GAAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
73491057 TTTTGA-AAGGCA
65 TTTTGACAA--CA
*
73491069 AAAATTGAAAA
1 GAAATTGAAAA
73491080 ACGGAAATTG
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
73 2 0.03
74 42 0.55
75 12 0.16
76 21 0.27
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (75 bp):
GAAATTGAAAATACCTCGACGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTT
TTTGACAACA
Found at i:73491208 original size:74 final size:75
Alignment explanation
Indices: 73491083--73491222 Score: 219
Period size: 74 Copynumber: 1.9 Consensus size: 75
73491073 TTGAAAAACG
* *
73491083 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
73491148 TTTTGACAACA
65 TTTTGACAACA
* * *
73491159 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
73491223 GAAAAAGTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
74 37 0.63
76 22 0.37
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
TTTGACAACA
Found at i:73491421 original size:72 final size:71
Alignment explanation
Indices: 73491287--73491452 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
73491277 TGAACAACGT
* * * *
73491287 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
73491352 GAGTTG
66 GAGTTG
*
73491358 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
73491423 TGAGTTG
65 TGAGTTG
**
73491430 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
73491453 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:73491548 original size:121 final size:126
Alignment explanation
Indices: 73491327--73491574 Score: 355
Period size: 121 Copynumber: 2.0 Consensus size: 126
73491317 GCGTGACCTG
* *
73491327 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
**
73491392 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAA-ACAAAAATT-AAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGAAATT-AAAACACAAAAATTGAAA
* * * *
73491452 AGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-ACATAAACTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
* *
73491514 TG-CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGAAATTAAAACACAAAAATTGAAA
73491574 A
1 A
73491575 TACCTCAGCG
Statistics
Matches: 111, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
120 4 0.04
121 45 0.41
122 27 0.24
123 7 0.06
124 1 0.01
125 27 0.24
ACGTcount: A:0.40, C:0.23, G:0.14, T:0.23
Consensus pattern (126 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGAAATTAAAACACAAAAATTGAAA
Found at i:73491614 original size:72 final size:70
Alignment explanation
Indices: 73491452--73491645 Score: 232
Period size: 72 Copynumber: 2.8 Consensus size: 70
73491442 AAAAATTAAA
* * * *
73491452 AGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAACAAAAACTAAAAATACCTCAGCGT
73491515 GCCCG
66 GCCCG
* * *
73491520 AGGCTCAACTCACTTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAA-ACAAAAACTAAAAATACCTCAGCG
73491585 TGCCCCG
65 TG-CCCG
* * ** *
73491592 AGGCTCAACTCACCTCTAGCAATATGAATTGATTTTGAAAAACCAAAA-TAAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATT-AAAAACAAAAACTAAAAA
73491646 GGCTTAACTC
Statistics
Matches: 107, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
68 26 0.24
69 1 0.01
70 7 0.07
71 28 0.26
72 41 0.38
73 4 0.04
ACGTcount: A:0.40, C:0.24, G:0.13, T:0.23
Consensus pattern (70 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAACAAAAACTAAAAATACCTCAGCGT
GCCCG
Found at i:73491655 original size:193 final size:194
Alignment explanation
Indices: 73491288--73491818 Score: 834
Period size: 193 Copynumber: 2.8 Consensus size: 194
73491278 GAACAACGTA
* * * * * *
73491288 AATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
1 AATTTAAAACATAAACTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACTTCTCGCAATATG
73491353 AGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAG
66 AGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAG
*
73491418 CAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTC
131 CAATATGAGTTGATTTTGAAAAACAAAAATAAAAAGGCTTAACTCACCTCTCGCAATATGAGTC
73491482 AATTTAAAACATAAACTAAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACTTCTCGCAATATG
1 AATTTAAAACATAAACTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACTTCTCGCAATATG
73491546 AGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAG
66 AGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAG
* * * *
73491611 CAATATGAATTGATTTTGAAAAACCAAAATAAAAAGGCTTAACTCACCTCTCGTAGTATGAGTC
131 CAATATGAGTTGATTTTGAAAAACAAAAATAAAAAGGCTTAACTCACCTCTCGCAATATGAGTC
*
73491675 AATTTAAAACATAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATG
1 AATTTAAAACATAAACTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACTTCTCGCAATATG
** * * * * ** * * *
73491740 AGTTGATTTTGAAA-ATAAAAATT-AAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTTTCG
66 AGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAG
73491803 CAATATGAGTTGATTT
131 CAATATGAGTTGATTT
73491819 CCCTTGAAAA
Statistics
Matches: 313, Mismatches: 23, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
192 48 0.15
193 194 0.62
194 71 0.23
ACGTcount: A:0.38, C:0.22, G:0.15, T:0.25
Consensus pattern (194 bp):
AATTTAAAACATAAACTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACTTCTCGCAATATG
AGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAG
CAATATGAGTTGATTTTGAAAAACAAAAATAAAAAGGCTTAACTCACCTCTCGCAATATGAGTC
Found at i:73491758 original size:69 final size:71
Alignment explanation
Indices: 73491645--73491818 Score: 203
Period size: 70 Copynumber: 2.5 Consensus size: 71
73491635 CAAAATAAAA
* * * * * * * *
73491645 AGGCTTAACTCACCTCTCGTAGTATGAG-TCAATTTAAAACAT-AAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACATAAAAATAAAAATACCTCAACGT
73491708 GTCCCG
66 GTCCCG
* *
73491714 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAA-ATAAAAATTAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACATAAAAATAAAAATACCTCAACGT
**
73491778 GTCTTG
66 GTCCCG
73491784 AGGCTCAACTCATCTT-TCGCAATATGAGTTGATTT
1 AGGCTCAACTCA-CTTCTCGCAATATGAGTTGATTT
73491819 CCCTTGAAAA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
69 26 0.29
70 61 0.68
71 3 0.03
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.30
Consensus pattern (71 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACATAAAAATAAAAATACCTCAACGT
GTCCCG
Found at i:73498620 original size:3 final size:3
Alignment explanation
Indices: 73498614--73498645 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
73498604 TAAAAGTATG
73498614 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
73498646 CTACAATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:73499142 original size:13 final size:13
Alignment explanation
Indices: 73499104--73499146 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
73499094 ATGTATATAT
73499104 AAAGAAAGAAAAA
1 AAAGAAAGAAAAA
* * *
73499117 AAA-TAACACAAA
1 AAAGAAAGAAAAA
73499129 AAAGAAAGAAAAA
1 AAAGAAAGAAAAA
73499142 AAAGA
1 AAAGA
73499147 TTCGAAAGAA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
12 9 0.39
13 14 0.61
ACGTcount: A:0.81, C:0.05, G:0.12, T:0.02
Consensus pattern (13 bp):
AAAGAAAGAAAAA
Found at i:73499475 original size:15 final size:15
Alignment explanation
Indices: 73499457--73499491 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
73499447 TTTTTCTTCT
* *
73499457 TTTTTTTGGGTTAGG
1 TTTTTTTGGGGTAAG
73499472 TTTTTTTGGGGTAAG
1 TTTTTTTGGGGTAAG
73499487 TTTTT
1 TTTTT
73499492 CTTTTTCTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.09, C:0.00, G:0.29, T:0.63
Consensus pattern (15 bp):
TTTTTTTGGGGTAAG
Found at i:73499506 original size:16 final size:16
Alignment explanation
Indices: 73499487--73499521 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
73499477 TTGGGGTAAG
73499487 TTTTTCTTT-TTCTTTT
1 TTTTTCTTTGTT-TTTT
73499503 TTTTTCTTTGTTTTTT
1 TTTTTCTTTGTTTTTT
73499519 TTT
1 TTT
73499522 GGGTTAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.89
Consensus pattern (16 bp):
TTTTTCTTTGTTTTTT
Found at i:73502348 original size:2 final size:2
Alignment explanation
Indices: 73502341--73502377 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
73502331 ATTTAATGAA
73502341 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
73502378 GTTGACCATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:73507330 original size:25 final size:22
Alignment explanation
Indices: 73507302--73507365 Score: 74
Period size: 25 Copynumber: 2.7 Consensus size: 22
73507292 ATGATTACTG
73507302 TATATTAGTGTATATATTTTATATA
1 TATATTA-TGTATATATTTT-TA-A
*
73507327 TATATATATGTATATGTTTTTAA
1 TATAT-TATGTATATATTTTTAA
73507350 TATATTTATGTATATA
1 TATA-TTATGTATATA
73507366 CTTATGTAGC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
23 14 0.40
24 3 0.09
25 16 0.46
26 2 0.06
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (22 bp):
TATATTATGTATATATTTTTAA
Found at i:73507340 original size:23 final size:23
Alignment explanation
Indices: 73507314--73507364 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
73507304 TATTAGTGTA
73507314 TATAT-TTTATATATATATATATG
1 TATATGTTTATA-ATATATATATG
* *
73507337 TATATGTTTTTAATATATTTATG
1 TATATGTTTATAATATATATATG
73507360 TATAT
1 TATAT
73507365 ACTTATGTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 20 0.80
24 5 0.20
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (23 bp):
TATATGTTTATAATATATATATG
Found at i:73507489 original size:24 final size:25
Alignment explanation
Indices: 73507448--73507503 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
73507438 TATGTATATC
*
73507448 TATATATTTTTCGTATATAT-TATG-
1 TATATATTTTTCGAATAT-TGTATGT
73507472 TATATATGTTTTC-AATATTGTATGT
1 TATATAT-TTTTCGAATATTGTATGT
73507497 TATATAT
1 TATATAT
73507504 ATTATTGTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 1 0.04
24 15 0.54
25 12 0.43
ACGTcount: A:0.30, C:0.04, G:0.09, T:0.57
Consensus pattern (25 bp):
TATATATTTTTCGAATATTGTATGT
Found at i:73507584 original size:19 final size:19
Alignment explanation
Indices: 73507560--73507596 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
73507550 CTATTTTATA
*
73507560 TATATTTCTAATATCATTG
1 TATATTTCTAACATCATTG
73507579 TATATTTCTAACATCATT
1 TATATTTCTAACATCATT
