Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 259 of 444
Found at i:73923598 original size:20 final size:20
Alignment explanation
Indices: 73923561--73923598 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
73923551 TGTGGATTCC
**
73923561 ACACGCCCATGTGGCTTGGG
1 ACACGCCCATGTCCCTTGGG
73923581 ACACGCCCATGTCCCTTG
1 ACACGCCCATGTCCCTTG
73923599 TCCGTGGAGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.37, G:0.26, T:0.21
Consensus pattern (20 bp):
ACACGCCCATGTCCCTTGGG
Found at i:73929947 original size:6 final size:6
Alignment explanation
Indices: 73929926--73929981 Score: 85
Period size: 6 Copynumber: 9.3 Consensus size: 6
73929916 GGTATAGAAT
* * *
73929926 TATACA TATCTA TATATC TATATA TATATA TATATA TATATA TATATA
1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
73929974 TATATA TA
1 TATATA TA
73929982 ATGTTACTGT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.48
Consensus pattern (6 bp):
TATATA
Found at i:73929953 original size:4 final size:4
Alignment explanation
Indices: 73929926--73929981 Score: 85
Period size: 4 Copynumber: 14.0 Consensus size: 4
73929916 GGTATAGAAT
* * *
73929926 TATA CATA TCTA TATA TCTA TATA TATA TATA TATA TATA TATA TATA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
73929974 TATA TATA
1 TATA TATA
73929982 ATGTTACTGT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 46 1.00
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.48
Consensus pattern (4 bp):
TATA
Found at i:73931197 original size:13 final size:13
Alignment explanation
Indices: 73931179--73931204 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73931169 GCTCGTCAGG
73931179 GACACGCCCGTGT
1 GACACGCCCGTGT
73931192 GACACGCCCGTGT
1 GACACGCCCGTGT
73931205 ACGATTACTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:73934280 original size:26 final size:26
Alignment explanation
Indices: 73934249--73934327 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
73934239 ACACAGTTCT
* *
73934249 CACATTAAGATTGCATATCGAGCTCG
1 CACATTAGGCTTGCATATCGAGCTCG
* * *
73934275 CTCATTAGGCTTGCATATCAAGCTTG
1 CACATTAGGCTTGCATATCGAGCTCG
*
73934301 CACATTAGGCTTGCATATTGAGCTCG
1 CACATTAGGCTTGCATATCGAGCTCG
73934327 C
1 C
73934328 GTGATGCTAA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
CACATTAGGCTTGCATATCGAGCTCG
Found at i:73943475 original size:43 final size:42
Alignment explanation
Indices: 73943321--73943476 Score: 154
Period size: 43 Copynumber: 3.7 Consensus size: 42
73943311 TGTGTTATTG
** *
73943321 TGTAAGACCATGTCTTAGACATTGGCATCGACTTCTGATTTACA
1 TGTAAGACCATGTCTGGGACATTGGCATCGA-TTTTGA-TTACA
* * * **
73943365 TATAAGACAATGTTTGGGACATCAGCATCG-TATTTGATT-CA
1 TGTAAGACCATGTCTGGGACATTGGCATCGAT-TTTGATTACA
* *
73943406 TGTAAGACCATGTCTAGGACAATGGCATCGATGTTTGATTACA
1 TGTAAGACCATGTCTGGGACATTGGCATCGAT-TTTGATTACA
* *
73943449 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACATTGGCAT
73943477 TGTATTTGCT
Statistics
Matches: 89, Mismatches: 20, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
41 25 0.28
42 11 0.12
43 30 0.34
44 23 0.26
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGATTTTGATTACA
Found at i:73957638 original size:40 final size:40
Alignment explanation
Indices: 73957511--73957640 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
73957501 ATGCTGGAAA
* * * *
73957511 TTATATCCGGGTTAAGACCCAAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
73957551 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
73957591 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
73957631 TTATATCCGG
1 TTATATCCGG
73957641 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:73962825 original size:40 final size:40
Alignment explanation
Indices: 73962741--73962925 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
73962731 TCGAATGATG
* *
73962741 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
73962780 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
73962821 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
73962860 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
73962899 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
73962926 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 36 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:73962877 original size:79 final size:81
Alignment explanation
Indices: 73962741--73962923 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
73962731 TCGAATGATG
* *
73962741 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
73962805 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
73962820 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
73962882 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
73962900 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
73962924 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:73962947 original size:79 final size:79
Alignment explanation
Indices: 73962742--73962948 Score: 237
Period size: 79 Copynumber: 2.6 Consensus size: 79
73962732 CGAATGATGT
* *
73962742 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAGATCCGAAGGCATT
*
73962805 TGTGCGAGTTACTAATT
63 TGTGCGAGTTACTAATA
* *
73962822 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGAT-CCGAAGGCATT
73962884 TGTGCGAGTTACT-ATAA
63 TGTGCGAGTTACTAAT-A
* **
73962901 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAA
73962949 ATTCCAAAGG
Statistics
Matches: 109, Mismatches: 10, Indels: 17
0.80 0.07 0.12
Matches are distributed among these distances:
78 3 0.03
79 63 0.58
80 43 0.39
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGATCCGAAGGCATTTGT
GCGAGTTACTAATA
Found at i:73971223 original size:25 final size:25
Alignment explanation
Indices: 73971195--73971243 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
73971185 CTATTTTTGA
* *
73971195 TAGTATATCCTGAAACTTCTATAGG
1 TAGTATATACTGAAACTACTATAGG
*
73971220 TAGTATATACTGAGACTACTATAG
1 TAGTATATACTGAAACTACTATAG
73971244 ATAGACTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (25 bp):
TAGTATATACTGAAACTACTATAGG
Found at i:73983147 original size:13 final size:13
Alignment explanation
Indices: 73983129--73983153 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73983119 GTAAGTGATT
73983129 TTGATGATTTTTC
1 TTGATGATTTTTC
73983142 TTGATGATTTTT
1 TTGATGATTTTT
73983154 GTACTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:73983924 original size:46 final size:48
Alignment explanation
Indices: 73983857--73983977 Score: 176
Period size: 48 Copynumber: 2.6 Consensus size: 48
73983847 TGATATATGT
*
73983857 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-C-CACAACATGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCACAACAT-ACAA
* *
73983903 GCTAGTGTAAGACATGTCTGGGACATGCATTAGCCTCACGACATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCACAACATACAA
*
73983951 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
73983978 GCGTCAGCTT
Statistics
Matches: 68, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
46 32 0.47
47 2 0.03
48 34 0.50
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.22
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCACAACATACAA
Found at i:73993186 original size:47 final size:47
Alignment explanation
Indices: 73993117--73993319 Score: 307
Period size: 47 Copynumber: 4.3 Consensus size: 47
73993107 CCCTTCGGGA
* *
73993117 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
73993164 CTTATCACATATATACACTTTCACATCCATCACATTGGCCGTTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
73993211 CTTACCACACATATACACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
73993258 CTTATCACATATATACACTTTCACATTCATCACATTGGCCGTTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
73993305 CTTATCACACATATA
1 CTTATCACACATATA
73993320 TGTATATCAT
Statistics
Matches: 138, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 138 1.00
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:73993283 original size:94 final size:94
Alignment explanation
Indices: 73993117--73993319 Score: 370
Period size: 94 Copynumber: 2.2 Consensus size: 94
73993107 CCCTTCGGGA
*
73993117 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
73993182 TTTCACATCCATCACATTGGCCGTTCGGC
66 TTTCACATCCATCACATTGGCCGTTCGGC
* *
73993211 CTTACCACACATATACACTTTCACATTCATCACATGGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
73993276 TTTCACATTCATCACATTGGCCGTTCGGC
66 TTTCACATCCATCACATTGGCCGTTCGGC
73993305 CTTATCACACATATA
1 CTTATCACACATATA
73993320 TGTATATCAT
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 104 1.00
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (94 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATCCATCACATTGGCCGTTCGGC
Found at i:73996479 original size:40 final size:40
Alignment explanation
Indices: 73996434--73996876 Score: 679
Period size: 40 Copynumber: 11.1 Consensus size: 40
73996424 CGAATACACG
* * *
73996434 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * ** ** *
73996474 ACACCAGCACAAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
73996514 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGACACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
73996554 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* *
73996594 TCACTAGCATGAATGGTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
73996634 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
*
73996674 TCACTAGCCTGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
*
73996714 TCACTAGCGTGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* *
73996754 TCACTAGCGTGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* *
73996794 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCAGATCTA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* *
73996834 TCACTAGCATGAATTCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
73996874 TCA
1 TCA
73996877 TCGAGACCTT
Statistics
Matches: 369, Mismatches: 34, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 369 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:73996971 original size:38 final size:38
Alignment explanation
Indices: 73996929--73997003 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 38
73996919 GAATTTTAAT
* *
73996929 CCGGACATACTCTCTGT-ACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCT-TCACATAGCCAGCGGGTCTTTAC
