Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 258 of 444
Found at i:73633976 original size:79 final size:79
Alignment explanation
Indices: 73633845--73633997 Score: 279
Period size: 79 Copynumber: 1.9 Consensus size: 79
73633835 AAATTGGAAG
73633845 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGACTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGACTCAACTCACCTCTCGCAATATGAGTTGAT
73633910 TTTTGAAAAGCAGA
66 TTTTGAAAAGCAGA
* * *
73633924 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTTAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGACTCAACTCACCTCTCGCAATATGAGTTGAT
73633989 TTTTGAAAA
66 TTTTGAAAA
73633998 CATGAATTAA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 71 1.00
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (79 bp):
AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGACTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGAAAAGCAGA
Found at i:73634001 original size:178 final size:177
Alignment explanation
Indices: 73633692--73634369 Score: 774
Period size: 178 Copynumber: 3.8 Consensus size: 177
73633682 CGAAATTAAA
* * *
73633692 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAATAGAAATTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAG-------AAACAGAAATTG
*
73633757 AAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACA
59 AAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACA
*
73633822 TGAATTAAAACAGAAATTGGAAGAACAGAAATTGAAAATACCTCAGCGTGTCCTG
124 TGAATTAAAACAGAAATTGAAAGAACAGAAATTGAAAATACCTCAGCGTGTCC-G
*
73633877 AGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAACAGAAATTGAAATTAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAACAGAAATTGAAATTAC
* * *
73633942 CTCAGCGTGTCCTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATGAATTA
66 CTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATGAATTA
*
73634007 AAACAGAAATTGAAAGAACAGAAATTGAAAATACCTCAGCGTGTGAACCA
131 AAACAGAAATTGAAAGAACAGAAATTGAAAATACCTCAGCGTGT---CCG
* * ** * *
73634057 AGGTTCAACTCATCTCTCGCAATATGAGTTGATTTTT---TTGGA-AAATAGAAATTGAAATTAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAACAGAAATTGAAATTAC
*
73634118 CTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-------T---TTT
66 CTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATGAATTA
* * * *
73634173 AAACATAAATTGAAAGAACAGAAATTGGAAATACCTCAGTATGTGAACCG
131 AAACAGAAATTGAAAGAACAGAAATTGAAAATACCTCAG--CGTG-TCCG
* ** * ***** * *
73634223 AGGTTCAACTCATTTCTCGCAATGTGAGTTGATTTTTTTTTTG-AAAAACAGAAATTAAAATTAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAACAGAAATTGAAATTAC
* * *
73634287 CTCAGCGTGCCCCGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGTATAAATT
66 CTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-CATGAATT
* *
73634352 AAAAATAGAAATTAAAAG
130 -AAAACAGAAATTGAAAG
73634370 GCTCAACTCA
Statistics
Matches: 438, Mismatches: 33, Indels: 48
0.84 0.06 0.09
Matches are distributed among these distances:
166 76 0.17
168 4 0.01
169 71 0.16
176 66 0.15
177 3 0.01
178 124 0.28
180 36 0.08
181 15 0.03
185 43 0.10
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (177 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAACAGAAATTGAAATTAC
CTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATGAATTA
AAACAGAAATTGAAAGAACAGAAATTGAAAATACCTCAGCGTGTCCG
Found at i:73634028 original size:15 final size:15
Alignment explanation
Indices: 73634008--73634036 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
73633998 CATGAATTAA
73634008 AACAGAAATTGAAAG
1 AACAGAAATTGAAAG
73634023 AACAGAAATTGAAA
1 AACAGAAATTGAAA
73634037 ATACCTCAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.07, G:0.17, T:0.14
Consensus pattern (15 bp):
AACAGAAATTGAAAG
Found at i:73634172 original size:77 final size:76
Alignment explanation
Indices: 73634026--73634170 Score: 220
Period size: 75 Copynumber: 1.9 Consensus size: 76
73634016 TTGAAAGAAC
* *
73634026 AGAAATTGAAAATACCTCAGCGTGTGAACCAAGGTTCAACTCATCTCTCGCAATATGAGTTGATT
1 AGAAATTGAAAATACCTCAGCG-GTGAACCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
73634091 TTTTTGGAAAAT
65 TTTTTGGAAAAT
* ** *
73634103 AGAAATTGAAATTACCTCAGC-GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AGAAATTGAAAATACCTCAGCGGTGAACCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
73634167 TTTT
66 TTTT
73634171 TTAAACATAA
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
75 42 0.68
77 20 0.32
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (76 bp):
AGAAATTGAAAATACCTCAGCGGTGAACCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTTTGGAAAAT
Found at i:73634364 original size:166 final size:165
Alignment explanation
Indices: 73634006--73634368 Score: 518
Period size: 166 Copynumber: 2.2 Consensus size: 165
73633996 AACATGAATT
* *
73634006 AAAACAGAAATTGAAAGAACAGAAATTGAAAATACCTCAGCGTGTGAACCAAGGTTCAACTCATC
1 AAAACATAAATTGAAAGAACAGAAATTGAAAATACCTCAGCATGTGAACCAAGGTTCAACTCATC
* * *
73634071 TCTCGCAATATGAGTTGATTTTTTTGGAAAATAGAAATTGAAATTACCTCAGCGTGCCCCGAGGC
66 TCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAATTACCTCAGCGTGCCCCGAGGC
*
73634136 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT
131 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG
* * * * *
73634172 TAAACATAAATTGAAAGAACAGAAATTGGAAATACCTCAGTATGTGAACCGAGGTTCAACTCATT
1 AAAACATAAATTGAAAGAACAGAAATTGAAAATACCTCAGCATGTGAACCAAGGTTCAACTCATC
*
73634237 TCTCGCAATGTGAGTTGATTTTTTTTTTGAAAAACAGAAATTAAAATTACCTCAGCGTGCCCCGA
66 TCTCGCAATATGAGTTGA---TTTTTTTGAAAAACAGAAATTAAAATTACCTCAGCGTGCCCCGA
*
73634302 GGCTTAACTCACCTCTCGCAATATGAGTTGA-TTTTTG
128 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
* *
73634339 AAAAGTATAAATT-AAA-AATAGAAATT-AAAA
1 AAAA-CATAAATTGAAAGAACAGAAATTGAAAA
73634369 GGCTCAACTC
Statistics
Matches: 176, Mismatches: 17, Indels: 9
0.87 0.08 0.04
Matches are distributed among these distances:
165 3 0.02
166 84 0.48
167 11 0.06
168 7 0.04
169 71 0.40
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (165 bp):
AAAACATAAATTGAAAGAACAGAAATTGAAAATACCTCAGCATGTGAACCAAGGTTCAACTCATC
TCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAATTACCTCAGCGTGCCCCGAGGC
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
Found at i:73647009 original size:22 final size:24
Alignment explanation
Indices: 73646950--73647010 Score: 67
Period size: 22 Copynumber: 2.7 Consensus size: 24
73646940 GTATGTACAC
73646950 CAAATAAT-AATAATATATAAGTGA
1 CAAA-AATGAATAATATATAAGTGA
*
73646974 CAATAATGAA-AATA-ATAAGT-A
1 CAAAAATGAATAATATATAAGTGA
*
73646995 TAAAAATGAATAATAT
1 CAAAAATGAATAATAT
73647011 GATATACGGA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
21 9 0.29
22 10 0.32
23 7 0.23
24 5 0.16
ACGTcount: A:0.61, C:0.03, G:0.08, T:0.28
Consensus pattern (24 bp):
CAAAAATGAATAATATATAAGTGA
Found at i:73647397 original size:26 final size:26
Alignment explanation
Indices: 73647350--73647450 Score: 82
Period size: 26 Copynumber: 3.9 Consensus size: 26
73647340 TATAAGTAAT
*
73647350 ATATAACTAGTAATATCAAAATATATAC
1 ATATAA-TA-TAATATAAAAATATATAC
**
73647378 ATGATAATAT-ATATAAAAATATATGT
1 AT-ATAATATAATATAAAAATATATAC
* *
73647404 ATATAATGTAATATGAAAATATAT--
1 ATATAATATAATATAAAAATATATAC
* * *
73647428 ATGTAGTATAATATTAAAATATA
1 ATATAATATAATATAAAAATATA
73647451 ATAATACAAC
Statistics
Matches: 62, Mismatches: 9, Indels: 8
0.78 0.11 0.10
Matches are distributed among these distances:
24 19 0.31
25 6 0.10
26 28 0.45
27 1 0.02
28 4 0.06
29 4 0.06
ACGTcount: A:0.53, C:0.03, G:0.07, T:0.37
Consensus pattern (26 bp):
ATATAATATAATATAAAAATATATAC
Found at i:73647490 original size:32 final size:32
Alignment explanation
Indices: 73647446--73647510 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
73647436 TAATATTAAA
73647446 ATATAATAATACAACATTAAAAATATATGATAT
1 ATATAATAATACAACATTAAAAATATAT-ATAT
* *
73647479 ATATAA-AATACAATATTAAAAGTATATATAT
1 ATATAATAATACAACATTAAAAATATATATAT
73647510 A
1 A
73647511 ACATATAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 5 0.17
32 19 0.63
33 6 0.20
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (32 bp):
ATATAATAATACAACATTAAAAATATATATAT
Found at i:73647494 original size:53 final size:53
Alignment explanation
Indices: 73647437--73647537 Score: 145
Period size: 53 Copynumber: 1.9 Consensus size: 53
73647427 TATGTAGTAT
73647437 AATATTAAAA-TATAATAATACAACAT-TAAAAATATATGATAT-ATATAAAATAC
1 AATATTAAAAGTAT-AT-ATACAACATATAAAAATATAT-ATATAATATAAAATAC
*
73647490 AATATTAAAAGTATATATATAACATATAAAAATATATATATAATATAA
1 AATATTAAAAGTATATATACAACATATAAAAATATATATATAATATAA
73647538 TACTAAGTAT
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
52 12 0.27
53 29 0.66
54 3 0.07
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (53 bp):
AATATTAAAAGTATATATACAACATATAAAAATATATATATAATATAAAATAC
Found at i:73647535 original size:19 final size:20
Alignment explanation
Indices: 73647490--73647537 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
73647480 TATAAAATAC
*
73647490 AATATTAAAAGTATATATATA
1 AATA-TAAAAATATATATATA
73647511 ACATATAAAAATATATATAT-
1 A-ATATAAAAATATATATATA
73647531 AATATAA
1 AATATAA
73647538 TACTAAGTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 6 0.24
20 1 0.04
21 15 0.60
22 3 0.12
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (20 bp):
AATATAAAAATATATATATA
Found at i:73650064 original size:24 final size:25
Alignment explanation
Indices: 73650013--73650066 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
73650003 TGACGATTTT
*
73650013 TTAAAATTTACAATTTCTCAAAATA
1 TTAAAATTTACAATTTCTCAAAAAA
* * *
73650038 TTAAAATTTA-ATTTTTTGAAAAAA
1 TTAAAATTTACAATTTCTCAAAAAA
73650062 TTAAA
1 TTAAA
73650067 TTTGAAAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 15 0.60
25 10 0.40
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.43
Consensus pattern (25 bp):
TTAAAATTTACAATTTCTCAAAAAA
Found at i:73651946 original size:18 final size:18
Alignment explanation
Indices: 73651915--73651949 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
73651905 AAAATTAAGA
*
73651915 AAAAAAAAGTTTAAAAAG
1 AAAAAAAAGGTTAAAAAG
*
73651933 AAAAATAAGGTTAAAAA
1 AAAAAAAAGGTTAAAAA
73651950 AAAGAACCCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.11, T:0.17
Consensus pattern (18 bp):
AAAAAAAAGGTTAAAAAG
Found at i:73651949 original size:19 final size:19
Alignment explanation
Indices: 73651911--73651950 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
73651901 AAGTAAAATT
*
73651911 AAGAAAAAAAAAGTTTAAA
1 AAGAAAAAAAAAGTTAAAA
* *
73651930 AAGAAAAATAAGGTTAAAA
1 AAGAAAAAAAAAGTTAAAA
73651949 AA
1 AA
73651951 AAGAACCCTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.15
Consensus pattern (19 bp):
AAGAAAAAAAAAGTTAAAA