73507597 ATTATTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.14, G:0.03, T:0.51
Consensus pattern (19 bp):
TATATTTCTAACATCATTG
Found at i:73507685 original size:18 final size:18
Alignment explanation
Indices: 73507664--73507700 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
73507654 ATCATTTCTA
*
73507664 ATATATAATATGTATTTT
1 ATATATAATATATATTTT
*
73507682 ATATATTATATATATTTT
1 ATATATAATATATATTTT
73507700 A
1 A
73507701 ATTTTATTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (18 bp):
ATATATAATATATATTTT
Found at i:73507803 original size:15 final size:16
Alignment explanation
Indices: 73507769--73507804 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
73507759 TTATGTACAT
*
73507769 ATATAAATATTATGTT
1 ATATAAATATTATGTA
73507785 ATATAAATA-TATGTA
1 ATATAAATATTATGTA
73507800 ATATA
1 ATATA
73507805 CTTTTTAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (16 bp):
ATATAAATATTATGTA
Found at i:73507989 original size:37 final size:35
Alignment explanation
Indices: 73507924--73507993 Score: 81
Period size: 37 Copynumber: 1.9 Consensus size: 35
73507914 TTATATATAG
73507924 TATTATTTTCATACATTATCATATTTATTATTATACC
1 TATTATTTTCATA-ATTATCATATTTATT-TTATACC
73507961 TATTATTTTCACT-ATTATCACT-TATTATTTTAT
1 TATTATTTTCA-TAATTATCA-TAT-TTATTTTAT
73507994 TTTAATATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
36 12 0.40
37 17 0.57
38 1 0.03
ACGTcount: A:0.30, C:0.13, G:0.00, T:0.57
Consensus pattern (35 bp):
TATTATTTTCATAATTATCATATTTATTTTATACC
Found at i:73508128 original size:25 final size:24
Alignment explanation
Indices: 73508100--73508155 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
73508090 GTTATATTTT
*
73508100 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
73508125 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
73508148 CACTATTA
1 CACTATTA
73508156 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:73515821 original size:88 final size:89
Alignment explanation
Indices: 73515619--73516016 Score: 400
Period size: 93 Copynumber: 4.4 Consensus size: 89
73515609 GTGACCCGAA
* *
73515619 GCTCAACTCACCTCTCGTAATATGAGTTGA--TTTTTG-CAAAGCATAAATTAAAAAAAAAACAT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAA-CATAAATT--GAAAAAAA-A-
*
73515681 CAATTGAAAATACCTCGGCGTGTGGCCTGAG
61 -AATTGAAAATACCTCAGCGTGT-GCCTGAG
73515712 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAAAAAAAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAAAAAAAAATTG
73515777 AAAATACCTCAGCGTGT-CCTGAG
66 AAAATACCTCAGCGTGTGCCTGAG
* * *
73515800 GCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGGAAAAACA-AAATTTGAAAAACAGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTT-GACAAACATAAA-TTGAAAAA-AAAA
* ** *
73515864 TTTGAAAATACCTCAGCGTGTGAGTCAAG
62 ATTGAAAATACCTCAGCGTGTGCCT-GAG
* * * * * * *
73515893 GCTCAACTCATCACTCACAATATGAGCTGATTTTTTTGA-AACACAGAAATTGAAGAACAGAAAT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAA-ACATAAATTGAA-AAAAAAAAT
* * * *
73515957 GGAAAACACCTTAGC--GT-CTTGAG
64 TGAAAATACCTCAGCGTGTGCCTGAG
* *
73515980 GTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
73516017 TGAAAGATAG
Statistics
Matches: 266, Mismatches: 27, Indels: 30
0.82 0.08 0.09
Matches are distributed among these distances:
87 35 0.13
88 36 0.14
89 12 0.05
90 38 0.14
91 50 0.19
92 14 0.05
93 63 0.24
95 14 0.05
96 4 0.02
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (89 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAAAAAAAAATTG
AAAATACCTCAGCGTGTGCCTGAG
Found at i:73515871 original size:13 final size:14
Alignment explanation
Indices: 73515839--73515871 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
73515829 ATTTTTTTTG
73515839 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
73515853 GAAAAACAGAATTT
1 GAAAAACAAAATTT
73515867 GAAAA
1 GAAAA
73515872 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:73515927 original size:91 final size:88
Alignment explanation
Indices: 73515619--73516036 Score: 396
Period size: 91 Copynumber: 4.6 Consensus size: 88
73515609 GTGACCCGAA
* * * * * * **
73515619 GCTCAACTCACCTCTCGTAATATGAGTTGA--TTTTTGCAAAGCATAAATTAAAAAAAAAACATC
1 GCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAAACAGAAATT----GAAAAACAGA
*
73515682 AATTGAAAATACCTCGGCGTGTGGCCTGAG
62 AATTGAAAATACCTCAGCGTGT-G--TGAG
* * * *
73515712 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAAAA-AAAAATT
1 GCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAAACAGAAATTGAAAAACAGAAATT
*
73515776 GAAAATACCTCAGCGTGTCCTGAG
66 GAAAATACCTCAGCGTGT-GTGAG
* *
73515800 GCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGGAAAAACA-AAATTTGAAAAACAGAA
1 GCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTT-GAAAAACAGAAA-TTGAAAAACAGAA
* *
73515864 TTTGAAAATACCTCAGCGTGTGAGTCAAG
63 ATTGAAAATACCTCAGCGTGT--GT-GAG
* * * * * *
73515893 GCTCAACTCATCACTCACAATATGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAATG
1 GCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAAACAGAAATTGAAAAACAGAAATT
* * *
73515958 GAAAACACCTTAGCGTCT-TGAG
66 GAAAATACCTCAGCGTGTGTGAG
* * *
73515980 GTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTGAAAGATAGAAATTGAAAA
1 GCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTTGAAAAACAGAAATTGAAAA
73516037 TACCTCAACG
Statistics
Matches: 278, Mismatches: 37, Indels: 25
0.82 0.11 0.07
Matches are distributed among these distances:
87 28 0.10
88 57 0.21
89 10 0.04
90 37 0.13
91 63 0.23
92 11 0.04
93 56 0.20
95 16 0.06
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (88 bp):
GCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAAACAGAAATTGAAAAACAGAAATT
GAAAATACCTCAGCGTGTGTGAG
Found at i:73515927 original size:181 final size:180
Alignment explanation
Indices: 73515684--73516018 Score: 460
Period size: 181 Copynumber: 1.9 Consensus size: 180
73515674 AAAACATCAA
* * * * *
73515684 TTGAAAATACCTCGGCGTGTGGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 TTGAAAATACCTCAGCGTGTGGCCTAAGGCTCAACTCACCACTCACAATATGAGCTGATTTTTTT
* * * *
73515749 GACAA-ACATAAATTGAA-AAAAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTGAACTCACC
66 GA-AACACAGAAATTGAAGAAAAAAAATGGAAAACACCTCAGC--GTCCTGAGGCTCAACTCACC
*
73515812 TCTCGCAATATGAGTTGATTTTTTTTGGAAAAACAAAATTTGAAAAACAGAAT
128 TCTCGCAATATGAGCTGATTTTTTTTGGAAAAACAAAATTTGAAAAACAGAAT
* *
73515865 TTGAAAATACCTCAGCGTGTGAGTC-AAGGCTCAACTCATCACTCACAATATGAGCTGATTTTTT
1 TTGAAAATACCTCAGCGTGTG-GCCTAAGGCTCAACTCACCACTCACAATATGAGCTGATTTTTT
* * * * *
73515929 TGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTTAGCGTCTTGAGGTTCAACTCACCTC
65 TGAAACACAGAAATTGAAGAAAAAAAATGGAAAACACCTCAGCGTCCTGAGGCTCAACTCACCTC
73515994 TCGCAATATGAGCTGATTTTTTTTG
130 TCGCAATATGAGCTGATTTTTTTTG
73516019 AAAGATAGAA
Statistics
Matches: 134, Mismatches: 17, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
180 45 0.34
181 68 0.51
182 21 0.16
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (180 bp):
TTGAAAATACCTCAGCGTGTGGCCTAAGGCTCAACTCACCACTCACAATATGAGCTGATTTTTTT
GAAACACAGAAATTGAAGAAAAAAAATGGAAAACACCTCAGCGTCCTGAGGCTCAACTCACCTCT
CGCAATATGAGCTGATTTTTTTTGGAAAAACAAAATTTGAAAAACAGAAT
Found at i:73516284 original size:163 final size:162
Alignment explanation
Indices: 73516034--73516524 Score: 453
Period size: 170 Copynumber: 3.0 Consensus size: 162
73516024 TAGAAATTGA
* * *
73516034 AAATACCTCAACGTGT--CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACT
1 AAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-----T
* ** **
73516097 TAACTTGAAAAGCAGATTTTGAAAATGCCTCGATATGTGACTCAAGGCTCAACTCACCTCTCGCA
61 T--TTTGAAAA-CAGAAATTGAAAATGCCTC-A-GCGTGACTCAAGGCTCAACTCACCTCTCGCA
* **
73516162 ATATGAGTTGATTTTTGAAAAATATAAATTGAAGTA-AAAA-
121 ATATGAGTTGATTTTTGAAAAATAGAAATTGAAAAACAAAAT
* * * *
73516202 AAATTCCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTTTTG
1 AAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTG
*
73516267 AAAGACAGAAATTGAAAATAG-CTCAGCGCGTGAGC-CCAGGCTCAACTCACCTCTCGCAATATG
66 AAA-ACAGAAATTGAAAAT-GCCTCA--GCGTGA-CTCAAGGCTCAACTCACCTCTCGCAATATG
* ***
73516330 AGTCGATTTTTTCGAAAGGCAGAAATTGAAAAACGAAAATT
126 AGTTGA-TTTTT-GAAAAATAGAAATTGAAAAAC-AAAA-T
* * * *
73516371 GAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGA--TTTTTTTT
1 -AAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTT
* * * **
73516434 GAAACACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
65 GAAA-ACAGAAATTGAAAATGCCTCAGCGTGACTCAAGGCTCAACTCACCTCTCGCAATATGAGT
73516499 TGATTTTT-AAAAAGTAGAAATT-AAAA
129 TGATTTTTGAAAAA-TAGAAATTGAAAA
73516525 GGTTCAACCC
Statistics
Matches: 268, Mismatches: 39, Indels: 37
0.78 0.11 0.11
Matches are distributed among these distances:
162 1 0.00
163 64 0.24
164 15 0.06
165 22 0.08
166 36 0.13
167 4 0.01
168 43 0.16
170 83 0.31
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (162 bp):
AAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTG
AAAACAGAAATTGAAAATGCCTCAGCGTGACTCAAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTGAAAAATAGAAATTGAAAAACAAAAT
Found at i:73516428 original size:90 final size:92
Alignment explanation
Indices: 73516275--73516451 Score: 234
Period size: 90 Copynumber: 1.9 Consensus size: 92
73516265 TGAAAGACAG
* * *
73516275 AAATTGAAAATAGCTCAGCGCGTGAGCCCAGGCTCAACTCACCTCTCGCAATATGAGTCGA-TTT
1 AAATTGAAAATACCTCAGCGCGTGAGCCCAGGCTCAACTCACCGCTCGCAATACGAGTCGATTTT
**
73516339 TTTCGAAAGGCAGAAATTGAAAAACGA
66 TTTCGAAACACAGAAATTGAAAAACGA
* * * *
73516366 AAATTG-AAATACCTCAGCGTGTGA-CCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTT
1 AAATTGAAAATACCTCAGCGCGTGAGCC-CAGGCTCAACTCACCGCTCGCAATACGAGTCGATTT
*
73516429 TTTTTGAAACACAGAAATTGAAA
65 TTTTCGAAACACAGAAATTGAAA
73516452 TTACCTCAGC
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
89 2 0.03
90 44 0.59
91 28 0.38
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.24
Consensus pattern (92 bp):
AAATTGAAAATACCTCAGCGCGTGAGCCCAGGCTCAACTCACCGCTCGCAATACGAGTCGATTTT
TTTCGAAACACAGAAATTGAAAAACGA
Found at i:73516574 original size:54 final size:55
Alignment explanation
Indices: 73516474--73516579 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 55
73516464 GTCTTGAGGC
* * *
