Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 26 of 444
Found at i:6692801 original size:15 final size:15
Alignment explanation
Indices: 6692769--6692825 Score: 62
Period size: 15 Copynumber: 3.9 Consensus size: 15
6692759 AAATAAACTC
**
6692769 AAAATTT-AAAATTT
1 AAAATTTAAAAATAA
6692783 AAAATTTAAAAATAA
1 AAAATTTAAAAATAA
**
6692798 AAAATAAAAAAATAA
1 AAAATTTAAAAATAA
*
6692813 AAAACTTAAAAAT
1 AAAATTTAAAAAT
6692826 TTAATATTTA
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
14 7 0.20
15 28 0.80
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAATTTAAAAATAA
Found at i:6693352 original size:3 final size:3
Alignment explanation
Indices: 6693344--6693374 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
6693334 TAACATTTCG
6693344 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
6693375 CCCTTATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:6697985 original size:22 final size:20
Alignment explanation
Indices: 6697919--6697974 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 20
6697909 AAATTTCAAA
*
6697919 AATTAAACATAATATAATATTT
1 AATTAAA-ATAA-ATATTATTT
*
6697941 AACATAGAAATAAATATTATTT
1 AA-TTA-AAATAAATATTATTT
6697963 AATTAAAATAAA
1 AATTAAAATAAA
6697975 ATAATTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
20 7 0.24
21 2 0.07
22 12 0.41
23 6 0.21
24 2 0.07
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.36
Consensus pattern (20 bp):
AATTAAAATAAATATTATTT
Found at i:6698099 original size:42 final size:43
Alignment explanation
Indices: 6697997--6698222 Score: 366
Period size: 43 Copynumber: 5.3 Consensus size: 43
6697987 TATCATTATT
* * * *
6697997 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGATA
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
6698040 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGT-
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
*
6698082 TTTAGCGGCGTTTGCGAAAAAAGCGACGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
*
6698125 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
* *
6698168 TTTAGCGGCGTTTGCGAAAAAA-CGCCGCTAAAAGTCCTGGTC
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
6698210 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
6698223 TTTTCAAAAA
Statistics
Matches: 173, Mismatches: 9, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
42 72 0.42
43 101 0.58
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.26
Consensus pattern (43 bp):
TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
Found at i:6698104 original size:85 final size:85
Alignment explanation
Indices: 6697996--6698222 Score: 366
Period size: 85 Copynumber: 2.7 Consensus size: 85
6697986 ATATCATTAT
* * * *
6697996 TTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGATATTTAGCGGCGTTTGCGAAAAA
1 TTTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGCGAAAAA
6698061 AGCGCCGCTAAAGGTCATGG
66 AGCGCCGCTAAAGGTCATGG
* *
6698081 TTTTAGCGGCGTTTGCGAAAAAAGCGACGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGAAAAA
1 TTTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGCGAAAAA
6698146 AGCGCCGCTAAAGGTCATGG
66 AGCGCCGCTAAAGGTCATGG
* *
6698166 TCTTTAGCGGCGTTTGCGAAAAAA-CGCCGCTAAAAGTCCTGGTCTTTAGCGGCGTTT
1 T-TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTT
6698223 TTTTCAAAAA
Statistics
Matches: 132, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
85 110 0.83
86 22 0.17
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.26
Consensus pattern (85 bp):
TTTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGCGAAAAA
AGCGCCGCTAAAGGTCATGG
Found at i:6706342 original size:23 final size:22
Alignment explanation
Indices: 6706305--6706350 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
6706295 AAAAAAAATT
* *
6706305 AAAATATTTATAAAAATTGAAAA
1 AAAATATATAAAAAAATT-AAAA
*
6706328 AAAATATATAAAAAAGTTAAAA
1 AAAATATATAAAAAAATTAAAA
6706350 A
1 A
6706351 TTTTAAAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (22 bp):
AAAATATATAAAAAAATTAAAA
Found at i:6708179 original size:13 final size:13
Alignment explanation
Indices: 6708163--6708213 Score: 68
Period size: 13 Copynumber: 3.9 Consensus size: 13
6708153 TTTAAACCAA
*
6708163 ACTTTTCAAAAGT
1 ACTTTTCAAAAGC
*
6708176 ACTTTTTC-ACAGC
1 AC-TTTTCAAAAGC
6708189 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
6708202 ACTTTTCAAAAG
1 ACTTTTCAAAAG
6708214 TATTGCCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
12 5 0.15
13 23 0.70
14 5 0.15
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:6711073 original size:21 final size:21
Alignment explanation
Indices: 6711047--6711087 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
6711037 ATCTGCTCAA
* *
6711047 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
6711068 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
6711088 TCGCTTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:6714933 original size:99 final size:99
Alignment explanation
Indices: 6714762--6714959 Score: 342
Period size: 99 Copynumber: 2.0 Consensus size: 99
6714752 CTTGTTTGGT
* *
6714762 GACGACTGGTTTGTTTGTATTGTGGGAAAGCAGTGTGGTTCAGTTATAAGCATAAGTGGCGTTGC
1 GACGACTGGTTTGTTTGTATTGTGGGAAAGCAGTGTGGTTCAGTTAGAAGCATAAGTGGCATTGC
6714827 ATTGTTGATTGTAATGATAAAATAAGTGAGGGAA
66 ATTGTTGATTGTAATGATAAAATAAGTGAGGGAA
* *
6714861 GACGATTGGTTTGTTTGTATTGTGGGAAAGCAGTGTGGTTCAGTTAGGAGCATAAGTGGCATTGC
1 GACGACTGGTTTGTTTGTATTGTGGGAAAGCAGTGTGGTTCAGTTAGAAGCATAAGTGGCATTGC
* *
6714926 ATTGTTGATTGTCATGATAAAATAAGTGTGGGAA
66 ATTGTTGATTGTAATGATAAAATAAGTGAGGGAA
6714960 TGTGTTGCTT
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
99 93 1.00
ACGTcount: A:0.27, C:0.07, G:0.32, T:0.34
Consensus pattern (99 bp):
GACGACTGGTTTGTTTGTATTGTGGGAAAGCAGTGTGGTTCAGTTAGAAGCATAAGTGGCATTGC
ATTGTTGATTGTAATGATAAAATAAGTGAGGGAA
Found at i:6718290 original size:17 final size:17
Alignment explanation
Indices: 6718268--6718303 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
6718258 TAAAGTTGAA
6718268 TCTAGCAAAATGTACTT
1 TCTAGCAAAATGTACTT
6718285 TCTAGCAAAATGTACTT
1 TCTAGCAAAATGTACTT
6718302 TC
1 TC
6718304 GAGGCCACGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.36
Consensus pattern (17 bp):
TCTAGCAAAATGTACTT
Found at i:6721791 original size:94 final size:95
Alignment explanation
Indices: 6721640--6722089 Score: 430
Period size: 94 Copynumber: 4.8 Consensus size: 95
6721630 ATGAAACCAT
* * * ** ** * *
6721640 AAATCTTATACCTCTGAAGTTATAGTGGGTCAAATTGAATCTACCATA-ATGAGTCTTATCTTCC
1 AAATCCTATACCCCTAAAGTTGCAGTGGGTCGGATTGAATCTACCATAGCTGAGTCTTATCTCCC
* * * *
6721704 TGAAGTTGCAATAGAGTAAGATGAA-CTTAC
66 TAAAGTTGCAGTGGAGCAAGATGAAGC-TAC
* * *
6721734 AAATCCTATACCCCTGAAGTTGCAGTAGG-CTGGATTGAATCTACCATAGCT-ATTCTTATCTCC
1 AAATCCTATACCCCTAAAGTTGCAGTGGGTC-GGATTGAATCTACCATAGCTGAGTCTTATCTCC
*
6721797 CTAAAGTTGCACTGGAGCAAGATGAAGCTAC