* *
73996967 CCGGACATAATCTCTTCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTA
73997004 AACTCGAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 1 0.03
38 31 0.97
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTAC
Found at i:73999515 original size:47 final size:47
Alignment explanation
Indices: 73999446--73999643 Score: 288
Period size: 47 Copynumber: 4.2 Consensus size: 47
73999436 CCCTTCGGGA
* * *
73999446 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
73999493 CTTATCACATATATACACTTTCACATCCATCACATTGGCCGTTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
73999540 CTTACCATACATATACACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
73999587 CTTATCACATATATACACTTTCACATTCATCACATTGGCCGTTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
73999634 CTTATCACAT
1 CTTATCACAT
73999644 TGGCCGTTCG
Statistics
Matches: 132, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:73999618 original size:94 final size:94
Alignment explanation
Indices: 73999454--73999637 Score: 341
Period size: 94 Copynumber: 2.0 Consensus size: 94
73999444 GACTTATCAC
*
73999454 ACATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 ACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
73999519 CCATCACATTGGCCGTTCGGCCTTACCAT
66 CCATCACATTGGCCGTTCGGCCTTACCAT
*
73999548 ACATATACACTTTCACATTCATCACATGGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 ACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
*
73999613 TCATCACATTGGCCGTTCGGCCTTA
66 CCATCACATTGGCCGTTCGGCCTTA
73999638 TCACATTGGC
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 87 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (94 bp):
ACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
CCATCACATTGGCCGTTCGGCCTTACCAT
Found at i:73999643 original size:22 final size:22
Alignment explanation
Indices: 73999615--73999663 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
73999605 TTTCACATTC
73999615 ATCACATTGGCCGTTCGGCCTT
1 ATCACATTGGCCGTTCGGCCTT
73999637 ATCACATTGGCCGTTCGGCCTT
1 ATCACATTGGCCGTTCGGCCTT
73999659 ATCAC
1 ATCAC
73999664 TACAAGCAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.16, C:0.33, G:0.20, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCGTTCGGCCTT
Found at i:74008857 original size:76 final size:76
Alignment explanation
Indices: 74008761--74008913 Score: 306
Period size: 76 Copynumber: 2.0 Consensus size: 76
74008751 TTCTTTTTAA
74008761 TGCACCAACCACCTTCAAAGATAAAGAAATCACATATTTAGCAAAAAAATAAACCAAGATAACAA
1 TGCACCAACCACCTTCAAAGATAAAGAAATCACATATTTAGCAAAAAAATAAACCAAGATAACAA
74008826 ATTTTCCCTAG
66 ATTTTCCCTAG
74008837 TGCACCAACCACCTTCAAAGATAAAGAAATCACATATTTAGCAAAAAAATAAACCAAGATAACAA
1 TGCACCAACCACCTTCAAAGATAAAGAAATCACATATTTAGCAAAAAAATAAACCAAGATAACAA
74008902 ATTTTCCCTAG
66 ATTTTCCCTAG
74008913 T
1 T
74008914 ATTACTCAAC
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 77 1.00
ACGTcount: A:0.48, C:0.22, G:0.08, T:0.22
Consensus pattern (76 bp):
TGCACCAACCACCTTCAAAGATAAAGAAATCACATATTTAGCAAAAAAATAAACCAAGATAACAA
ATTTTCCCTAG
Found at i:74022799 original size:69 final size:68
Alignment explanation
Indices: 74022667--74022853 Score: 194
Period size: 69 Copynumber: 2.7 Consensus size: 68
74022657 ACACCTCAAA
** ** *
74022667 GGATGTATAAAATGTAAGACCATAGCTCGGTTATGGCAACTAATAGAGTTTTCCAAGATAGTAAA
1 GGAT-TAT-AAATGTAAGACCATAGCTCGACTATGGCAACTAATAGAGTTTGACAAGACAGTAAA
*
74022732 CATGG
64 CATAG
* * * ***
74022737 GGATTATAAGATGTAAGACTATAGCTCAACTATGACAACTAATAGAGTTTGATGGGACAGTAAAC
1 GGATTATAA-ATGTAAGACCATAGCTCGACTATGGCAACTAATAGAGTTTGACAAGACAGTAAAC
*
74022802 ATAT
65 ATAG
* * *
74022806 GGATTATAAAGTGTAAGTCCATAGCTCGACTATGGCAACCATTAGAGT
1 GGATTATAAA-TGTAAGACCATAGCTCGACTATGGCAACTAATAGAGT
74022854 CCACCGAGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
68 3 0.03
69 89 0.93
70 4 0.04
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.27
Consensus pattern (68 bp):
GGATTATAAATGTAAGACCATAGCTCGACTATGGCAACTAATAGAGTTTGACAAGACAGTAAACA
TAG
Found at i:74023636 original size:15 final size:15
Alignment explanation
Indices: 74023616--74023648 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
74023606 GGGAGTTAGA
74023616 AAAATTTTAACTT-TT
1 AAAATTTT-ACTTCTT
74023631 AAAATTTTACTTCTT
1 AAAATTTTACTTCTT
74023646 AAA
1 AAA
74023649 GTTTACGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (15 bp):
AAAATTTTACTTCTT
Found at i:74027003 original size:26 final size:27
Alignment explanation
Indices: 74026974--74027045 Score: 98
Period size: 26 Copynumber: 2.8 Consensus size: 27
74026964 ACGGGTAATA
74026974 TTTTTATAATTTTTGA-AAATTCT-GTT
1 TTTTTATAATTTTT-ATAAATTCTAGTT
74027000 TTTTTATAATTTTTATAAATTCTAG-T
1 TTTTTATAATTTTTATAAATTCTAGTT
*
74027026 TTTTT-TCATTTTTATAAATT
1 TTTTTATAATTTTTATAAATT
74027046 TACAGATTAT
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
25 15 0.35
26 27 0.63
27 1 0.02
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.64
Consensus pattern (27 bp):
TTTTTATAATTTTTATAAATTCTAGTT
Found at i:74032805 original size:342 final size:342
Alignment explanation
Indices: 74032176--74032861 Score: 1025
Period size: 342 Copynumber: 2.0 Consensus size: 342
74032166 GCACTTTCAT
* * *
74032176 CACTATTTCTTGAGTTTAATGCATGTTGTGTTTGCCTTTTAGGCAGCATGTTTTTTGCATGAGAA
1 CACTATTTCTTGAGTTCAATACATGTTGTGTTTGCCTTTTAGGCAGCATGGTTTTTGCATGAGAA
* * ** *
74032241 GGTTCACTTATGCAGTTGAATTTTGAGACAATCATAGGAGCTGTTTTAGTTGCATCATGATTTTC
66 GGTTCACATATGCAGTTGAATTTTGAGACAATCACACCAGCTGTTTTAGTTGCATCATGACTTTC
* * * *
74032306 TGGACCATCACATACAGTCCTGTTCTTTTATCCACTAGCATTATCTCTTTTCACAACTATATTTT
131 TGGACCATCACATACAGTCCTATTCTTTCATCCACTAGCATTATCACTTTTCACAACAATATTTT
* *
74032371 CATTTTGTTGACTCACTTGGCATCGTACATTATTAAATCTGCTAAAATGATGTCCAAATGTCTGA
196 CATTTTGTTGACTCACTTGACATCGTACATTATTAAATCTGCTAAAATGATGTCCAAATGCCTGA
*
74032436 TCTGCATTATGTGAGCAGTAATGTGTGCTTCTCCAGCCACCTTTTCCTTCAAAGCATGCATCTCT
261 TCTGCATTATCTGAGCAGTAATGTGTGCTTCTCCAGCCACCTTTTCCTTCAAAGCATGCATCTCT
74032501 ATTTGAATCACCAAAAC
326 ATTTGAATCACCAAAAC
* *
74032518 CACTATTTCTTGAGTTCAATACATGTTTTGTTTGCCTTTTAGGCAGTATGGTTTTTGCACT-AGA
1 CACTATTTCTTGAGTTCAATACATGTTGTGTTTGCCTTTTAGGCAGCATGGTTTTTGCA-TGAGA
* * *
74032582 AGGTTCACATCTTCGGTTGAATTTTGAGACAATCACACCAGCT-TTTTCAGTTGCATCATGACTT
65 AGGTTCACATATGCAGTTGAATTTTGAGACAATCACACCAGCTGTTTT-AGTTGCATCATGACTT
*** * *
74032646 TCTGGACCATCACATGTGGTCCTATTGTTTCCTCCACTAGCATTATCACTTTTCACAACAATATT
129 TCTGGACCATCACATACAGTCCTATTCTTTCATCCACTAGCATTATCACTTTTCACAACAATATT
* * * *
74032711 TTCATTTTGTTGACTCACTTGACATTGTATATTATTAAATCTGCTGAAATGATGTCCAACTGCCT
194 TTCATTTTGTTGACTCACTTGACATCGTACATTATTAAATCTGCTAAAATGATGTCCAAATGCCT
* ** * *
74032776 GATCTGCATTGTCTGAGTGGTAGTGTGTGCTTCTCCAGCCACCTTTTTCTTCAAAGCATGCATCT
259 GATCTGCATTATCTGAGCAGTAATGTGTGCTTCTCCAGCCACCTTTTCCTTCAAAGCATGCATCT
*
74032841 TTATTTGAATCACCAAAAC
324 CTATTTGAATCACCAAAAC
74032860 CA
1 CA
74032862 TTAGCTTCTA
Statistics
Matches: 307, Mismatches: 35, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
341 4 0.01
342 302 0.98
343 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (342 bp):
CACTATTTCTTGAGTTCAATACATGTTGTGTTTGCCTTTTAGGCAGCATGGTTTTTGCATGAGAA
GGTTCACATATGCAGTTGAATTTTGAGACAATCACACCAGCTGTTTTAGTTGCATCATGACTTTC
TGGACCATCACATACAGTCCTATTCTTTCATCCACTAGCATTATCACTTTTCACAACAATATTTT
CATTTTGTTGACTCACTTGACATCGTACATTATTAAATCTGCTAAAATGATGTCCAAATGCCTGA
TCTGCATTATCTGAGCAGTAATGTGTGCTTCTCCAGCCACCTTTTCCTTCAAAGCATGCATCTCT
ATTTGAATCACCAAAAC
Found at i:74039372 original size:17 final size:16
Alignment explanation
Indices: 74039348--74039379 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
74039338 CCCTAAGAAA
74039348 ATATTTTATTTTGTTT
1 ATATTTTATTTTGTTT
74039364 ATATGTTTATTTTGTT
1 ATAT-TTTATTTTGTT
74039380 GGATTACCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.19, C:0.00, G:0.09, T:0.72
Consensus pattern (16 bp):
ATATTTTATTTTGTTT
Found at i:74040317 original size:23 final size:22
Alignment explanation
Indices: 74040257--74040317 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 22
74040247 AGCTCACGTG
*
74040257 GATATACCACTAGTAGATATGTA
1 GATA-ACCACTAGTAGATATGCA
* * *
74040280 GATGACCTGCCAGTAGATATGCA
1 GATAACC-ACTAGTAGATATGCA
74040303 GATAAGCCACTAGTA
1 GATAA-CCACTAGTA
74040318 ACACTTCCTC
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
22 3 0.10
23 24 0.83
24 2 0.07
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (22 bp):
GATAACCACTAGTAGATATGCA
Found at i:74046933 original size:30 final size:30
Alignment explanation
Indices: 74046899--74046967 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
74046889 CCGTGTGCTA
74046899 GGCCGTGTCCCTCACACGGCTGAGACACAC
1 GGCCGTGTCCCTCACACGGCTGAGACACAC
*
74046929 GGCCGTGTCCCTTACACGGCTGAGACACAC
1 GGCCGTGTCCCTCACACGGCTGAGACACAC
*
74046959 GACCGTGTC
1 GGCCGTGTC
74046968 TCTGCCCGTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.19, C:0.38, G:0.28, T:0.16
Consensus pattern (30 bp):
GGCCGTGTCCCTCACACGGCTGAGACACAC
Found at i:74047860 original size:47 final size:45
Alignment explanation
Indices: 74047785--74048055 Score: 219
Period size: 47 Copynumber: 5.8 Consensus size: 45
74047775 GTGGGTAAGG
* *
74047785 TGCCAATGCCATGTCCCAGACACGGTCTTACACTAGCTCATATCTCA
1 TGCCGATG-CATGTCCCAGACA-TGTCTTACACTAGCTCATATCTCA
* * *
74047832 TGTCGATGCCATGTCCCAGACATAGTCTTACA-TTGACT-ATCATCTCG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTCAT-ATCTCA
* *
74047879 TAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTATGTCTCGA
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCATATCTC-A
* * * *
74047926 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTGTC-GA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAG--CTCATATCTCA
* * * *
74047972 TGCCAATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAATGT--
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAG--CTCAT-ATCTCA
* *
74048020 GGCTGATGCATGTCCCAGACATGTCTTACACTAGCT
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCT
74048056 TACAATAACC
Statistics
Matches: 185, Mismatches: 26, Indels: 29
0.77 0.11 0.12
Matches are distributed among these distances:
44 2 0.01
46 68 0.37
47 82 0.44
48 32 0.17
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCATATCTCA
Found at i:74047924 original size:46 final size:46