Found at i:73654276 original size:26 final size:27
Alignment explanation
Indices: 73654226--73654277 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
73654216 GGATAGGCAT
*
73654226 ATAATATAATATGAAAAATGTATATAC
1 ATAATATAATATGAAAAACGTATATAC
73654253 ATAATAT-ATATG-AAAACGTAATATA
1 ATAATATAATATGAAAAACGT-ATATA
73654278 GTATTAGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 6 0.26
26 10 0.43
27 7 0.30
ACGTcount: A:0.56, C:0.04, G:0.08, T:0.33
Consensus pattern (27 bp):
ATAATATAATATGAAAAACGTATATAC
Found at i:73657131 original size:25 final size:24
Alignment explanation
Indices: 73657097--73657251 Score: 238
Period size: 25 Copynumber: 6.2 Consensus size: 24
73657087 AAGACATGAA
73657097 ATCATGAAACATTTACCTAACCATT
1 ATCATG-AACATTTACCTAACCATT
73657122 ATCATGAAACATTTACCTAACCCATT
1 ATCATG-AACATTTACCTAA-CCATT
73657148 ATCATGAACATTTACCTAACCATT
1 ATCATGAACATTTACCTAACCATT
73657172 ATCATGAACATTTACCTAACCCATT
1 ATCATGAACATTTACCTAA-CCATT
*
73657197 ATCATGGAACATTTACCTAACTATT
1 ATCAT-GAACATTTACCTAACCATT
73657222 ATCATGGAACATTTACCTAACCTATT
1 ATCAT-GAACATTTACCTAACC-ATT
73657248 ATCA
1 ATCA
73657252 ATTTGTATCA
Statistics
Matches: 124, Mismatches: 2, Indels: 7
0.93 0.02 0.05
Matches are distributed among these distances:
24 24 0.19
25 68 0.55
26 32 0.26
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (24 bp):
ATCATGAACATTTACCTAACCATT
Found at i:73662947 original size:26 final size:26
Alignment explanation
Indices: 73662911--73663020 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
73662901 CATGAAATTC
73662911 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
73662937 TTATCATGAAATATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
73662963 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
73662989 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
73663015 TTATCA
1 TTATCA
73663021 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:73663556 original size:25 final size:26
Alignment explanation
Indices: 73663519--73663570 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
73663509 TCAAACATGC
73663519 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* * *
73663545 ATTTCGGT-AATTTATCTCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
73663570 A
1 A
73663571 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:73665089 original size:26 final size:23
Alignment explanation
Indices: 73665053--73665149 Score: 121
Period size: 26 Copynumber: 4.2 Consensus size: 23
73665043 ATGAAATCCC
73665053 ATCATGAACATTTACCTAACCCATT
1 ATCA-GAACATTTACCTAA-CCATT
73665078 ATCATGGAACATTTACCTAACC--T
1 ATCA--GAACATTTACCTAACCATT
73665101 -TCAGAACATTTACCT-ACCATT
1 ATCAGAACATTTACCTAACCATT
73665122 ATCAGGAACATTTACCTAACCATT
1 ATCA-GAACATTTACCTAACCATT
73665146 ATCA
1 ATCA
73665150 ATTTGTACAT
Statistics
Matches: 65, Mismatches: 1, Indels: 13
0.82 0.01 0.16
Matches are distributed among these distances:
19 3 0.05
20 12 0.18
21 1 0.02
22 6 0.09
23 13 0.20
24 10 0.15
25 6 0.09
26 14 0.22
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.31
Consensus pattern (23 bp):
ATCAGAACATTTACCTAACCATT
Found at i:73665138 original size:43 final size:46
Alignment explanation
Indices: 73665058--73665142 Score: 149
Period size: 43 Copynumber: 1.9 Consensus size: 46
73665048 ATCCCATCAT
73665058 GAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTTCA
1 GAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTTCA
73665104 GAACATTTACCT-A-CCATTATCA-GGAACATTTACCTAACC
1 GAACATTTACCTAACCCATTATCATGGAACATTTACCTAACC
73665143 ATTATCAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
43 17 0.44
44 9 0.23
45 1 0.03
46 12 0.31
ACGTcount: A:0.35, C:0.28, G:0.07, T:0.29
Consensus pattern (46 bp):
GAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTTCA
Found at i:73669838 original size:25 final size:24
Alignment explanation
Indices: 73669782--73669932 Score: 177
Period size: 25 Copynumber: 6.2 Consensus size: 24
73669772 CATGAAATTC
*
73669782 TTATCATGAAACATTTACCTA-ACA
1 TTATCATG-AACATTTACCTACCCA
73669806 TTATCATGAAACATTTACCTACCCA
1 TTATCATG-AACATTTACCTACCCA
*
73669831 TTATCATGGAACATTTACCTAACCTA
1 TTATCAT-GAACATTTACCT-ACCCA
*
73669857 TTATCATGAACATTTACCTAACCA
1 TTATCATGAACATTTACCTACCCA
73669881 TTATCATGGAACATTTACCT----A
1 TTATCAT-GAACATTTACCTACCCA
*
73669902 TTATCATGAACATTTACCTAACCTA
1 TTATCATGAACATTTACCT-ACCCA
73669927 TTATCA
1 TTATCA
73669933 ATTTGTATCA
Statistics
Matches: 114, Mismatches: 4, Indels: 17
0.84 0.03 0.13
Matches are distributed among these distances:
20 12 0.11
21 8 0.07
24 31 0.27
25 51 0.45
26 12 0.11
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.35
Consensus pattern (24 bp):
TTATCATGAACATTTACCTACCCA
Found at i:73669883 original size:75 final size:70
Alignment explanation
Indices: 73669782--73669932 Score: 232
Period size: 75 Copynumber: 2.1 Consensus size: 70
73669772 CATGAAATTC
73669782 TTATCATGAAACATTTACCTAACATTATCATGAAACATTTACCTACCCATTATCATGGAACATTT
1 TTATCATGAAACATTTACCTAACATTATCATGAAACATTTACCT----ATTATCAT-GAACATTT
73669847 ACCTAACCTA
61 ACCTAACCTA
*
73669857 TTATCATG-AACATTTACCTAACCATTATCATGGAACATTTACCTATTATCATGAACATTTACCT
1 TTATCATGAAACATTTACCTAA-CATTATCATGAAACATTTACCTATTATCATGAACATTTACCT
73669921 AACCTA
65 AACCTA
73669927 TTATCA
1 TTATCA
73669933 ATTTGTATCA
Statistics
Matches: 74, Mismatches: 1, Indels: 7
0.90 0.01 0.09
Matches are distributed among these distances:
70 24 0.32
71 8 0.11
74 13 0.18
75 29 0.39
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.35
Consensus pattern (70 bp):
TTATCATGAAACATTTACCTAACATTATCATGAAACATTTACCTATTATCATGAACATTTACCTA
ACCTA
Found at i:73669887 original size:50 final size:50
Alignment explanation
Indices: 73669782--73669932 Score: 217
Period size: 50 Copynumber: 3.1 Consensus size: 50
73669772 CATGAAATTC
* *
73669782 TTATCATGAAACATTTACCTAA-C-ATTATCATGAAACATTTACCTACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATG-AACATTTACCTAACCA
73669831 TTATCATGGAACATTTACCTAACCTATTATCATGAACATTTACCTAACCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAACATTTACCTAACCA
73669881 TTATCATGGAACA-TT---T-ACCTATTATCATGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAACATTTACCTAACC-A
73669927 TTATCA
1 TTATCA
73669933 ATTTGTATCA
Statistics
Matches: 97, Mismatches: 2, Indels: 9
0.90 0.02 0.08
Matches are distributed among these distances:
45 28 0.29
46 8 0.08
49 23 0.24
50 29 0.30
51 9 0.09
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.35
Consensus pattern (50 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAACATTTACCTAACCA
Found at i:73670558 original size:15 final size:15
Alignment explanation
Indices: 73670538--73670566 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
73670528 AGACATAATA
73670538 ATACTAAATATATAC
1 ATACTAAATATATAC
73670553 ATACTAAATATATA
1 ATACTAAATATATA
73670567 TATGCATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (15 bp):
ATACTAAATATATAC
Found at i:73673335 original size:26 final size:26
Alignment explanation
Indices: 73673280--73673385 Score: 160
Period size: 26 Copynumber: 4.1 Consensus size: 26
73673270 TGAAATGCCC
73673280 TCATGGAACATTTACCTAA-CCATTA
1 TCATGGAACATTTACCTAACCCATTA
73673305 TCATGGAACATTTACCTAACCCATTA
1 TCATGGAACATTTACCTAACCCATTA
* ** *
73673331 TCATGGAATATTTATTTAATCCATTA
1 TCATGGAACATTTACCTAACCCATTA
*
73673357 TCATGGAACATTTACCTAACCTATTA
1 TCATGGAACATTTACCTAACCCATTA
73673383 TCA
1 TCA
73673386 ATTTGTACCA
Statistics
Matches: 71, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
25 19 0.27
26 52 0.73
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.36
Consensus pattern (26 bp):
TCATGGAACATTTACCTAACCCATTA
Found at i:73674257 original size:47 final size:48
Alignment explanation
Indices: 73674202--73674312 Score: 142
Period size: 48 Copynumber: 2.4 Consensus size: 48
73674192 TATATATAAG
*
73674202 ATAG-TATAAAAATATATAACT-ATGATA-CTAAAGTATATACACGA-A
1 ATAGATATAAAAATATATAACTAATAATATCTAAA-TATATACACGATA
*
73674247 ATAGGATATAAAAATATATAACTAATAATATCTAAATATATACATGATA
1 ATA-GATATAAAAATATATAACTAATAATATCTAAATATATACACGATA
*
73674296 ATATATATAAAAA-ATAT
1 ATAGATATAAAAATATAT
73674313 TAGAAAATAT
Statistics
Matches: 58, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
45 3 0.05
46 1 0.02
47 21 0.36
48 24 0.41
49 9 0.16
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.32
Consensus pattern (48 bp):
ATAGATATAAAAATATATAACTAATAATATCTAAATATATACACGATA
Found at i:73674282 original size:24 final size:24
Alignment explanation
Indices: 73674208--73674288 Score: 60
Period size: 24 Copynumber: 3.4 Consensus size: 24
73674198 TAAGATAGTA
*
73674208 TAAAAATATATAACT-ATGATA-C
1 TAAAAATATATAACTAATAATATC
* * ** *
73674230 T-AAAGTATATACACGAAATAGGATA
1 TAAAAATATATA-AC-TAATAATATC
73674255 TAAAAATATATAACTAATAATATC
1 TAAAAATATATAACTAATAATATC
*
73674279 TAAATATATA
1 TAAAAATATA
73674289 CATGATAATA
Statistics
Matches: 42, Mismatches: 12, Indels: 8
0.68 0.19 0.13
Matches are distributed among these distances:
21 9 0.21
22 3 0.07
24 18 0.43
25 3 0.07
26 9 0.21
ACGTcount: A:0.56, C:0.07, G:0.06, T:0.31
Consensus pattern (24 bp):
TAAAAATATATAACTAATAATATC
Found at i:73674344 original size:20 final size:20
Alignment explanation
Indices: 73674319--73674372 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
73674309 ATATTAGAAA
*
73674319 ATATATGTACATAATATAAT
1 ATATATATACATAATATAAT
73674339 ATATATATACATAATATAAT
1 ATATATATACATAATATAAT
*
73674359 AT-TA-AAACATAATA
1 ATATATATACATAATA
73674373 ATACAACATT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.28
19 2 0.06
20 21 0.66
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.37
Consensus pattern (20 bp):
ATATATATACATAATATAAT
Found at i:73674368 original size:18 final size:20
Alignment explanation
Indices: 73674293--73674372 Score: 74
Period size: 20 Copynumber: 4.0 Consensus size: 20
73674283 TATATACATG
* *
73674293 ATAATATATATAAAAAATATT
1 ATAATATATAT-AAACATAAT
* * **
73674314 AGAAAATATATGTACATAAT
1 ATAATATATATAAACATAAT
*
73674334 ATAATATATATATACATAAT
1 ATAATATATATAAACATAAT
73674354 ATAATAT-TA-AAACATAAT
1 ATAATATATATAAACATAAT
73674372 A
1 A
73674373 ATACAACATT
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
18 9 0.18
19 2 0.04
20 29 0.59
21 9 0.18
ACGTcount: A:0.59, C:0.04, G:0.03, T:0.35
Consensus pattern (20 bp):
ATAATATATATAAACATAAT
Found at i:73674390 original size:55 final size:50
Alignment explanation
Indices: 73674331--73674457 Score: 123
Period size: 55 Copynumber: 2.4 Consensus size: 50
73674321 ATATGTACAT
73674331 AATATAATATATATATACATA-ATATAATATTAAAACATAATAATACAACAT-TAAA
1 AATAT-ATATATATATA-ATATATA--ATATTAAAA-AT-AT-ATACAACATATAAA
* * *
73674386 AATATTTATGATATATTTAATATATAATATTAAAAGTATATATAACATATAAA