65 CTAAAGTTGCAGTGGAGCAAGATGAAGCTAC
* * * *
6721828 AAATCCTATATCCTTGAAA-TTGCAATGGGTCGAATTGAATCTACCATAGC-GAGTCTTATCTCC
1 AAATCCTATACCCCT-AAAGTTGCAGTGGGTCGGATTGAATCTACCATAGCTGAGTCTTATCTCC
* **
6721891 CTAAAGTTGTAGTGGAGCAAGATGAATATAC
65 CTAAAGTTGCAGTGGAGCAAGATGAAGCTAC
* * * *
6721922 AAATCCTGTACCCCTAAAGTTGCAGTGGGTCAGATTGAATCTATCATAG-TGAGTCTTATCTTCC
1 AAATCCTATACCCCTAAAGTTGCAGTGGGTCGGATTGAATCTACCATAGCTGAGTCTTATCTCCC
* * * * **
6721986 TGAATTTGTAGTGGAGTAAGACAAAGCTAC
66 TAAAGTTGCAGTGGAGCAAGATGAAGCTAC
* * * * * * * * *
6722016 AAATCCTATACCCCTAAAGTTGCAATGAGTCGGGTTGAATTTACCATAAC-GAATTTTATGTCCT
1 AAATCCTATACCCCTAAAGTTGCAGTGGGTCGGATTGAATCTACCATAGCTGAGTCTTATCTCCC
6722080 TAAAGTTGCA
66 TAAAGTTGCA
6722090 ATGAAAGGGA
Statistics
Matches: 291, Mismatches: 56, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
93 4 0.01
94 282 0.97
95 5 0.02
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.31
Consensus pattern (95 bp):
AAATCCTATACCCCTAAAGTTGCAGTGGGTCGGATTGAATCTACCATAGCTGAGTCTTATCTCCC
TAAAGTTGCAGTGGAGCAAGATGAAGCTAC
Found at i:6722015 original size:188 final size:188
Alignment explanation
Indices: 6721665--6722091 Score: 493
Period size: 188 Copynumber: 2.3 Consensus size: 188
6721655 GAAGTTATAG
* * * * *
6721665 TGGGTCAAATTGAATCTACCATAATGAGTCTTATCTTCCTGAAGTTGCAATAGAGTAAGATGAAC
1 TGGGTCGAATTGAATCTACCATAACGAGTCTTATCTCCCTAAAGTTGCAATAGAGCAAGATGAAC
* * *
6721730 TTACAAATCCTATACCCCTGAAGTTGCAGTAGGCTGGATTGAATCTACCATAGCTATTCTTATCT
66 TTACAAATCCTATACCCCTAAAGTTGCAGTAGGCTAGATTGAATCTACCATAGCTAGTCTTATCT
** * *
6721795 CCCTAAAGTTGCACTGGAGCAAGATGAAGCTACAAATCCTATATCCTTGAAA-TTGCAA
131 CCCTAAAGTTGCACTGGAGCAAGACAAAGCTACAAATCCTATACCCCT-AAAGTTGCAA
* * * *
6721853 TGGGTCGAATTGAATCTACCATAGCGAGTCTTATCTCCCTAAAGTTGTAGTGGAGCAAGATGAA-
1 TGGGTCGAATTGAATCTACCATAACGAGTCTTATCTCCCTAAAGTTGCAATAGAGCAAGATGAAC
* * *
6721917 TATACAAATCCTGTACCCCTAAAGTTGCAGT-GGGTCAGATTGAATCTATCATAG-TGAGTCTTA
66 T-TACAAATCCTATACCCCTAAAGTTGCAGTAGGCT-AGATTGAATCTACCATAGCT-AGTCTTA
* * * * * *
6721980 TCTTCCTGAATTTGTAGTGGAGTAAGACAAAGCTACAAATCCTATACCCCTAAAGTTGCAA
128 TCTCCCTAAAGTTGCACTGGAGCAAGACAAAGCTACAAATCCTATACCCCTAAAGTTGCAA
* ** * * * * *
6722041 TGAGTCGGGTTGAATTTACCATAACGAATTTTATGTCCTTAAAGTTGCAAT
1 TGGGTCGAATTGAATCTACCATAACGAGTCTTATCTCCCTAAAGTTGCAAT
6722092 GAAAGGGATA
Statistics
Matches: 199, Mismatches: 36, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
187 8 0.04
188 191 0.96
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (188 bp):
TGGGTCGAATTGAATCTACCATAACGAGTCTTATCTCCCTAAAGTTGCAATAGAGCAAGATGAAC
TTACAAATCCTATACCCCTAAAGTTGCAGTAGGCTAGATTGAATCTACCATAGCTAGTCTTATCT
CCCTAAAGTTGCACTGGAGCAAGACAAAGCTACAAATCCTATACCCCTAAAGTTGCAA
Found at i:6722559 original size:7 final size:7
Alignment explanation
Indices: 6722542--6722586 Score: 54
Period size: 7 Copynumber: 6.1 Consensus size: 7
6722532 CTGCTAAACT
6722542 AAACCCTA
1 AAACCC-A
*
6722550 ATACCCA
1 AAACCCA
*
6722557 ATAACCTA
1 A-AACCCA
6722565 AAACCCA
1 AAACCCA
6722572 AAACCCA
1 AAACCCA
6722579 AAACCCA
1 AAACCCA
6722586 A
1 A
6722587 TAGTCCACTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
7 22 0.69
8 10 0.31
ACGTcount: A:0.53, C:0.38, G:0.00, T:0.09
Consensus pattern (7 bp):
AAACCCA
Found at i:6722570 original size:15 final size:15
Alignment explanation
Indices: 6722546--6722588 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
6722536 TAAACTAAAC
*
6722546 CCTAATACCCAATAA
1 CCTAAAACCCAATAA
6722561 CCTAAAACCCAA-AA
1 CCTAAAACCCAATAA
*
6722575 CCCAAAACCCAATA
1 CCTAAAACCCAATA
6722589 GTCCACTATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.51, C:0.37, G:0.00, T:0.12
Consensus pattern (15 bp):
CCTAAAACCCAATAA
Found at i:6728616 original size:28 final size:27
Alignment explanation
Indices: 6728550--6728617 Score: 66
Period size: 27 Copynumber: 2.5 Consensus size: 27
6728540 AAAAAAGAAC
* *
6728550 AAATATTATAAAAATTTATAATAAAAT
1 AAATACTAAAAAAATTTATAATAAAAT
* *
6728577 TAATATTAAAAAAATTT-TAATAAATTAT
1 AAATACTAAAAAAATTTATAATAAA--AT
*
6728605 AAATACTGAAAAA
1 AAATACTAAAAAA
6728618 TCTCACATGC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
26 7 0.21
27 15 0.44
28 12 0.35
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (27 bp):
AAATACTAAAAAAATTTATAATAAAAT
Found at i:6728740 original size:6 final size:6
Alignment explanation
Indices: 6728731--6728760 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
6728721 GTTCGAGTTC
*
6728731 TTCCTT TTCCTT TTCATT TTCCTT TTCCTT
1 TTCCTT TTCCTT TTCCTT TTCCTT TTCCTT
6728761 GAATTTCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.03, C:0.30, G:0.00, T:0.67
Consensus pattern (6 bp):
TTCCTT
Found at i:6729194 original size:30 final size:31
Alignment explanation
Indices: 6729158--6729225 Score: 120
Period size: 30 Copynumber: 2.2 Consensus size: 31
6729148 AATTTTATAA
6729158 ATTTTAAAAAAATCTAAATGAAAAATTTT-T
1 ATTTTAAAAAAATCTAAATGAAAAATTTTCT
6729188 ATTTTAAAAAAATCTAAATGAAAAATTTTCT
1 ATTTTAAAAAAATCTAAATGAAAAATTTTCT
*
6729219 ATATTAA
1 ATTTTAA
6729226 GTGACCGGAT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
30 29 0.81
31 7 0.19
ACGTcount: A:0.53, C:0.04, G:0.03, T:0.40
Consensus pattern (31 bp):
ATTTTAAAAAAATCTAAATGAAAAATTTTCT
Found at i:6731919 original size:17 final size:17
Alignment explanation
Indices: 6731897--6731944 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
6731887 GATAAAACAA
*
6731897 TTTATGAAAACAATTAT
1 TTTATGAAAACAATCAT
* *
6731914 TTTATGCAATCAATCAT
1 TTTATGAAAACAATCAT
*
6731931 TTTAGAGAAAACAA
1 TTTA-TGAAAACAA
6731945 CTTAGGTTTT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
17 18 0.75
18 6 0.25
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.35
Consensus pattern (17 bp):
TTTATGAAAACAATCAT
Found at i:6744115 original size:43 final size:44
Alignment explanation
Indices: 6743995--6744122 Score: 150
Period size: 43 Copynumber: 2.9 Consensus size: 44
6743985 GTACTATAGG
* * * *
6743995 TACCTATACCATAGCCTGAAGCCAACTCAAGGTAACTTCTCTCGGAG
1 TACCTATACCATGGCCCGAAGCCAACTCAAGGTAA---CTCTCGAAA
*
6744042 TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTC-CGAAA
1 TACCTATACCATGGCCCGAAGCCAACTCAAGGTAACTCTCGAAA
* * *
6744085 TGCCTATACCATGGCCCGAAACCAACTCAAGGCAACTC
1 TACCTATACCATGGCCCGAAGCCAACTCAAGGTAACTC
6744123 GCACCCGAAG
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
43 37 0.51
44 3 0.04
47 32 0.44
ACGTcount: A:0.33, C:0.32, G:0.16, T:0.19
Consensus pattern (44 bp):
TACCTATACCATGGCCCGAAGCCAACTCAAGGTAACTCTCGAAA
Found at i:6749182 original size:18 final size:18
Alignment explanation
Indices: 6749136--6749209 Score: 57
Period size: 18 Copynumber: 4.1 Consensus size: 18
6749126 TTATATTATA
*
6749136 TATTATA-AAATTA-TTT
1 TATTATATATATTATTTT
*
6749152 TATTA-AAAGTATTATTTT
1 TATTATATA-TATTATTTT
6749170 TATTATATATATTATTATT
1 TATTATATATATTATT-TT
6749189 GT-TTATTATATATATATTTT