Alignment explanation
Indices: 74047794--74048057 Score: 222
Period size: 46 Copynumber: 5.7 Consensus size: 46
74047784 GTGCCAATGC
* * * *
74047794 CATGTCCCAGACACGGTCTTACACTAGCTCATATCTCAT-GTCGATG
1 CATGTCCCAGACA-TGTCTTACACTAGCTTATATCTCGTAGCCGATG
*
74047840 CCATGTCCCAGACATAGTCTTACA-TTGAC-TATCATCTCGTAGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAG-CTTAT-ATCTCGTAGCCGATG
*
74047888 CATGTCCCAGACATGTCTTACACTAGCTTATGTCTCG-AGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTATATCTCGTA-GCCGATG
* * *
74047934 CATGTCCCAGACATGTCTTACACTAGC--ACTCGTGTCG-ATGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTTA-T-ATCTCGTA-GCCGATG
* * * * *
74047980 CCATGTCCCAGACATGGTCTTACATTGGCTCTCATA-AT-GTGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCT-T-ATATCTCGTAGCCGATG
74048028 CATGTCCCAGACATGTCTTACACTAGCTTA
1 CATGTCCCAGACATGTCTTACACTAGCTTA
74048058 CAATAACCCA
Statistics
Matches: 182, Mismatches: 19, Indels: 35
0.77 0.08 0.15
Matches are distributed among these distances:
44 2 0.01
45 3 0.02
46 76 0.42
47 75 0.41
48 23 0.13
49 1 0.01
51 1 0.01
52 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTTATATCTCGTAGCCGATG
Found at i:74048046 original size:140 final size:140
Alignment explanation
Indices: 74047794--74048057 Score: 372
Period size: 140 Copynumber: 1.9 Consensus size: 140
74047784 GTGCCAATGC
* *
74047794 CATGTCCCAGACACGGTCTTACACTAGCTCATATCTCATGTCGATGCCATGTCCCAGACATAGTC
1 CATGTCCCAGACACGGTCTTACACTAGCTCATATCTCATGCCAATGCCATGTCCCAGACATAGTC
*
74047859 TTACATTGACTATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTATGTCTC
66 TTACATTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTATGTCTC
74047924 GAGGCCGATG
131 GAGGCCGATG
* * * * *
74047934 CATGTCCCAGACA-TGTCTTACACTAGCACTCGTGTC-GATGCCAATGCCATGTCCCAGACATGG
1 CATGTCCCAGACACGGTCTTACACTAG--CTCATATCTCATGCCAATGCCATGTCCCAGACATAG
* * * *
74047997 TCTTACATTGGCTCTCATAAT-GTGGCTGATGCATGTCCCAGACATGTCTTACACTAGCTTA
64 TCTTACATTGACTATCAT-ATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTA
74048058 CAATAACCCA
Statistics
Matches: 109, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
139 12 0.11
140 90 0.83
141 7 0.06
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (140 bp):
CATGTCCCAGACACGGTCTTACACTAGCTCATATCTCATGCCAATGCCATGTCCCAGACATAGTC
TTACATTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTATGTCTC
GAGGCCGATG
Found at i:74049695 original size:12 final size:12
Alignment explanation
Indices: 74049678--74049707 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
74049668 TCAAGAAGTT
74049678 ACATGGCCTAGC
1 ACATGGCCTAGC
*
74049690 ACATGGCCTGGC
1 ACATGGCCTAGC
74049702 ACATGG
1 ACATGG
74049708 GCGTGTGGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.17
Consensus pattern (12 bp):
ACATGGCCTAGC
Found at i:74053142 original size:43 final size:42
Alignment explanation
Indices: 74053056--74053176 Score: 172
Period size: 43 Copynumber: 2.9 Consensus size: 42
74053046 AGGGTTACTA
* *
74053056 AGATTACGTGTAAGACCATATCTGGGATATGGCATCGATACG
1 AGATTACGTGTAAGACCATATCTAGGATATGGCATTGATACG
* *
74053098 AGACTT-CGTGTAAGACCATAGCTAGGCTATTGGCATTGATACG
1 AGA-TTACGTGTAAGACCATATCTAGGATA-TGGCATTGATACG
*
74053141 AGATTACATGTAAGACCATATCTAGGATATGGCATT
1 AGATTACGTGTAAGACCATATCTAGGATATGGCATT
74053177 AGTACTGTAC
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
42 32 0.46
43 37 0.54
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (42 bp):
AGATTACGTGTAAGACCATATCTAGGATATGGCATTGATACG
Found at i:74059500 original size:26 final size:26
Alignment explanation
Indices: 74059466--74059523 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
74059456 TATGTGGTAA
*
74059466 CTGTGTGAAATAATGGGAATTGTGGG
1 CTGTTTGAAATAATGGGAATTGTGGG
74059492 CTGTTTGAAATAATGGGAATTGTGGG
1 CTGTTTGAAATAATGGGAATTGTGGG
74059518 CTGTTT
1 CTGTTT
74059524 CTAGTATAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.24, C:0.05, G:0.34, T:0.36
Consensus pattern (26 bp):
CTGTTTGAAATAATGGGAATTGTGGG
Found at i:74060115 original size:48 final size:48
Alignment explanation
Indices: 74059955--74060383 Score: 333
Period size: 48 Copynumber: 9.0 Consensus size: 48
74059945 GACATTTGGG
** * * **
74059955 TGATATGTATGCTAGTGTAAGACCATGTCT-GGACATGACGTCGGCCA
1 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGT
* * * * * * * **
74060002 CGATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCAA
1 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGT
* * * * *
74060050 TGTTTTGAGAG-TCAGTGTAAGACCATGTCCGGGACATGGCATCGGCGT
1 TGATATGTGCGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCGT
* *
74060098 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATTGACGT
1 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGT
*
74060146 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTGT
1 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGT
* * * *
74060194 TGATATGTGCGCTAATGTAAGACCATGTCTGGAACATGGCGTCGGC-C
1 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGT
** ** * * * * * * **
74060241 ACACCGTGAGAGCTAGTATAAGATCATGTTTGGGACATGGCATTGGTAT
1 TGA-TATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGT
* * * * * * * *
74060290 TGAGAAGAGAGCTAGTGTATGACCATGTCTGGGACATGGAATCAGCCT
1 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGT
* * * * * * *
74060338 CGACATGTGAGCCAGTGTAAGACCATGTTTGGAACATGACATCGGC
1 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
74060384 AATTCACCCT
Statistics
Matches: 301, Mismatches: 76, Indels: 9
0.78 0.20 0.02
Matches are distributed among these distances:
47 25 0.08
48 274 0.91
49 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (48 bp):
TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGT
Found at i:74061607 original size:20 final size:21
Alignment explanation
Indices: 74061569--74061608 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
74061559 GTTAAGAAAA
*
74061569 CACACGGGTGTGTTGCCCTTC
1 CACACGGGCGTGTTGCCCTTC
74061590 CACACGGGCGTG-TGCCCTT
1 CACACGGGCGTGTTGCCCTT
74061609 GGTTACCTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.10, C:0.35, G:0.30, T:0.25
Consensus pattern (21 bp):
CACACGGGCGTGTTGCCCTTC
Found at i:74063342 original size:42 final size:43
Alignment explanation
Indices: 74063221--74063343 Score: 121
Period size: 42 Copynumber: 2.9 Consensus size: 43
74063211 GGTTACCCAG
**
74063221 ATGTGATTACATGTAAGACCATA-CTTGGGACATCGGCATCTTTA
1 ATGTGATTACATGTAAGACCATATC-TGGGACAT-GGCATCGATA
* *
74063265 AT-TGATTTCGTGTAAGACTC-TATCT-GGACAGTGGCATCGAT-
1 ATGTGATTACATGTAAGAC-CATATCTGGGACA-TGGCATCGATA
* *
74063306 ATGTGATAACATGTAAGACCATATCTGGGATATGGCAT
1 ATGTGATTACATGTAAGACCATATCTGGGACATGGCAT
74063344 TGTACAAGCT
Statistics
Matches: 65, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
41 3 0.05
42 36 0.55
43 22 0.34
44 4 0.06
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATATCTGGGACATGGCATCGATA
Found at i:74064137 original size:22 final size:22
Alignment explanation
Indices: 74064091--74064137 Score: 53
Period size: 22 Copynumber: 2.1 Consensus size: 22
74064081 AGGTAAATTG
*
74064091 TGATAGTTTTGACATAATGATT
1 TGATAGTTTTGACATAATGAAT
74064113 TGATATGTTTTGA-AT-ATGGAAT
1 TGATA-GTTTTGACATAAT-GAAT
74064135 TGA
1 TGA
74064138 GTGTTTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 2 0.09
22 13 0.59
23 7 0.32
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.45
Consensus pattern (22 bp):
TGATAGTTTTGACATAATGAAT
Found at i:74068224 original size:60 final size:60
Alignment explanation
Indices: 74068131--74068250 Score: 195
Period size: 60 Copynumber: 2.0 Consensus size: 60
74068121 GAAGCTCAGA
* *
74068131 AAGTTGATAATGAATTGTTAACAGAACGAGCTCAATGTGATTCGAACTCTGATTCAGAGT
1 AAGTTGATAATGAATTGTTAACAAAACAAGCTCAATGTGATTCGAACTCTGATTCAGAGT
* * *
74068191 AAGTTGATCATGAATTGTTAACAAAACAAGCTCAATGTGATTTGAACTCTGATTTAGAGT
1 AAGTTGATAATGAATTGTTAACAAAACAAGCTCAATGTGATTCGAACTCTGATTCAGAGT
74068251 TTCAAGTTGA
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (60 bp):
AAGTTGATAATGAATTGTTAACAAAACAAGCTCAATGTGATTCGAACTCTGATTCAGAGT
Found at i:74071462 original size:2 final size:2
Alignment explanation
Indices: 74071455--74071492 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
74071445 TTACTTTCAG
*
74071455 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74071493 GCAAGATCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:74075209 original size:47 final size:46
Alignment explanation
Indices: 74075092--74075255 Score: 206
Period size: 47 Copynumber: 3.5 Consensus size: 46
74075082 ATTTATGGTT
***
74075092 AAGGATACCATGTAAGACCATGTCAAGACATGGCA-TTGGCACTAA-AA
1 AAGGATACCATGTAAGACCATGTTTGGACATGGCATTTGG---TAAGAA
*
74075139 CAAGGATACCATGTAAGACCATGTTTGGAACATGGTATTTGGTAAGAA
1 -AAGGATACCATGTAAGACCATGTTTGG-ACATGGCATTTGGTAAGAA
*
74075187 AAGGATACCATGTAAGACCATGTTTGGGACATGGCATTTGGTAAGAT
1 AAGGATACCATGTAAGACCATGTTT-GGACATGGCATTTGGTAAGAA
*
74075234 AAGGATATCATGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
74075256 CCAAAGCATG
Statistics
Matches: 105, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
47 66 0.63
48 28 0.27
49 7 0.07
50 4 0.04
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (46 bp):
AAGGATACCATGTAAGACCATGTTTGGACATGGCATTTGGTAAGAA
Found at i:74075363 original size:55 final size:53
Alignment explanation
Indices: 74075242--74075415 Score: 208
Period size: 55 Copynumber: 3.2 Consensus size: 53
74075232 ATAAGGATAT
* * *
74075242 CATGTAAGACCATGCCAA-AGCATGGCATTGATAAGTTGTATAAGGCAAGGAAAT
1 CATGTAAGACCATGCCAAGA-CATGGCATTGATGAGTTCTATAAGGCAAGG-AAC
* * *
74075296 CATGTAAGACCATGTCAAGACATGGCATTAATGAGTTACTATAAGGCAAAGGACC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC-AAGGAAC
* *
74075351 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATAC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGA-AC
*
74075404 CACGTAAGACCA
1 CATGTAAGACCA
74075416 GACATGGCAA
Statistics
Matches: 104, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
52 5 0.05
53 19 0.18
54 33 0.32
55 43 0.41
56 4 0.04
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (53 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGAAC
Found at i:74078600 original size:71 final size:71
Alignment explanation
Indices: 74078514--74078677 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