1 AATA--TAT-ATATATATAATATATAATATTAAAAATATATACAACATATAAA
73674439 AATATATATATATATAATA
1 AATATATATATATATAATA
73674458 CCTAAGTATA
Statistics
Matches: 63, Mismatches: 4, Indels: 15
0.77 0.05 0.18
Matches are distributed among these distances:
50 11 0.17
51 3 0.05
52 8 0.13
53 10 0.16
54 1 0.02
55 13 0.21
56 5 0.08
57 12 0.19
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.38
Consensus pattern (50 bp):
AATATATATATATATAATATATAATATTAAAAATATATACAACATATAAA
Found at i:73674426 original size:18 final size:19
Alignment explanation
Indices: 73674405--73674455 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 19
73674395 GATATATTTA
*
73674405 ATATATAATAT-TAAAAGT
1 ATATATAATATATAAAAAT
*
73674423 ATATATAACATATAAAAAT
1 ATATATAATATATAAAAAT
73674442 ATATAT-ATATATAA
1 ATATATAATATATAA
73674456 TACCTAAGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 17 0.59
19 12 0.41
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (19 bp):
ATATATAATATATAAAAAT
Found at i:73674444 original size:19 final size:18
Alignment explanation
Indices: 73674405--73674448 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
73674395 GATATATTTA
* *
73674405 ATATATAATATTAAAAGT
1 ATATATAACATTAAAAAT
73674423 ATATATAACATATAAAAAT
1 ATATATAACAT-TAAAAAT
73674442 ATATATA
1 ATATATA
73674449 TATATAATAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 10 0.43
19 13 0.57
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (18 bp):
ATATATAACATTAAAAAT
Found at i:73677129 original size:3 final size:3
Alignment explanation
Indices: 73677123--73677148 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
73677113 AAATAATAAT
73677123 AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AA
73677149 TATACATGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:73677512 original size:16 final size:16
Alignment explanation
Indices: 73677491--73677530 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
73677481 CCTTTAGTTC
73677491 GTTGTAATGGAAA-AAA
1 GTTGTAAT-GAAATAAA
*
73677507 GTTGTAATGAAATAGA
1 GTTGTAATGAAATAAA
73677523 GTTGTAAT
1 GTTGTAAT
73677531 CAGTAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (16 bp):
GTTGTAATGAAATAAA
Found at i:73677689 original size:11 final size:11
Alignment explanation
Indices: 73677670--73677724 Score: 51
Period size: 11 Copynumber: 5.1 Consensus size: 11
73677660 AGGATTATTA
*
73677670 TTAAAAATAAT
1 TTAATAATAAT
73677681 TTAATAATAA-
1 TTAATAATAAT
*
73677691 ATAATAAATAAT
1 TTAAT-AATAAT
* *
73677703 TTAATCATATT
1 TTAATAATAAT
73677714 TTAAT-ATAAT
1 TTAATAATAAT
73677724 T
1 T
73677725 ATTTTTATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
10 9 0.25
11 23 0.64
12 4 0.11
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (11 bp):
TTAATAATAAT
Found at i:73681124 original size:26 final size:26
Alignment explanation
Indices: 73681086--73681158 Score: 76
Period size: 26 Copynumber: 2.7 Consensus size: 26
73681076 CTATAAATAT
*
73681086 TATTAAATTTTAATAAAAA-TATTAAA
1 TATTAAATATTAA-AAAAATTATTAAA
73681112 TATTAAATATTAAAAAAATTATTATAA
1 TATTAAATATTAAAAAAATTATTA-AA
* *
73681139 AATATAAAAATTTAAAAAAA
1 TAT-TAAATA-TTAAAAAAA
73681159 AATATAAAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
25 5 0.12
26 17 0.43
27 4 0.10
28 5 0.12
29 9 0.22
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (26 bp):
TATTAAATATTAAAAAAATTATTAAA
Found at i:73681154 original size:8 final size:8
Alignment explanation
Indices: 73681137--73681200 Score: 55
Period size: 8 Copynumber: 8.2 Consensus size: 8
73681127 AAATTATTAT
73681137 AAAATATA
1 AAAATATA
73681145 AAAAT-T-
1 AAAATATA
*
73681151 TAAA-A-A
1 AAAATATA
73681157 AAAATATA
1 AAAATATA
73681165 AAACATATA
1 AAA-ATATA
*
73681174 GAAATATAA
1 AAAATAT-A
73681183 AAAATATA
1 AAAATATA
*
73681191 AAATTATA
1 AAAATATA
73681199 AA
1 AA
73681201 TTTATAAAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
6 6 0.13
7 2 0.04
8 23 0.51
9 14 0.31
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.25
Consensus pattern (8 bp):
AAAATATA
Found at i:73681167 original size:9 final size:9
Alignment explanation
Indices: 73681155--73681193 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
73681145 AAAATTTAAA
73681155 AAAAAATAT
1 AAAAAATAT
*
73681164 AAAACATAT
1 AAAAAATAT
*
73681173 -AGAAATAT
1 AAAAAATAT
73681181 AAAAAATAT
1 AAAAAATAT
73681190 AAAA
1 AAAA
73681194 TTATAAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
8 6 0.24
9 19 0.76
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (9 bp):
AAAAAATAT
Found at i:73681172 original size:29 final size:28
Alignment explanation
Indices: 73681090--73681186 Score: 74
Period size: 29 Copynumber: 3.4 Consensus size: 28
73681080 AAATATTATT
* * * *
73681090 AAATTTTAATAAAAATAT-TAAATAT-T
1 AAATTTAAAAAAAAATATAAAAATATAA
*
73681116 AAATATT-AAAAAAATTATTATAAAATATAA
1 AAAT-TTAAAAAAAAATA-TA-AAAATATAA
*
73681146 AAATTTAAAAAAAAATATAAAACATATAG
1 AAATTTAAAAAAAAATATAAAA-ATATAA
*
73681175 AAATATAAAAAA
1 AAATTTAAAAAA
73681187 TATAAAATTA
Statistics
Matches: 57, Mismatches: 7, Indels: 11
0.76 0.09 0.15
Matches are distributed among these distances:
26 12 0.21
27 3 0.05
28 3 0.05
29 26 0.46
30 13 0.23
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.31
Consensus pattern (28 bp):
AAATTTAAAAAAAAATATAAAAATATAA
Found at i:73681180 original size:17 final size:16
Alignment explanation
Indices: 73681137--73681200 Score: 62
Period size: 17 Copynumber: 4.1 Consensus size: 16
73681127 AAATTATTAT
**
73681137 AAAATATAAAA-ATTT
1 AAAATATAAAATATAA
73681152 AAAA-A-AAAATATAA
1 AAAATATAAAATATAA
*
73681166 AACATATAGAAATATAA
1 AAAATATA-AAATATAA
73681183 AAAATATAAAATTATAA
1 AAAATATAAAA-TATAA
73681200 A
1 A
73681201 TTTATAAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
13 4 0.10
14 6 0.15
15 5 0.12
16 4 0.10
17 21 0.52
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.25
Consensus pattern (16 bp):
AAAATATAAAATATAA
Found at i:73681516 original size:14 final size:15
Alignment explanation
Indices: 73681482--73681535 Score: 60
Period size: 14 Copynumber: 3.6 Consensus size: 15
73681472 TTTTTATAAA
73681482 AAATTCTAATTTTTATT
1 AAATT-TAA-TTTTATT
73681499 AAATTTAATTTT-TT
1 AAATTTAATTTTATT
73681513 AAATTT--TTTTATT
1 AAATTTAATTTTATT
73681526 AAAATTTAAT
1 -AAATTTAAT
73681536 AATTTTTATA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
12 4 0.12
13 2 0.06
14 14 0.42
15 4 0.12
16 4 0.12
17 5 0.15
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (15 bp):
AAATTTAATTTTATT
Found at i:73681560 original size:7 final size:7
Alignment explanation
Indices: 73681548--73681576 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
73681538 TTTTTATAAA
73681548 ATTTTTT
1 ATTTTTT
73681555 ATTTTTT
1 ATTTTTT
73681562 -TTTTTT
1 ATTTTTT
73681568 ATTTTTT
1 ATTTTTT
73681575 AT
1 AT
73681577 AAATTTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.29
7 15 0.71
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
ATTTTTT
Found at i:73681560 original size:19 final size:20
Alignment explanation
Indices: 73681517--73681561 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
73681507 TTTTTTAAAT
73681517 TTTTTTATTAAAATTTAATA
1 TTTTTTATTAAAATTTAATA
* **
73681537 ATTTTTA-TAAAATTTTTTA
1 TTTTTTATTAAAATTTAATA
73681556 TTTTTT
1 TTTTTT
73681562 TTTTTTATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTTTTATTAAAATTTAATA
Found at i:73681565 original size:13 final size:13
Alignment explanation
Indices: 73681549--73681574 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73681539 TTTTATAAAA
73681549 TTTTTTATTTTTT
1 TTTTTTATTTTTT
73681562 TTTTTTATTTTTT
1 TTTTTTATTTTTT
73681575 ATAAATTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (13 bp):
TTTTTTATTTTTT
Found at i:73681583 original size:21 final size:21
Alignment explanation
Indices: 73681559--73681599 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
73681549 TTTTTTATTT
* * *
73681559 TTTTTTTTTATTTTTTATAAA
1 TTTTTTCTAATTTTTAATAAA
73681580 TTTTTTCTAATTTTTAATAA
1 TTTTTTCTAATTTTTAATAA
73681600 GAGTAGGGTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (21 bp):
TTTTTTCTAATTTTTAATAAA
Found at i:73682253 original size:13 final size:13
Alignment explanation
Indices: 73682235--73682261 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
73682225 TTCTTACCCA
73682235 TTTTTTATGTTTT
1 TTTTTTATGTTTT
73682248 TTTTTTATGTTTT
1 TTTTTTATGTTTT
73682261 T
1 T
73682262 GTGATTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.00, G:0.07, T:0.85
Consensus pattern (13 bp):
TTTTTTATGTTTT
Found at i:73684533 original size:12 final size:12
Alignment explanation
Indices: 73684516--73684543 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
73684506 TGTTTAATTA
73684516 TATTAGGATAAT
1 TATTAGGATAAT
73684528 TATTAGGATAAT
1 TATTAGGATAAT
73684540 TATT
1 TATT
73684544 TAGATTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.46
Consensus pattern (12 bp):
TATTAGGATAAT
Found at i:73684575 original size:10 final size:10
Alignment explanation
Indices: 73684560--73684609 Score: 66
Period size: 10 Copynumber: 5.0 Consensus size: 10
73684550 TAAATTTAAA
*
73684560 ATTTATTTTT
1 ATTTATCTTT
73684570 ATTTATCTTT
1 ATTTATCTTT
*
73684580 AATTATCTTT
1 ATTTATCTTT
73684590 ATTTAT-TTGT
1 ATTTATCTT-T
73684600 ATTTATCTTT
1 ATTTATCTTT
73684610 GAGAATTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.22, C:0.06, G:0.02, T:0.70
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:73685646 original size:20 final size:20
Alignment explanation
Indices: 73685590--73685644 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
73685580 TGTATTTGAT
73685590 ATTAAAT-ATATATTTATTA
1 ATTAAATAATATATTTATTA
*
73685609 TTTATAA-AATATATTTATTA
1 ATTA-AATAATATATTTATTA
73685629 ATTAAATAATTATATT
1 ATTAAATAA-TATATT
73685645 ATATGATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
19 5 0.17
20 19 0.63
21 6 0.20
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
ATTAAATAATATATTTATTA
Found at i:73685855 original size:16 final size:17
Alignment explanation
Indices: 73685800--73685855 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
73685790 TGAAAAAAAA
* * *
73685800 AAGGAATGAAATAAAAG
1 AAGGAACGAAACAGAAG
* * *
73685817 AAAGAAAGAAACAGAAT
1 AAGGAACGAAACAGAAG
73685834 AAGGAACGAAACAG-AG
1 AAGGAACGAAACAGAAG
73685850 AAGGAA
1 AAGGAA
73685856 GGAGGAAAGA
Statistics
Matches: 31, Mismatches: 8, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
16 7 0.23
17 24 0.77
ACGTcount: A:0.64, C:0.05, G:0.25, T:0.05
Consensus pattern (17 bp):
AAGGAACGAAACAGAAG
Found at i:73691550 original size:15 final size:16
Alignment explanation