1 -TATTA-TATATAT-TATTTT
6749209 T
1 T
6749210 TGTCAAATTA
Statistics
Matches: 48, Mismatches: 2, Indels: 13
0.76 0.03 0.21
Matches are distributed among these distances:
15 1 0.02
16 6 0.12
17 4 0.08
18 15 0.31
19 8 0.17
20 10 0.21
21 4 0.08
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (18 bp):
TATTATATATATTATTTT
Found at i:6749200 original size:24 final size:21
Alignment explanation
Indices: 6749161--6749210 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 21
6749151 TTATTAAAAG
6749161 TATTATTTTTATTATATATAT
1 TATTATTTTTATTATATATAT
6749182 TATTATTGTTTATTATATATA-
1 TATTATT-TTTATTATATATAT
6749203 TATT-TTTT
1 TATTATTTT
6749211 GTCAAATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 2 0.07
20 2 0.07
21 11 0.39
22 13 0.46
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (21 bp):
TATTATTTTTATTATATATAT
Found at i:6749212 original size:22 final size:22
Alignment explanation
Indices: 6749161--6749203 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
6749151 TTATTAAAAG
6749161 TATTATT-TTTATTATATATAT
1 TATTATTGTTTATTATATATAT
6749182 TATTATTGTTTATTATATATAT
1 TATTATTGTTTATTATATATAT
6749204 ATTTTTTGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (22 bp):
TATTATTGTTTATTATATATAT
Found at i:6749288 original size:30 final size:31
Alignment explanation
Indices: 6749216--6749288 Score: 82
Period size: 30 Copynumber: 2.4 Consensus size: 31
6749206 TTTTTGTCAA
* *
6749216 ATTATTATTATTTTACATCATTTTTTATATT
1 ATTACTATTATTTTACATCATATTTTATATT
6749247 ATTACTA-TATTTTCACAT-ATATTTTATA-T
1 ATTACTATTATTTT-ACATCATATTTTATATT
6749276 -TTACTAGTTATTT
1 ATTACTA-TTATTT
6749289 ATATATATTG
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
28 6 0.16
29 1 0.03
30 20 0.54
31 10 0.27
ACGTcount: A:0.30, C:0.08, G:0.01, T:0.60
Consensus pattern (31 bp):
ATTACTATTATTTTACATCATATTTTATATT
Found at i:6749968 original size:2 final size:2
Alignment explanation
Indices: 6749961--6749988 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6749951 ATACATGCTA
6749961 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6749989 CTTTGTATGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6751993 original size:21 final size:20
Alignment explanation
Indices: 6751965--6752003 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
6751955 CAAAACTTGT
6751965 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
6751985 ATAATCTATTATCAAACAT
1 ATAA-CTATCATCAAACAT
6752004 CAAAATACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:6756127 original size:17 final size:17
Alignment explanation
Indices: 6756105--6756139 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
6756095 TTTTGCATAT
6756105 AGCCGCCATCAATACTG
1 AGCCGCCATCAATACTG
6756122 AGCCGCCATCAATACTG
1 AGCCGCCATCAATACTG
6756139 A
1 A
6756140 ACCCATACCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.34, G:0.17, T:0.17
Consensus pattern (17 bp):
AGCCGCCATCAATACTG
Found at i:6756802 original size:23 final size:23
Alignment explanation
Indices: 6756775--6756824 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
6756765 ATATATTATT
6756775 TGTTATCTTTATGAATTATCAAA
1 TGTTATCTTTATGAATTATCAAA
6756798 TGTTATCTTTATGAATTATCAAA
1 TGTTATCTTTATGAATTATCAAA
6756821 TGTT
1 TGTT
6756825 CTTAAAAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.32, C:0.08, G:0.10, T:0.50
Consensus pattern (23 bp):
TGTTATCTTTATGAATTATCAAA
Found at i:6760083 original size:31 final size:29
Alignment explanation
Indices: 6760014--6760085 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
6760004 ACAAAATAAT
**
6760014 AACATAAGTGACTAAAACGTAACATTTCA
1 AACATAAGTGACTAAAACGTAACATGGCA
*
6760043 AACATAAGTGACTAAAATGTAACATCAGGCA
1 AACATAAGTGACTAAAACGTAACAT--GGCA
*
6760074 AACAAAAGTGAC
1 AACATAAGTGAC
6760086 AATTTTTATA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
29 24 0.65
31 13 0.35
ACGTcount: A:0.50, C:0.17, G:0.14, T:0.19
Consensus pattern (29 bp):
AACATAAGTGACTAAAACGTAACATGGCA
Found at i:6761453 original size:17 final size:18
Alignment explanation
Indices: 6761416--6761453 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
6761406 AGTGATCACT
6761416 ATTAATTAGAGTCAAACCC
1 ATTAATTAGAGTC-AACCC
6761435 ATTAATTAGAGTC-ACCC
1 ATTAATTAGAGTCAACCC
6761452 AT
1 AT
6761454 GATAGAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.32
19 13 0.68
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (18 bp):
ATTAATTAGAGTCAACCC
Found at i:6767326 original size:2 final size:2
Alignment explanation
Indices: 6767319--6767351 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
6767309 TCATGACATG
6767319 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6767352 GACTAGTTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6769126 original size:23 final size:24
Alignment explanation
Indices: 6769098--6769145 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
6769088 TGTAATGTTT
6769098 TATATTA-TTTATATATTATATTA
1 TATATTATTTTATATATTATATTA
*
6769121 TATATTATTTTTATATATTGTATTA
1 TATATTA-TTTTATATATTATATTA
6769146 AAAAATATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.32
25 15 0.68
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.62
Consensus pattern (24 bp):
TATATTATTTTATATATTATATTA
Found at i:6769144 original size:15 final size:13
Alignment explanation
Indices: 6769100--6769139 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
6769090 TAATGTTTTA
6769100 TATTATTTATATAT
1 TATT-TTTATATAT
*
6769114 TA-TATTATATAT
1 TATTTTTATATAT
6769126 TATTTTTATATAT
1 TATTTTTATATAT
6769139 T
1 T
6769140 GTATTAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 10 0.43
13 11 0.48
14 2 0.09
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
TATTTTTATATAT
Found at i:6769154 original size:25 final size:25
Alignment explanation
Indices: 6769099--6769155 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
6769089 GTAATGTTTT
* *
6769099 ATATTATTTATATATTATATTATATA
1 ATATT-TTTATATATTATATTAAAAA
* *
6769125 TTATTTTTATATATTGTATTAAAAA
1 ATATTTTTATATATTATATTAAAAA
6769150 ATATTT
1 ATATTT
6769156 ATTCCTTTCC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 22 0.85
26 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (25 bp):
ATATTTTTATATATTATATTAAAAA
Found at i:6777743 original size:19 final size:19
Alignment explanation
Indices: 6777705--6777740 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
6777695 TATGTAAATG
6777705 AATTTTACTATAAAATTTC
1 AATTTTACTATAAAATTTC
6777724 AATTTTACTA-AAAATTT
1 AATTTTACTATAAAATTT
6777741 TCACCAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (19 bp):
AATTTTACTATAAAATTTC
Found at i:6780595 original size:136 final size:136
Alignment explanation
Indices: 6780351--6780635 Score: 534
Period size: 136 Copynumber: 2.1 Consensus size: 136
6780341 TATTGGGCCT