73516474 TCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* *
73516528 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGTTGATT-TTGAAAAAGCAGAAATTGAAAA
73516580 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 35 0.78
55 10 0.22
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (55 bp):
TCAACCCACCTCTCGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:73516586 original size:13 final size:13
Alignment explanation
Indices: 73516559--73516592 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
73516549 GAGTTGATTC
*
73516559 TTGAACAACATAAA
1 TTGAA-AACAGAAA
73516573 TTGAAAACAGAAA
1 TTGAAAACAGAAA
73516586 TTGAAAA
1 TTGAAAA
73516593 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:73516691 original size:140 final size:141
Alignment explanation
Indices: 73516432--73516692 Score: 436
Period size: 140 Copynumber: 1.9 Consensus size: 141
73516422 TTGATTTTTT
* * *
73516432 TTGAAACACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAACACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
73516497 GTTGATTTTTAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
66 GCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
73516562 AACAACATAAA
131 AACAACATAAA
*
73516573 TTGAAA-ACAGAAATTGAAAATACCTCAGCGTGACCTGGGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAACACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
*
73516637 GCTGATTTTGAAAAAGTAGAAATTAAAAGGCTT-AACTCACCTCTCGCAATATGAGT
66 GCTGATTTTGAAAAAGTAGAAATTAAAAGG-TTCAACCCACCTCTCGCAATATGAGT
73516693 CAATTTAAAA
Statistics
Matches: 112, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
140 104 0.93
141 8 0.07
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (141 bp):
TTGAAACACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
GCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
AACAACATAAA
Found at i:73516793 original size:71 final size:69
Alignment explanation
Indices: 73516664--73516838 Score: 226
Period size: 71 Copynumber: 2.5 Consensus size: 69
73516654 AGAAATTAAA
* * ** * *
73516664 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAATTAAAAATACCTCAGCGTGC
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTAAAACAAAAATTAAAAATACCTCAACGTGC
73516729 CCCG
66 CCCG
*
73516733 AGGCTCAACTCACTTCTTGCAATATGAGTTGATTTCGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTT--AAAACAAAAATTAAAAATACCTCAACGT
* **
73516798 GTCTTG
64 GCCCCG
73516804 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTT
73516839 TCCTTGAAAA
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
69 30 0.33
70 1 0.01
71 61 0.66
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (69 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTAAAACAAAAATTAAAAATACCTCAACGTGC
CCCG
Found at i:73528994 original size:106 final size:106
Alignment explanation
Indices: 73528809--73529127 Score: 457
Period size: 106 Copynumber: 3.0 Consensus size: 106
73528799 AAAATGGAGG
*
73528809 TCCCCAGTGGAGTCGCCAACTGTAGCGATGTAAAAATTATTTAATTTCGCTTTCGGTCGCTAATT
1 TCCCCAGTGGAGTCGCCAACTGTAGCGACGTAAAAATTATTTAATTTCGCTTTCGGTCGCTAATT
73528874 AAGGCGATTATTTGAAAATTTAAACCGACTTTTGATTTTAT
66 AAGGCGATTATTTGAAAATTTAAACCGACTTTTGATTTTAT
*
73528915 TCCCCAGCGGAGTCGCCAACTGTAGCGACGTAAAAATTATTTAATTTCGCTTTCGGTCGCTAATT
1 TCCCCAGTGGAGTCGCCAACTGTAGCGACGTAAAAATTATTTAATTTCGCTTTCGGTCGCTAATT
73528980 AAGGCGATTATTTGAAAATTTAAACCGACTTTTGATTTTAT
66 AAGGCGATTATTTGAAAATTTAAACCGACTTTTGATTTTAT
* * * ** * *
73529021 TCCCCAGTAGAGTCGCTAGCTGTAGCGACGTAAAAAAAAATTAGTTTCGC-TT-GGTCGCTAATT
1 TCCCCAGTGGAGTCGCCAACTGTAGCGACGTAAAAATTATTTAATTTCGCTTTCGGTCGCTAATT
** * *
73529084 GTGGCGATT-TATT-AAACATTTGAAAACCAACTTTCGATTTTAT
66 AAGGCGATTAT-TTGAAA-ATTT--AAACCGACTTTTGATTTTAT
73529127 T
1 T
73529128 AACAAAGGGA
Statistics
Matches: 195, Mismatches: 14, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
103 4 0.02
104 24 0.12
105 2 0.01
106 165 0.85
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (106 bp):
TCCCCAGTGGAGTCGCCAACTGTAGCGACGTAAAAATTATTTAATTTCGCTTTCGGTCGCTAATT
AAGGCGATTATTTGAAAATTTAAACCGACTTTTGATTTTAT
Found at i:73531113 original size:106 final size:106
Alignment explanation
Indices: 73530945--73531138 Score: 252
Period size: 106 Copynumber: 1.8 Consensus size: 106
73530935 TCCCTTTGTT
* *
73530945 AATAAAATCGAAAGTTGGTTTTCAAATGTTTAATAAATCGCCACAATTAGCGACCAAGCGAAACT
1 AATAAAATCAAAAGTCGGTTTTCAAATGTTTAATAAATCGCCACAATTAGCGACCAAGCGAAACT
* **
73531010 AATTTTTTTTTACGTCGCTACAGCTGGCGACTCCACTGGGG
66 AAATAATTTTTACGTCGCTACAGCTGGCGACTCCACTGGGG
**
73531051 AATAAAATCAAAAGTCGG-TTT-AAAT-TTTCAA-ATAATCGCCTTAATTAGCGACCGAAAGCGA
1 AATAAAATCAAAAGTCGGTTTTCAAATGTTT-AATA-AATCGCCACAATTAGCGACC--AAGCGA
*
73531112 AATTAAATAATTTTTACGTCGCTACAG
62 AACTAAATAATTTTTACGTCGCTACAG
73531139 ACCCATCACC
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
103 4 0.05
104 24 0.32
105 3 0.04
106 45 0.59
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.29
Consensus pattern (106 bp):
AATAAAATCAAAAGTCGGTTTTCAAATGTTTAATAAATCGCCACAATTAGCGACCAAGCGAAACT
AAATAATTTTTACGTCGCTACAGCTGGCGACTCCACTGGGG
Found at i:73538967 original size:25 final size:23
Alignment explanation
Indices: 73538915--73538969 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
73538905 TATAAATAGT
73538915 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
73538938 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
73538963 AATAGTG
1 AATAGTG
73538970 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:73541276 original size:28 final size:27
Alignment explanation
Indices: 73541224--73541276 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
73541214 CTATTCAGAA
* *
73541224 ATCAGTGTTAACTAGGCCTTAGCCCAT
1 ATCAGTATTAACTAGGCCATAGCCCAT
*
73541251 ATCAGTATTAATCTGGGCCATAGCCC
1 ATCAGTATTAA-CTAGGCCATAGCCC
73541277 CTTACAGTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 10 0.45
28 12 0.55
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (27 bp):
ATCAGTATTAACTAGGCCATAGCCCAT
Found at i:73541361 original size:60 final size:59
Alignment explanation
Indices: 73541238--73541372 Score: 157
Period size: 60 Copynumber: 2.2 Consensus size: 59
73541228 GTGTTAACTA
* *
73541238 GGCCTTAGCCCATATCAGTATTAATCTGGGCCATAGCCCCTTACAGTAACAGAGTATACTG
1 GGCC-TAGCCCATATCAGTATCAATCTGGGCCATAGCCCATTACAGT-ACAGAGTATACTG
* * *
73541299 GGCCTAGCCCATATCAGTATCAATCTGGGTCGTAGCCCTATTACAAGT-C-GAGATATATTG
1 GGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCC-ATTAC-AGTACAGAG-TATACTG
*
73541359 GGCCTTGCCCATAT
1 GGCCTAGCCCATAT
73541373 TAACACAGTT
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
59 3 0.05
60 51 0.78
61 8 0.12
62 3 0.05
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (59 bp):
GGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCCATTACAGTACAGAGTATACTG
Found at i:73541408 original size:19 final size:20
Alignment explanation
Indices: 73541365--73541420 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
73541355 ATTGGGCCTT
73541365 GCCCATATTAACACAGTTGG
1 GCCCATATTAACACAGTTGG
* *
73541385 GCCCATTTTAATACAGTT-G
1 GCCCATATTAACACAGTTGG
* *
73541404 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
73541421 CTCATATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Found at i:73543615 original size:23 final size:25
Alignment explanation
Indices: 73543560--73543616 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 25
73543550 TGAAAATTTC
73543560 AAATACAATAATATATATATGTTCCT
1 AAAT-CAATAATATATATATGTTCCT
73543586 -AAT-AATAAT-TATA-AT-TTCCAT
1 AAATCAATAATATATATATGTTCC-T
73543607 AAATCAATAA
1 AAATCAATAA
73543617 AAATAGATAC
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
20 4 0.14
21 3 0.11
22 7 0.25
23 11 0.39
25 3 0.11
ACGTcount: A:0.51, C:0.11, G:0.02, T:0.37
Consensus pattern (25 bp):
AAATCAATAATATATATATGTTCCT
Found at i:73544114 original size:93 final size:93
Alignment explanation
Indices: 73544001--73544171 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
73543991 GCCCCTAAGT
* * *
73544001 GAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACACAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73544066 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
73544094 GAACTCGGACTCAACACAACGAGTTCGGACATTCGCATCCTTAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACACAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73544159 CGAGTTCGGATGC
66 CGAGTTCGGATGC
73544172 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACACAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:73544168 original size:46 final size:46
Alignment explanation
Indices: 73543996--73544168 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
73543986 AACCCGCCCC
* * * * *
73543996 TAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCT
*
73544042 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCT
* * *
73544090 TCA-CGAACTCGGACTCAACACAACGAGTTCGGACATTCGCATCCT
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCT
73544135 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73544169 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 3 0.03
46 59 0.56
47 28 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCT
Found at i:73545510 original size:13 final size:14
Alignment explanation
Indices: 73545484--73545524 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
73545474 ATAACATTAA
73545484 AATAAATATAATAT
1 AATAAATATAATAT
73545498 -ATAAA-ATACATAT
1 AATAAATATA-ATAT
73545511 AATAAATCATAATA
1 AATAAAT-ATAATA
73545525 ATATAAAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
12 3 0.13
13 9 0.39
14 5 0.22
15 3 0.13
16 3 0.13
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (14 bp):
AATAAATATAATAT
Found at i:73545528 original size:18 final size:17
Alignment explanation
Indices: 73545481--73545530 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
73545471 CTAATAACAT
*
73545481 TAAAATAAATATAATATA
1 TAAAAT-AATATAATAAA
73545499 TAAAATACATATAATAAA
1 TAAAATA-ATATAATAAA
*
73545517 TCATAATAATATAA
1 T-AAAATAATATAA
73545531 AAACTATTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 1 0.04
18 22 0.79
19 5 0.18
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (17 bp):
TAAAATAATATAATAAA