74078504 CGATTTGTCT
74078514 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
74078579 CTTTCA
66 CTTTCA
*
74078585 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
74078650 CTTTCA
66 CTTTCA
74078656 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
74078678 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
CTTTCA
Found at i:74078715 original size:71 final size:70
Alignment explanation
Indices: 74078514--74078711 Score: 267
Period size: 71 Copynumber: 2.8 Consensus size: 70
74078504 CGATTTGTCT
* * *
74078514 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAC
74078579 CTTTCA
65 CTTTCA
* * * *
74078585 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAC
74078650 CTTTCA
65 CTTTCA
* *
74078656 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
74078712 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 95 0.79
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTACC
TTTCA
Found at i:74084172 original size:36 final size:36
Alignment explanation
Indices: 74084124--74084196 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
74084114 ATGATTGATA
* * *
74084124 TGAAAGTGAATATGAGGGTGTATTGTTCATGCCATG
1 TGAAAGTAAATATGAGGGTATATTATTCATGCCATG
* *
74084160 TGAAAGTAAATATGTGGGTATGTTATTCATGCCATG
1 TGAAAGTAAATATGAGGGTATATTATTCATGCCATG
74084196 T
1 T
74084197 AACAGTCTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.29, C:0.08, G:0.27, T:0.36
Consensus pattern (36 bp):
TGAAAGTAAATATGAGGGTATATTATTCATGCCATG
Found at i:74087710 original size:44 final size:44
Alignment explanation
Indices: 74087650--74087810 Score: 165
Period size: 43 Copynumber: 3.7 Consensus size: 44
74087640 TGGTATTAAT
*
74087650 TTGAA-TTATCGTGTAAGACCGTGTCTAGGACACAGGCATCGAT-
1 TTGAATTTA-CGTGTAAGACCATGTCTAGGACACAGGCATCGATA
74087693 TTGAAATTTACGTGTAAGACCATGTCTAGGACATC-GGCATC-ATA
1 TTG-AATTTACGTGTAAGACCATGTCTAGGACA-CAGGCATCGATA
* * * *
74087737 TCTG-ATTT-CGTATAAGACCCTGTCTGGGACAGAGGCATCGATA
1 T-TGAATTTACGTGTAAGACCATGTCTAGGACACAGGCATCGATA
* * *
74087780 CTGAA-TTACATGTAAGACCATGTCTAAGACA
1 TTGAATTTACGTGTAAGACCATGTCTAGGACA
74087811 TTGGCATTAT
Statistics
Matches: 98, Mismatches: 11, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 30 0.31
43 31 0.32
44 31 0.32
45 6 0.06
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (44 bp):
TTGAATTTACGTGTAAGACCATGTCTAGGACACAGGCATCGATA
Found at i:74096429 original size:152 final size:152
Alignment explanation
Indices: 74096236--74096546 Score: 489
Period size: 152 Copynumber: 2.0 Consensus size: 152
74096226 AATTGGCAAG
* * * *
74096236 TTAGTCAAGGTACAAGTGGTGCGTACTGAAAGTCAAGTGGTTTTGAAAAATGAGGTATCAGGACC
1 TTAGTGAAGGTACAAGTGGTGCATACCGAAAGTCAAGTGGTTTTAAAAAATGAGGTATCAGGACC
* * *
74096301 TTGTTTT-TGTAAATCGAGCCTGTGAATATTTTTATTAAATATTTATGAAGCTTTTATATAGGTG
66 TTGTTTTCT-TAAATCGAGCCCGTGAATATTTTTATTAAATATTTACGAAGCTTTTATATAAGTG
74096365 AATTGAAGTTTGGTCCAAAAATT
130 AATTGAAGTTTGGTCCAAAAATT
* *
74096388 TTGGTGAAGGTACAAGTGGTGCATACCGAAAGTCAAGTGGTTTTAAAAAATGAGGTATCGGGACC
1 TTAGTGAAGGTACAAGTGGTGCATACCGAAAGTCAAGTGGTTTTAAAAAATGAGGTATCAGGACC
* * *
74096453 TTGTTTTCTTAAATTGAGCCCGTGAATATTTTTATTAAATATTTACGGAGTTTTTATATAAGTGA
66 TTGTTTTCTTAAATCGAGCCCGTGAATATTTTTATTAAATATTTACGAAGCTTTTATATAAGTGA
*
74096518 ATTGAAGTTTGGTCTAAAAATT
131 ATTGAAGTTTGGTCCAAAAATT
74096540 TTAGTGA
1 TTAGTGA
74096547 TTGAATGATT
Statistics
Matches: 144, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
152 143 0.99
153 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.37
Consensus pattern (152 bp):
TTAGTGAAGGTACAAGTGGTGCATACCGAAAGTCAAGTGGTTTTAAAAAATGAGGTATCAGGACC
TTGTTTTCTTAAATCGAGCCCGTGAATATTTTTATTAAATATTTACGAAGCTTTTATATAAGTGA
ATTGAAGTTTGGTCCAAAAATT
Found at i:74098341 original size:8 final size:8
Alignment explanation
Indices: 74098328--74098355 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
74098318 TATGGAATGG
74098328 TTTTCATA
1 TTTTCATA
74098336 TTTTCATA
1 TTTTCATA
74098344 TTTTCATA
1 TTTTCATA
74098352 TTTT
1 TTTT
74098356 TGTTATTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.21, C:0.11, G:0.00, T:0.68
Consensus pattern (8 bp):
TTTTCATA
Found at i:74099334 original size:44 final size:44
Alignment explanation
Indices: 74099271--74099428 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 44
74099261 ATGTGTTATT
* * *
74099271 GTGTAAGACCACGTCTGGGACGGTGGCATCGACT-TATGATTTAC
1 GTGTAAGACCACATCTGGGACAGTGGCATCGA-TATTTGATTTAC
* *
74099315 GTGTAAGACCATATCTGGGACATTGGCATC-ATATTTGATTT-C
1 GTGTAAGACCACATCTGGGACAGTGGCATCGATATTTGATTTAC
* * *
74099357 GTGTAAGACC-CTATTTGGGACAGTGGCATTGATGTTTGA-TTAC
1 GTGTAAGACCAC-ATCTGGGACAGTGGCATCGATATTTGATTTAC
* * * *
74099400 ATGTAAGACCACGTCTGGGATATTGGCAT
1 GTGTAAGACCACATCTGGGACAGTGGCAT
74099429 TGTATGTACT
Statistics
Matches: 94, Mismatches: 15, Indels: 11
0.78 0.12 0.09
Matches are distributed among these distances:
42 29 0.31
43 38 0.40
44 27 0.29
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.32
Consensus pattern (44 bp):
GTGTAAGACCACATCTGGGACAGTGGCATCGATATTTGATTTAC
Found at i:74100149 original size:12 final size:10
Alignment explanation
Indices: 74100101--74100147 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
74100091 TATTGGAACA
74100101 TATGATTTGG
1 TATGATTTGG
*
74100111 TATGATTTTAG
1 TATGA-TTTGG
*
74100122 TTTAGATTTGG
1 TAT-GATTTGG
74100133 TATGATTTGG
1 TATGATTTGG
74100143 T-TGAT
1 TATGAT
74100148 GAATTGAGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
9 4 0.13
10 13 0.42
11 12 0.39
12 2 0.06
ACGTcount: A:0.21, C:0.00, G:0.26, T:0.53
Consensus pattern (10 bp):
TATGATTTGG
Found at i:74109163 original size:40 final size:40
Alignment explanation
Indices: 74109096--74109382 Score: 456
Period size: 40 Copynumber: 7.2 Consensus size: 40
74109086 CCTTCGGAGT
* *
74109096 TTAG-CCGGATATAGCT-ACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
*
74109135 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
74109175 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
74109215 TTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
74109255 TTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
74109295 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-C
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
74109334 TTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
74109374 TTAGCCCGG
1 TTAGCCCGG
74109383 GTATCAATCC
Statistics
Matches: 236, Mismatches: 8, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
38 1 0.00
39 40 0.17
40 195 0.83
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:74112408 original size:39 final size:39
Alignment explanation
Indices: 74112364--74112484 Score: 224
Period size: 39 Copynumber: 3.1 Consensus size: 39
74112354 AATTATGTTA
74112364 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
74112403 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
74112442 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
74112481 CCAG
1 CCAG
74112485 TGTCTTGCTT
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.21
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:74117197 original size:40 final size:40
Alignment explanation
Indices: 74117047--74117214 Score: 142
Period size: 40 Copynumber: 4.2 Consensus size: 40
74117037 CGGAATACAA
* * *
74117047 CCGGATATAACCA-CATGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAATCACCA-GCACAAATGCCTTCGGGTCTTAGC
* ** * *
74117087 CCGGATAGAA-CGACTTGCGCGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACCAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
74117127 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
** * * *
74117167 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
74117207 CCGGATAT
1 CCGGATAT
74117215 CATTCAATTG
Statistics
Matches: 102, Mismatches: 23, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
39 1 0.01
40 100 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74118469 original size:21 final size:22
Alignment explanation
Indices: 74118445--74118493 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
74118435 GGATGAACAC
74118445 TTTTCTTCCTTTCTTT-TTTTT
1 TTTTCTTCCTTTCTTTGTTTTT
* *
74118466 TTTTTTTTCTTTCTTTGTTTTT
1 TTTTCTTCCTTTCTTTGTTTTT
*
74118488 GTTTCT
1 TTTTCT
74118494 CTCATGTACG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.00, C:0.14, G:0.04, T:0.82
Consensus pattern (22 bp):
TTTTCTTCCTTTCTTTGTTTTT
Found at i:74119379 original size:46 final size:46
Alignment explanation
Indices: 74119312--74119483 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
74119302 AACCTGCCCC
*
74119312 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
74119358 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * *
74119406 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
74119451 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
74119484 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 59 0.57
47 27 0.26
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:74119424 original size:93 final size:93
Alignment explanation
Indices: 74119317--74119487 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
74119307 GCCCCTAAGT
* * *
74119317 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74119382 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
74119410 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74119475 CGAGTTCGGATGC
66 CGAGTTCGGATGC
74119488 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:74125150 original size:39 final size:39
Alignment explanation
Indices: 74125106--74125226 Score: 215
Period size: 39 Copynumber: 3.1 Consensus size: 39
74125096 AATCATGTTA
*
74125106 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
74125145 CCAGCACGAAGCCTGCGGGACTTTAGCCTGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
74125184 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
74125223 CCAG
1 CCAG
74125227 TGTCTTGCTT
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:74127065 original size:28 final size:28
Alignment explanation
Indices: 74127026--74127125 Score: 128
Period size: 28 Copynumber: 3.6 Consensus size: 28
74127016 ATATTTGATG
* *
74127026 TCTCACACACTAAGTGTCATACTCAACA
1 TCTCGCACACTAAGTGTCATACTCAATA
* * * * *
74127054 ACTCGCCCACTAAGTGCCATTCTCAATG
1 TCTCGCACACTAAGTGTCATACTCAATA