Indices: 73691530--73691560 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
73691520 TAATGTAAAG
73691530 TGAATTG-AAATATAT
1 TGAATTGAAAATATAT
73691545 TGAATTGAAAATATAT
1 TGAATTGAAAATATAT
73691561 ATGATTAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.48, C:0.00, G:0.13, T:0.39
Consensus pattern (16 bp):
TGAATTGAAAATATAT
Found at i:73696026 original size:21 final size:21
Alignment explanation
Indices: 73695984--73696027 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
73695974 AGAAGTTTCC
* *
73695984 AAGAATTATTTCATATATATA
1 AAGAATTATTTAATAAATATA
73696005 AAGAA-TATTTAATAAATCATA
1 AAGAATTATTTAATAAAT-ATA
73696026 AA
1 AA
73696028 ACGAAAAGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.36
Consensus pattern (21 bp):
AAGAATTATTTAATAAATATA
Found at i:73696326 original size:23 final size:23
Alignment explanation
Indices: 73696282--73696326 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
73696272 AGTCAAAAGC
*
73696282 CATTATGTATAAAAATAGATACT
1 CATTATGTATAAAAATACATACT
*
73696305 CATTAT-TATAATATATACATAC
1 CATTATGTATAA-AAATACATAC
73696327 ATATATAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.47, C:0.11, G:0.04, T:0.38
Consensus pattern (23 bp):
CATTATGTATAAAAATACATACT
Found at i:73698238 original size:44 final size:44
Alignment explanation
Indices: 73698166--73698640 Score: 627
Period size: 44 Copynumber: 10.9 Consensus size: 44
73698156 GAAATTCGTC
* * * *
73698166 ATCTTCGATTTGCTCTCTGTCAACACAGAGATTCCAAATCTGCT
1 ATCTTCGATTTGCTCTCCGCCAATACAGAGATGCCAAATCTGCT
*
73698210 ATCTTCGATCTGCTCTCCGCCAATACAGAGATGCCAAATCTGCT
1 ATCTTCGATTTGCTCTCCGCCAATACAGAGATGCCAAATCTGCT
* *
73698254 ATCTT-TATTTGCTCTCCGCCAATATAGAGATGCCAAATCTGCT
1 ATCTTCGATTTGCTCTCCGCCAATACAGAGATGCCAAATCTGCT
*
73698297 ATCTTCGATTTGCTCTCCGTCAATACAGAGATGCCAAATCTGCT
1 ATCTTCGATTTGCTCTCCGCCAATACAGAGATGCCAAATCTGCT
* * *
73698341 ATCTTCGATCTGTTCTCCGCCAATACAGAGATGCCAAAT-TGCG
1 ATCTTCGATTTGCTCTCCGCCAATACAGAGATGCCAAATCTGCT
* * **
73698384 ATCTTCGATCTGTTCTCTACCAATACAGAGATGCCAAATCTGCT
1 ATCTTCGATTTGCTCTCCGCCAATACAGAGATGCCAAATCTGCT
* * * *
73698428 ATCTTTGA-TTGCTCTCTGCCAATACAGAGACGCTAAATCTG-T
1 ATCTTCGATTTGCTCTCCGCCAATACAGAGATGCCAAATCTGCT
* *
73698470 GATCTTCGATTTGCTCTCC-CGAATACAGAGATACCAAATCTGCT
1 -ATCTTCGATTTGCTCTCCGCCAATACAGAGATGCCAAATCTGCT
* * * *
73698514 ATCTTTGATTTGCTCTTCGCCAATACATAGACGCCAAATCTGCT
1 ATCTTCGATTTGCTCTCCGCCAATACAGAGATGCCAAATCTGCT
* * **
73698558 ATCTTCGATCTGCTCTCCGCTAATACAGAGATGCCAAATCTGAG
1 ATCTTCGATTTGCTCTCCGCCAATACAGAGATGCCAAATCTGCT
* *
73698602 ATCTTCGATATGCTCTCTGCCAATACAGAGATGCCAAAT
1 ATCTTCGATTTGCTCTCCGCCAATACAGAGATGCCAAAT
73698641 TTGCGGGATT
Statistics
Matches: 378, Mismatches: 47, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
42 1 0.00
43 150 0.40
44 227 0.60
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (44 bp):
ATCTTCGATTTGCTCTCCGCCAATACAGAGATGCCAAATCTGCT
Found at i:73698290 original size:87 final size:87
Alignment explanation
Indices: 73698173--73698640 Score: 602
Period size: 87 Copynumber: 5.4 Consensus size: 87
73698163 GTCATCTTCG
* * * *
73698173 ATTTGCTCTCTGTCAACACAGAGATTCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAG
1 ATTTGCTCTCCGCCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAG
73698238 AGATGCCAAATCTGCTATCTTT
66 AGATGCCAAATCTGCTATCTTT
* * *
73698260 ATTTGCTCTCCGCCAATATAGAGATGCCAAATCTGCTATCTTCGATTTGCTCTCCGTCAATACAG
1 ATTTGCTCTCCGCCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAG
*
73698325 AGATGCCAAATCTGCTATCTTCG
66 AGATGCCAAATCTGCTATCTT-T
* * * * **
73698348 ATCTGTTCTCCGCCAATACAGAGATGCCAAAT-TGCGATCTTCGATCTGTTCTCTACCAATACAG
1 ATTTGCTCTCCGCCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAG
73698412 AGATGCCAAATCTGCTATCTTT
66 AGATGCCAAATCTGCTATCTTT
* * * * *
73698434 GA-TTGCTCTCTGCCAATACAGAGACGCTAAATCTG-TGATCTTCGATTTGCTCTCC-CGAATAC
1 -ATTTGCTCTCCGCCAATACAGAGATGCCAAATCTGCT-ATCTTCGATCTGCTCTCCGCCAATAC
*
73698496 AGAGATACCAAATCTGCTATCTTT
64 AGAGATGCCAAATCTGCTATCTTT
* * * *
73698520 GATTTGCTCTTCGCCAATACATAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCTAATACA
1 -ATTTGCTCTCCGCCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACA
** *
73698585 GAGATGCCAAATCTGAGATCTTCG
65 GAGATGCCAAATCTGCTATCTT-T
* *
73698609 ATATGCTCTCTGCCAATACAGAGATGCCAAAT
1 ATTTGCTCTCCGCCAATACAGAGATGCCAAAT
73698641 TTGCGGGATT
Statistics
Matches: 329, Mismatches: 44, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
86 56 0.17
87 190 0.58
88 83 0.25
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (87 bp):
ATTTGCTCTCCGCCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAG
AGATGCCAAATCTGCTATCTTT
Found at i:73698407 original size:131 final size:131
Alignment explanation
Indices: 73698166--73698640 Score: 629
Period size: 131 Copynumber: 3.6 Consensus size: 131
73698156 GAAATTCGTC
* * *
73698166 ATCTTCGATTTGCTCTCTGTCAACACAGAGATTCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
1 ATCTTCGATTTGCTCTCCGTCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
* * *
73698231 AATACAGAGATGCCAAATCTGCTATCTTTATTTGCTCTCCGCCAATATAGAGATGCCAAATCTGC
66 AATACAGAGATGCCAAATCTGCTATCTTGATTTGCTCTCTGCCAATACAGAGATGCCAAATCTGC
73698296 T
131 T
*
73698297 ATCTTCGATTTGCTCTCCGTCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGTTCTCCGCC
1 ATCTTCGATTTGCTCTCCGTCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
* * * *
73698362 AATACAGAGATGCCAAAT-TGCGATCTTCGATCTGTTCTCTACCAATACAGAGATGCCAAATCTG
66 AATACAGAGATGCCAAATCTGCTATCTT-GATTTGCTCTCTGCCAATACAGAGATGCCAAATCTG
73698426 CT
130 CT
* * * * * *
73698428 ATCTTTGA-TTGCTCTCTGCCAATACAGAGACGCTAAATCTG-TGATCTTCGATTTGCTCTCC-C
1 ATCTTCGATTTGCTCTCCGTCAATACAGAGATGCCAAATCTGCT-ATCTTCGATCTGCTCTCCGC
* * * *
73698490 GAATACAGAGATACCAAATCTGCTATCTTTGATTTGCTCT-TCGCCAATACATAGACGCCAAATC
65 CAATACAGAGATGCCAAATCTGCTATC-TTGATTTGCTCTCT-GCCAATACAGAGATGCCAAATC
73698554 TGCT
128 TGCT
* ** * *
73698558 ATCTTCGATCTGCTCTCCG-CTAATACAGAGATGCCAAATCTGAGATCTTCGATATGCTCTCTGC
1 ATCTTCGATTTGCTCTCCGTC-AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
73698622 CAATACAGAGATGCCAAAT
65 CAATACAGAGATGCCAAAT
73698641 TTGCGGGATT
Statistics
Matches: 299, Mismatches: 36, Indels: 17
0.85 0.10 0.05
Matches are distributed among these distances:
129 20 0.07
130 98 0.33
131 163 0.55
132 18 0.06
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (131 bp):
ATCTTCGATTTGCTCTCCGTCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
AATACAGAGATGCCAAATCTGCTATCTTGATTTGCTCTCTGCCAATACAGAGATGCCAAATCTGC
T
Found at i:73717009 original size:42 final size:42
Alignment explanation
Indices: 73716950--73717072 Score: 140
Period size: 42 Copynumber: 2.9 Consensus size: 42
73716940 ACTAGGGTTA
* * *
73716950 ATGAGACTTCGTGTAAGACCATATCTGGGATATGGCATCGAT
1 ATGAGACTTCATGTAAGACCATATCTGGGATATGGCATCAAC
* * *
73716992 ATGAGACTTCATATAAGACCATAGCTGGGCTATTGGCATCAAC
1 ATGAGACTTCATGTAAGACCATATCTGGGATA-TGGCATCAAC
* * *
73717035 ACGAGA-TTGCATGTAAAACCATATCTGGAATATGGCAT
1 ATGAGACTT-CATGTAAGACCATATCTGGGATATGGCAT
73717073 TGGTATGGTA
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
42 36 0.54
43 31 0.46
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.27
Consensus pattern (42 bp):
ATGAGACTTCATGTAAGACCATATCTGGGATATGGCATCAAC
Found at i:73720326 original size:40 final size:40
Alignment explanation
Indices: 73720271--73720478 Score: 303
Period size: 40 Copynumber: 5.2 Consensus size: 40
73720261 TGAATGATAC
* * *
73720271 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
73720311 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
73720351 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
73720391 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
73720431 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
73720471 CC-GGCTAA
1 CCGGGCTAA
73720479 ATTCCGAAGA
Statistics
Matches: 154, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 5 0.03
40 147 0.95
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:73728531 original size:40 final size:40
Alignment explanation
Indices: 73728476--73728683 Score: 303
Period size: 40 Copynumber: 5.2 Consensus size: 40
73728466 TGAATGATAC
* * *
73728476 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
73728516 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
73728556 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
73728596 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
73728636 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
73728676 CC-GGCTAA
1 CCGGGCTAA
73728684 ATTCCGAAGA
Statistics
Matches: 154, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 5 0.03
40 147 0.95
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:73729368 original size:21 final size:21
Alignment explanation
Indices: 73729343--73729385 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
73729333 TGATCATATG
73729343 TGGACCTATGTATGACAAAAC
1 TGGACCTATGTATGACAAAAC
73729364 TGGACCTATGTATGACAAAAC
1 TGGACCTATGTATGACAAAAC
73729385 T
1 T
73729386 CTAGGTCCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (21 bp):
TGGACCTATGTATGACAAAAC
Found at i:73733713 original size:22 final size:22
Alignment explanation
Indices: 73733687--73733742 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
73733677 ATTTTTATCC
73733687 CTTAATTTTCACGATATTTTCT
1 CTTAATTTTCACGATATTTTCT
*
73733709 CTTAACTTTT-ACGTTATTTTCT
1 CTTAA-TTTTCACGATATTTTCT
*
73733731 CTTAACTTTCAC
1 CTTAATTTTCAC
73733743 ATTTTCTTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 3 0.10
22 23 0.77
23 4 0.13
ACGTcount: A:0.21, C:0.21, G:0.04, T:0.54
Consensus pattern (22 bp):
CTTAATTTTCACGATATTTTCT
Found at i:73740985 original size:17 final size:18
Alignment explanation
Indices: 73740937--73740987 Score: 50
Period size: 21 Copynumber: 2.7 Consensus size: 18
73740927 GAATAATTAC
*
73740937 AAAATAGAATTAAATCAAT
1 AAAATAGAAATAAATC-AT
*
73740956 ACAAAGTATAAATAAATC-T
1 A-AAA-TAGAAATAAATCAT
73740975 AAAATAGAAATAA
1 AAAATAGAAATAA
73740988 TTCAAGCTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
17 8 0.30
18 3 0.11
19 3 0.11
20 3 0.11
21 10 0.37
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.24
Consensus pattern (18 bp):
AAAATAGAAATAAATCAT
Found at i:73742110 original size:136 final size:137
Alignment explanation
Indices: 73741863--73742148 Score: 529
Period size: 136 Copynumber: 2.1 Consensus size: 137
73741853 CATTGGGCCT
**
73741863 AAGCCCATTCAGGTAACAGTGGTACTCGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTCGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
73741928 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTAAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTAAAAATACATGCAACATCAGTAAA
73741993 CATATGC
131 CATATGC
*