Found at i:73545569 original size:18 final size:18
Alignment explanation
Indices: 73545503--73545569 Score: 52
Period size: 18 Copynumber: 3.7 Consensus size: 18
73545493 AATATATAAA
73545503 ATACATATA-ATAAAT-C
1 ATACATATATATAAATAC
*
73545519 ATA-ATA-ATATAAAAAC
1 ATACATATATATAAATAC
*
73545535 TATTCATACGCTATATAAATAC
1 -ATACATA---TATATAAATAC
73545557 ATACATATATATA
1 ATACATATATATA
73545570 TAAATAATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
14 1 0.03
15 8 0.21
16 4 0.10
17 2 0.05
18 9 0.23
21 6 0.15
22 9 0.23
ACGTcount: A:0.54, C:0.12, G:0.01, T:0.33
Consensus pattern (18 bp):
ATACATATATATAAATAC
Found at i:73545602 original size:19 final size:19
Alignment explanation
Indices: 73545578--73545614 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
73545568 TATAAATAAT
*
73545578 AATGATGTTAGAAATATAC
1 AATGATATTAGAAATATAC
73545597 AATGATATTAGAAATATA
1 AATGATATTAGAAATATA
73545615 TATAAAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.14, T:0.32
Consensus pattern (19 bp):
AATGATATTAGAAATATAC
Found at i:73545712 original size:24 final size:24
Alignment explanation
Indices: 73545671--73545726 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
73545661 ACACAATAAT
*
73545671 ATATATAACATACAATAT-TGAAAA
1 ATATAT-ACATACAATATACGAAAA
73545695 CATATATACATA-ATATATACGAAAA
1 -ATATATACATACA-ATATACGAAAA
73545720 ATATATA
1 ATATATA
73545727 GATATACATA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 1 0.04
24 16 0.57
25 11 0.39
ACGTcount: A:0.57, C:0.09, G:0.04, T:0.30
Consensus pattern (24 bp):
ATATATACATACAATATACGAAAA
Found at i:73545751 original size:30 final size:30
Alignment explanation
Indices: 73545698--73545772 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
73545688 TTGAAAACAT
*
73545698 ATATACATAATATATACGAAAAATATATAG
1 ATATACATAATATATACGAAAAATATATAC
** *
73545728 ATATACATAATATAATA-TTAAAATATTTAC
1 ATATACATAATAT-ATACGAAAAATATATAC
73545758 ATAATACATAA-ATAT
1 AT-ATACATAATATAT
73545773 TAGGGATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
29 2 0.05
30 26 0.67
31 11 0.28
ACGTcount: A:0.56, C:0.07, G:0.03, T:0.35
Consensus pattern (30 bp):
ATATACATAATATATACGAAAAATATATAC
Found at i:73545853 original size:17 final size:17
Alignment explanation
Indices: 73545833--73545866 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
73545823 TATTAAAAAC
73545833 ATATACA-TATATATATA
1 ATATACACTA-ATATATA
73545850 ATATACACTAATATATA
1 ATATACACTAATATATA
73545867 GTAATCATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.88
18 2 0.12
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (17 bp):
ATATACACTAATATATA
Found at i:73550638 original size:37 final size:39
Alignment explanation
Indices: 73550596--73550668 Score: 123
Period size: 37 Copynumber: 1.9 Consensus size: 39
73550586 TGAATCAAAT
*
73550596 TTAATTGGTTCATGTAA-CAAAAA-AAAAAAAGAGTGAA
1 TTAATTGGCTCATGTAACCAAAAAGAAAAAAAGAGTGAA
73550633 TTAATTGGCTCATGTAACCAAAAAGAAAAAAAGAGT
1 TTAATTGGCTCATGTAACCAAAAAGAAAAAAAGAGT
73550669 TAATGGTTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
37 16 0.48
38 6 0.18
39 11 0.33
ACGTcount: A:0.52, C:0.08, G:0.16, T:0.23
Consensus pattern (39 bp):
TTAATTGGCTCATGTAACCAAAAAGAAAAAAAGAGTGAA
Found at i:73564213 original size:2 final size:2
Alignment explanation
Indices: 73564206--73564238 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
73564196 AGTTATTTTA
73564206 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
73564239 AACATACCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:73565753 original size:26 final size:26
Alignment explanation
Indices: 73565724--73565775 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
73565714 ATATAATTTC
*
73565724 CAAATCATGTACCTATATATCATGTA
1 CAAATCATGTACATATATATCATGTA
* * *
73565750 CAAATCATTTTCATATATCTCATGTA
1 CAAATCATGTACATATATATCATGTA
73565776 AATACCTATG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.37, C:0.19, G:0.06, T:0.38
Consensus pattern (26 bp):
CAAATCATGTACATATATATCATGTA
Found at i:73565975 original size:25 final size:25
Alignment explanation
Indices: 73565916--73566002 Score: 68
Period size: 25 Copynumber: 3.5 Consensus size: 25
73565906 GTATACATAT
* * *
73565916 GCTCATAAGAGCTGTA-AACGGTAA
1 GCTCATACGAGCTGAATAACGATAA
* * * * *
73565940 ACTCCTCCGAGCTGAATAATGGTAA
1 GCTCATACGAGCTGAATAACGATAA
* *
73565965 TCTCATACGAGCTGAGTAACGATAA
1 GCTCATACGAGCTGAATAACGATAA
*
73565990 GCTCATAAGAGCT
1 GCTCATACGAGCT
73566003 AAAATCGGTA
Statistics
Matches: 48, Mismatches: 14, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
24 11 0.23
25 37 0.77
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (25 bp):
GCTCATACGAGCTGAATAACGATAA
Found at i:73571890 original size:2 final size:2
Alignment explanation
Indices: 73571883--73571908 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
73571873 AATATTTTAA
73571883 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
73571909 TAAAGAAGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73576048 original size:23 final size:23
Alignment explanation
Indices: 73576022--73576073 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
73576012 TTCTTGGTTT
73576022 TTTTTTGGGGGGTTA-GATTTTTC
1 TTTTTT-GGGGGTTAGGATTTTTC
** *
73576045 TTTTTTTTGGGTTAGGTTTTTTC
1 TTTTTTGGGGGTTAGGATTTTTC
73576068 TTTTTT
1 TTTTTT
73576074 TTTTTTGGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 6 0.24
23 19 0.76
ACGTcount: A:0.06, C:0.04, G:0.23, T:0.67
Consensus pattern (23 bp):
TTTTTTGGGGGTTAGGATTTTTC
Found at i:73576056 original size:22 final size:23
Alignment explanation
Indices: 73576031--73576075 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
73576021 TTTTTTTGGG
73576031 GGGTTA-GATTTTTCTTTTTTTT
1 GGGTTAGGATTTTTCTTTTTTTT
*
73576053 GGGTTAGGTTTTTTCTTTTTTTT
1 GGGTTAGGATTTTTCTTTTTTTT
73576076 TTTTGGTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.07, C:0.04, G:0.20, T:0.69
Consensus pattern (23 bp):
GGGTTAGGATTTTTCTTTTTTTT
Found at i:73576074 original size:26 final size:25
Alignment explanation
Indices: 73576039--73576098 Score: 93
Period size: 26 Copynumber: 2.4 Consensus size: 25
73576029 GGGGGTTAGA
*
73576039 TTTTTCTTTTTTTTGGGTTAGGTTT
1 TTTTTTTTTTTTTTGGGTTAGGTTT
*
73576064 TTTCTTTTTTTTTTTTGGTTAGGTTT
1 TTT-TTTTTTTTTTTGGGTTAGGTTT
73576090 TTTTTTTTT
1 TTTTTTTTT
73576099 GGGAGGGCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
25 9 0.28
26 23 0.72
ACGTcount: A:0.03, C:0.03, G:0.15, T:0.78
Consensus pattern (25 bp):
TTTTTTTTTTTTTTGGGTTAGGTTT
Found at i:73576093 original size:22 final size:22
Alignment explanation
Indices: 73576031--73576098 Score: 73
Period size: 26 Copynumber: 2.9 Consensus size: 22
73576021 TTTTTTTGGG
* *
73576031 GGGTTAGATTTTTCTTTTTTTT
1 GGGTTAGGTTTTTTTTTTTTTT
73576053 GGGTTAGGTTTTTTCTTTTTTTTTTT
1 GGGTTAGG---TTT-TTTTTTTTTTT
*
73576079 TGGTTAGGTTTTTTTTTTTT
1 GGGTTAGGTTTTTTTTTTTT
73576099 GGGAGGGCTT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
22 16 0.41
23 3 0.08
25 3 0.08
26 17 0.44
ACGTcount: A:0.06, C:0.03, G:0.19, T:0.72
Consensus pattern (22 bp):
GGGTTAGGTTTTTTTTTTTTTT
Found at i:73577095 original size:72 final size:73
Alignment explanation
Indices: 73576858--73577454 Score: 572
Period size: 72 Copynumber: 7.8 Consensus size: 73
73576848 AGTGTGTGAT
* * *
73576858 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTTGAAAGACAGAAATTGAAA
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA------TATTTTGAAA-ACAGAAATTGAAA
*
73576923 ATACCTCAGCATGTGAAC
59 ATACCTCAGC--GTG-TC
* * *
73576941 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTTGAAAACAGAAATTGAAAAT
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA-----TATTTTGAAAACAGAAATTGAAAAT
*
73577005 ACCTCAACGTGTC
61 ACCTCAGCGTGTC
* * * * * *
73577018 TTGAGGCTCAACTCATTTCTTGCAATATGAGTTGA-ATTTTGAAAATAGAAATTGAAATTACCTT
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATATTTTGAAAACAGAAATTGAAAATACCTC
73577082 AGCGTGTC
66 AGCGTGTC
* * *
73577090 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAATA
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA----TATTTTGAAAACAGAAATTGAAAATA
*
73577155 CCTCAACGTGTC
62 CCTCAGCGTGTC
* * *
73577167 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTC
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATATTTTGAAAACAGAAATTGAAAATACCTC
73577231 AGCGTGTC
66 AGCGTGTC
* * * * *
73577239 CCGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTTTTTGAAAGACAAAAATTGAAAA
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA-----TATTTTGAAA-ACAGAAATTGAAAA
*
73577304 TACCTCAGCATGTC
60 TACCTCAGCGTGTC
* * * * *
73577318 TTGAGGCTCAACTCATTTCTCGCAATATGA-TTGATTTTTTTTTTGACAACAGAAATTGAAATTA
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA----TATTTTGAAAACAGAAATTGAAAATA
73577382 CCTCAGCGTGTC
62 CCTCAGCGTGTC
* * *
73577394 CTGAGGCTCCACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAA
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA-TATTTTGAAA-ACAGAAATTGAAAA
73577455 ACGGAAATTG
Statistics
Matches: 444, Mismatches: 55, Indels: 38
0.83 0.10 0.07
Matches are distributed among these distances:
72 126 0.28
74 10 0.02
75 13 0.03
76 51 0.11
77 81 0.18
78 44 0.10
79 50 0.11
80 22 0.05
81 15 0.03
82 31 0.07
83 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (73 bp):
CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATATTTTGAAAACAGAAATTGAAAATACCTC
AGCGTGTC
Found at i:73577453 original size:14 final size:14
Alignment explanation
Indices: 73577434--73577468 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
73577424 GTTGATTTTT
*
73577434 TTGAAAGACAGAAA
1 TTGAAAAACAGAAA
*
73577448 TTGAAAAACGGAAA
1 TTGAAAAACAGAAA
73577462 TTGAAAA
1 TTGAAAA
73577469 TACCTCGGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:73577522 original size:91 final size:89
Alignment explanation
Indices: 73577369--73577545 Score: 248
Period size: 91 Copynumber: 2.0 Consensus size: 89
73577359 TTTGACAACA
* * * *
73577369 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCCACTCACCTCTCGCAATATGAGTTGA-TTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
73577433 TTTGAAAGACAGAAATTGAAAAACG
66 TTTGAAA-ACAGAAATTGAAAAACG
* *