**
6780351 AAGCCCATTCAGGTAACAGTGGTACTAGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTAGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
6780416 AGCCCCTTATTCAAATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAAATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
6780481 ATATGC
131 ATATGC
*
6780487 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTAGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
6780552 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAAATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
6780617 ATATGC
131 ATATGC
6780623 AAGCCCATTTGGG
1 AAGCCCATTTGGG
6780636 GAGACTACTC
Statistics
Matches: 145, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
136 145 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTAGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAAATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:6782456 original size:26 final size:26
Alignment explanation
Indices: 6782420--6782763 Score: 607
Period size: 26 Copynumber: 13.2 Consensus size: 26
6782410 CATGATATTC
*
6782420 TTATCATGAAACATTTATCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
6782446 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
6782472 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
6782498 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
6782524 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
6782550 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
6782576 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
6782602 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
6782628 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
6782654 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
6782680 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
6782706 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
6782732 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
6782758 TTATCA
1 TTATCA
6782764 ATTTGTATCA
Statistics
Matches: 303, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 303 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:6784481 original size:27 final size:27
Alignment explanation
Indices: 6784448--6784499 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
6784438 TTAATCCTTT
*
6784448 TTATATAT-TTAATTTATTTTAAATACC
1 TTATATATCTTAATTT-TTTAAAATACC
*
6784475 TTATATATCTTTATTTTTTAAAATA
1 TTATATATCTTAATTTTTTAAAATA
6784500 ATATATTAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 16 0.73
28 6 0.27
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.58
Consensus pattern (27 bp):
TTATATATCTTAATTTTTTAAAATACC
Found at i:6784561 original size:21 final size:20
Alignment explanation
Indices: 6784510--6784562 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
6784500 ATATATTAGT
6784510 TATATATTATTTTTATTATC
1 TATATATTATTTTTATTATC
*
6784530 CATCATATTATTTTTATTATTC
1 TAT-ATATTATTTTTATTA-TC
*
6784552 TATATTTTATT
1 TATATATTATT
6784563 CTATATTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 2 0.07
21 22 0.79
22 4 0.14
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (20 bp):
TATATATTATTTTTATTATC
Found at i:6784583 original size:14 final size:12
Alignment explanation
Indices: 6784546--6784597 Score: 61
Period size: 12 Copynumber: 4.3 Consensus size: 12
6784536 ATTATTTTTA
6784546 TTATTCTATATT
1 TTATTCTATATT
6784558 TTATTCTATATT
1 TTATTCTATATT
*
6784570 TTATTAC-ATATA
1 TTATT-CTATATT
* *
6784582 TTATTTTATTTT
1 TTATTCTATATT
6784594 TTAT
1 TTAT
6784598 AAATTATGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
12 33 0.97
13 1 0.03
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (12 bp):
TTATTCTATATT
Found at i:6784723 original size:27 final size:29
Alignment explanation
Indices: 6784678--6784751 Score: 82
Period size: 28 Copynumber: 2.6 Consensus size: 29
6784668 ATATTATCCT
* *
6784678 TATTTATATGATAGTATTTTTATTTC-ATCA
1 TATTT-TATTATA-TATTTTTATTCCAATCA
6784708 TATTTTATT-TATA-TTTTATTCCATATCA
1 TATTTTATTATATATTTTTATTCCA-ATCA
6784736 TATTTTATTATATATT
1 TATTTTATTATATATT
6784752 ATTCCTTATA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
26 8 0.21
27 2 0.05
28 15 0.39
29 7 0.18
30 6 0.16
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.61
Consensus pattern (29 bp):
TATTTTATTATATATTTTTATTCCAATCA
Found at i:6784768 original size:27 final size:28
Alignment explanation
Indices: 6784704--6784756 Score: 90
Period size: 27 Copynumber: 1.9 Consensus size: 28
6784694 TTTTTATTTC
*
6784704 ATCATATTTTATTTATATTTTATTCCAT
1 ATCATATTTTATTTATATATTATTCCAT
6784732 ATCATATTTTA-TTATATATTATTCC
1 ATCATATTTTATTTATATATTATTCC
6784757 TTATAGTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 13 0.54
28 11 0.46
ACGTcount: A:0.30, C:0.11, G:0.00, T:0.58
Consensus pattern (28 bp):
ATCATATTTTATTTATATATTATTCCAT
Found at i:6784824 original size:21 final size:20
Alignment explanation
Indices: 6784800--6784851 Score: 61
Period size: 21 Copynumber: 2.6 Consensus size: 20
6784790 TATATACATT
6784800 TTATTATATTTTTTATATTA
1 TTATTATATTTTTTATATTA
* **
6784820 CTTATCATATGGTTTATATTA
1 -TTATTATATTTTTTATATTA
6784841 TTA-TATATTTT
1 TTATTATATTTT
6784852 GTTTACAAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
19 5 0.20
20 3 0.12
21 17 0.68
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (20 bp):
TTATTATATTTTTTATATTA
Found at i:6785193 original size:17 final size:18
Alignment explanation
Indices: 6785180--6785250 Score: 76
Period size: 19 Copynumber: 3.9 Consensus size: 18
6785170 TAATCTTCAA
6785180 TGATATGCAATCTTAGATG
1 TGATATGCAATCTTAGA-G
6785199 TGATATGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
6785216 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
6785235 TGAT-TGCAATCTTAGA
1 TGATATGCAATCTTAGA
6785251 TATGATACAA
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
16 2 0.04
17 13 0.28
18 11 0.24
19 18 0.39
20 2 0.04
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (18 bp):
TGATATGCAATCTTAGAG
Found at i:6785246 original size:18 final size:18
Alignment explanation
Indices: 6785179--6785292 Score: 151
Period size: 18 Copynumber: 6.3 Consensus size: 18
6785169 ATAATCTTCA
6785179 ATGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
*
6785198 GTGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
*
6785217 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
6785234 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
* *
6785252 ATGA-TACAATCTTAAAT
1 ATGATTGCAATCTTAGAT
*
6785269 ATGACTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
6785287 ATGATT
1 ATGATT
6785293 TTGTAATCTT
Statistics
Matches: 84, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
17 31 0.37
18 32 0.38
19 21 0.25
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (18 bp):
ATGATTGCAATCTTAGAT
Found at i:6785249 original size:35 final size:35
Alignment explanation