73742000 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAA-TGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTCGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
73742064 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTAAAAATACATGCAACATCAGTAAA
73742129 CATATGC
131 CATATGC
73742136 AAGCCCATTTGGG
1 AAGCCCATTTGGG
73742149 GAGACTACTC
Statistics
Matches: 145, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
136 92 0.63
137 53 0.37
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTCGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTAAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:73743962 original size:26 final size:26
Alignment explanation
Indices: 73743931--73744038 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
73743921 TGAAATGTCC
*
73743931 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
73743957 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
73743983 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
73744009 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
73744035 ATCA
1 ATCA
73744039 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:73749255 original size:137 final size:137
Alignment explanation
Indices: 73749007--73749293 Score: 529
Period size: 137 Copynumber: 2.1 Consensus size: 137
73748997 CATTGGGCCT
**
73749007 AAGCCCATTCAGGTAACAGTGGTACTCGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTCGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
73749072 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTAAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTAAAAATACATGCAACATCAGTAAA
73749137 CATATGC
131 CATATGC
* *
73749144 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAATTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTCGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
73749209 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTAAAAATACATGCAACATCAGTAAA
73749274 CATATGC
131 CATATGC
73749281 AAGCCCATTTGGG
1 AAGCCCATTTGGG
73749294 GAGACTACTC
Statistics
Matches: 145, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 145 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTCGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTAAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:73751100 original size:26 final size:26
Alignment explanation
Indices: 73751069--73751176 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
73751059 TGAAATGCCC
73751069 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
73751095 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
73751121 ATCATGGAATATTTACCTAATA-CATT
1 ATCATGGAACATTTACCTAA-ACCATT
*
73751147 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
73751173 ATCA
1 ATCA
73751177 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:73751147 original size:52 final size:52
Alignment explanation
Indices: 73751069--73751176 Score: 191
Period size: 52 Copynumber: 2.1 Consensus size: 52
73751059 TGAAATGCCC
73751069 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
*
73751121 ATCATGGAATATTTACCTAATA-CATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAA-ACCATTATCATGGAACATTTACCTAACCCATT
73751173 ATCA
1 ATCA
73751177 ATTTGTACCA
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
52 53 0.98
53 1 0.02
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.32
Consensus pattern (52 bp):
ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
Found at i:73752185 original size:20 final size:20
Alignment explanation
Indices: 73752160--73752200 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
73752150 TAAATTCGTG
73752160 TTTGTACATCAATAAGTCTT
1 TTTGTACATCAATAAGTCTT
73752180 TTTGTACATCAATAAGTCTT
1 TTTGTACATCAATAAGTCTT
73752200 T
1 T
73752201 ATAATGTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.15, G:0.10, T:0.46
Consensus pattern (20 bp):
TTTGTACATCAATAAGTCTT
Found at i:73755435 original size:18 final size:20
Alignment explanation
Indices: 73755409--73755459 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 20
73755399 ATATATAAAA
73755409 TTTGAAATTTTTATAAA-TAT
1 TTTG-AATTTTTATAAATTAT
*
73755429 TTT-AA-TTTTAAAAATTAT
1 TTTGAATTTTTATAAATTAT
73755447 TTTGAATTTTTAT
1 TTTGAATTTTTAT
73755460 TTTATTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
17 8 0.31
18 8 0.31
19 2 0.08
20 8 0.31
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (20 bp):
TTTGAATTTTTATAAATTAT
Found at i:73775819 original size:49 final size:49
Alignment explanation
Indices: 73775750--73776147 Score: 715
Period size: 49 Copynumber: 8.1 Consensus size: 49
73775740 GTACATAATA
* * *
73775750 ATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
73775799 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
* *
73775848 ATACATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
*
73775897 ATACATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
*
73775946 ATACATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
73775995 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
* *
73776044 ATATATGTGATAAGGCCTAATGGCCAACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
73776093 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
73776142 ATATAT
1 ATATAT
73776148 ATATGTGGTA
Statistics
Matches: 338, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 338 1.00
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
Found at i:73776273 original size:37 final size:36
Alignment explanation
Indices: 73776218--73776304 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
73776208 AATTTGGAAA
73776218 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
73776256 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
73776293 TATGTCCGGGTA
1 TATGTCCGGGTA
73776305 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:73779426 original size:6 final size:6
Alignment explanation
Indices: 73779415--73779474 Score: 120
Period size: 6 Copynumber: 10.0 Consensus size: 6
73779405 GCTCCACCTT
73779415 CATACA CATACA CATACA CATACA CATACA CATACA CATACA CATACA
1 CATACA CATACA CATACA CATACA CATACA CATACA CATACA CATACA
73779463 CATACA CATACA
1 CATACA CATACA
73779475 TAAAGCCATA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 54 1.00
ACGTcount: A:0.50, C:0.33, G:0.00, T:0.17
Consensus pattern (6 bp):
CATACA
Found at i:73780020 original size:9 final size:9
Alignment explanation
Indices: 73779989--73780107 Score: 53
Period size: 9 Copynumber: 12.6 Consensus size: 9
73779979 TTTTTCTCAT
73779989 TAAAAAATA
1 TAAAAAATA
73779998 TAAAAGAATTTA
1 TAAAA-AA--TA
73780010 TAAAAAATA
1 TAAAAAATA
*
73780019 TAAAATAT-
1 TAAAAAATA
**
73780027 TAAAATTTA
1 TAAAAAATA
* *
73780036 T-ATAAATT
1 TAAAAAATA
* *
73780044 TATAAAATTG
1 TA-AAAAATA
73780054 TAAAAAAAGTCA
1 T-AAAAAA-T-A
73780066 TAAAAAATTA
1 TAAAAAA-TA
*
73780076 TAAAAATTA
1 TAAAAAATA
* * *
73780085 TTATAATTA
1 TAAAAAATA
73780094 TAAAAAATA
1 TAAAAAATA
73780103 TAAAA
1 TAAAA
73780108 TTAATAAAAC
Statistics
Matches: 83, Mismatches: 18, Indels: 18
0.70 0.15 0.15
Matches are distributed among these distances:
8 11 0.13
9 35 0.42
10 18 0.22
11 11 0.13
12 8 0.10
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.33
Consensus pattern (9 bp):
TAAAAAATA
Found at i:73780044 original size:10 final size:9
Alignment explanation
Indices: 73780004--73780116 Score: 59
Period size: 9 Copynumber: 12.2 Consensus size: 9
73779994 AATATAAAAG
73780004 AATTTATAA
1 AATTTATAA
**
73780013 AAAATATAA
1 AATTTATAA
*
73780022 AATAT-TAA
1 AATTTATAA
73780030 AATTTATATA
1 AATTTATA-A
73780040 AATTTATAA
1 AATTTATAA
*
73780049 AATTGTAAAAA
1 AATT-T-ATAA
* *
73780060 AAGTCATAAA
1 AATTTAT-AA
*
73780070 AAATTATAA
1 AATTTATAA
* *
73780079 AAATTATTAT
1 AATTTA-TAA
73780089 AA-TTATAA
1 AATTTATAA
**
73780097 AAAATATAA
1 AATTTATAA
*
73780106 AATTAATAA
1 AATTTATAA
73780115 AA
1 AA
73780117 CATATTTGAT
Statistics
Matches: 81, Mismatches: 16, Indels: 14
0.73 0.14 0.13
Matches are distributed among these distances:
8 11 0.14
9 43 0.53
10 21 0.26
11 6 0.07
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.35
Consensus pattern (9 bp):
AATTTATAA
Found at i:73780176 original size:11 final size:11
Alignment explanation
Indices: 73780152--73780216 Score: 59
Period size: 10 Copynumber: 6.3 Consensus size: 11
73780142 TAAGGCTTAT
73780152 AAAAATTCATAA
1 AAAAATT-ATAA
73780164 AAAAA-TAT--
1 AAAAATTATAA
73780172 AAAAATTA-AA
1 AAAAATTATAA
* *
73780182 TAAAATTGTAA
1 AAAAATTATAA
*
73780193 TAAAA-TATAA
1 AAAAATTATAA
73780203 AAAAATTATAA
1 AAAAATTATAA
73780214 AAA
1 AAA
73780217 CTATTGAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
8 5 0.11
9 2 0.05
10 16 0.36
11 16 0.36
12 5 0.11
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.26
Consensus pattern (11 bp):
AAAAATTATAA
Found at i:73780720 original size:11 final size:10
Alignment explanation
Indices: 73780696--73780738 Score: 58
Period size: 9 Copynumber: 4.7 Consensus size: 10
73780686 CGATAAATGA
73780696 ATTTTTATA-
1 ATTTTTATAT
73780705 ATTTTTATAT
1 ATTTTTATAT
73780715 ATTTTTA-AT
1 ATTTTTATAT
73780724 A-TTTTATA-
1 ATTTTTATAT
73780732 ATTTTTA
1 ATTTTTA
73780739 AAAAATAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
8 6 0.19
9 18 0.58
10 7 0.23
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
ATTTTTATAT
Found at i:73780735 original size:17 final size:17
Alignment explanation
Indices: 73780698--73780739 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 17
73780688 ATAAATGAAT
73780698 TTTTATAATTTTTATATA
1 TTTT-TAATTTTTATATA
73780716 TTTTTAATATTTTATA-A
1 TTTTTAAT-TTTTATATA
73780733 TTTTTAA
1 TTTTTAA
73780740 AAAATAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTTAATTTTTATATA
Found at i:73780925 original size:21 final size:20
Alignment explanation
Indices: 73780876--73780926 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 20
73780866 TATTTTTTTC
*
73780876 AAATTTTTTGTAAGGTTTTATA
1 AAATTTTTTG-AA-ATTTTATA
*
73780898 ATA-TTTTTGAAATTTTATGA
1 AAATTTTTTGAAATTTTAT-A
73780918 AAATTTTTT
1 AAATTTTTT
73780927 ATAATTTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
19 6 0.25
20 5 0.21
21 11 0.46
22 2 0.08
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (20 bp):
AAATTTTTTGAAATTTTATA
Found at i:73780932 original size:10 final size:10
Alignment explanation
Indices: 73780791--73780935 Score: 50
Period size: 10 Copynumber: 14.3 Consensus size: 10
73780781 TTTGAATTTA
**
73780791 TTTTATAAGG
1 TTTTATAATT
73780801 TTTTATAAATT
1 TTTTAT-AATT
* *
73780812 TTTTATTA-G
1 TTTTATAATT
73780821 TTTTATAATT
1 TTTTATAATT
* *
73780831 ATTGATAA-T
1 TTTTATAATT
*
73780840 TATTATAATT
1 TTTTATAATT
73780850 TTATTATATGATT
1 TT-TTATA--ATT