73577458 GAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT--CCTAAGGCTCAACTCACCTCTCGCAATACGAGTTGA-TT
*
73577523 TTTTTTGACAACAGAAATTGAAA
63 TTTTTTGAAAACAGAAATTGAAA
73577546 TTACTTCAGC
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
89 22 0.29
91 32 0.42
92 13 0.17
93 10 0.13
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.28
Consensus pattern (89 bp):
GAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
TTTGAAAACAGAAATTGAAAAACG
Found at i:73577568 original size:167 final size:161
Alignment explanation
Indices: 73577133--73578197 Score: 910
Period size: 167 Copynumber: 6.9 Consensus size: 161
73577123 GATTTTTTTT
* * * **
73577133 TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAAC-GAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * *
73577198 TTGA---ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTT
65 TTGATTTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
****
73577260 GCAATATGAGTTGATTTTTTT---TTTTGAAA
130 GCAATATGAGTTGATTTTTTTGAAAACAGAAA
* * **
73577289 --GACAA--AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA-T
1 TTGAAAACGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
73577349 TGATTTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCCACTCACCTCT
66 TGA--TTTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
73577414 CGCAATATGAGTTGATTTTTTTGAAAGACAGAAA
129 CGCAATATGAGTTGATTTTTTTGAAA-ACAGAAA
* * * * *
73577448 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACTCGCCTCTCGCAATAC
1 TTG-AAAAC-GAAATTGAAAATACCTCAGCATGT--CCTGAGGCTCAACTCACCTCTCGCAATAT
* * * **
73577513 GAGTTGATTTTTTTTTGACAACAGAAATTGAAATTACTTCAGCGTGTCCTGAGGCTCAACTCATT
62 GAGTTGA-TTTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
*
73577578 TCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAA
126 TCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAA
*
73577612 TT------GAAA-T-----TACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TTGAAAACGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * **
73577665 TGA-TTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTC
66 TGATTTTTTTTGAAA-ACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
* ***
73577729 GCAATATGAGTTAATTTTTTT--------TTT
130 GCAATATGAGTTGATTTTTTTGAAAACAGAAA
* * ** *
73577753 TTGACAACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAG
1 TTGAAAAC-GAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
73577818 TTGATTTTTTTT-AAAATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
65 TTGATTTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
*
73577882 GCAATATAAGTTGATTTTTTTGAAAAC-----
130 GCAATATGAGTTGATTTTTTTGAAAACAGAAA
* * * **
73577909 ------A-GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 TTGAAAACGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * **
73577967 TGA---ATTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCG
66 TGATTTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
*
73578029 CAATATGAGTTGA--ATTTTGAAAACAGAAA
131 CAATATGAGTTGATTTTTTTGAAAACAGAAA
* * * **
73578058 TT------GAAA-T-----TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 TTGAAAACGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
73578111 TGAATTTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCA
66 TG-A--TTTTTTTTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCA
* *
73578175 CCTCTTGCAATATGAGCTGATTT
124 CCTCTCGCAATATGAGTTGATTT
73578198 GAAAAGTAGA
Statistics
Matches: 769, Mismatches: 79, Indels: 123
0.79 0.08 0.13
Matches are distributed among these distances:
141 2 0.00
144 58 0.08
145 5 0.01
146 70 0.09
147 57 0.07
148 89 0.12
149 6 0.01
150 28 0.04
151 74 0.10
153 94 0.12
154 53 0.07
155 82 0.11
156 4 0.01
159 4 0.01
161 1 0.00
162 3 0.00
164 9 0.01
165 29 0.04
167 97 0.13
168 4 0.01
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32
Consensus pattern (161 bp):
TTGAAAACGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTTTGAAAACAGAAA
Found at i:73577854 original size:543 final size:526
Alignment explanation
Indices: 73576858--73578197 Score: 1667
Period size: 543 Copynumber: 2.5 Consensus size: 526
73576848 AGTGTGTGAT
* ******
73576858 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTTTTTTTGAAAGACAGAAATTGAA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACTTGAAA-AC-GAAATTGAA
* *
73576922 AATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTT
64 AATACCTCAGCGTGTG-ACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTTT
* *
73576986 GAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTTGCAATATGAGTT
126 GAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
* * * *
73577051 GAATTTTGAAAATAGAAATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
191 GAATTTTGAAAACAGAAATTGAAATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAAT
* * *
73577116 ATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTC
256 ATGAGTTGA---TTTTTTTGAAAACAAAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTC
73577181 ATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGC
318 ATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGC
* *
73577246 TCAACTCACCTCTTGCAATATGAGTTGATTTTTTTTTTTGAAAGACAAAAATTGAAAATACCTCA
383 TCAACTCACCTCTCGCAATATAAGTTGA--TTTTTTTTTGAAAGACAAAAATTGAAAATACCTCA
* ** * *
73577311 GCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA-TTGATTTTTTTTTTGACAACAGAAATT
446 GCATGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA---TTTTTTTGAAAACAGAAATT
* *
73577375 GAAATTACCTCAGCGTGTC
508 GAAAATACCTCAACGTGTC
* *
73577394 CTGAGGCTCCACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAAACGG
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTTGAAA-AC-----TTG-AAAAC-G
* * * *
73577459 AAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTT
56 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * * *
73577524 TTTTTGACAACAGAAATTGAAATTACTTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATAT
121 TTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATAT
73577589 GAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTC
186 GAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTC
*
73577654 GCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAA
251 GCAATATGAGTTGATTTTTTTGAAA-ACAAAAATTGAAAATACCTCAACATGTCTTGAGGCTCAA
* *
73577719 CTCATTTCTCGCAATATGAGTT-AATTTTTTTTTTTTGACAACAGAAATTGAAATTACCTCAGTG
315 CTCATTTCTCGCAATATGAGTTGAA--------TTTTGAAAACAGAAATTGAAATTACCTCAGCG
* * *
73577783 TGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTTT-AAA-ATAGAAATTGAA
372 TGTCCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAGACAAAAATTGAA
*
73577845 AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACA
437 AATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACA
73577910 GAAATTGAAAATACCTCAACGTGTC
502 GAAATTGAAAATACCTCAACGTGTC
* **
73577935 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAC------A-GAAATTGAAAA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACTTGAAAACGAAATTGAAAA
* * ** *
73577993 TACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA----ATTTTGAAAA
66 TACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAA
73578052 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
131 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA--
* * *
73578117 TTTTTTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTTG
194 ----TTTTGAAA-ACAGAAATTGAAATTACCTCAGCATGT--CCCGAGGCTCAACTCACCTCTCG
*
73578182 CAATATGAGCTGATTT
252 CAATATGAGTTGATTT
73578198 GAAAAGTAGA
Statistics
Matches: 707, Mismatches: 67, Indels: 69
0.84 0.08 0.08
Matches are distributed among these distances:
518 68 0.10
522 30 0.04
524 30 0.04
525 26 0.04
526 1 0.00
527 36 0.05
536 32 0.05
538 2 0.00
539 12 0.02
540 13 0.02
541 125 0.18
543 188 0.27
544 10 0.01
545 65 0.09
546 3 0.00
548 66 0.09
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.32
Consensus pattern (526 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACTTGAAAACGAAATTGAAAA
TACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAA
CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
TTGAAAACAGAAATTGAAATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTGAAAACAAAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCG
CAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCA
CCTCTCGCAATATAAGTTGATTTTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCCTG
AGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAA
CGTGTC
Found at i:73577869 original size:74 final size:74
Alignment explanation
Indices: 73577452--73578197 Score: 876
Period size: 72 Copynumber: 9.9 Consensus size: 74
73577442 CAGAAATTGA
* * * * *
73577452 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACTCGCCTCTCGCAATACGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGT
73577517 TGATTTTTTTTTG
64 TGA--TTTTTTTG
* * * **
73577530 ACAACAGAAATTGAAATTACTTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
73577595 A--ATTTTG
66 ATTTTTTTG
* * *
73577602 AAAACAGAAATTGAAATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
73577667 ATTTTTTTG
66 ATTTTTTTG
* * * **
73577676 AAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAA-ACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
73577741 AATTTTTTTTTTTTG
65 GA-----TTTTTTTG
* * * *
73577756 ACAACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
73577821 ATTTTTTTT
66 ATTTTTTTG
* *
73577830 AAAATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
73577895 ATTTTTTTG
66 ATTTTTTTG
* * **
73577904 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
73577969 A--ATTTTG
66 ATTTTTTTG
* * **
73577976 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
73578041 A--ATTTTG
66 ATTTTTTTG
* * * **
73578048 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
73578113 AATTTTTTTTTTG
66 -A---TTTTTTTG
* *
73578126 AAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTTGCAATATGA
1 AAA-ACAGAAATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
73578190 GCTGATTT
62 GTTGATTT
73578198 GAAAAGTAGA
Statistics
Matches: 592, Mismatches: 58, Indels: 37
0.86 0.08 0.05
Matches are distributed among these distances:
72 206 0.35
73 1 0.00
74 144 0.24
75 56 0.09
76 31 0.05
77 3 0.01