Indices: 6785187--6785291 Score: 174
Period size: 35 Copynumber: 3.0 Consensus size: 35
6785177 CAATGATATG
*
6785187 CAATCTTAGATGTGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
6785223 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
* *
6785258 CAATCTTAAATATGACTGCAATCTTAGATATGAT
1 CAATCTTAGATATGATTGCAATCTTAGATATGAT
6785292 TTTGTAATCT
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
35 51 0.77
36 15 0.23
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.36
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:6785263 original size:17 final size:17
Alignment explanation
Indices: 6785187--6785291 Score: 138
Period size: 17 Copynumber: 5.9 Consensus size: 17
6785177 CAATGATATG
*
6785187 CAATCTTAGATGTGATA
1 CAATCTTAGATATGATA
6785204 TGCAATCTTAGATATGATA
1 --CAATCTTAGATATGATA
*
6785223 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
6785241 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
* *
6785258 CAATCTTAAATATGACTG
1 CAATCTTAGATATGA-TA
6785276 CAATCTTAGATATGAT
1 CAATCTTAGATATGAT
6785292 TTTGTAATCT
Statistics
Matches: 78, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
17 31 0.40
18 31 0.40
19 16 0.21
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:6785818 original size:17 final size:17
Alignment explanation
Indices: 6785753--6785818 Score: 59
Period size: 17 Copynumber: 3.9 Consensus size: 17
6785743 TCTAAACCAA
*
6785753 TATATTTTATATTTT-T
1 TATATATTATATTTTAT
6785769 TATATAATTATTATTCTTA-
1 TATAT-ATTA-TATT-TTAT
*
6785788 TAAATA-TAT-TTTTAT
1 TATATATTATATTTTAT
6785803 TATATATTATATTTTA
1 TATATATTATATTTTA
6785819 AATTTATTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 13
0.71 0.05 0.23
Matches are distributed among these distances:
14 3 0.08
15 7 0.17
16 9 0.22
17 10 0.25
18 5 0.12
19 6 0.15
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
TATATATTATATTTTAT
Found at i:6785828 original size:26 final size:25
Alignment explanation
Indices: 6785795--6785843 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
6785785 TTATAAATAT
* *
6785795 ATTTTTATTATATATTATATTTTAA
1 ATTTTTATTAAATATCATATTTTAA
6785820 ATTTATTATTAAATATCATATTTT
1 ATTT-TTATTAAATATCATATTTT
6785844 TTATATGCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (25 bp):
ATTTTTATTAAATATCATATTTTAA
Found at i:6789104 original size:20 final size:20
Alignment explanation
Indices: 6789066--6789104 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
6789056 CCACATATGT
* *
6789066 AATCTATTTTCTTGTAAAGA
1 AATCTATTTTCTAGAAAAGA
*
6789086 AATCTGTTTTCTAGAAAAG
1 AATCTATTTTCTAGAAAAG
6789105 TTATTCTAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.41
Consensus pattern (20 bp):
AATCTATTTTCTAGAAAAGA
Found at i:6791775 original size:8 final size:8
Alignment explanation
Indices: 6791747--6791810 Score: 50
Period size: 8 Copynumber: 8.6 Consensus size: 8
6791737 TCTATTTCAA
6791747 AAAAAAAG
1 AAAAAAAG
6791755 AAAAACAAG
1 AAAAA-AAG
*
6791764 --AAAAGG
1 AAAAAAAG
6791770 AAAAAAAG
1 AAAAAAAG
6791778 --AAAAAG
1 AAAAAAAG
*
6791784 AAAAATA-
1 AAAAAAAG
*
6791791 AAAAATAG
1 AAAAAAAG
6791799 -AAAAAAG
1 AAAAAAAG
6791806 AAAAA
1 AAAAA
6791811 CAATGGAGAG
Statistics
Matches: 45, Mismatches: 4, Indels: 14
0.71 0.06 0.22
Matches are distributed among these distances:
6 8 0.18
7 16 0.36
8 18 0.40
9 3 0.07
ACGTcount: A:0.83, C:0.02, G:0.12, T:0.03
Consensus pattern (8 bp):
AAAAAAAG
Found at i:6791800 original size:15 final size:14
Alignment explanation
Indices: 6791745--6791810 Score: 75
Period size: 14 Copynumber: 4.7 Consensus size: 14
6791735 CTTCTATTTC
6791745 AAAA-AAAAAGAAA
1 AAAAGAAAAAGAAA
*
6791758 AACAAGAAAAGGAAA
1 AA-AAGAAAAAGAAA
6791773 AAAAGAAAAAGAAA
1 AAAAGAAAAAGAAA
6791787 AATAA-AAAATAG-AA
1 AA-AAGAAAA-AGAAA
6791801 AAAAGAAAAA
1 AAAAGAAAAA
6791811 CAATGGAGAG
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
13 5 0.11
14 27 0.59
15 14 0.30
ACGTcount: A:0.83, C:0.02, G:0.12, T:0.03
Consensus pattern (14 bp):
AAAAGAAAAAGAAA
Found at i:6792925 original size:119 final size:119
Alignment explanation
Indices: 6792734--6793834 Score: 1916
Period size: 119 Copynumber: 9.3 Consensus size: 119
6792724 CTTCAGACAA
6792734 TTAGACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACAT
1 TTAGACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACAT
*
6792799 AGCAGATTTGACTCTCAGATGTTCTCAGATATAGCAGATCTAACCTTTAGATGT
66 AGCAGATTTGACTCTCAGATGTTCTCAGATATAGCAGATCTAACCTTCAGATGT
*
6792853 TTAGACTGAAGCAGATCCAAGATGATCTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACAT
1 TTAGACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACAT
* * *
6792918 AGCAGATTCGACTCTCAGACGTTCTCAGATATAGTAGATCTAACCTTCAGATGT
66 AGCAGATTTGACTCTCAGATGTTCTCAGATATAGCAGATCTAACCTTCAGATGT
* * *
6792972 TTATACTGAAGCAGATCCAAGATGATATGATATTCTTGTGTTTACAAGGAACAAATCGAGGACAT
1 TTAGACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACAT
* *
6793037 AGCAGATTTGACTCTTAGACGTTCTCAGATATAGCAGATCTAACCTTCAGATGT
66 AGCAGATTTGACTCTCAGATGTTCTCAGATATAGCAGATCTAACCTTCAGATGT
* * *
6793091 TTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATAGAGGACAT
1 TTAGACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACAT
* *
6793156 AGCAGATTTGGCTCTCAGATGTTCTCAGATATAGCAGATCTAACCTTCAAATGT
66 AGCAGATTTGACTCTCAGATGTTCTCAGATATAGCAGATCTAACCTTCAGATGT
*
6793210 TTAGACTGAAGCAGATCCAAGATGATTTGGTATTCATGTGTTTACAAGGAACAAATCGAGGACAT
1 TTAGACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACAT
*
6793275 AGCAGATTTGACTCTCAGATGTTCTCAGATATAACAGATCTAACCTTCAGATGT
66 AGCAGATTTGACTCTCAGATGTTCTCAGATATAGCAGATCTAACCTTCAGATGT
6793329 TTAGACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACAT
1 TTAGACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACAT
* *
6793394 AGCAGATTTGACTCTCAGATTTTCTCAGATATAGCAGATCTAGCCTTCAGATGT
66 AGCAGATTTGACTCTCAGATGTTCTCAGATATAGCAGATCTAACCTTCAGATGT
* * * * *
6793448 TTAGATTGAAGCAGATTCAAGATGATTTGATATTCTTGTGTTGACAAGAAACAAATCGAGGACAT
1 TTAGACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACAT
* *
6793513 AGCAGATTTGGCTCTTAGATGTTCTCAGATATAGCAGATCTAACCTTCAGATGT
66 AGCAGATTTGACTCTCAGATGTTCTCAGATATAGCAGATCTAACCTTCAGATGT
6793567 TTAGACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACAT
1 TTAGACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACAT
* *
6793632 AGTAGATTTGGCTCTCAGATGTTCTCAGATATAGCAGATCTAACCTGT-AGATGT
66 AGCAGATTTGACTCTCAGATGTTCTCAGATATAGCAGATCTAACCT-TCAGATGT
6793686 TTAGACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACAT
1 TTAGACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACAT
*
6793751 AGCAGATTTGACTCTCAGATGTTCTCAGATATAGCAGATCTAGCCTTCAGATGT
66 AGCAGATTTGACTCTCAGATGTTCTCAGATATAGCAGATCTAACCTTCAGATGT
*
6793805 TTATACTGAAGCAGATCCAAGATGATTTGG
1 TTAGACTGAAGCAGATCCAAGATGATTTGG
6793835 AATTATTGCG
Statistics
Matches: 930, Mismatches: 50, Indels: 4
0.95 0.05 0.00