*
74127082 TTTCGCACACTAAGTGTCATACTCAATA
1 TCTCGCACACTAAGTGTCATACTCAATA
74127110 TCTCGCACACTAAGTG
1 TCTCGCACACTAAGTG
74127126 CCGTACATAG
Statistics
Matches: 58, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 58 1.00
ACGTcount: A:0.30, C:0.31, G:0.12, T:0.27
Consensus pattern (28 bp):
TCTCGCACACTAAGTGTCATACTCAATA
Found at i:74127202 original size:41 final size:41
Alignment explanation
Indices: 74127154--74127294 Score: 198
Period size: 41 Copynumber: 3.5 Consensus size: 41
74127144 ATCTCAAATC
* * *
74127154 GCACACTAAATGCCACATTTAACTGAAGCTATTTTTGAACA
1 GCACACTAAGTGCCACATTTAGCCGAAGCTATTTTTGAACA
* *
74127195 GCACACTAAGTACCACATTTAGCCGAAGCTATTTTTGAACC
1 GCACACTAAGTGCCACATTTAGCCGAAGCTATTTTTGAACA
*
74127236 GCACACTAAGTGCCACATTTAGCCGAAGCTATTTTCGAAC-
1 GCACACTAAGTGCCACATTTAGCCGAAGCTATTTTTGAACA
*
74127276 -CGCA-TAAGTGCCACATTTA
1 GCACACTAAGTGCCACATTTA
74127295 CTCGGTATGT
Statistics
Matches: 92, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
38 15 0.16
39 3 0.03
41 74 0.80
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.27
Consensus pattern (41 bp):
GCACACTAAGTGCCACATTTAGCCGAAGCTATTTTTGAACA
Found at i:74128686 original size:20 final size:20
Alignment explanation
Indices: 74128661--74128750 Score: 146
Period size: 20 Copynumber: 4.5 Consensus size: 20
74128651 TATGTAGAGG
74128661 CACGCCCGTGTGCATCGGGA
1 CACGCCCGTGTGCATCGGGA
74128681 CACGCCCGTGTGCATCGGGA
1 CACGCCCGTGTGCATCGGGA
*
74128701 CACACCCGTGTGCATCGGGA
1 CACGCCCGTGTGCATCGGGA
*
74128721 CACGCCCGT-TGCATCAGGA
1 CACGCCCGTGTGCATCGGGA
*
74128740 CACACCCGTGT
1 CACGCCCGTGT
74128751 CCCTTATCCA
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
19 17 0.26
20 48 0.74
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.16
Consensus pattern (20 bp):
CACGCCCGTGTGCATCGGGA
Found at i:74129095 original size:25 final size:25
Alignment explanation
Indices: 74129061--74129109 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
74129051 CAGTGGACAC
74129061 ATGGCCGTACAACACGCTCATGGGA
1 ATGGCCGTACAACACGCTCATGGGA
74129086 ATGGCCGTACAACACGCTCATGGG
1 ATGGCCGTACAACACGCTCATGGG
74129110 GCTGACCGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.27, C:0.29, G:0.29, T:0.16
Consensus pattern (25 bp):
ATGGCCGTACAACACGCTCATGGGA
Found at i:74129118 original size:25 final size:25
Alignment explanation
Indices: 74129065--74129118 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
74129055 GGACACATGG
*
74129065 CCGTACAACACGCTCATGGGAATGG
1 CCGTACAACACGCTCATGGGAATGA
**
74129090 CCGTACAACACGCTCATGGGGCTGA
1 CCGTACAACACGCTCATGGGAATGA
74129115 CCGT
1 CCGT
74129119 GTGTCACACA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (25 bp):
CCGTACAACACGCTCATGGGAATGA
Found at i:74132923 original size:44 final size:42
Alignment explanation
Indices: 74132855--74132958 Score: 138
Period size: 44 Copynumber: 2.4 Consensus size: 42
74132845 ATATGTGTTA
**
74132855 TCGTGTAAGACCACATCTGGGACATTGGCATCG-ACTTATGATT
1 TCGTGTAAGACCATGTCTGGGACATTGGCATCGTA-TT-TGATT
*
74132898 TACGTGTAAGACCATGTCTGTGACATTGGCATCGTATTTGATT
1 T-CGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATT
*
74132941 TCGTGTAAGACCCTGTCT
1 TCGTGTAAGACCATGTCT
74132959 AGGATAGTGG
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
42 16 0.29
43 7 0.13
44 31 0.56
45 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATT
Found at i:74132970 original size:42 final size:44
Alignment explanation
Indices: 74132856--74132971 Score: 123
Period size: 44 Copynumber: 2.7 Consensus size: 44
74132846 TATGTGTTAT
** * *
74132856 CGTGTAAGACCACATCTGGGACATTGGCATCGACTTATGATTTA
1 CGTGTAAGACCATGTCTGTGACAGTGGCATCGACTTATGATTTA
*
74132900 CGTGTAAGACCATGTCTGTGACATTGGCATCGTA-TT-TGATTT-
1 CGTGTAAGACCATGTCTGTGACAGTGGCATCG-ACTTATGATTTA
* *
74132942 CGTGTAAGACCCTGTCTAG-GATAGTGGCAT
1 CGTGTAAGACCATGTCT-GTGACAGTGGCAT
74132972 TGATGTTTGA
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
42 25 0.39
43 7 0.11
44 31 0.48
45 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (44 bp):
CGTGTAAGACCATGTCTGTGACAGTGGCATCGACTTATGATTTA
Found at i:74133486 original size:13 final size:13
Alignment explanation
Indices: 74133468--74133492 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74133458 GTAAGTGATT
74133468 TTGATGATTTTTC
1 TTGATGATTTTTC
74133481 TTGATGATTTTT
1 TTGATGATTTTT
74133493 GCACTTTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:74134339 original size:46 final size:46
Alignment explanation
Indices: 74134195--74134365 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 46
74134185 ATTGTGTGCT
* *
74134195 AGTGTAAGACATGTCTAGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGA-AATGAGAGCC
* * * * * * * *
74134241 AGTGTAAGACCATGTCTGGGACATGGAATCGGCATTGAGACGAGGGCT
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAAATGAGAGCC
*
74134289 AGTGTAAGACATGTCTAGGATATGCATCGGCCTCGAAATGTA-AGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAAATG-AGAGCC
* *
74134335 AGTGTAAGACATGTATGGGACATGCATCGGC
1 AGTGTAAGACATGTCTAGGACATGCATCGGC
74134366 ACAGATACGT
Statistics
Matches: 100, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
46 51 0.51
47 26 0.26
48 22 0.22
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAAATGAGAGCC
Found at i:74134387 original size:94 final size:94
Alignment explanation
Indices: 74134193--74134407 Score: 242
Period size: 94 Copynumber: 2.3 Consensus size: 94
74134183 TAATTGTGTG
* *
74134193 CTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
1 CTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATAATGAGAGCCAGTGTAAGACCATGTAT
** *
74134258 GGGACATGGAATCGGCATTGAGACGAGGG
66 GGGACATGGAATCGGCACAGAGACGAGGA
* *
74134287 CTAGTGTAAGACATGTCTAGGATATGCATCGGCCTCGA-AATGTA-AGCCAGTGTAAGA-CATGT
1 CTAGTGTAAGACATGTCTAGGACATGCATCGGCCAC-ATAATG-AGAGCCAGTGTAAGACCATGT
* *
74134349 ATGGGACAT-GCATCGGCACAGATACGTGAGAGA
64 ATGGGACATGGAATCGGCACAGAGAC--GAG-GA
* *
74134382 C-AGTGTAAGACCATGCCTGGGACATG
1 CTAGTGTAAGA-CATGTCTAGGACATG
74134408 GCATTGGCAT
Statistics
Matches: 103, Mismatches: 12, Indels: 11
0.82 0.10 0.09
Matches are distributed among these distances:
92 12 0.12
93 13 0.13
94 62 0.60
95 16 0.16
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.21
Consensus pattern (94 bp):
CTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATAATGAGAGCCAGTGTAAGACCATGTAT
GGGACATGGAATCGGCACAGAGACGAGGA
Found at i:74137179 original size:24 final size:23
Alignment explanation
Indices: 74137133--74137181 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
74137123 GACTTAATAT
*
74137133 TGATGTTTGAATATGTTTGTAAA
1 TGATGTTTGAATATGTGTGTAAA
74137156 TGATGTATATGAAT-TGTGTGTAAA
1 TGATGT-T-TGAATATGTGTGTAAA
74137180 TG
1 TG
74137182 TTCTGGTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 6 0.26
24 12 0.52
25 5 0.22
ACGTcount: A:0.31, C:0.00, G:0.24, T:0.45
Consensus pattern (23 bp):
TGATGTTTGAATATGTGTGTAAA
Found at i:74140552 original size:23 final size:23
Alignment explanation
Indices: 74140525--74140573 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
74140515 TCATTCAATA
* *
74140525 TTACTTTTACTCACTTATTTCTT
1 TTACTTTTACTCACTCAATTCTT
*
74140548 TTACTTTTACTCTCTCAATTCTT
1 TTACTTTTACTCACTCAATTCTT
74140571 TTA
1 TTA
74140574 ATTCATAACA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.18, C:0.22, G:0.00, T:0.59
Consensus pattern (23 bp):
TTACTTTTACTCACTCAATTCTT
Found at i:74145332 original size:20 final size:20
Alignment explanation
Indices: 74145303--74145342 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
74145293 AAGTAAACTT
*
74145303 CTCCCTTTTTAGATAGAATG
1 CTCCCCTTTTAGATAGAATG
74145323 CTCCCCTTTTAGATAGAATG
1 CTCCCCTTTTAGATAGAATG
74145343 AGTATAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.38
Consensus pattern (20 bp):
CTCCCCTTTTAGATAGAATG
Found at i:74154880 original size:43 final size:42
Alignment explanation
Indices: 74154810--74154967 Score: 165
Period size: 43 Copynumber: 3.7 Consensus size: 42
74154800 AGCTCGTACA
* * * *
74154810 ATGCCAACGTCCTAGACATGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATA-CG
* * * *
74154853 ATGCCATTGTCCCAGACAAGGTTTTACACGAAATCATATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATACG
*
74154895 ATGCCAATATCCCAGACATGGTCTTACACGCAAATCACAAGT-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAATCA-AA-TACG
* * *
74154939 ATGCCAATGTTCTAGACGTGGTCTTACAC
1 ATGCCAATGTCCCAGACATGGTCTTACAC
74154968 AATATCACAC
Statistics
Matches: 95, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
42 28 0.29
43 38 0.40
44 28 0.29
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATACG
Found at i:74154910 original size:42 final size:43
Alignment explanation
Indices: 74154823--74154967 Score: 150
Period size: 42 Copynumber: 3.4 Consensus size: 43
74154813 CCAACGTCCT
* * * *
74154823 AGACATGGTCTTACATGTAATCAAATATCGATGCCATTGTCCC
1 AGACATGGTCTTACACGAAATCAAATATCGATGCCAATATCCC
* * *
74154866 AGACAAGGTTTTACACGAAATCATATA-CGATGCCAATATCCC
1 AGACATGGTCTTACACGAAATCAAATATCGATGCCAATATCCC
* * * *
74154908 AGACATGGTCTTACACGCAAATCACAA-GTCGATGCCAATGTTCT
1 AGACATGGTCTTACACG-AAATCA-AATATCGATGCCAATATCCC
*
74154952 AGACGTGGTCTTACAC
1 AGACATGGTCTTACAC
74154968 AATATCACAC
Statistics
Matches: 84, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
42 28 0.33
43 28 0.33
44 28 0.33
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.26
Consensus pattern (43 bp):
AGACATGGTCTTACACGAAATCAAATATCGATGCCAATATCCC
Found at i:74157256 original size:85 final size:85
Alignment explanation
Indices: 74157134--74157529 Score: 376
Period size: 85 Copynumber: 4.7 Consensus size: 85
74157124 TTTGTTTCCA
* * * *
74157134 AATTAAAAGTGAATAAAATCTATTTCGGGATTTATTCCCACCGTTCAACGGATTTTATTCCATTT
1 AATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCACCGTTCAACAGATTTTATTCCATTT
74157199 TTATTTTATTTCTAAACGAG
66 TTATTTTATTTCTAAACGAG
* * * *
74157219 AATTAAAGTTAAATAAAATCTGTTTCGGGATTTATTCCCACCATTCAACAAACTTTATTCCATTT
1 AATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCACCGTTCAACAGATTTTATTCCATTT
*
74157284 TTATTTGATTTC----C-A-
66 TTATTTTATTTCTAAACGAG
* * **** * *
74157298 AATGAGAATTAAATAAAATCTGTTTCGGGATTTATTCTTGTCGTTCAACATATTTTATTCTATTT
1 AATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCACCGTTCAACAGATTTTATTCCA-TT
* * * *