78 33 0.06
79 75 0.13
80 11 0.02
81 31 0.05
82 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32
Consensus pattern (74 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTG
Found at i:73578279 original size:13 final size:13
Alignment explanation
Indices: 73578261--73578285 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73578251 TGAACAACAT
73578261 AAATTGAAAATAG
1 AAATTGAAAATAG
73578274 AAATTGAAAATA
1 AAATTGAAAATA
73578286 CCTCAGCGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (13 bp):
AAATTGAAAATAG
Found at i:73578347 original size:140 final size:140
Alignment explanation
Indices: 73578123--73578802 Score: 1118
Period size: 140 Copynumber: 4.9 Consensus size: 140
73578113 AATTTTTTTT
*
73578123 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTTGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCGCAATA
73578187 TGAGCTGA-TTTG-AAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
62 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
*
73578250 TTGAACAACATAAA
127 TTGAACAACGTAAA
*
73578264 TTGAAAATAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
73578329 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
73578394 ACAACGTAAA
131 ACAACGTAAA
*
73578404 TTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
73578469 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCATCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
73578534 ACAACGTAAA
131 ACAACGTAAA
*
73578544 TTGAAAACAGAAGTTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
73578609 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
73578674 ACAACGTAAA
131 ACAACGTAAA
* * * * *
73578684 TTAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCGACTCACCTTTAGCAATATGAT
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * * * *
73578749 TTGATTTTGAAGAA-CAAAAATAAAAAGGCTT-AACTCACCTCTCGCAATATGAGT
66 CTGATTTTGAAAAAGTAGAAATTAAAAGG-TTCAACCCACCTCTCGCAATATGAGT
73578803 CAATTTAAAA
Statistics
Matches: 512, Mismatches: 23, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
137 3 0.01
138 35 0.07
139 37 0.07
140 431 0.84
141 6 0.01
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.26
Consensus pattern (140 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACGTAAA
Found at i:73578405 original size:54 final size:54
Alignment explanation
Indices: 73578305--73578410 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
73578295 GACCTGAGGC
*
73578305 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* * *
73578359 TCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
73578411 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 32 0.71
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:73578514 original size:280 final size:280
Alignment explanation
Indices: 73578123--73578945 Score: 1150
Period size: 280 Copynumber: 3.0 Consensus size: 280
73578113 AATTTTTTTT
*
73578123 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTTGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTAGCAATA
73578187 TGAGCTGA-TTTG-AAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
62 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
73578250 TTGAACAACATAAATTGAAAATAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACC
127 TTGAACAACATAAATTGAAAATAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACC
*
73578315 TCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATAT
192 TCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATAT
73578380 GAGTTGATTCTTGAACAACGTAAA
257 GAGTTGATTCTTGAACAACGTAAA
* *
73578404 TTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTAGCAATATGAG
*
73578469 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCATCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
* * *
73578534 ACAACGTAAATTGAAAACAGAAGTTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTC
131 ACAACATAAATTGAAAATAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTC
73578599 GCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGT
196 GCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGT
73578664 TGATTCTTGAACAACGTAAA
261 TGATTCTTGAACAACGTAAA
* * * *
73578684 TTAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCGACTCACCTTTAGCAATATGAT
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTAGCAATATGAG
* * * * * *
73578749 TTGATTTTGAAGAA-CAAAAATAAAAAGGCTT-AACTCACCTCTCGCAATATGA---G-----T-
66 CTGATTTTGAAAAAGTAGAAATTAAAAGG-TTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
* * * *
73578803 --C-A-AT---TT-AAAACT----A---AAAATACCTCAGCATGCCCCGAGGCTCAACTCACTTC
130 AACAACATAAATTGAAAA-TAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTC
*
73578853 TCGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGA
194 TCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGA
73578918 GTTGATTCTTG-ACAAACAG-AAA
259 GTTGATTCTTGAAC-AAC-GTAAA
73578940 TTGAAA
1 TTGAAA
73578946 TTACTTCATC
Statistics
Matches: 506, Mismatches: 29, Indels: 39
0.88 0.05 0.07
Matches are distributed among these distances:
255 2 0.00
256 119 0.24
257 1 0.00
262 4 0.01
263 2 0.00
266 1 0.00
267 1 0.00
268 1 0.00
271 1 0.00
276 1 0.00
277 3 0.01
278 35 0.07
279 34 0.07
280 295 0.58
281 6 0.01
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.26
Consensus pattern (280 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTAGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACATAAATTGAAAATAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTC
GCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGT
TGATTCTTGAACAACGTAAA
Found at i:73578545 original size:54 final size:54
Alignment explanation
Indices: 73578445--73578550 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
73578435 GACCTGAGGC
*
73578445 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* * *
73578499 TCAACCCATCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
73578551 CAGAAGTTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 32 0.71
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:73578685 original size:54 final size:53
Alignment explanation
Indices: 73578585--73578689 Score: 149
Period size: 54 Copynumber: 1.9 Consensus size: 53
73578575 GACCTGAGGC
*
73578585 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTAAAAGGT
* *
73578639 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTAAAA
73578690 ACAGAAATTG
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
54 37 0.80
55 5 0.11
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (53 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTAAAAGGT
Found at i:73578987 original size:73 final size:71
Alignment explanation
Indices: 73578895--73579082 Score: 252
Period size: 71 Copynumber: 2.6 Consensus size: 71
73578885 ATTAAAAGGT
* * * * * *
73578895 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACTTCATCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATT-TTGA-AAACAAAAATTGAAAATACCTCAGCGTGA
73578960 CCTGAGGC
64 CCTGAGGC
**
73578968 TCAACTCACCTCTCGCAATATGAGTTGAAATT-AAAACACAAAATTGAAAATACCTCAGCGTGAC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACA-AAAATTGAAAATACCTCAGCGTGAC
73579032 CTGAGGC
65 CTGAGGC
* *
73579039 TCGACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAAT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAAT
73579083 AAAAAGGCTT
Statistics
Matches: 101, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
70 5 0.05
71 61 0.60
72 8 0.08
73 27 0.27
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (71 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTGAAAATACCTCAGCGTGACC
TGAGGC
Found at i:73579171 original size:185 final size:194
Alignment explanation
Indices: 73578809--73579251 Score: 523
Period size: 185 Copynumber: 2.3 Consensus size: 194
73578799 GAGTCAATTT
* * * * *
73578809 AAAACTAAAAATACCTCAGCATGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTG
1 AAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG
* * *
73578874 AAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAA
66 AAAAAG-AGAAATAAAAAGGTTCAACCCACCTCTCGCAATATGAGTTCAATCTTGACAAACA-AA
* * *
73578939 ATTGAAATTACTTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATT-AAA
129 A-T-AAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTGAAA
73579003 ACA
192 ACA
* * *
73579006 CAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCGACTCACCTCTAGCAATATGAGTTGATTTT
1 -AAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* *
73579071 GAAAACA-A-AAATAAAAAGGCTT-AACTCACCTCTCGCAATATGAG-TCAAT-TT-A-AAAC-T
65 GAAAA-AGAGAAATAAAAAGG-TTCAACCCACCTCTCGCAATATGAGTTCAATCTTGACAAACAA
* **
73579128 AA-AAA-TACCTCAGCGTG-CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAA
128 AATAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTGAAAA
73579190 CA
193 CA
* * * * *
73579192 ACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA
1 AAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
73579252 GTTTCCTTGA
Statistics
Matches: 215, Mismatches: 27, Indels: 19
0.82 0.10 0.07
Matches are distributed among these distances:
185 88 0.41
186 16 0.07
187 3 0.01
190 2 0.01
192 4 0.02
193 1 0.00
194 2 0.01
195 3 0.01
196 31 0.14
197 3 0.01
198 61 0.28
199 1 0.00
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (194 bp):
AAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG
AAAAAGAGAAATAAAAAGGTTCAACCCACCTCTCGCAATATGAGTTCAATCTTGACAAACAAAAT
AAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTGAAAACA
Found at i:73588680 original size:25 final size:27
Alignment explanation
Indices: 73588639--73588701 Score: 85
Period size: 26 Copynumber: 2.4 Consensus size: 27
73588629 GGTTTCTTGG
73588639 TTTTTTTTTTTGGGGGTTA-AATTTTTC
1 TTTTTTTTTTT-GGGGTTAGAATTTTTC
**
73588666 TTTTTTTTTTT-GGGTTAGGTTTTTTC
1 TTTTTTTTTTTGGGGTTAGAATTTTTC
73588692 TTTTTTTTTT
1 TTTTTTTTTT
73588702 GGTTAGGTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
25 6 0.18
26 16 0.48
27 11 0.33
ACGTcount: A:0.06, C:0.03, G:0.16, T:0.75
Consensus pattern (27 bp):
TTTTTTTTTTTGGGGTTAGAATTTTTC
Found at i:73588716 original size:26 final size:26
Alignment explanation
Indices: 73588660--73588714 Score: 96
Period size: 24 Copynumber: 2.2 Consensus size: 26