Matches are distributed among these distances:
118 1 0.00
119 928 1.00
120 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (119 bp):
TTAGACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACAT
AGCAGATTTGACTCTCAGATGTTCTCAGATATAGCAGATCTAACCTTCAGATGT
Found at i:6794501 original size:17 final size:18
Alignment explanation
Indices: 6794488--6794593 Score: 80
Period size: 17 Copynumber: 5.9 Consensus size: 18
6794478 TAATCTTCAA
6794488 TGATATGCAATCTTAGATG
1 TGATATGCAATCTTAGA-G
6794507 TGATATGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
6794524 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
*
6794543 TGAT-TGCAATATTAGA-
1 TGATATGCAATCTTAGAG
* *
6794559 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
6794578 TGAT-TGCAATCTTAGA
1 TGATATGCAATCTTAGA
6794594 TATGATACAA
Statistics
Matches: 72, Mismatches: 6, Indels: 19
0.74 0.06 0.20
Matches are distributed among these distances:
15 2 0.03
16 3 0.04
17 23 0.32
18 21 0.29
19 19 0.26
20 4 0.06
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (18 bp):
TGATATGCAATCTTAGAG
Found at i:6794527 original size:14 final size:15
Alignment explanation
Indices: 6794508--6794668 Score: 90
Period size: 18 Copynumber: 9.5 Consensus size: 15
6794498 TCTTAGATGT
6794508 GATATG-CAATCTTA
1 GATATGACAATCTTA
6794522 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
*
6794539 GATATGATTGCAATATTA
1 GATATGA---CAATCTTA
6794557 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
6794574 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
6794592 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
* * *
6794609 AATATGATTGTAATATTA
1 GATATGA---CAATCTTA
6794627 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
*
6794644 AATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
6794662 GATATGA
1 GATATGA
6794669 TAAACAATCT
Statistics
Matches: 116, Mismatches: 10, Indels: 38
0.71 0.06 0.23
Matches are distributed among these distances:
14 6 0.05
15 4 0.03
17 51 0.44
18 52 0.45
20 3 0.03
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.37
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:6794558 original size:35 final size:35
Alignment explanation
Indices: 6794495--6794682 Score: 295
Period size: 35 Copynumber: 5.3 Consensus size: 35
6794485 CAATGATATG
*
6794495 CAATCTTAGATGTGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
*
6794531 CAATCTTAGATATGATTGCAATATTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
6794566 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
* * *
6794601 CAATCTTAAATATGATTGTAATATTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
*
6794636 CAATCTTAAATATGATTGCAATCTTAGATATGATAAA
1 CAATCTTAGATATGATTGCAATCTTAGATATGAT--A
6794673 CAATCTTAGA
1 CAATCTTAGA
6794683 AGATATGATT
Statistics
Matches: 141, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
35 116 0.82
36 15 0.11
37 10 0.07
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:6795224 original size:17 final size:17
Alignment explanation
Indices: 6795159--6795224 Score: 59
Period size: 17 Copynumber: 3.9 Consensus size: 17
6795149 TCTAAACCAA
*
6795159 TATATTTTATATTTT-T
1 TATATATTATATTTTAT
6795175 TATATAATTATTATTCTTA-
1 TATAT-ATTA-TATT-TTAT
*
6795194 TAAATA-TAT-TTTTAT
1 TATATATTATATTTTAT
6795209 TATATATTATATTTTA
1 TATATATTATATTTTA
6795225 AATTTATTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 13
0.71 0.05 0.23
Matches are distributed among these distances:
14 3 0.08
15 7 0.17
16 9 0.22
17 10 0.25
18 5 0.12
19 6 0.15
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
TATATATTATATTTTAT
Found at i:6795248 original size:26 final size:25
Alignment explanation
Indices: 6795201--6795249 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
6795191 TTATAAATAT
* * *
6795201 ATTTTTATTATATATTATATTTTAA
1 ATTTTTATTAAATATCACATTTTAA
6795226 ATTTATTATTAAATATCACATTTT
1 ATTT-TTATTAAATATCACATTTT
6795250 TTTTATATGC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (25 bp):
ATTTTTATTAAATATCACATTTTAA
Found at i:6796130 original size:41 final size:41
Alignment explanation
Indices: 6796085--6796274 Score: 290
Period size: 41 Copynumber: 4.6 Consensus size: 41
6796075 AACTGAACAA
*
6796085 TAGCGGCGCTTTTGCAAAAACGCCGCTATAGATCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
* *
6796126 TAGCGGCACTTTTGGAAAAACGCCGCTATAGATTGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
* *
6796167 TAGCGGCGCTTCTGGAAAAACGCCGCTATAGATCGAGGTTG
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
* * * *
6796208 TAGCAGCGCTTTTGGACAAACGCCGCTATTGATCGAGCTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
*
6796249 TAGCGGCGCTTTTTGAAAAACGCCGC
1 TAGCGGCGCTTTTGGAAAAACGCCGC
6796275 AAAAAAGTAA
Statistics
Matches: 133, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 133 1.00
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
Found at i:6796829 original size:7 final size:7
Alignment explanation
Indices: 6796794--6796845 Score: 52
Period size: 7 Copynumber: 7.4 Consensus size: 7
6796784 AAATATCTAA
6796794 TTATGGT
1 TTATGGT
6796801 TTAATGG-
1 TT-ATGGT
*
6796808 TTAGGGT
1 TTATGGT
* *
6796815 TAAGGGT
1 TTATGGT
6796822 TTATGGT
1 TTATGGT
*
6796829 TTATGTT
1 TTATGGT
6796836 TTATGGT
1 TTATGGT
6796843 TTA
1 TTA
6796846 AAGTTGAGGG
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
6 3 0.08
7 30 0.81
8 4 0.11
ACGTcount: A:0.19, C:0.00, G:0.29, T:0.52
Consensus pattern (7 bp):
TTATGGT
Found at i:6796978 original size:43 final size:42
Alignment explanation
Indices: 6796864--6796994 Score: 127
Period size: 43 Copynumber: 3.1 Consensus size: 42
6796854 GGGATAGAGG
* * * *
6796864 TTATGATATAATGTTTATTATTTTGGGGTTTAGGATTTATGAT
1 TTATGATATAATGTTTATTGTTTT-TGGTTTAGGGTTTAGGAT
* * * * *** *
6796907 TTAAGATTTAAGGTTTAATGTCCATGGTTTAAGGGTTTAGGGT
1 TTATGATATAATGTTTATTGTTTTTGGTTT-AGGGTTTAGGAT
*
6796950 TTATGATATAATGTTTATTGTTTTTGGTTTAGGGTTTATGAT
1 TTATGATATAATGTTTATTGTTTTTGGTTTAGGGTTTAGGAT
6796992 TTA
1 TTA
6796995 GAGTTTATGG
Statistics
Matches: 66, Mismatches: 21, Indels: 3
0.73 0.23 0.03
Matches are distributed among these distances:
42 18 0.27
43 48 0.73
ACGTcount: A:0.24, C:0.02, G:0.23, T:0.51
Consensus pattern (42 bp):
TTATGATATAATGTTTATTGTTTTTGGTTTAGGGTTTAGGAT
Found at i:6796980 original size:35 final size:35
Alignment explanation
Indices: 6796940--6797009 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
6796930 ATGGTTTAAG
*
6796940 GGTTTAGGGTTTATGATATA-ATGTTTATTGTTTTT
1 GGTTTAGGGTTTATGATATAGA-GTTTATGGTTTTT
*
6796975 GGTTTAGGGTTTATGATTTAGAGTTTATGGTTTTT
1 GGTTTAGGGTTTATGATATAGAGTTTATGGTTTTT
6797010 TATTTTACGG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
35 31 0.97
36 1 0.03
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.56
Consensus pattern (35 bp):
GGTTTAGGGTTTATGATATAGAGTTTATGGTTTTT
Found at i:6796986 original size:14 final size:14