**
73780863 CATTAT--TT
1 TTTTATAATT
73780871 TTTTCA-AATT
1 TTTT-ATAATT
* **
73780881 TTTTGTAAGG
1 TTTTATAATT
73780891 TTTTATAATAT
1 TTTTATAAT-T
73780902 TTTTGA-AATT
1 TTTT-ATAATT
* *
73780912 TTATGAAAATT
1 TT-TTATAATT
73780923 TTTTATAATT
1 TTTTATAATT
73780933 TTT
1 TTT
73780936 CTAAGCGTGT
Statistics
Matches: 96, Mismatches: 25, Indels: 28
0.64 0.17 0.19
Matches are distributed among these distances:
8 4 0.04
9 14 0.15
10 43 0.45
11 27 0.28
12 5 0.05
13 3 0.03
ACGTcount: A:0.32, C:0.01, G:0.07, T:0.60
Consensus pattern (10 bp):
TTTTATAATT
Found at i:73780932 original size:21 final size:20
Alignment explanation
Indices: 73780876--73780934 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
73780866 TATTTTTTTC
*
73780876 AAATTTTTTGTAAGGTTTTATA
1 AAATTTTTTATAA--TTTTATA
* *
73780898 ATATTTTTGA-AATTTTATGA
1 AAATTTTTTATAATTTTAT-A
73780918 AAATTTTTTATAATTTT
1 AAATTTTTTATAATTTT
73780935 TCTAAGCGTG
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
19 6 0.20
20 9 0.30
21 8 0.27
22 7 0.23
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (20 bp):
AAATTTTTTATAATTTTATA
Found at i:73781154 original size:12 final size:11
Alignment explanation
Indices: 73781127--73781215 Score: 55
Period size: 11 Copynumber: 8.5 Consensus size: 11
73781117 ATTTTTTTGG
73781127 ATTTTTTATAA
1 ATTTTTTATAA
*
73781138 GTTTTTTATAA
1 ATTTTTTATAA
*
73781149 A-ATTTTA-AA
1 ATTTTTTATAA
* *
73781158 TATTATTTATTA
1 -ATTTTTTATAA
73781170 A--TTTTATAA
1 ATTTTTTATAA
**
73781179 ATTTTCAAT-A
1 ATTTTTTATAA
* *
73781189 ATTTATTA-CA
1 ATTTTTTATAA
73781199 ATTTTTTATAA
1 ATTTTTTATAA
73781210 ATTTTT
1 ATTTTT
73781216 AAATATTTTT
Statistics
Matches: 56, Mismatches: 15, Indels: 14
0.66 0.18 0.16
Matches are distributed among these distances:
9 9 0.16
10 20 0.36
11 26 0.46
12 1 0.02
ACGTcount: A:0.37, C:0.02, G:0.01, T:0.60
Consensus pattern (11 bp):
ATTTTTTATAA
Found at i:73781206 original size:31 final size:30
Alignment explanation
Indices: 73781131--73781227 Score: 94
Period size: 29 Copynumber: 3.2 Consensus size: 30
73781121 TTTTGGATTT
73781131 TTTA-TAAGTTTTTTATAAAATTTTAAATATTA
1 TTTATTAA-TTTTTTAT-AAATTTTAAATA-TA
*
73781163 TTTATTAA--TTTTATAAATTTTCAATA-A
1 TTTATTAATTTTTTATAAATTTTAAATATA
*
73781190 TTTATTACAATTTTTTATAAATTTTTAAATATT
1 TTTATT--AATTTTTTATAAA-TTTTAAATATA
73781223 TTTAT
1 TTTAT
73781228 AGTTGTTAAT
Statistics
Matches: 55, Mismatches: 3, Indels: 13
0.77 0.04 0.18
Matches are distributed among these distances:
27 7 0.13
29 13 0.24
30 6 0.11
31 9 0.16
32 12 0.22
33 8 0.15
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.59
Consensus pattern (30 bp):
TTTATTAATTTTTTATAAATTTTAAATATA
Found at i:73781209 original size:20 final size:18
Alignment explanation
Indices: 73781098--73781228 Score: 75
Period size: 20 Copynumber: 6.5 Consensus size: 18
73781088 TTTTACATTT
*
73781098 TTTTTTATGATTTATTAGAA
1 TTTTTTATAATTT-TTA-AA
*
73781118 TTTTTT-TGGATTTTTTATAA
1 TTTTTTAT--AATTTTTA-AA
*
73781138 GTTTTTTATAAAATTTTAAA
1 -TTTTTTAT-AATTTTTAAA
73781158 TATTATTTATTAATTTTATAAA
1 T-TT-TTTA-TAATTTT-TAAA
**
73781180 TTTTCAATAATTTATTACAA
1 TTTTTTATAATTT-TTA-AA
73781200 TTTTTTATAAATTTTTAAA
1 TTTTTTAT-AATTTTTAAA
73781219 TATTTTTATA
1 T-TTTTTATA
73781229 GTTGTTAATA
Statistics
Matches: 88, Mismatches: 11, Indels: 25
0.71 0.09 0.20
Matches are distributed among these distances:
19 14 0.16
20 36 0.41
21 31 0.35
22 7 0.08
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (18 bp):
TTTTTTATAATTTTTAAA
Found at i:73781214 original size:10 final size:10
Alignment explanation
Indices: 73781129--73781228 Score: 64
Period size: 10 Copynumber: 9.8 Consensus size: 10
73781119 TTTTTTGGAT
*
73781129 TTTTTATAAGT
1 TTTTTATAA-A
73781140 TTTTTATAAA
1 TTTTTATAAA
*
73781150 ATTTTA-AATA
1 TTTTTATAA-A
*
73781160 TTATTTATTAA
1 TT-TTTATAAA
73781171 -TTTTATAAA
1 TTTTTATAAA
*
73781180 TTTTCA-ATAA
1 TTTTTATA-AA
* *
73781190 TTTATTACAAT
1 TTT-TTATAAA
73781201 TTTTTATAAA
1 TTTTTATAAA
73781211 TTTTTA-AATA
1 TTTTTATAA-A
73781221 TTTTTATA
1 TTTTTATA
73781229 GTTGTTAATA
Statistics
Matches: 70, Mismatches: 10, Indels: 18
0.71 0.10 0.18
Matches are distributed among these distances:
9 12 0.17
10 35 0.50
11 21 0.30
12 2 0.03
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.59
Consensus pattern (10 bp):
TTTTTATAAA
Found at i:73786730 original size:110 final size:104
Alignment explanation
Indices: 73786521--73786732 Score: 257
Period size: 110 Copynumber: 2.0 Consensus size: 104
73786511 TTTTATGTTG
* * *
73786521 TTTTTAATTTATTTTAAAGTAATTTTGTTAGTAACTATTATAAATTATTTGTTTAGTTTAATGTT
1 TTTTTAATTTATTTTAAAGTAATTTTGTTAATAACTATTATAAATTATTTCTTTAGTTTAATATT
*
73786586 TATTGTGATTTGTTAGATTATGAATGTAATTTTTTTTGT
66 TATTGTGATTTGTTAGAGTATGAATGTAATTTTTTTTGT
* * *
73786625 TTTTTAATTTATTTTAAAGTTATTTTGTTAATAACTTTTTATTAGGTTAATTATTTCTTTGGTTT
1 TTTTTAATTTATTTTAAAGTAATTTTGTTAATAAC----TATTA--TAAATTATTTCTTTAGTTT
* * *
73786690 AATATTTATTGTGATTTTTTATGAGTGT-AAT-TATTTTTTTTTG
60 AATATTTATTGTGATTTGTTA-GAGTATGAATGTAATTTTTTTTG
73786733 ATTTATTGAG
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
104 33 0.36
108 5 0.05
109 11 0.12
110 38 0.42
111 4 0.04
ACGTcount: A:0.26, C:0.01, G:0.12, T:0.61
Consensus pattern (104 bp):
TTTTTAATTTATTTTAAAGTAATTTTGTTAATAACTATTATAAATTATTTCTTTAGTTTAATATT
TATTGTGATTTGTTAGAGTATGAATGTAATTTTTTTTGT
Found at i:73793096 original size:18 final size:18
Alignment explanation
Indices: 73793070--73793109 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
73793060 CTTTCTTTTC
73793070 TCTTTTTTCTTCT-CCTT
1 TCTTTTTTCTTCTCCCTT
73793087 TCTTTCTTTCTTCTCCCTT
1 TCTTT-TTTCTTCTCCCTT
73793106 TCTT
1 TCTT
73793110 CTTCTCTGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 5 0.24
18 8 0.38
19 8 0.38
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.68
Consensus pattern (18 bp):
TCTTTTTTCTTCTCCCTT
Found at i:73793106 original size:11 final size:10
Alignment explanation
Indices: 73793075--73793111 Score: 51
Period size: 11 Copynumber: 3.8 Consensus size: 10
73793065 TTTTCTCTTT
73793075 TTTCTTCTCC
1 TTTCTTCTCC
73793085 TTTCTT-T-C
1 TTTCTTCTCC
73793093 TTTCTTCTCCC
1 TTTCTTCT-CC
73793104 TTTCTTCT
1 TTTCTTCT
73793112 TCTCTGCTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
8 7 0.29
9 2 0.08
10 6 0.25
11 9 0.38
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (10 bp):
TTTCTTCTCC
Found at i:73793111 original size:14 final size:15
Alignment explanation
Indices: 73793058--73793115 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 15
73793048 ATTTCTCTTC
* *
73793058 TTCTTTCTTTTCTCT
1 TTCTTTCTTCTCCCT
73793073 TT-TTTCTTCTCCTTTCT
1 TTCTTTCTTCTCC---CT
73793090 TTCTTTCTTCTCCCT
1 TTCTTTCTTCTCCCT
73793105 TTC-TTCTTCTC
1 TTCTTTCTTCTC
73793116 TGCTGCTGGT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
14 16 0.43
15 7 0.19
17 4 0.11
18 10 0.27
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (15 bp):
TTCTTTCTTCTCCCT
Found at i:73797901 original size:10 final size:10
Alignment explanation
Indices: 73797878--73797937 Score: 57
Period size: 10 Copynumber: 5.9 Consensus size: 10
73797868 ATTTTAGGAT
* *
73797878 TTATTTTCAT
1 TTATTTTTAA
73797888 TTATTTTTAA
1 TTATTTTTAA
*
73797898 TTATCTTTAA
1 TTATTTTTAA
*
73797908 TTATCTTTAA
1 TTATTTTTAA
* *
73797918 TTATTTGTAT
1 TTATTTTTAA
73797928 TTATCTTTTA
1 TTAT-TTTTA
73797938 GAATTTAATT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
10 38 0.90
11 4 0.10
ACGTcount: A:0.25, C:0.07, G:0.02, T:0.67
Consensus pattern (10 bp):
TTATTTTTAA
Found at i:73797911 original size:20 final size:20
Alignment explanation
Indices: 73797878--73797935 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
73797868 ATTTTAGGAT
* *
73797878 TTATTTTCATTTATTTTTAA
1 TTATTTTTATTTATCTTTAA
* *
73797898 TTATCTTTAATTATCTTTAA
1 TTATTTTTATTTATCTTTAA
*
73797918 TTATTTGTATTTATCTTT
1 TTATTTTTATTTATCTTT
73797936 TAGAATTTAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (20 bp):
TTATTTTTATTTATCTTTAA
Found at i:73804224 original size:15 final size:15
Alignment explanation
Indices: 73804204--73804234 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
73804194 TAGTCACACT
73804204 ATAACATCAATTCTG
1 ATAACATCAATTCTG
73804219 ATAACATCAATTCTG
1 ATAACATCAATTCTG
73804234 A
1 A
73804235 CATGGTGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.19, G:0.06, T:0.32
Consensus pattern (15 bp):
ATAACATCAATTCTG
Found at i:73805490 original size:84 final size:84
Alignment explanation
Indices: 73805349--73805600 Score: 452
Period size: 84 Copynumber: 3.0 Consensus size: 84
73805339 AGAGAAAAAA
73805349 AACTCCTAACCCCTCCATTTCCTACCCACTATTAATTTTTTTTGTTATATGTTGTAGGATGAGTA
1 AACTCCTAACCCCTCCATTTCCTACCCACTATTAATTTTTTTTGTTATATGTTGTAGGATGAGTA
*
73805414 ATTGTTGGTAATTTTAAGT
66 ATTGTTCGTAATTTTAAGT
*
73805433 AACTCCTAACCCCTTCATTTCCTACCCACTATTAATTTTTTTTGTTATATGTTGTAGGATGAGTA
1 AACTCCTAACCCCTCCATTTCCTACCCACTATTAATTTTTTTTGTTATATGTTGTAGGATGAGTA
*
73805498 ATTGTTCATAATTTTAAGT
66 ATTGTTCGTAATTTTAAGT
*
73805517 AACTCCTAACCCCTCCATTTCCTATCCACTATTAA-TTTTTTTGTTATATGTTGTAGGATGAGTA
1 AACTCCTAACCCCTCCATTTCCTACCCACTATTAATTTTTTTTGTTATATGTTGTAGGATGAGTA
*
73805581 ATTGTTCGTAATTGTAAGT
66 ATTGTTCGTAATTTTAAGT
73805600 A
1 A
73805601 TTTTTTTTTG
Statistics
Matches: 161, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
83 47 0.29
84 114 0.71
ACGTcount: A:0.26, C:0.18, G:0.12, T:0.44
Consensus pattern (84 bp):
AACTCCTAACCCCTCCATTTCCTACCCACTATTAATTTTTTTTGTTATATGTTGTAGGATGAGTA
ATTGTTCGTAATTTTAAGT
Found at i:73812766 original size:47 final size:45
Alignment explanation
Indices: 73812714--73812890 Score: 160
Period size: 47 Copynumber: 3.8 Consensus size: 45
73812704 TATTTGGGCA
73812714 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATATGAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA-ATGAAA-G
* * *** * **
73812761 TCCGAACTAGTTAAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGAA-T-GAAAG
* *
73812808 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG-ATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAATG-AAA-G
* * *
73812854 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73812891 GCAGGTTACA
Statistics
Matches: 105, Mismatches: 19, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 40 0.38
47 53 0.50
48 6 0.06
49 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAATGAAAG
Found at i:73823877 original size:27 final size:27
Alignment explanation
Indices: 73823839--73823893 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
73823829 TTACACAAAG
*
73823839 TGTGTCTTTACATATAACCATAACATT
1 TGTGTCTTTACATAGAACCATAACATT
73823866 TGTGTCTTTACATAGAACCATAACATT
1 TGTGTCTTTACATAGAACCATAACATT
73823893 T
1 T