74157363 TTTAGTTTGTTGCCAAAACGAG
65 TTTATTTTATT-TCTAAACGAG
* * ** * * * * *
74157385 AAATTAAAATTAAATAAAATCTATTTCAGGATTTATTCCCGTCATTTAATAAGATTTTATT-TAA
1 -AATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCACCGTTCAA-CAGATTTTATTCCAT
* **
74157449 TTTTATTTTGTTT-TCAAATTAG
64 TTTTATTTTATTTCT-AAACGAG
* *
74157471 AATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCACCGTTTAACAGATTCTATT
1 AATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCACCGTTCAACAGATTTTATT
74157530 TTGATTTAAT
Statistics
Matches: 253, Mismatches: 47, Indels: 23
0.78 0.15 0.07
Matches are distributed among these distances:
79 51 0.20
80 11 0.04
81 2 0.01
84 9 0.04
85 112 0.44
86 6 0.02
87 11 0.04
88 42 0.17
89 9 0.04
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.43
Consensus pattern (85 bp):
AATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCACCGTTCAACAGATTTTATTCCATTT
TTATTTTATTTCTAAACGAG
Found at i:74162267 original size:6 final size:6
Alignment explanation
Indices: 74162256--74162321 Score: 51
Period size: 6 Copynumber: 11.0 Consensus size: 6
74162246 GTCTTAGTAG
* * *** * *
74162256 CAAATA CAAATA TAGATA CAAATA TTTATG CAAATA CAAATA CTAATA
1 CAAATA CAAATA CAAATA CAAATA CAAATA CAAATA CAAATA CAAATA
* *
74162304 CAAACA CGAATA CAAATA
1 CAAATA CAAATA CAAATA
74162322 TAGATCCTAC
Statistics
Matches: 42, Mismatches: 18, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.58, C:0.15, G:0.05, T:0.23
Consensus pattern (6 bp):
CAAATA
Found at i:74162629 original size:2 final size:2
Alignment explanation
Indices: 74162622--74162655 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
74162612 TGACATATGC
74162622 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74162656 CATACATGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74169018 original size:72 final size:72
Alignment explanation
Indices: 74168932--74169074 Score: 214
Period size: 72 Copynumber: 2.0 Consensus size: 72
74168922 GGGCTTGCAT
* ** *
74168932 TTTGCTGCTCGCAACTATACACCTTTGACAGGCTCGCTTTTTTGCTTACTGTCTTCAACAGGTGT
1 TTTGCTGCTCGCAACCATACACCTTTGACAGGCTCGCACTTTGGCTTACTGTCTTCAACAGGTGT
74168997 CTTCAAC
66 CTTCAAC
* ***
74169004 TTTGCTGCTTGCAACCATACACCTTTGACAGGCTCGCACTTTGGCTTACTGTCTTCAGTTGGTGT
1 TTTGCTGCTCGCAACCATACACCTTTGACAGGCTCGCACTTTGGCTTACTGTCTTCAACAGGTGT
74169069 CTTCAA
66 CTTCAA
74169075 TAGGCTCGCA
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
72 63 1.00
ACGTcount: A:0.17, C:0.27, G:0.18, T:0.37
Consensus pattern (72 bp):
TTTGCTGCTCGCAACCATACACCTTTGACAGGCTCGCACTTTGGCTTACTGTCTTCAACAGGTGT
CTTCAAC
Found at i:74170534 original size:96 final size:96
Alignment explanation
Indices: 74170370--74170561 Score: 285
Period size: 96 Copynumber: 2.0 Consensus size: 96
74170360 AACAAAAGGA
* * ** * *
74170370 GGAATACGATTGAGCTATCACCTTTTGTGCACTGTTATTGGTATAGTTGAAAATATCACAAGGCT
1 GGAATACGATTGAGATATAACCTTTTGTGCAAAGTTATTGGTATAGTTCAAAAGATCACAAGGCT
*
74170435 TTCCAATGTCCAATTAAATATTCAAATAGAG
66 TTCCAATGTCCAATTAAATATCCAAATAGAG
* * *
74170466 GGAATACGATTGAGATATAACCTTTTGTGCAAAGTTATTGGTGTAGTTCAAAAGATCATAAGGGT
1 GGAATACGATTGAGATATAACCTTTTGTGCAAAGTTATTGGTATAGTTCAAAAGATCACAAGGCT
*
74170531 TTCCAATGTCCAATTAAATATCCAACTAGAG
66 TTCCAATGTCCAATTAAATATCCAAATAGAG
74170562 AAGGAAGTAA
Statistics
Matches: 85, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
96 85 1.00
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (96 bp):
GGAATACGATTGAGATATAACCTTTTGTGCAAAGTTATTGGTATAGTTCAAAAGATCACAAGGCT
TTCCAATGTCCAATTAAATATCCAAATAGAG
Found at i:74173282 original size:49 final size:49
Alignment explanation
Indices: 74173220--74173403 Score: 208
Period size: 49 Copynumber: 3.7 Consensus size: 49
74173210 CAAGGCTATT
*
74173220 TGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATC
* * * * * *
74173269 TGGTACACGTAGTAGCTTGCACTTAGTACTGCACACGTGATCGAAGTTATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATC
* * * *
74173320 GGGTACACATAATAGGCTACACTTAGTACTACACATGCGACCAATTATCC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTAT-C
** *
74173370 T-GTACATGTAGTAGCCTGCACTTAATACTACACA
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACA
74173404 CGTGACCTCA
Statistics
Matches: 108, Mismatches: 24, Indels: 6
0.78 0.17 0.04
Matches are distributed among these distances:
49 65 0.60
50 7 0.06
51 36 0.33
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.27
Consensus pattern (49 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATC
Found at i:74173404 original size:100 final size:100
Alignment explanation
Indices: 74173221--74173408 Score: 288
Period size: 100 Copynumber: 1.9 Consensus size: 100
74173211 AAGGCTATTT
* * * *
74173221 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCT
1 GGTACACATAATAGCCTACACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCC
* *
74173286 TGCACTTAGTACTGCACACGTGATCGAAGTTATCG
66 TGCACTTAATACTACACACGTGATCGAAGTTATCG
* *
74173321 GGTACACATAATAGGCTACACTTAGTACTACACATGCGACCAATTATCCT-GTACATGTAGTAGC
1 GGTACACATAATAGCCTACACTTAGTACTACACATGCGACCAATTAT-CTGGTACACGTAGTAGC
74173385 CTGCACTTAATACTACACACGTGA
65 CTGCACTTAATACTACACACGTGA
74173409 CCTCACAATA
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
100 77 0.97
101 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (100 bp):
GGTACACATAATAGCCTACACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCC
TGCACTTAATACTACACACGTGATCGAAGTTATCG
Found at i:74173687 original size:27 final size:27
Alignment explanation
Indices: 74173657--74173710 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
74173647 TCATACAACC
* *
74173657 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
74173684 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
74173711 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:74176514 original size:36 final size:36
Alignment explanation
Indices: 74176468--74176594 Score: 111
Period size: 36 Copynumber: 3.6 Consensus size: 36
74176458 AAGATCATTT
74176468 TTGTGCCTAGCACTAGTCGAACAAATCGACAAATTA
1 TTGTGCCTAGCACTAGTCGAACAAATCGACAAATTA
* * * * *
74176504 TTGTGTCTAGCGCTAGTC-ATATAACT-GAC-GA-TA
1 TTGTGCCTAGCACTAGTCGA-ACAAATCGACAAATTA
* *
74176537 GTTGTGCCCAGCACTAGTCGAACAAGTCGACAAATTA
1 -TTGTGCCTAGCACTAGTCGAACAAATCGACAAATTA
* *
74176574 TTGAGCCCAG-AGCTAGTCGAA
1 TTGTGCCTAGCA-CTAGTCGAA
74176595 TAACCTATGA
Statistics
Matches: 72, Mismatches: 12, Indels: 14
0.73 0.12 0.14
Matches are distributed among these distances:
33 2 0.03
34 20 0.28
35 9 0.12
36 39 0.54
37 2 0.03
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.25
Consensus pattern (36 bp):
TTGTGCCTAGCACTAGTCGAACAAATCGACAAATTA
Found at i:74176589 original size:70 final size:69
Alignment explanation
Indices: 74176468--74176683 Score: 267
Period size: 70 Copynumber: 3.1 Consensus size: 69
74176458 AAGATCATTT
* * * * *
74176468 TTGTGCCTAGCACTAGTCGAACAAATCGACAAATTATTGTGTCTAGCGCTAGTCATATAACTGAC
1 TTGTGCCCAGCACTAGTCGAACAAGTCGACAAATTATTGAGCCCAGCGCTAGTCA-ATAACTGAC
74176533 GATAG
65 GATAG
*
74176538 TTGTGCCCAGCACTAGTCGAACAAGTCGACAAATTATTGAGCCCAGAGCTAGTCGAATAACCT-A
1 TTGTGCCCAGCACTAGTCGAACAAGTCGACAAATTATTGAGCCCAGCGCTAGTC-AATAA-CTGA
*
74176602 TGATAG
64 CGATAG
* * *
74176608 TTGTGCCC-GACACTAGTTGAACAAGTCAACAAATTATT-ATGCCCAGCGCTAGTCGGATAACTG
1 TTGTGCCCAG-CACTAGTCGAACAAGTCGACAAATTATTGA-GCCCAGCGCTAGTC-AATAACTG
74176671 ACGATAG
63 ACGATAG
74176678 TTGTGC
1 TTGTGC
74176684 TCACCAAGAA
Statistics
Matches: 129, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
69 4 0.03
70 122 0.95
71 3 0.02
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (69 bp):
TTGTGCCCAGCACTAGTCGAACAAGTCGACAAATTATTGAGCCCAGCGCTAGTCAATAACTGACG
ATAG
Found at i:74181626 original size:5 final size:5
Alignment explanation
Indices: 74181616--74181641 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
74181606 TGAGCATTCG
74181616 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
74181642 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:74182680 original size:9 final size:9
Alignment explanation
Indices: 74182666--74182702 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
74182656 TATAGTTTGA
74182666 TATTCGAAT
1 TATTCGAAT
74182675 TATTCGAAT
1 TATTCGAAT
*
74182684 TATTCGAGT
1 TATTCGAAT
74182693 TATTCGAAT
1 TATTCGAAT
74182702 T
1 T
74182703 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:74182767 original size:9 final size:9
Alignment explanation
Indices: 74182753--74182785 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
74182743 ATTCGAGTTG
74182753 ACTCGAATA
1 ACTCGAATA
*
74182762 ACTCGATTA
1 ACTCGAATA
74182771 ACTCGAATA
1 ACTCGAATA
74182780 ACTCGA
1 ACTCGA
74182786 TTCGTTTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.24
Consensus pattern (9 bp):
ACTCGAATA
Found at i:74182776 original size:18 final size:18
Alignment explanation
Indices: 74182753--74182787 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
74182743 ATTCGAGTTG
74182753 ACTCGAATAACTCGATTA
1 ACTCGAATAACTCGATTA
74182771 ACTCGAATAACTCGATT
1 ACTCGAATAACTCGATT
74182788 CGTTTAACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (18 bp):
ACTCGAATAACTCGATTA
Found at i:74183208 original size:18 final size:19
Alignment explanation
Indices: 74183185--74183222 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
74183175 ATATTTTATG
*
74183185 TTATGTTATTT-TAATATA
1 TTATGTAATTTATAATATA
74183203 TTATGTAATTTATAATATA
1 TTATGTAATTTATAATATA
74183222 T
1 T
74183223 AAAAATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (19 bp):
TTATGTAATTTATAATATA
Found at i:74183264 original size:30 final size:28
Alignment explanation
Indices: 74183218--74183289 Score: 74
Period size: 30 Copynumber: 2.5 Consensus size: 28
74183208 TAATTTATAA
* *
74183218 TATATAAAAATTAAATTTTTAGTAGT-AT
1 TATATAAAAATTAAATTGTTA-AAGTGAT
*
74183246 TATATAAATATTAAAAATTGTTAAAGTGAT
1 TATATAAAAATT--AAATTGTTAAAGTGAT
74183276 TATATATAAAATTA
1 TATATA-AAAATTA
74183290 TTAAATATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
28 11 0.31
29 4 0.11
30 16 0.44
31 5 0.14
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (28 bp):
TATATAAAAATTAAATTGTTAAAGTGAT
Found at i:74201432 original size:166 final size:167
Alignment explanation
Indices: 74201154--74201483 Score: 479
Period size: 166 Copynumber: 2.0 Consensus size: 167