Alignment explanation
Indices: 6796969--6797007 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
6796959 AATGTTTATT
* *
6796969 GTTTTTGGTTTAGG
1 GTTTATGGTTTAGA
*
6796983 GTTTATGATTTAGA
1 GTTTATGGTTTAGA
6796997 GTTTATGGTTT
1 GTTTATGGTTT
6797008 TTTATTTTAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.28, T:0.56
Consensus pattern (14 bp):
GTTTATGGTTTAGA
Found at i:6797441 original size:17 final size:18
Alignment explanation
Indices: 6797419--6797455 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
6797409 AATATTTATT
6797419 TTAATATA-TTAAAATTA
1 TTAATATAGTTAAAATTA
*
6797436 TTAATATAGTTTAAATTA
1 TTAATATAGTTAAAATTA
6797454 TT
1 TT
6797456 TAAGAGATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (18 bp):
TTAATATAGTTAAAATTA
Found at i:6797458 original size:19 final size:18
Alignment explanation
Indices: 6797418--6797458 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
6797408 TAATATTTAT
6797418 TTTAATATATTAAAATTA
1 TTTAATATATTAAAATTA
*
6797436 -TTAATATAGTTTAAATTA
1 TTTAATATA-TTAAAATTA
6797454 TTTAA
1 TTTAA
6797459 GAGATAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 8 0.40
18 8 0.40
19 4 0.20
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (18 bp):
TTTAATATATTAAAATTA
Found at i:6801957 original size:31 final size:31
Alignment explanation
Indices: 6801919--6801991 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 31
6801909 TTGCTGTATT
6801919 TTATTTATATTTATATTT-AATCTA-ATTTTTA
1 TTATTTAT-TTTAT-TTTGAATCTATATTTTTA
*
6801950 TTATTTATTTTAGTTTTGATTCTATATTTTTA
1 TTATTTATTTTA-TTTTGAATCTATATTTTTA
6801982 TT-TTTATTTT
1 TTATTTATTTT
6801992 TATTAGATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
30 7 0.18
31 22 0.58
32 9 0.24
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.70
Consensus pattern (31 bp):
TTATTTATTTTATTTTGAATCTATATTTTTA
Found at i:6801983 original size:6 final size:6
Alignment explanation
Indices: 6801943--6801995 Score: 54
Period size: 6 Copynumber: 8.5 Consensus size: 6
6801933 ATTTAATCTA
* *
6801943 ATTTTT ATTATTT A-TTTT AGTTTTG ATTCTAT ATTTTT ATTTTT ATTTTT
1 ATTTTT ATT-TTT ATTTTT A-TTTTT ATT-TTT ATTTTT ATTTTT ATTTTT
6801993 ATT
1 ATT
6801996 AGATAATGAA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
5 4 0.10
6 23 0.59
7 12 0.31
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.74
Consensus pattern (6 bp):
ATTTTT
Found at i:6802163 original size:43 final size:42
Alignment explanation
Indices: 6802091--6802238 Score: 197
Period size: 43 Copynumber: 3.5 Consensus size: 42
6802081 TTATATTTTT
* *
6802091 CATGACCTTTAGCGGCGTTTTTTGGAAAAGCGCCGCTAAAGCC
1 CATGACCTTTAGCGGCG-TTTGTGGAAAAGCGCCGCTAAAGGC
** * *
6802134 CATGTTCTTTAGCGGCGTTTGTGATAAAAGCGTCGCTAAAGGC
1 CATGACCTTTAGCGGCGTTTGTG-GAAAAGCGCCGCTAAAGGC
* *
6802177 CATGACCTTTAGCGGCGTTTGTGGGGAAAGCACCGCTAAAGGC
1 CATGACCTTTAGCGGCGTTTGT-GGAAAAGCGCCGCTAAAGGC
6802220 CATGACCTTTAGCGGCGTT
1 CATGACCTTTAGCGGCGTT
6802239 ATCTATAACG
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
42 5 0.05
43 85 0.93
44 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (42 bp):
CATGACCTTTAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGC
Found at i:6803767 original size:24 final size:24
Alignment explanation
Indices: 6803735--6803819 Score: 127
Period size: 24 Copynumber: 3.5 Consensus size: 24
6803725 GCCAAACGTT
6803735 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTATTATGTTC
6803759 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTATTATGTTC
* **
6803783 GCACACATAGTGCTATAGTA-AATC
1 GCACACATAGTGCT-TATTATGTTC
6803807 GCACACATAGTGC
1 GCACACATAGTGC
6803820 CATAGTAAAT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
24 53 0.93
25 4 0.07
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (24 bp):
GCACACATAGTGCTTATTATGTTC
Found at i:6803824 original size:24 final size:24
Alignment explanation
Indices: 6803781--6803843 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
6803771 CTTATTATGT
*
6803781 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
6803805 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
6803829 TCGCACACATAGTGC
1 TCGCACACATAGTGC
6803844 ATTTGAGATT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.22
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:6806002 original size:2 final size:2
Alignment explanation
Indices: 6805995--6806027 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
6805985 TAATATGGTT
6805995 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6806028 TAATCATTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6810768 original size:46 final size:44
Alignment explanation
Indices: 6810718--6810806 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 44
6810708 TTTGAGTAAA
*
6810718 ATAGAAATTGTAATAATTTTTACA-TTTTAAATATAATTATAATTTT
1 ATAGAAATTGTAATAA---TTACAGTTTTAAAAATAATTATAATTTT
* *
6810764 ATAGAAATTGTGATAATTGCAGTTTTAAAAATAATTATAATTT
1 ATAGAAATTGTAATAATTACAGTTTTAAAAATAATTATAATTT
6810807 AATTTATGTT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
43 4 0.10
44 20 0.51
46 15 0.38
ACGTcount: A:0.44, C:0.02, G:0.08, T:0.46
Consensus pattern (44 bp):
ATAGAAATTGTAATAATTACAGTTTTAAAAATAATTATAATTTT
Found at i:6828570 original size:26 final size:26
Alignment explanation
Indices: 6828541--6828590 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
6828531 GGTATATAAA
*
6828541 AAATAGATAATACATATAAAAATTTG
1 AAATAGATAATACATAAAAAAATTTG
* *
6828567 AAATTGATAATATATAAAAAAATT
1 AAATAGATAATACATAAAAAAATT
6828591 AAAGTAAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (26 bp):
AAATAGATAATACATAAAAAAATTTG
Found at i:6828606 original size:21 final size:22
Alignment explanation
Indices: 6828575--6828625 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
6828565 TGAAATTGAT
*
6828575 AATATATAAAAAAATT-AAAGTA
1 AATA-ATAAAAAAATTGAAAATA
* *
6828597 AATAATAAAACAATTGAAAATG
1 AATAATAAAAAAATTGAAAATA
6828619 AATAATA
1 AATAATA
6828626 CATAAAACAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 10 0.40
22 15 0.60
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.25
Consensus pattern (22 bp):
AATAATAAAAAAATTGAAAATA
Found at i:6828658 original size:27 final size:26
Alignment explanation
Indices: 6828597--6828651 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 26
6828587 AATTAAAGTA
*
6828597 AATA-ATAAAACAATTGAAAATGAAT
1 AATACATAAAACAATTGAAAATAAAT
*
6828622 AATACATAAAACAAGTTTAAAATAAAT
1 AATACATAAAACAA-TTGAAAATAAAT
6828649 AAT
1 AAT
6828652 GTATAAAGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 4 0.15
26 9 0.35
27 13 0.50
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.25
Consensus pattern (26 bp):
AATACATAAAACAATTGAAAATAAAT
Found at i:6828767 original size:27 final size:27
Alignment explanation
Indices: 6828711--6828764 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