73823894 CCTTTACATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.18, G:0.09, T:0.40
Consensus pattern (27 bp):
TGTGTCTTTACATAGAACCATAACATT
Found at i:73830873 original size:50 final size:52
Alignment explanation
Indices: 73830770--73830890 Score: 183
Period size: 50 Copynumber: 2.4 Consensus size: 52
73830760 AAGAAAAAAT
* *
73830770 GAGTTACTTAATGCATGACTTAATTTAGTGATGCAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGACATAATTTAGTGATGCAAACTTTAACTAACATGG
* * *
73830822 GAGTTACATAATACATGTCATAATTTA-TGATGCAAAC-TTAACTTACATGG
1 GAGTTACATAATGCATGACATAATTTAGTGATGCAAACTTTAACTAACATGG
73830872 GAGTTACATAATGCATGAC
1 GAGTTACATAATGCATGAC
73830891 TTTATTAAAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 29 0.47
51 10 0.16
52 23 0.37
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (52 bp):
GAGTTACATAATGCATGACATAATTTAGTGATGCAAACTTTAACTAACATGG
Found at i:73832646 original size:18 final size:18
Alignment explanation
Indices: 73832625--73832664 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
73832615 TTCTACTTTC
*
73832625 TTTTCTTTCTCATAT-TCT
1 TTTTCGTTCTCA-ATCTCT
73832643 TTTTCGTTCTCAATCTCT
1 TTTTCGTTCTCAATCTCT
73832661 TTTT
1 TTTT
73832665 GCTCTCGTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 2 0.10
18 18 0.90
ACGTcount: A:0.10, C:0.23, G:0.03, T:0.65
Consensus pattern (18 bp):
TTTTCGTTCTCAATCTCT
Found at i:73832717 original size:27 final size:27
Alignment explanation
Indices: 73832660--73832726 Score: 66
Period size: 27 Copynumber: 2.6 Consensus size: 27
73832650 TCTCAATCTC
* * * *
73832660 TTTTTGCTCTCGTTCATTCTCTTTTCC
1 TTTTTGCTTTCTTTTATTCTCTTTTCA
* *
73832687 TTTTTGCTTTCTTTTATTCTTTTTTGA
1 TTTTTGCTTTCTTTTATTCTCTTTTCA
73832714 TTTTT--TTTCTTTT
1 TTTTTGCTTTCTTTT
73832727 TCATATGCTT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 8 0.24
27 26 0.76
ACGTcount: A:0.04, C:0.18, G:0.06, T:0.72
Consensus pattern (27 bp):
TTTTTGCTTTCTTTTATTCTCTTTTCA
Found at i:73835169 original size:35 final size:35
Alignment explanation
Indices: 73835075--73835179 Score: 128
Period size: 35 Copynumber: 3.0 Consensus size: 35
73835065 TTAACCCGGG
*
73835075 TATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGA
1 TATAACAACTCGCACAAATGCCTTCGGGTCTTA-----GA
73835115 TATAACAA----CACAAATGCCTTCGGGTCTTAGA
1 TATAACAACTCGCACAAATGCCTTCGGGTCTTAGA
73835146 TATAACAACTCGCACAAATGCCTTCGGGTCTTAG
1 TATAACAACTCGCACAAATGCCTTCGGGTCTTAG
73835180 CCCGGATATA
Statistics
Matches: 60, Mismatches: 1, Indels: 13
0.81 0.01 0.18
Matches are distributed among these distances:
31 10 0.17
35 22 0.37
36 21 0.35
40 7 0.12
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.25
Consensus pattern (35 bp):
TATAACAACTCGCACAAATGCCTTCGGGTCTTAGA
Found at i:73835170 original size:71 final size:74
Alignment explanation
Indices: 73835026--73835219 Score: 234
Period size: 71 Copynumber: 2.6 Consensus size: 74
73835016 TCTTCGGAAT
* * * * *
73835026 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAATCAC-AGCACAAATGCCTTCGGGACTT-A----GATATAACAACTCGCAC
73835090 AAATGCCTTCGGGTC
60 AAATGCCTTCGGGTC
*
73835105 TTAGCCCGGATATAA-CA-A-CACAAATGCCTTCGGGTCTTAGATATAACAACTCGCACAAATGC
1 TTAGCCCGGATATAATCACAGCACAAATGCCTTCGGGACTTAGATATAACAACTCGCACAAATGC
73835167 CTTCGGGTC
66 CTTCGGGTC
*
73835176 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAG
1 TTAGCCCGGATATAATCAC-AGCACAAATGCCTTCGGGACTTAG
73835220 CCTGGGTATC
Statistics
Matches: 105, Mismatches: 5, Indels: 14
0.85 0.04 0.11
Matches are distributed among these distances:
71 45 0.43
72 2 0.02
74 1 0.01
75 21 0.20
76 19 0.18
77 1 0.01
79 6 0.06
80 10 0.10
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (74 bp):
TTAGCCCGGATATAATCACAGCACAAATGCCTTCGGGACTTAGATATAACAACTCGCACAAATGC
CTTCGGGTC
Found at i:73835219 original size:40 final size:39
Alignment explanation
Indices: 73835026--73835221 Score: 212
Period size: 40 Copynumber: 5.2 Consensus size: 39
73835016 TCTTCGGAAT
* *
73835026 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTC
* * * *
73835065 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTC
73835105 TTAGCCCGGATATAACA--A-CACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTC
*
73835141 TTA-----GATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTC
* *
73835176 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTC
73835216 TTAGCC
1 TTAGCC
73835222 TGGGTATCAT
Statistics
Matches: 131, Mismatches: 14, Indels: 23
0.78 0.08 0.14
Matches are distributed among these distances:
31 8 0.06
32 1 0.01
35 21 0.16
36 21 0.16
39 5 0.04
40 74 0.56
41 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTC
Found at i:73840423 original size:40 final size:40
Alignment explanation
Indices: 73840378--73840545 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
73840368 CGGAATATAA
73840378 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
73840418 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
73840458 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
73840498 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
73840538 CCGGATAT
1 CCGGATAT
73840546 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73847206 original size:41 final size:41
Alignment explanation
Indices: 73847161--73847278 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
73847151 TGAAAGATAA
73847161 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
73847202 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
73847232 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
73847273 ATGTAG
1 ATGTAG
73847279 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:73847217 original size:71 final size:71
Alignment explanation
Indices: 73847129--73847292 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
73847119 GAGATGTATC
73847129 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73847194 AGGACA
66 AGGACA
73847200 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73847265 AGGACA
66 AGGACA
73847271 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
73847293 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:73854808 original size:70 final size:71
Alignment explanation
Indices: 73854657--73854819 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
73854647 GAGATGTATC
73854657 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73854722 AGGACA
66 AGGACA
73854728 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
73854792 CGGACA
66 AGGACA
73854798 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
73854820 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:73856755 original size:40 final size:40
Alignment explanation
Indices: 73856690--73856897 Score: 294
Period size: 40 Copynumber: 5.2 Consensus size: 40
73856680 TCTTCGGAAT
* ** *
73856690 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * * *
73856729 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTTGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
73856769 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
73856809 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
73856849 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
73856889 TTAGCCCGG
1 TTAGCCCGG
73856898 GTATCATTCA
Statistics
Matches: 152, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 3 0.02
40 148 0.97
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:73860366 original size:52 final size:51
Alignment explanation
Indices: 73860309--73860440 Score: 185
Period size: 50 Copynumber: 2.6 Consensus size: 51
73860299 ATGAACAAAT
*
73860309 GAGTTACTTAATGCATGACTTAATTTAATGATGCAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGACTTAATTTAATGATGCAAAC-TTAACTAACATGG
* * * *
73860361 GAGTTACATAATGCATGTCATAATTT-ATGATGCAAACTTAATTTACATGG
1 GAGTTACATAATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGG
* *
73860411 GAGTTACATAATGCATGACTTTATTAAATG
1 GAGTTACATAATGCATGACTTAATTTAATG
73860441 CAAAACACAT
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
50 33 0.47
51 14 0.20
52 23 0.33
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (51 bp):
GAGTTACATAATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGG
Found at i:73875071 original size:29 final size:28
Alignment explanation
Indices: 73875004--73875076 Score: 85
Period size: 29 Copynumber: 2.6 Consensus size: 28
73874994 GTATAATAAG
73875004 CCCGCACACTTAGTGCTTAATAGTCGAA
1 CCCGCACACTTAGTGCTTAATAGTCGAA
* * * *
73875032 CTCGTACACTTAGTGCTATACA-ATTTGAA
1 CCCGCACACTTAGTGCT-TA-ATAGTCGAA
73875061 CCCGCACACTTAGTGC
1 CCCGCACACTTAGTGC
73875077 CAATTCATGA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
28 15 0.41
29 21 0.57
30 1 0.03
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (28 bp):
CCCGCACACTTAGTGCTTAATAGTCGAA
Found at i:73881375 original size:41 final size:40
Alignment explanation
Indices: 73881248--73881392 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
73881238 CTCGCCCAAG
* * * *
73881248 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAACATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* *
73881288 GCCTTCGGGACTTAGCCCGAATATAGTTACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
73881328 GCCTTC-GGATCTTAGTCCGGATGTAGTCACTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAAT
73881369 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
73881393 CATTCGAGTA
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.03
40 56 0.63
41 27 0.30
42 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:73903252 original size:49 final size:49
Alignment explanation
Indices: 73903179--73903309 Score: 167
Period size: 49 Copynumber: 2.7 Consensus size: 49
73903169 GACAAGTTGT
*
73903179 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATC-A-CCGAAGA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTATCA-CAATCC-AAGA
* * * * *
73903228 TGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATCCATGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTATCACA-ATCCAAGA
73903278 CGATGCCATGTCCCAAACATGGTCTTACACTG
1 CGATGCCATGTCCCAAACATGGTCTTACACTG
73903310 ACACATTTTG
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
48 1 0.01
49 35 0.49
50 33 0.46
51 2 0.03
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (49 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTATCACAATCCAAGA
Found at i:73903381 original size:46 final size:45
Alignment explanation
Indices: 73903322--73903492 Score: 173
Period size: 46 Copynumber: 3.7 Consensus size: 45
73903312 ACATTTTGTA
*
73903322 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTTACGTCCCGAG
1 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTT-CGTCACGAG
* * * * * *
73903368 GCTGATGCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAAT
1 GCCGATGCATGTCCTAGACATGTCTTACACTGGC-TTCGTCACGAG
* * * *
73903414 GCCGATGCCATGTACC-AGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATG-CATGT-CCTAGACAT-GTCTTACACTGGCT-TCGTCACGAG
*
73903462 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCTAGACATGTCTTACACT
73903493 AGCCCACAAT
Statistics
Matches: 103, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
46 56 0.54
47 23 0.22
48 24 0.23
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCTAGACATGTCTTACACTGGCTTCGTCACGAG
Found at i:73903441 original size:94 final size:92
Alignment explanation
Indices: 73903322--73903495 Score: 235
Period size: 94 Copynumber: 1.9 Consensus size: 92
73903312 ACATTTTGTA
* ** * *
73903322 GCCGATGCATGTCCTAGACATGTCTTACACTGGCT-TACGTCCCGAGGCTGATGCATGTCCTAGA
1 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTCT-CATAACGAGGCCGATGCATGTCCCAGA
73903386 CATGTCTTACACTAGCACTCGTCTCAAT
65 CATGTCTTACACTAGCACTCGTCTCAAT
* *
73903414 GCCGATGCCATGTACC-AGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCA
1 GCCGATG-CATGT-CCTAGACAT-GTCTTACACTGGCTCTCATAACGAGGCCGATGCATGTCCCA
73903478 GACATGTCTTACACTAGC
63 GACATGTCTTACACTAGC
73903496 CCACAATAAC
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
92 7 0.10
93 11 0.15
94 52 0.73
95 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.27
Consensus pattern (92 bp):
GCCGATGCATGTCCTAGACATGTCTTACACTGGCTCTCATAACGAGGCCGATGCATGTCCCAGAC
ATGTCTTACACTAGCACTCGTCTCAAT
Found at i:73903481 original size:140 final size:142
Alignment explanation
Indices: 73903179--73903492 Score: 386
Period size: 140 Copynumber: 2.2 Consensus size: 142
73903169 GACAAGTTGT
73903179 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCACCGAAGATGATGCCATGTCCCAA
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATCACCGAAGATGATGCCATGTCCCAA
* * *
73903244 ACATGGTCTTACACTAGCTCTCACATATCCATGCCGATGCCATGTCCCAAACATGGTCTTACACT
64 ACATGGTCTTACACTAGCACT-ACATATCAATGCCGATGCCATGTACCAAACATGGTCTTACACT
**
73903309 GACACATTTTGTAGC
128 GACACATAATGTAGC
* * * * * *
73903324 CGATGCATGTCCTAGACATGTCTTACACTGGCT-TACGTC-CCGAGGCTGATG-CATGTCCTAGA
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTAT-CATCACCGAAGATGATGCCATGTCCCAAA
* * *
73903386 CAT-GTCTTACACTAGCACT-CGTCTCAATGCCGATGCCATGTACCAGACATGGTCTTACACTGG
65 CATGGTCTTACACTAGCACTACATATCAATGCCGATGCCATGTACCAAACATGGTCTTACACT-G
* * *
73903449 CTCTCATAATGTGGC
129 -ACACATAATGTAGC
73903464 CGATGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
73903493 AGCCCACAAT
Statistics
Matches: 148, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
138 37 0.25
139 1 0.01
140 52 0.35
141 12 0.08
142 11 0.07
143 17 0.11
144 13 0.09
145 5 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (142 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCACCGAAGATGATGCCATGTCCCAAAC
ATGGTCTTACACTAGCACTACATATCAATGCCGATGCCATGTACCAAACATGGTCTTACACTGAC
ACATAATGTAGC
Found at i:73905392 original size:46 final size:46
Alignment explanation
Indices: 73905309--73905425 Score: 130
Period size: 46 Copynumber: 2.5 Consensus size: 46
73905299 AAGTAAAAGC
*
73905309 CATGTCCCAGACATGGTCTTACATTGACTACCATCTCGTA-GCCAACG
1 CATGTCCCAGACAT-GTCTTACACTGACTACCATCTCG-AGGCCAACG
* * * * *
73905356 CATGTCCCAGACATGTCTTACACTGGCTTA-CGTCTCGAGGTCGATG
1 CATGTCCCAGACATGTCTTACACTGAC-TACCATCTCGAGGCCAACG
*
73905402 CATGTCCCAGACACGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
73905426 AGCACTCATC
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
45 1 0.02
46 44 0.72
47 16 0.26
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGACTACCATCTCGAGGCCAACG
Found at i:73905445 original size:46 final size:45
Alignment explanation
Indices: 73905355--73905481 Score: 128
Period size: 46 Copynumber: 2.7 Consensus size: 45
73905345 CGTAGCCAAC
* * * * * *
73905355 GCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGTCGAT
1 GCATGTCCCAGACAAGTCTTACACTAGCCT-CATCCCAAGGTCGAT
* *
73905401 GCATGTCCCAGACACGTCTTACACTAGCACTCATCCCAATGTCGAT
1 GCATGTCCCAGACAAGTCTTACACTAGC-CTCATCCCAAGGTCGAT
*
73905447 GCCATGTCCCAAACATAGTCTTACACTAGCTCTCA
1 G-CATGTCCCAGACA-AGTCTTACACTAGC-CTCA
73905482 CAAATGACCC
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 38 0.56
47 13 0.19
48 17 0.25
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.26
Consensus pattern (45 bp):
GCATGTCCCAGACAAGTCTTACACTAGCCTCATCCCAAGGTCGAT
Found at i:73914910 original size:27 final size:27
Alignment explanation
Indices: 73914880--73914959 Score: 68
Period size: 27 Copynumber: 3.2 Consensus size: 27
73914870 ACTCAACAAG
73914880 CTCGGATGCCTAGTTACATCTCACGAA
1 CTCGGATGCCTAGTTACATCTCACGAA
* *
73914907 CTCGGA---CTCA---AC-TC-AACGAG
1 CTCGGATGCCT-AGTTACATCTCACGAA
*
73914927 TTCGGATGCCTAGTTACATCTCACGAA
1 CTCGGATGCCTAGTTACATCTCACGAA
73914954 CTCGGA
1 CTCGGA
73914960 CTCAACTCAA
Statistics
Matches: 38, Mismatches: 6, Indels: 18
0.61 0.10 0.29
Matches are distributed among these distances:
20 9 0.24
21 2 0.05
22 3 0.08
23 2 0.05
24 2 0.05
25 3 0.08
26 2 0.05
27 15 0.39
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (27 bp):
CTCGGATGCCTAGTTACATCTCACGAA
Found at i:73914975 original size:47 final size:47
Alignment explanation
Indices: 73914857--73915026 Score: 204
Period size: 47 Copynumber: 3.6 Consensus size: 47
73914847 ATCCATAAGT
* * *
73914857 GAACTCAGACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
73914904 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* * * * * *
73914951 GAACTCGGACTCAACTCAATGAGTTCAGA--CGT--TTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-TCA-C
73914997 GAACTCGGACTCAACTCAACGAGTTCGGAT
1 GAACTCGGACTCAACTCAACGAGTTCGGAT
73915027 ACCCAAATAT
Statistics
Matches: 108, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 4 0.04
46 27 0.25
47 71 0.66
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:73916903 original size:47 final size:45
Alignment explanation
Indices: 73916753--73917020 Score: 235
Period size: 46 Copynumber: 5.7 Consensus size: 45
73916743 GGTATGGTGT
*
73916753 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTTGTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGACTATCATCTCG-AGC
* * * *
73916801 CGATGCATGTCCTAGACATGTCTTACACTGGA-TCAT-ATATCAAGT
1 CGATGCATGTCCCAGACATGTCTTACACT-GACT-ATCATCTCGAGC
* *
73916846 TGATGCCATGTCCCA-AGCATGGTCTTACACTGACTATCATTTCGTAGC
1 CGATG-CATGTCCCAGA-CAT-GTCTTACACTGACTATCATCTCG-AGC
* *
73916894 CAATGCATGTCCCAGACATGTCTTACACT-AGCT-TACGTCTCGAGAC
1 CGATGCATGTCCCAGACATGTCTTACACTGA-CTAT-CATCTCGAG-C
* *
73916940 CGATGCATGTCCCAAACATGTCTTACACT-AGC-ACTCCTCTCGATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGA-CTA-TCATCTCGA-GC
73916986 CGATGCAATGTCCCAGACATGGTCTTACACTGACT
1 CGATGC-ATGTCCCAGACAT-GTCTTACACTGACT
73917021 CTCGTAATGT
Statistics
Matches: 183, Mismatches: 18, Indels: 37
0.77 0.08 0.16
Matches are distributed among these distances:
45 11 0.06
46 91 0.50
47 58 0.32
48 22 0.12
49 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGACTATCATCTCGAGC
Found at i:73916913 original size:93 final size:93
Alignment explanation
Indices: 73916754--73916922 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
73916744 GTATGGTGTC
* *
73916754 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTTGTAGCCGATGCATGTCCTAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTTGTAGCCAATGCATGTCCCAGACA
73916819 TGTCTTACACTGGATCATATATCAAGTT
66 TGTCTTACACTGGATCATATATCAAGTT
73916847 GATGCCATGTCCCA-AGCATGGTCTTACACTGACTATCAT-TTCGTAGCCAATGCATGTCCCAGA
1 GATGCCATGTCCCAGA-CATGGTCTTACACTGACTATCATCTT-GTAGCCAATGCATGTCCCAGA
73916910 CATGTCTTACACT
64 CATGTCTTACACT
73916923 AGCTTACGTC
Statistics
Matches: 72, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
92 3 0.04
93 69 0.96
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (93 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTTGTAGCCAATGCATGTCCCAGACA
TGTCTTACACTGGATCATATATCAAGTT
Found at i:73916949 original size:93 final size:93
Alignment explanation
Indices: 73916753--73917016 Score: 281
Period size: 93 Copynumber: 2.8 Consensus size: 93
73916743 GGTATGGTGT
*
73916753 CGATGCCATGTCCC-AGACATGGTCTTACACTGACTATCATCTT-GTAGCCGATGCATGTCCTAG
1 CGATGCCATGTCCCAAG-CATGGTCTTACACTGACTATCAT-TTCGTAGCCGATGCATGTCCCAG
* * *
73916816 ACATGTCTTACACTGGATCATATATCAAGT
64 ACATGTCTTACACTAGATCACATATCAAGC
* *
73916846 TGATGCCATGTCCCAAGCATGGTCTTACACTGACTATCATTTCGTAGCCAATGCATGTCCCAGAC
1 CGATGCCATGTCCCAAGCATGGTCTTACACTGACTATCATTTCGTAGCCGATGCATGTCCCAGAC
* * * * *
73916911 ATGTCTTACACTAGCTTACGTCTCGAGAC
66 ATGTCTTACACTAGATCACATATCAAG-C
* * *
73916940 CGATG-CATGTCCCAAACAT-GTCTTACACT-AGC-ACTCCTCTCG-ATGCCGATGCAATGTCCC
1 CGATGCCATGTCCCAAGCATGGTCTTACACTGA-CTA-TCATTTCGTA-GCCGATGC-ATGTCCC
73917000 AGACATGGTCTTACACT
62 AGACAT-GTCTTACACT
73917017 GACTCTCGTA
Statistics
Matches: 147, Mismatches: 16, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
91 3 0.02
92 26 0.18
93 102 0.69
94 16 0.11
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (93 bp):
CGATGCCATGTCCCAAGCATGGTCTTACACTGACTATCATTTCGTAGCCGATGCATGTCCCAGAC
ATGTCTTACACTAGATCACATATCAAGC
Found at i:73922598 original size:67 final size:67
Alignment explanation
Indices: 73922504--73922680 Score: 275
Period size: 67 Copynumber: 2.7 Consensus size: 67
73922494 CCACCCATAT
* * *
73922504 AACCTAGCCAC-TTTATCTCGTAGCTCTCTTGTTTACATGGTGTCCTTCACCCAGAACCACACAT
1 AACCTAGCTACATTTATCTCATAGCTCTCTTGTTTACATGGTGTCATTCACCCAGAACCACACAT
73922568 GC
66 GC
***
73922570 AACCTAGCTACATTTATCTCATAGCTCTCTTGTTTACATGGTGTCATTCACTTGGAACCACACAT
1 AACCTAGCTACATTTATCTCATAGCTCTCTTGTTTACATGGTGTCATTCACCCAGAACCACACAT
73922635 GC
66 GC
* *
73922637 AACCTAGCTACATTTATCTCTTAGCTCTCTTGTCTACATGGTGT
1 AACCTAGCTACATTTATCTCATAGCTCTCTTGTTTACATGGTGT
73922681 ACACATAGTA
Statistics
Matches: 102, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
66 10 0.10
67 92 0.90
ACGTcount: A:0.23, C:0.29, G:0.14, T:0.34
Consensus pattern (67 bp):
AACCTAGCTACATTTATCTCATAGCTCTCTTGTTTACATGGTGTCATTCACCCAGAACCACACAT
GC
Found at i:73922773 original size:68 final size:68
Alignment explanation
Indices: 73922653--73922779 Score: 150
Period size: 68 Copynumber: 1.9 Consensus size: 68
73922643 GCTACATTTA
* * * *
73922653 TCTCTTAGCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCGTA
1 TCTCGTAGCTCTCTTGTCTACATGGTATACACACAGTATCACACATGCGACCTAGCTACCTCGTA
73922718 ATG
66 ATG
* * * *
73922721 TCTCGTAGCTCTCTTGTAC-ACATGGTATACATC-CCGTATTACACATGTGACCTATCTAC
1 TCTCGTAGCTCTCTTGT-CTACATGGTATACA-CACAGTATCACACATGCGACCTAGCTAC
73922780 ATACCATATG
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
68 47 0.96
69 2 0.04
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTATACACACAGTATCACACATGCGACCTAGCTACCTCGTA
ATG
Done.