73588650 GGGGGTTAAA
73588660 TTTTTCTTTTTTTTTTTGGGTTAGGT
1 TTTTTCTTTTTTTTTTTGGGTTAGGT
73588686 TTTTTC-TTTTTTTTTT-GGTTAGGT
1 TTTTTCTTTTTTTTTTTGGGTTAGGT
73588710 TTTTT
1 TTTTT
73588715 TTTGGGGGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 13 0.45
25 10 0.34
26 6 0.21
ACGTcount: A:0.04, C:0.04, G:0.16, T:0.76
Consensus pattern (26 bp):
TTTTTCTTTTTTTTTTTGGGTTAGGT
Found at i:73594066 original size:23 final size:23
Alignment explanation
Indices: 73594036--73594082 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
73594026 ATGATAAAGT
*
73594036 AAACCCAATTGGATTTGTCATCA
1 AAACCCAATCGGATTTGTCATCA
73594059 AAACCCAATCGGATTTGTCATCA
1 AAACCCAATCGGATTTGTCATCA
73594082 A
1 A
73594083 CCGCAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (23 bp):
AAACCCAATCGGATTTGTCATCA
Found at i:73597091 original size:4 final size:4
Alignment explanation
Indices: 73597077--73597106 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
73597067 ATAAAGTGAA
73597077 AAAG AAAAG AAAG AAAG AAAG AAAG AAAG A
1 AAAG -AAAG AAAG AAAG AAAG AAAG AAAG A
73597107 GGATACCCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:73603514 original size:18 final size:19
Alignment explanation
Indices: 73603493--73603533 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
73603483 TTTGAGTTTG
*
73603493 AATCATAGTTGTA-AAAAA
1 AATCATAATTGTACAAAAA
73603511 AATCATAATTGTACAAAAA
1 AATCATAATTGTACAAAAA
73603530 AATC
1 AATC
73603534 CCTTAAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.56, C:0.10, G:0.07, T:0.27
Consensus pattern (19 bp):
AATCATAATTGTACAAAAA
Found at i:73604135 original size:25 final size:26
Alignment explanation
Indices: 73604108--73604167 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
73604098 AAATTTTCTT
73604108 AAATATTTA-CCGGGGTAAAATTGTTA
1 AAAT-TTTATCCGGGGTAAAATTGTTA
* * *
73604134 AAATTTTATCGGGGGTAAAATCGTCA
1 AAATTTTATCCGGGGTAAAATTGTTA
73604160 AAATTTTA
1 AAATTTTA
73604168 CTGGAGTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
25 4 0.13
26 26 0.87
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.35
Consensus pattern (26 bp):
AAATTTTATCCGGGGTAAAATTGTTA
Found at i:73604610 original size:17 final size:17
Alignment explanation
Indices: 73604590--73604623 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
73604580 TCTTTTAAAA
73604590 AAGAGAGAATTTTTGTT
1 AAGAGAGAATTTTTGTT
73604607 AAGAGAGAATTTTTGTT
1 AAGAGAGAATTTTTGTT
73604624 TTCACCCCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.24, T:0.41
Consensus pattern (17 bp):
AAGAGAGAATTTTTGTT
Found at i:73606367 original size:8 final size:8
Alignment explanation
Indices: 73606354--73606379 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
73606344 GGATAATGCT
73606354 ATTACGAA
1 ATTACGAA
73606362 ATTACGAA
1 ATTACGAA
73606370 ATTACGAA
1 ATTACGAA
73606378 AT
1 AT
73606380 CTTAACCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.27
Consensus pattern (8 bp):
ATTACGAA
Found at i:73613329 original size:35 final size:34
Alignment explanation
Indices: 73613289--73613367 Score: 88
Period size: 34 Copynumber: 2.3 Consensus size: 34
73613279 AATAAATGAA
*
73613289 AAGCATGATT-TTTGGCTACTGAGTTGATCTATTAT
1 AAGCAT-ATTATTT-GCTACTGAGTTGAACTATTAT
* ** *
73613324 AAGCATATTATTTGCTATTGTTTTGAACTGTTAT
1 AAGCATATTATTTGCTACTGAGTTGAACTATTAT
73613358 AAGCATATTA
1 AAGCATATTA
73613368 ATTCCTATTG
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
34 29 0.76
35 9 0.24
ACGTcount: A:0.29, C:0.10, G:0.16, T:0.44
Consensus pattern (34 bp):
AAGCATATTATTTGCTACTGAGTTGAACTATTAT
Found at i:73613359 original size:34 final size:34
Alignment explanation
Indices: 73613320--73613389 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 34
73613310 AGTTGATCTA
* * *
73613320 TTATAAGCATATTATTTGCTATTGTTTTGAACTG
1 TTATAAGCATATTAATTCCTATTGTATTGAACTG
*
73613354 TTATAAGCATATTAATTCCTATTGTATTGATCTG
1 TTATAAGCATATTAATTCCTATTGTATTGAACTG
73613388 TT
1 TT
73613390 CGAGCTTGCC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.27, C:0.10, G:0.13, T:0.50
Consensus pattern (34 bp):
TTATAAGCATATTAATTCCTATTGTATTGAACTG
Found at i:73616030 original size:20 final size:20
Alignment explanation
Indices: 73616006--73616044 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
73615996 TTTCAAAATT
*
73616006 AAAAATTATTAAAAGTAATAG
1 AAAAA-TATAAAAAGTAATAG
*
73616027 AAAAATATAAAAATTAAT
1 AAAAATATAAAAAGTAAT
73616045 TAATTTCTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (20 bp):
AAAAATATAAAAAGTAATAG
Found at i:73617792 original size:2 final size:2
Alignment explanation
Indices: 73617787--73617822 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
73617777 GTTTTTTAAG
73617787 AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
73617823 AAATATGAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73617828 original size:15 final size:15
Alignment explanation
Indices: 73617795--73617828 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
73617785 AGATATATAT
**
73617795 ATATATATATATATT
1 ATATATATATATAAA
73617810 ATATATATATATAAA
1 ATATATATATATAAA
73617825 ATAT
1 ATAT
73617829 GAACAAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATATATATATATAAA
Found at i:73618501 original size:13 final size:13
Alignment explanation
Indices: 73618457--73618518 Score: 56
Period size: 13 Copynumber: 4.8 Consensus size: 13
73618447 ATTTAATAAT
*
73618457 ATTTTAATTGATA
1 ATTTTAATTTATA
* *
73618470 ATTTTTAAAATTATT
1 A-TTTT-AATTTATA
73618485 ATTTTAATTTATA
1 ATTTTAATTTATA
73618498 ATTTTAA-TTA-A
1 ATTTTAATTTATA
*
73618509 ATTTTTATTT
1 ATTTTAATTT
73618519 CAAATTTATC
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
11 7 0.17
12 5 0.12
13 14 0.35
14 8 0.20
15 6 0.15
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (13 bp):
ATTTTAATTTATA
Found at i:73623629 original size:234 final size:224
Alignment explanation
Indices: 73623296--73623760 Score: 571
Period size: 234 Copynumber: 2.0 Consensus size: 224
73623286 TCTCATTGGA
*
73623296 AAAGGATGTAGCGACGTAAAATTTACTTGATCGCTAATTGTGGCGATTTATTAAGAAACTTGGAA
1 AAAGG-TGTAGCGACGTAAAATTTACTTGATCGCTAATTGTGGCGATTTATTAAGAAACTTGAAA
* * * *
73623361 ATTGAAAGTTGATTTTAAAATAAACTGGGAGTCGCCACCGAT-CTTTTTTTAAGGTGTGATCGGA
65 ACTGAAAGTTGATTTCAAAATAAACAGGGAGTCGCCACCGATCCTTTTTAT-AGGTGTGATCGGA
** *
73623425 CACCCATTAGATTCCTTTATTTTTAAAACAAAATGAAGGATAAGTTTAGGTCCACG-TCAAATCC
129 CA-CC--TA-ATAACTTTATTTTTAAAACAAAA-GAAGGATAAGTTTAGGTCCACGCTAAAAT--
* *
73623489 CAGAGACAAATTAGGGTTCGGGAGTCGGTTACGCGCGAG
187 CAGAG-CAAAGTAGGGTCCGGGAGTCGGTTACGCGCGAG
* * * *
73623528 GAAGGTGTAGCGACGTAAAAATTTGCTTTCGGTCGCTAATTGTGGCTG-TTTATTGA-AAACTTG
1 AAAGGTGTAGCGACGT-AAAATTTAC-TT-GATCGCTAATTGTGGC-GATTTATTAAGAAACTTG
*
73623591 AAAACTG-AAGTTTGATTTCAAAATAAAGAGAGGAGTCGCCACCGATCCTTTTTATAGGTGTGAT
62 AAAACTGAAAG-TTGATTTCAAAATAAACAG-GGAGTCGCCACCGATCCTTTTTATAGGTGTGAT
* * * * *
73623655 CGGACACCTAATAAGTTTATTTTTAAAACAAAAGGAGGCTGAGTTTAGGTCTACGCTAAAATCAG
125 CGGACACCTAATAACTTTATTTTTAAAACAAAAGAAGGATAAGTTTAGGTCCACGCTAAAATCAG
73623720 AGCAAAGTAGGGTCCGGGAGTCGGTTACGCGCGAG
190 AGCAAAGTAGGGTCCGGGAGTCGGTTACGCGCGAG
73623755 AAAGGT
1 AAAGGT
73623761 ATTAGCACCC
Statistics
Matches: 204, Mismatches: 21, Indels: 21
0.83 0.09 0.09
Matches are distributed among these distances:
227 36 0.18
228 5 0.02
229 18 0.09
230 25 0.12
231 13 0.06
232 15 0.07
233 32 0.16
234 52 0.25
235 8 0.04
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.29
Consensus pattern (224 bp):
AAAGGTGTAGCGACGTAAAATTTACTTGATCGCTAATTGTGGCGATTTATTAAGAAACTTGAAAA
CTGAAAGTTGATTTCAAAATAAACAGGGAGTCGCCACCGATCCTTTTTATAGGTGTGATCGGACA
CCTAATAACTTTATTTTTAAAACAAAAGAAGGATAAGTTTAGGTCCACGCTAAAATCAGAGCAAA
GTAGGGTCCGGGAGTCGGTTACGCGCGAG
Found at i:73624317 original size:2 final size:2
Alignment explanation
Indices: 73624310--73624334 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
73624300 CGTACATAGA
73624310 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
73624335 AAATATTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:73625148 original size:22 final size:24
Alignment explanation
Indices: 73625066--73625148 Score: 68
Period size: 22 Copynumber: 3.5 Consensus size: 24
73625056 TAGTATTAGA
73625066 AATAATATAGTATAAAGATATATA-ACT
1 AATAATATA-TAT-AA-ATATATACA-T
*
73625093 GATAATAT-TA-AAATATATACAT
1 AATAATATATATAAATATATACAT
* *
73625115 AATATTATATATAAAT-TATTCAT
1 AATAATATATATAAATATATACAT
73625138 -ATAATATATAT
1 AATAATATATAT
73625149 TAAAAAATTA
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
22 24 0.50
23 11 0.23
24 4 0.08
25 2 0.04
27 7 0.15
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.40
Consensus pattern (24 bp):
AATAATATATATAAATATATACAT
Found at i:73625348 original size:3 final size:3
Alignment explanation
Indices: 73625342--73625535 Score: 119
Period size: 3 Copynumber: 62.0 Consensus size: 3
73625332 GTTAATGATG
73625342 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
73625390 ATA ATA TTG A-A ATA CAAA AGCT- ATT ATA ATA AAA ATA TTA A-A ATA
1 ATA ATA ATA ATA ATA -ATA A--TA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
73625435 A-A ATA ATA AAA ACA TTA CTA CAT- ATA TATA TATA CATA CATGA AGA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA -ATA -ATA -ATA -AT-A ATA
* *
73625481 TATA CACTA ATGT ACA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 -ATA -A-TA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
73625530 ATA ATA
1 ATA ATA
73625536 TTGAAATAAA
Statistics
Matches: 152, Mismatches: 25, Indels: 28
0.74 0.12 0.14
Matches are distributed among these distances:
2 8 0.05
3 118 0.78
4 23 0.15
5 3 0.02
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:73626041 original size:22 final size:22
Alignment explanation
Indices: 73626013--73626056 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
73626003 GAAAAAAAGA
*
73626013 AGAGAGAGGGGAGAGAGAAGGG
1 AGAGAGAAGGGAGAGAGAAGGG
* *
73626035 AGAGAGAAGGGAGGGGGAAGGG
1 AGAGAGAAGGGAGAGAGAAGGG
73626057 GAATCCGGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.61, T:0.00
Consensus pattern (22 bp):
AGAGAGAAGGGAGAGAGAAGGG
Found at i:73626056 original size:11 final size:11
Alignment explanation