74201144 ATGCAATATT
* *
74201154 AAAGCATTTAAAGCATGCTATATGTTGCATTATTTGCGAATGAAGTTACCTCGGTACAAAAATGA
1 AAAGCATTTAAAGCATGCTATATGTTGCATTATTTGCAAATGAACTTACCTCGGTACAAAAATGA
* * * * *
74201219 TAGAAACGAGCCTAATCCTCGTAAACTTTATTTTTCCTCTGATCAAGACCCAAATCACATTT-TT
66 TAGAAACAAGCCTAATCATCGTAAACCTTATTTTCCCCCTGATCAAGACCCAAATCAC-TTTCTT
*
74201283 CTT-G-ATTTATAATGCCAAATTTAACTTTCTCAATGCC
130 -TTAGTATCTATAATGCCAAATTTAACTTTCTCAATGCC
* * *
74201320 AAAGCATTTAAAGCATGGTATATGTTGTATTATTTGCAAATGAACTTACCTTGGTACAAAAATGA
1 AAAGCATTTAAAGCATGCTATATGTTGCATTATTTGCAAATGAACTTACCTCGGTACAAAAATGA
* * *
74201385 TAGAAACAAGCCTAGTCATCGTAAACCTTGTTCTTCCCCCT-ATCAAGACCCGAATCACTTTCTT
66 TAGAAACAAGCCTAATCATCGTAAACCTTATT-TTCCCCCTGATCAAGACCCAAATCACTTTCTT
74201449 TTAGTATCTATAATGCCAAATTTAACTTTCTCAAT
130 TTAGTATCTATAATGCCAAATTTAACTTTCTCAAT
74201484 ACACATATTA
Statistics
Matches: 146, Mismatches: 14, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
165 5 0.03
166 106 0.73
167 35 0.24
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.34
Consensus pattern (167 bp):
AAAGCATTTAAAGCATGCTATATGTTGCATTATTTGCAAATGAACTTACCTCGGTACAAAAATGA
TAGAAACAAGCCTAATCATCGTAAACCTTATTTTCCCCCTGATCAAGACCCAAATCACTTTCTTT
TAGTATCTATAATGCCAAATTTAACTTTCTCAATGCC
Found at i:74203821 original size:16 final size:16
Alignment explanation
Indices: 74203801--74203865 Score: 76
Period size: 16 Copynumber: 4.1 Consensus size: 16
74203791 TTTGGTTCAT
* *
74203801 TGTAATGGAATAGGGT
1 TGTAATGGAATAGAGC
*
74203817 TGTAATTGAATAGAGC
1 TGTAATGGAATAGAGC
* * *
74203833 TATAATTGAATAAAGC
1 TGTAATGGAATAGAGC
74203849 TGTAATGGAATAGAGC
1 TGTAATGGAATAGAGC
74203865 T
1 T
74203866 ATAGTCAGTA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 41 1.00
ACGTcount: A:0.38, C:0.05, G:0.26, T:0.31
Consensus pattern (16 bp):
TGTAATGGAATAGAGC
Found at i:74205545 original size:40 final size:40
Alignment explanation
Indices: 74205500--74205667 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
74205490 CGGAATACAA
74205500 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
74205540 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
74205580 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
74205620 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
74205660 CCGGATAT
1 CCGGATAT
74205668 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:74213597 original size:40 final size:40
Alignment explanation
Indices: 74213552--74213719 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
74213542 CGGAATACAA
74213552 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
74213592 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
74213632 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
74213672 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
74213712 CCGGATAT
1 CCGGATAT
74213720 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:74221644 original size:40 final size:40
Alignment explanation
Indices: 74221599--74221766 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
74221589 CGGAATACAA
74221599 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
74221639 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
74221679 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
74221719 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
74221759 CCGGATAT
1 CCGGATAT
74221767 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:74225115 original size:3 final size:3
Alignment explanation
Indices: 74225107--74225294 Score: 132
Period size: 3 Copynumber: 63.7 Consensus size: 3
74225097 TAATATTTCA
** *
74225107 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -TT -TT ATT ACC AAT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * ** *
74225153 ATT GTT ACT ATT ACT ATT ATT TTT ATT ACT ATT ATT ACC ACT ATT -TT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * * *
74225200 CGTT ATA ATT ACT ATT ACT ATT ATT TTT ATT ACT ATT ATT ATT ACT
1 -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * *
74225246 ATT TTT GTT ATT ATT ATT ATT ACT ATT -GT ATT ATT ACT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
74225293 AT
1 AT
74225295 ATTTTCTTTC
Statistics
Matches: 140, Mismatches: 41, Indels: 8
0.74 0.22 0.04
Matches are distributed among these distances:
2 7 0.05
3 131 0.94
4 2 0.01
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:74225228 original size:51 final size:51
Alignment explanation
Indices: 74225157--74225290 Score: 198
Period size: 51 Copynumber: 2.6 Consensus size: 51
74225147 ACCAATATTG
74225157 TTACTATTACTATTATTTTTATTACTATTATTACCACTATTTTCGTTATAA
1 TTACTATTACTATTATTTTTATTACTATTATTACCACTATTTTCGTTATAA
** * *
74225208 TTACTATTACTATTATTTTTATTACTATTATTATTACTATTTTTGTTATTA
1 TTACTATTACTATTATTTTTATTACTATTATTACCACTATTTTCGTTATAA
* * *
74225259 TTATTATTACTATT-GTATTATTACTATTATTA
1 TTACTATTACTATTATTTTTATTACTATTATTA
74225291 TTATATTTTC
Statistics
Matches: 76, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
50 16 0.21
51 60 0.79
ACGTcount: A:0.29, C:0.10, G:0.02, T:0.59
Consensus pattern (51 bp):
TTACTATTACTATTATTTTTATTACTATTATTACCACTATTTTCGTTATAA
Found at i:74232981 original size:42 final size:42
Alignment explanation
Indices: 74232895--74232985 Score: 128
Period size: 42 Copynumber: 2.2 Consensus size: 42
74232885 CAAATTAGTG
* ** *
74232895 CCGACGCCATGTCCCAGACATGGTCTTATACGGGACCTCATA
1 CCGATGCCATGTCCCAGACATGGTCTTATACGAAACCACATA
* *
74232937 CCGATGCCATGTCCCAGACATGGTCTTATACGAAATCACTTA
1 CCGATGCCATGTCCCAGACATGGTCTTATACGAAACCACATA
74232979 CCGATGC
1 CCGATGC
74232986 TAAAGCCATA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (42 bp):
CCGATGCCATGTCCCAGACATGGTCTTATACGAAACCACATA
Found at i:74235926 original size:13 final size:13
Alignment explanation
Indices: 74235908--74235934 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
74235898 GCCAAATAGA
74235908 TATCACATACATG
1 TATCACATACATG
74235921 TATCACATACATG
1 TATCACATACATG
74235934 T
1 T
74235935 TTTTCATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.33
Consensus pattern (13 bp):
TATCACATACATG
Found at i:74235965 original size:21 final size:21
Alignment explanation
Indices: 74235939--74235989 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
74235929 ACATGTTTTT
74235939 CATATAACAAATCATACTCAG
1 CATATAACAAATCATACTCAG
* *
74235960 CATATAACATATCATACTTAG
1 CATATAACAAATCATACTCAG
74235981 CATATAACA
1 CATATAACA
74235990 GACTAATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.47, C:0.22, G:0.04, T:0.27
Consensus pattern (21 bp):
CATATAACAAATCATACTCAG
Found at i:74244933 original size:6 final size:6
Alignment explanation
Indices: 74244922--74244961 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
74244912 ACTGTGATGC
*
74244922 ATGTAT ATGTAT ATGTAT ATGTAT ATTTAT ATGTAT ATGT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGT
74244962 TCTGATCTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.53
Consensus pattern (6 bp):
ATGTAT
Found at i:74245188 original size:40 final size:38
Alignment explanation
Indices: 74245137--74245232 Score: 93
Period size: 40 Copynumber: 2.5 Consensus size: 38
74245127 ACGATATTCT
* ** * *
74245137 ATGGTATGTAGGGTTGGATAGGTTGATTTTATCCCTAT
1 ATGGTGTGTAGGGTTGGATAGGTCAATTTTATCCCCAC
* * *
74245175 ATTTGGTGTGTAGGGATGGGTGGGTCAATTTTATCCCCAC
1 A--TGGTGTGTAGGGTTGGATAGGTCAATTTTATCCCCAC
*
74245215 ATGGTGTGTTGGGTTGGA
1 ATGGTGTGTAGGGTTGGA
74245233 CGGAGTTGGC
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
38 15 0.33
40 30 0.67
ACGTcount: A:0.18, C:0.09, G:0.34, T:0.39
Consensus pattern (38 bp):
ATGGTGTGTAGGGTTGGATAGGTCAATTTTATCCCCAC
Found at i:74249287 original size:17 final size:19
Alignment explanation
Indices: 74249265--74249301 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
74249255 TTGGGCTTAT
74249265 TGGG-CCACACGGG-CGTG
1 TGGGCCCACACGGGCCGTG
*
74249282 TGGGCCCACATGGGCCGTG
1 TGGGCCCACACGGGCCGTG
74249301 T
1 T
74249302 TGTGGGCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 4 0.24
18 8 0.47
19 5 0.29
ACGTcount: A:0.11, C:0.30, G:0.43, T:0.16
Consensus pattern (19 bp):
TGGGCCCACACGGGCCGTG
Found at i:74250373 original size:40 final size:39
Alignment explanation
Indices: 74250313--74250404 Score: 123
Period size: 40 Copynumber: 2.4 Consensus size: 39
74250303 AACTCCGTCT
* * *
74250313 AACCCGACACACC-ATATGGGGATAAAATCGACCTACCC
1 AACCCTACACACCAATATGGGGATAAAATCAACCCACCC
* *
74250351 ATCCCTACACACCAAATATGGGGATAAAATCAACCCATCC
1 AACCCTACACACC-AATATGGGGATAAAATCAACCCACCC
74250391 AACCCTACACACCA
1 AACCCTACACACCA
74250405 TAGAGTACCG
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
38 11 0.24
39 1 0.02
40 34 0.74
ACGTcount: A:0.39, C:0.36, G:0.11, T:0.14
Consensus pattern (39 bp):
AACCCTACACACCAATATGGGGATAAAATCAACCCACCC
Found at i:74253308 original size:26 final size:25
Alignment explanation
Indices: 74253252--74253308 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
74253242 AATCTAAAAT
*
74253252 AAATTC-AAAATCTAATTTCATTTA
1 AAATTCTAAAATCTAATTTCACTTA
* *
74253276 AAGTTCTAAAATCTATTTTACACTTA
1 AAATTCTAAAATCTAATTT-CACTTA
74253302 AAATTCT
1 AAATTCT
74253309 TATAACGTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 5 0.19
25 11 0.41
26 11 0.41
ACGTcount: A:0.42, C:0.14, G:0.02, T:0.42
Consensus pattern (25 bp):
AAATTCTAAAATCTAATTTCACTTA
Found at i:74256967 original size:22 final size:22
Alignment explanation
Indices: 74256938--74256989 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
74256928 GGATAGTAAA
*
74256938 CTGCATCTATATCTGATCTATT
1 CTGCATCTATATCAGATCTATT
* * *
74256960 TTGCATCTGTATCAGATCTGTT
1 CTGCATCTATATCAGATCTATT
74256982 CTGCATCT
1 CTGCATCT
74256990 TACCTGAACG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.19, C:0.23, G:0.13, T:0.44
Consensus pattern (22 bp):
CTGCATCTATATCAGATCTATT
Found at i:74259433 original size:17 final size:19
Alignment explanation
Indices: 74259418--74259455 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
74259408 TTTTTTATTA
74259418 ATTATTTGTACATATTATAT
1 ATTATTTGTACATA-TATAT
74259438 ATTATTTGTACATATATA
1 ATTATTTGTACATATATA
74259456 CACTTTCAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.53
Consensus pattern (19 bp):
ATTATTTGTACATATATAT
Found at i:74263451 original size:14 final size:14
Alignment explanation