Indices: 73626013--73626047 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
73626003 GAAAAAAAGA
*
73626013 AGAGAGAGGGG
1 AGAGAGAAGGG
73626024 AGAGAGAAGGG
1 AGAGAGAAGGG
73626035 AGAGAGAAGGG
1 AGAGAGAAGGG
73626046 AG
1 AG
73626048 GGGGAAGGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (11 bp):
AGAGAGAAGGG
Found at i:73626195 original size:13 final size:13
Alignment explanation
Indices: 73626159--73626201 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
73626149 TTTTTCTTTA
*
73626159 ATATTTGTTTTGTAT
1 ATATTT-TTTTAT-T
*
73626174 ATATATTTTTATT
1 ATATTTTTTTATT
73626187 ATATTTTTTTATT
1 ATATTTTTTTATT
73626200 AT
1 AT
73626202 GATGTATATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 15 0.60
14 5 0.20
15 5 0.20
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.70
Consensus pattern (13 bp):
ATATTTTTTTATT
Found at i:73627924 original size:22 final size:24
Alignment explanation
Indices: 73627865--73627925 Score: 67
Period size: 22 Copynumber: 2.7 Consensus size: 24
73627855 GTATGTACAC
73627865 CAAATAAT-AATAATATATAAGTGA
1 CAAA-AATGAATAATATATAAGTGA
*
73627889 CAATAATGAA-AATA-ATAAGT-A
1 CAAAAATGAATAATATATAAGTGA
*
73627910 TAAAAATGAATAATAT
1 CAAAAATGAATAATAT
73627926 GATATACGGA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
21 9 0.29
22 10 0.32
23 7 0.23
24 5 0.16
ACGTcount: A:0.61, C:0.03, G:0.08, T:0.28
Consensus pattern (24 bp):
CAAAAATGAATAATATATAAGTGA
Found at i:73628482 original size:26 final size:26
Alignment explanation
Indices: 73628446--73628555 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
73628436 TGATACAAAT
73628446 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
73628472 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
73628498 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
73628524 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
73628550 TGATAA
1 TGATAA
73628556 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:73630061 original size:25 final size:26
Alignment explanation
Indices: 73630033--73630084 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
73630023 TTTACAGTTT
*
73630033 TACCCCTAGTGATAAATT-ACCGAAA
1 TACCCCTAGGGATAAATTGACCGAAA
* *
73630058 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
73630084 T
1 T
73630085 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:73631497 original size:53 final size:51
Alignment explanation
Indices: 73631440--73631538 Score: 130
Period size: 53 Copynumber: 1.9 Consensus size: 51
73631430 TATGTAGTAT
73631440 AATATTAAAATATAATAATACAACAT-TAAAA-ATATATGATATATATAAAATAC
1 AATATTAAAATAT-AT-ATACAACATATAAAATATATAT-ATA-ATATAAAATAC
* *
73631493 AATATTAAAGTATATATATAACATATAAAATATATATATAATATAA
1 AATATTAAAATATATATACAACATATAAAATATATATATAATATAA
73631539 TACTAAGTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
51 14 0.33
52 10 0.24
53 18 0.43
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (51 bp):
AATATTAAAATATATATACAACATATAAAATATATATATAATATAAAATAC
Found at i:73631508 original size:33 final size:32
Alignment explanation
Indices: 73631441--73631524 Score: 91
Period size: 33 Copynumber: 2.6 Consensus size: 32
73631431 ATGTAGTATA
*
73631441 ATAT-TAAAATATAATAATACAACATTAAAAAT
1 ATATATAACATATAA-AATACAACATTAAAAAT
* * *
73631473 ATATGAT-ATATATAAAATACAATATTAAAGTAT
1 ATAT-ATAACATATAAAATACAACATTAAA-AAT
73631506 ATATATAACATATAAAATA
1 ATATATAACATATAAAATA
73631525 TATATATAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
32 19 0.43
33 24 0.55
34 1 0.02
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (32 bp):
ATATATAACATATAAAATACAACATTAAAAAT
Found at i:73631523 original size:51 final size:53
Alignment explanation
Indices: 73631440--73631538 Score: 134
Period size: 51 Copynumber: 1.9 Consensus size: 53
73631430 TATGTAGTAT
73631440 AATATTAAAATATAATAATACAACATTAAAAATATATGATAT-ATATAAAATAC
1 AATATTAAAATATAATAATACAACATTAAAAATATAT-ATATAATATAAAATAC
* *
73631493 AATATTAAAGTAT-AT-ATATAACA-TATAAAATATATATATAATATAA
1 AATATTAAAATATAATAATACAACATTA-AAAATATATATATAATATAA
73631539 TACTAAGTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
50 6 0.14
51 22 0.52
52 2 0.05
53 12 0.29
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (53 bp):
AATATTAAAATATAATAATACAACATTAAAAATATATATATAATATAAAATAC
Found at i:73631532 original size:26 final size:25
Alignment explanation
Indices: 73631338--73631538 Score: 97
Period size: 26 Copynumber: 8.1 Consensus size: 25
73631328 ATATACATGG
73631338 AAATATAAAAGTA-ATATATA-ACTAGT
1 AAATATAAAA-TATATATATATA-TA-T
*
73631364 -AATATCAAAATATATACATGATA-AT
1 AAATAT-AAAATATATATAT-ATATAT
* *
73631389 ATATATAAAA-ATATATGTATATAAT
1 AAATATAAAATATATATATATAT-AT
* * *
73631414 GTAATATGAAAATATATATGTA-GTAT
1 -AAATAT-AAAATATATATATATATAT
*
73631440 -AATATTAAAATATA-ATA-ATACA-
1 AAATA-TAAAATATATATATATATAT
*
73631462 ACAT-TAAAA-ATATATGATATATAT
1 AAATATAAAATATATAT-ATATATAT
* *
73631486 AAA-ATACAATATTAAAGTATATATAT
1 AAATATAAAATA-TATA-TATATATAT
73631512 AACATATAAAATATATATATA-ATAT
1 AA-ATATAAAATATATATATATATAT
73631537 AA
1 AA
73631539 TACTAAGTAT
Statistics
Matches: 135, Mismatches: 17, Indels: 47
0.68 0.09 0.24
Matches are distributed among these distances:
20 3 0.02
21 7 0.05
22 2 0.01
23 12 0.09
24 24 0.18
25 22 0.16
26 37 0.27
27 11 0.08
28 17 0.13
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (25 bp):
AAATATAAAATATATATATATATAT
Found at i:73631536 original size:18 final size:19
Alignment explanation
Indices: 73631493--73631538 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
73631483 TATAAAATAC
*
73631493 AATATTAAAGTATATATATA
1 AATA-TAAAATATATATATA
73631513 ACATATAAAATATATATAT-
1 A-ATATAAAATATATATATA
73631532 AATATAA
1 AATATAA
73631539 TACTAAGTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 6 0.25
19 1 0.04
20 14 0.58
21 3 0.12
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (19 bp):
AATATAAAATATATATATA
Found at i:73631540 original size:16 final size:16
Alignment explanation
Indices: 73631373--73631540 Score: 51
Period size: 16 Copynumber: 10.9 Consensus size: 16
73631363 TAATATCAAA
73631373 ATATATACATGATAATAT
1 ATATATA-AT-ATAATAT
*
73631391 ATATA-AAAAT-ATAT
1 ATATATAATATAATAT
* *
73631405 GTATATAATGTAATAT
1 ATATATAATATAATAT
*
73631421 -GA-A-AATAT-ATAT
1 ATATATAATATAATAT
* *
73631433 GTAGTATAATATTAAAAT
1 ATA-TATAATA-TAATAT
* *
73631451 ATA-ATAATACAACAT
1 ATATATAATATAATAT
*
73631466 -TA-AAAATAT-ATGAT
1 ATATATAATATAAT-AT
*
73631480 ATATATAAAATACA-AT
1 ATATATAATATA-ATAT
73631496 AT-TA-AAGTAT-ATAT
1 ATATATAA-TATAATAT
* *
73631510 ATA-ACATATAAAATAT
1 ATATATA-ATATAATAT
73631526 ATATATAATATAATA
1 ATATATAATATAATA
73631541 CTAAGTATAC
Statistics
Matches: 110, Mismatches: 20, Indels: 42
0.64 0.12 0.24
Matches are distributed among these distances:
12 4 0.04
13 7 0.06
14 25 0.23
15 20 0.18
16 39 0.35
17 4 0.04
18 11 0.10
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (16 bp):
ATATATAATATAATAT
Found at i:73632174 original size:19 final size:19
Alignment explanation
Indices: 73632150--73632189 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
73632140 ATTTCCGGTG
73632150 GGACTCCGGCTAGGAGTCC
1 GGACTCCGGCTAGGAGTCC
73632169 GGACTCCGGCTAGGAGTCC
1 GGACTCCGGCTAGGAGTCC
73632188 GG
1 GG
73632190 TCACCGGAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.15, C:0.30, G:0.40, T:0.15
Consensus pattern (19 bp):
GGACTCCGGCTAGGAGTCC
Found at i:73632196 original size:19 final size:19
Alignment explanation
Indices: 73632150--73632196 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
73632140 ATTTCCGGTG
*
73632150 GGACTCCGGCTAGGAGTCC
1 GGACACCGGCTAGGAGTCC
*
73632169 GGACTCCGGCTAGGAGTCC
1 GGACACCGGCTAGGAGTCC
*
73632188 GGTCACCGG
1 GGACACCGG
73632197 AGCCTCGCCG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.15, C:0.32, G:0.38, T:0.15
Consensus pattern (19 bp):
GGACACCGGCTAGGAGTCC
Found at i:73633642 original size:55 final size:55
Alignment explanation
Indices: 73633476--73633746 Score: 413
Period size: 55 Copynumber: 5.0 Consensus size: 55
73633466 GTGATCTTGA
* * * * *
73633476 GCTCAACTCATTTCTCGCAATATGAATTGACTCTTT-AAAAATAGATATTAAAAG
1 GCTCAACTCACTTCTCGCAATATGAGTTGACTTTTTGAAAAACAGAAATTAAAAG
* * * *
73633530 ACTCAACTCACCTCTCGCAACATGAGTTGA-TTTTTGAAAAATAGAAATTAAAAG
1 GCTCAACTCACTTCTCGCAATATGAGTTGACTTTTTGAAAAACAGAAATTAAAAG
73633584 GCTCAACTCACTTCTCGCAATATGAGTTGACTTTTTGAAAAACAGAAATTAAAAG
1 GCTCAACTCACTTCTCGCAATATGAGTTGACTTTTTGAAAAACAGAAATTAAAAG
* * *
73633639 GCTCAACTCACCTCTCGTAATATGAGTTGACTTTTTGAAAAACCGAAATTAAAAG
1 GCTCAACTCACTTCTCGCAATATGAGTTGACTTTTTGAAAAACAGAAATTAAAAG
73633694 GCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTAAAA
1 GCTCAACTCACTTCTCGCAATATGAGTTGACTTTTTGAAAAACAGAAATTAAAA
73633747 ATAGAAATTG
Statistics
Matches: 198, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
53 4 0.02
54 91 0.46
55 103 0.52
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (55 bp):
GCTCAACTCACTTCTCGCAATATGAGTTGACTTTTTGAAAAACAGAAATTAAAAG
Found at i:73633666 original size:109 final size:110
Alignment explanation
Indices: 73633476--73633746 Score: 431
Period size: 109 Copynumber: 2.5 Consensus size: 110
73633466 GTGATCTTGA
* * * * *
73633476 GCTCAACTCATTTCTCGCAATATGAATTGACTCTTT-AAAAATAGATATTAAAAGACTCAACTCA
1 GCTCAACTCACTTCTCGCAATATGAGTTGACTTTTTGAAAAACAGAAATTAAAAGACTCAACTCA
*
73633540 CCTCTCGCAACATGAGTTGA-TTTTTGAAAAATAGAAATTAAAAG
66 CCTCTCGCAACATGAGTTGACTTTTTGAAAAACAGAAATTAAAAG
*
73633584 GCTCAACTCACTTCTCGCAATATGAGTTGACTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
1 GCTCAACTCACTTCTCGCAATATGAGTTGACTTTTTGAAAAACAGAAATTAAAAGACTCAACTCA
* * *
73633649 CCTCTCGTAATATGAGTTGACTTTTTGAAAAACCGAAATTAAAAG
66 CCTCTCGCAACATGAGTTGACTTTTTGAAAAACAGAAATTAAAAG
73633694 GCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTAAAA
1 GCTCAACTCACTTCTCGCAATATGAGTTGACTTTTTGAAAAACAGAAATTAAAA
73633747 ATAGAAATTG
Statistics
Matches: 151, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
108 33 0.22
109 66 0.44
110 52 0.34
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (110 bp):
GCTCAACTCACTTCTCGCAATATGAGTTGACTTTTTGAAAAACAGAAATTAAAAGACTCAACTCA
CCTCTCGCAACATGAGTTGACTTTTTGAAAAACAGAAATTAAAAG
Done.