Indices: 74263432--74263458 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
74263422 AAGATATTCT
74263432 TTTTCTAAATAAAA
1 TTTTCTAAATAAAA
74263446 TTTTCTAAATAAA
1 TTTTCTAAATAAA
74263459 GTTGAACAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.44
Consensus pattern (14 bp):
TTTTCTAAATAAAA
Found at i:74268119 original size:46 final size:46
Alignment explanation
Indices: 74268018--74268106 Score: 142
Period size: 46 Copynumber: 1.9 Consensus size: 46
74268008 TGTAACCCGC
* *
74268018 CCATAAGTGAACTCGGACTCAACTCAACGAGGTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGGTCGGACGCTCACAT
* *
74268064 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGGTCGGACGCTCA
74268107 ACCATCCTAG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGGTCGGACGCTCACAT
Found at i:74268556 original size:30 final size:30
Alignment explanation
Indices: 74268522--74268581 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
74268512 ATTTAATACG
74268522 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
74268552 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
74268582 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:74275622 original size:46 final size:48
Alignment explanation
Indices: 74275500--74275629 Score: 155
Period size: 46 Copynumber: 2.8 Consensus size: 48
74275490 CGTAACCCGC
74275500 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTACAT
* * * *
74275550 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-C-A-TTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTT-ACAT
74275593 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
74275630 TGCTCAACCA
Statistics
Matches: 69, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 1 0.01
45 2 0.03
46 29 0.42
47 29 0.42
48 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (48 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
Found at i:74276086 original size:30 final size:30
Alignment explanation
Indices: 74276052--74276111 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
74276042 ATTTAATACG
74276052 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
74276082 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
74276112 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:74282015 original size:210 final size:210
Alignment explanation
Indices: 74281702--74282168 Score: 711
Period size: 210 Copynumber: 2.2 Consensus size: 210
74281692 ATAAGCCGCA
*
74281702 ACATAGCAGATCTCACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGACAGATCTTATCTCT
1 ACATAGCAGATCTCACCTTCAGATGTTTACACTGAAGCAGATCCAAGATAACAGATCTTATCTCT
74281767 CTGTAGTCGGCGGGGAACAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGC
66 CTGTAGTCGGCGGGGAACAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGC
*
74281832 AAATCTAAGATGATTTGTCGCCTCTATATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTT
131 AAATCTAAGATGATTTGTCGCCTCTATATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTT
74281897 TGATAGAAGGTAGAC
196 TGATAGAAGGTAGAC
* *
74281912 ACATAGCAGGTCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATAACAGATCTTATCTCT
1 ACATAGCAGATCTCACCTTCAGATGTTTACACTGAAGCAGATCCAAGATAACAGATCTTATCTCT
* * *
74281977 CTGTATTCGGCGGGGAGCAGATTGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGC
66 CTGTAGTCGGCGGGGAACAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGC
* * * * *
74282042 AAATCTAAGATGATTTTTCGTCTCTGTATTGTCAGAGAATAGATCGAAGTCTGGCATCTCCACTT
131 AAATCTAAGATGATTTGTCGCCTCTATATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTT
** * * *
74282107 CAAT-GGAGAGCAGAT
196 TGATAGAAG-GTAGAC
** * * *
74282122 ACATAGCAGATCAGACCTTTAGATGATTAGACTGAAGCAAGATCCAA
1 ACATAGCAGATCTCACCTTCAGATGTTTACACTGAAGC-AGATCCAA
74282169 AATGGTTTGG
Statistics
Matches: 231, Mismatches: 24, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
209 3 0.01
210 220 0.95
211 8 0.03
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (210 bp):
ACATAGCAGATCTCACCTTCAGATGTTTACACTGAAGCAGATCCAAGATAACAGATCTTATCTCT
CTGTAGTCGGCGGGGAACAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGC
AAATCTAAGATGATTTGTCGCCTCTATATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTT
TGATAGAAGGTAGAC
Found at i:74288262 original size:18 final size:20
Alignment explanation
Indices: 74288225--74288279 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
74288215 TACAATATTT
*
74288225 TTATTTTAAATTTATGTTT-AA
1 TTATTTTTAA-TT-TGTTTAAA
74288246 TTATTTTT-ATTTGTTTAAA
1 TTATTTTTAATTTGTTTAAA
*
74288265 TTCTTTTTAATTTGT
1 TTATTTTTAATTTGT
74288280 AGGTTTTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 5 0.17
19 11 0.37
20 7 0.23
21 7 0.23
ACGTcount: A:0.25, C:0.02, G:0.05, T:0.67
Consensus pattern (20 bp):
TTATTTTTAATTTGTTTAAA
Found at i:74297546 original size:40 final size:40
Alignment explanation
Indices: 74297491--74297658 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
74297481 TGAATGATAC
* *
74297491 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
74297531 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
74297571 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
74297611 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
74297651 CC-GGCTAA
1 CCGGGCTAA
74297659 ATTTCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:74299129 original size:37 final size:37
Alignment explanation
Indices: 74299040--74299129 Score: 135
Period size: 37 Copynumber: 2.4 Consensus size: 37
74299030 GTGTTACAAA
* * * *
74299040 AACATTCCAATTGCTAATAAGAGCTCATCCACCCGAT
1 AACATACCAATTGCTCATAAGAGCTCAGCCACCCAAT
74299077 AACATACCAATTGCTCATAAGAGCTCAGCCACCCAAT
1 AACATACCAATTGCTCATAAGAGCTCAGCCACCCAAT
*
74299114 AACATGCCAATTGCTC
1 AACATACCAATTGCTC
74299130 TGAAGAGTTA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.36, C:0.31, G:0.11, T:0.22
Consensus pattern (37 bp):
AACATACCAATTGCTCATAAGAGCTCAGCCACCCAAT
Found at i:74302596 original size:29 final size:30
Alignment explanation
Indices: 74302559--74302616 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
74302549 TTTTAATCCT
* *
74302559 TTTTAAAATTTTTTATATATAATTTATTTA
1 TTTTAAAATATTTTAAATATAATTTATTTA
*
74302589 TTTT-AAATATTTTAAATATTATTTATTT
1 TTTTAAAATATTTTAAATATAATTTATTT
74302617 TTACTATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 21 0.84
30 4 0.16
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (30 bp):
TTTTAAAATATTTTAAATATAATTTATTTA
Found at i:74302659 original size:20 final size:19
Alignment explanation
Indices: 74302623--74302660 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
74302613 ATTTTTACTA
*
74302623 TAAACATTATTTATATATG
1 TAAAAATTATTTATATATG
74302642 TAAAAATTATTATATATAT
1 TAAAAATTATT-TATATAT
74302661 TTTTTATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (19 bp):
TAAAAATTATTTATATATG
Found at i:74302667 original size:31 final size:30
Alignment explanation
Indices: 74302632--74302692 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 30
74302622 ATAAACATTA
74302632 TTTATATATGTAAAAATTATTATATATATTT
1 TTTATATATGTAAAAATTATTATAT-TATTT
* ** *
74302663 TTTATTTATGTATTATTTATTATATTATTT
1 TTTATATATGTAAAAATTATTATATTATTT
74302693 ATATTTTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 5 0.19
31 21 0.81
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (30 bp):
TTTATATATGTAAAAATTATTATATTATTT
Found at i:74302690 original size:12 final size:12
Alignment explanation
Indices: 74302664--74302812 Score: 94
Period size: 12 Copynumber: 12.4 Consensus size: 12
74302654 TATATATTTT
*
74302664 TTATTTA-TGTA
1 TTATTTATTATA
74302675 TTATTTATTATA
1 TTATTTATTATA
*
74302687 TTATTTA-TATT
1 TTATTTATTATA
*
74302698 TTA-TTATATATT
1 TTATTTAT-TATA
*
74302710 TTATTATATTTTA
1 TTATT-TATTATA
* *
74302723 TTTATATATTTTA
1 -TTATTTATTATA
* * *
74302736 TTATATATCATT
1 TTATTTATTATA
74302748 TTA-TTATATATA
1 TTATTTAT-TATA
*
74302760 TTATTCATTATA
1 TTATTTATTATA
*
74302772 TTTTTTATTAT-
1 TTATTTATTATA
*
74302783 TATATATATTATA
1 T-TATTTATTATA
74302796 TTATATTATTAT-
1 TTAT-TTATTATA
74302808 TTATT
1 TTATT
74302813 ACTTATTATT
Statistics
Matches: 110, Mismatches: 17, Indels: 22
0.74 0.11 0.15
Matches are distributed among these distances:
10 3 0.03
11 18 0.16
12 62 0.56
13 20 0.18
14 7 0.06
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (12 bp):
TTATTTATTATA
Found at i:74302713 original size:31 final size:30
Alignment explanation
Indices: 74302648--74302822 Score: 124
Period size: 31 Copynumber: 5.4 Consensus size: 30
74302638 TATGTAAAAA
*
74302648 TTATTATATATATTT-TTTATTTATGTAT-TAT
1 TTATTATAT-TATTTATAT-TTTAT-TATATAT
74302679 TTATTATATTATTTATATTTTATTATATATT
1 TTATTATATTATTTATATTTTATTATATA-T
74302710 TTATTATATTTTATTTATATATTTTATTATATA-
1 TTATTATA--TTA-TT-TATATTTTATTATATAT
* * * *
74302743 TCATTTTATTATATATATTATTCATTATATTTT
1 TTATTATATTATTTATATT-TT-ATTATA-TAT
*
74302776 TTATTATTATATATATTATATTATATTAT-TAT
1 TTATTA-TAT-TAT-TTATATTTTATTATATAT
74302808 TTATTACTTATTATT
1 TTATTA--TATTATT
74302823 ATGTATAATT
Statistics
Matches: 119, Mismatches: 10, Indels: 30
0.75 0.06 0.19
Matches are distributed among these distances:
29 9 0.08
30 15 0.13
31 30 0.25
32 12 0.10
33 17 0.14
34 10 0.08
35 20 0.17
36 6 0.05
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.66
Consensus pattern (30 bp):
TTATTATATTATTTATATTTTATTATATAT
Found at i:74302779 original size:85 final size:84
Alignment explanation
Indices: 74302647--74302836 Score: 235
Period size: 85 Copynumber: 2.2 Consensus size: 84
74302637 ATATGTAAAA
* * * *
74302647 ATTATTATATATATTTTTTATTTATGTATTATTTATTATATTATTTATATTTTATTATATATTTT
1 ATTATTATATATATTTTTTA-TTATATATTATTCATTATATTATTTAT-TATTA-TATATATTAT
74302712 ATTATATT-TTATTTATATA-TT
63 ATTATATTATTATTTAT-TACTT
*
74302733 -TTATTATATATCATTTTATTA-TATATATTATTCATTATATTTTTTATTATTATATATATTATA
1 ATTATTATATAT-ATTTT-TTATTATATATTATTCATTATATTATTTATTATTATATATATTATA
74302796 TTATATTATTATTTATTACTT
64 TTATATTATTATTTATTACTT
* *
74302817 ATTATTATGTATAATTTTTA
1 ATTATTATATATATTTTTTA
74302837 AAAATTTTAT
Statistics
Matches: 92, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
83 22 0.24
84 18 0.20
85 44 0.48
86 5 0.05
87 3 0.03
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.65
Consensus pattern (84 bp):
ATTATTATATATATTTTTTATTATATATTATTCATTATATTATTTATTATTATATATATTATATT
ATATTATTATTTATTACTT
Done.