6828701 CATATATGAA
* *
6828711 TAATTTTAAAATAAATAATATATAAGT
1 TAATTTAAAAATAAATAATATAGAAGT
6828738 TAATTTAAAAAT-AATAA-ATAAGAAGT
1 TAATTTAAAAATAAATAATAT-AGAAGT
6828764 T
1 T
6828765 TAAAATATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 2 0.08
26 11 0.46
27 11 0.46
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (27 bp):
TAATTTAAAAATAAATAATATAGAAGT
Found at i:6828771 original size:21 final size:22
Alignment explanation
Indices: 6828723--6828769 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
6828713 ATTTTAAAAT
*
6828723 AAATAATATATAAGTTAATTTAA
1 AAATAATAAATAAG-TAATTTAA
6828746 AAATAATAAATAAG-AAGTTTAA
1 AAATAATAAATAAGTAA-TTTAA
6828768 AA
1 AA
6828770 TATATAATAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 2 0.09
22 7 0.32
23 13 0.59
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (22 bp):
AAATAATAAATAAGTAATTTAA
Found at i:6832975 original size:141 final size:140
Alignment explanation
Indices: 6832642--6833463 Score: 1020
Period size: 141 Copynumber: 5.9 Consensus size: 140
6832632 CAAAACAGTA
* * * *
6832642 CTAATACGACACT-TATATGGCAACACTTTCTTAAGTGTTGGGATAAAC-TGGCCAACACACGCT
1 CTAAGACGACACTAT-TATGGCGACACTTTCTTAAGTGTTGGGATAGACAT-GCCAACATACGCT
* * * *
6832705 TTA-GCTAACTTTTTGTATAAGGGTTGGGATATGCATGCTTAAAGCAACGCTTAAATAAGAGTTG
64 TTAGGC-AACTCTTTGTATAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTAAATAAGAGTTG
* * *
6832769 GCTTTGTCTAGCC
128 GTTTTGTGTAGTC
* * * *
6832782 CTAAGACGACACTATTATGGCGACGCTTTTTTAAGTGTTGCGATAGACATGCCAAGATACGCTTT
1 CTAAGACGACACTATTATGGCGACACTTTCTTAAGTGTTGGGATAGACATGCCAACATACGCTTT
* * *
6832847 AGGCAACTCTTTGTATAAGGGTTAGGATATGTATGCCTAAGGCAATGCTTGAATAAGAGTTGGTT
66 AGGCAACTCTTTGTATAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTAAATAAGAGTTGG-T
6832912 TTTGTGTAGTC
130 TTTGTGTAGTC
* * *
6832923 CTAAGACGACACTATTTTGGCGACACTTTCTTATGTGTTGGGATAGACATGCCAATATACGCTTT
1 CTAAGACGACACTATTATGGCGACACTTTCTTAAGTGTTGGGATAGACATGCCAACATACGCTTT
*
6832988 AGGCAACTCTTTGTATAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCT
66 AGGCAACTCTTTGTATAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTAAATAAGAGTTGG-T
6833053 TTTGTGTAGTC
130 TTTGTGTAGTC
* * *
6833064 CTAAGACGACACTATTGTGGCGACACTTTCTTAAGTGTTGGGATATACATGCCAATATACGCTTT
1 CTAAGACGACACTATTATGGCGACACTTTCTTAAGTGTTGGGATAGACATGCCAACATACGCTTT
* * *
6833129 AGGCAACTCTTTGTATAAGGGTTGGAATATGTATGTCTAAGGCAACGCTTGAATAAGAGTTGGCT
66 AGGCAACTCTTTGTATAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTAAATAAGAGTTGG-T
6833194 TTTGTGTAGTC
130 TTTGTGTAGTC
* ** * *
6833205 CTAAGACGACACTATTGTGGCGACACTTTCTTAAGTGTTGGGATAGAGTTGCCAACTTATG-TTT
1 CTAAGACGACACTATTATGGCGACACTTTCTTAAGTGTTGGGATAGACATGCCAACATACGCTTT
* * * * *
6833269 TGGCCAACTCTTTGTATAAGGGTTGGTATATGTATGCCTAAGTCAACGCTTAAATAATAGTTGGA
66 AGG-CAACTCTTTGTATAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTAAATAAGAGTTGGT
**
6833334 TTTGTCCAGTC
130 TTTGTGTAGTC
* * * * * **
6833345 CTAAGACGATA-TA-TAT----ATA-TATTCCTAAGTGTTGGGATAGACTTTCTGACATACGCTT
1 CTAAGACGACACTATTATGGCGACACT-TTCTTAAGTGTTGGGATAGACATGCCAACATACGCTT
* * **
6833403 T-GGTCAACTTTTTGTATAAGGGTTGGGATATGTATGCTTAAGGCAAAACTTAAATAAGAGT
65 TAGG-CAACTCTTTGTATAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTAAATAAGAGT
6833464 CGGCTTTATC
Statistics
Matches: 610, Mismatches: 65, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
133 1 0.00
134 81 0.13
135 3 0.00
138 2 0.00
139 2 0.00
140 130 0.21
141 391 0.64
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.34
Consensus pattern (140 bp):
CTAAGACGACACTATTATGGCGACACTTTCTTAAGTGTTGGGATAGACATGCCAACATACGCTTT
AGGCAACTCTTTGTATAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTAAATAAGAGTTGGTT
TTGTGTAGTC
Found at i:6833614 original size:7 final size:7
Alignment explanation
Indices: 6833589--6833664 Score: 86
Period size: 7 Copynumber: 11.3 Consensus size: 7
6833579 CATATATAAG
6833589 GGGTTTA
1 GGGTTTA
*
6833596 GGGTGTA
1 GGGTTTA
*
6833603 TGGTTTA
1 GGGTTTA
6833610 GGGTTTA
1 GGGTTTA
6833617 GGGTTTA
1 GGGTTTA
6833624 GGGTTTA
1 GGGTTTA
*
6833631 GGATTTA
1 GGGTTTA
* *
6833638 GGGTGTG
1 GGGTTTA
6833645 GGGTTTA
1 GGGTTTA
6833652 --G-TTA
1 GGGTTTA
6833656 GGGTTTA
1 GGGTTTA
6833663 GG
1 GG
6833665 ATTAACAGTT
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
4 3 0.05
5 1 0.02
6 1 0.02
7 51 0.91
ACGTcount: A:0.14, C:0.00, G:0.45, T:0.41
Consensus pattern (7 bp):
GGGTTTA
Found at i:6834692 original size:35 final size:35
Alignment explanation
Indices: 6834646--6834750 Score: 138
Period size: 35 Copynumber: 3.0 Consensus size: 35
6834636 GAAAACCAAT
* *
6834646 TGCATCTGCCGTTCACAACCTGCTCCAGGCACTGG
1 TGCATCTGCCGTTCACCACCTGCTCCAGCCACTGG
* * *
6834681 TGCATCTGCCGTTCACCACCTGATTCACCCACTGG
1 TGCATCTGCCGTTCACCACCTGCTCCAGCCACTGG
* * *
6834716 TGTATCTGCCGTCCACCACCTGCTCCAGCTACTGG
1 TGCATCTGCCGTTCACCACCTGCTCCAGCCACTGG
6834751 CATTTGACGA
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 59 1.00
ACGTcount: A:0.16, C:0.39, G:0.20, T:0.25
Consensus pattern (35 bp):
TGCATCTGCCGTTCACCACCTGCTCCAGCCACTGG
Found at i:6840909 original size:37 final size:37
Alignment explanation
Indices: 6840859--6840933 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
6840849 CTCCTAAGGG
6840859 TATGAAGAATGATACAAATGGTTTTATTATGGTGAAA
1 TATGAAGAATGATACAAATGGTTTTATTATGGTGAAA
6840896 TATGAAGAATGATACAAATGGTTTTATTATGGTGAAA
1 TATGAAGAATGATACAAATGGTTTTATTATGGTGAAA
6840933 T
1 T
6840934 TTTCTGAGCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.40, C:0.03, G:0.21, T:0.36
Consensus pattern (37 bp):
TATGAAGAATGATACAAATGGTTTTATTATGGTGAAA
Found at i:6844475 original size:20 final size:18
Alignment explanation
Indices: 6844452--6844504 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
6844442 TTTAAACTAG
6844452 TTTATTACCTTCTACTGGTA
1 TTTATT-CCTTCT-CTGGTA
*
6844472 TTTATTCTTTCTCTGGTA
1 TTTATTCCTTCTCTGGTA
* * *
6844490 CTTGTTCTTTCTCTG
1 TTTATTCCTTCTCTG
6844505 ATTATGTGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
18 19 0.63
19 5 0.17
20 6 0.20
ACGTcount: A:0.11, C:0.21, G:0.11, T:0.57
Consensus pattern (18 bp):
TTTATTCCTTCTCTGGTA
Found at i:6844489 original size:18 final size:18
Alignment explanation
Indices: 6844461--6844504 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
6844451 GTTTATTACC
*
6844461 TTCTACTGGTATTTATTCT
1 TTCT-CTGGTACTTATTCT
*
6844480 TTCTCTGGTACTTGTTCT
1 TTCTCTGGTACTTATTCT
6844498 TTCTCTG
1 TTCTCTG
6844505 ATTATGTGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.09, C:0.20, G:0.14, T:0.57
Consensus pattern (18 bp):
TTCTCTGGTACTTATTCT
Found at i:6847822 original size:45 final size:45
Alignment explanation
Indices: 6847758--6847844 Score: 129
Period size: 45 Copynumber: 1.9 Consensus size: 45
6847748 CAGTTTTCTC
* *
6847758 ATAATTTTTTGGTGCCATGGGAATCAAGTCGACAAAATGTTTTGT
1 ATAATTTTTTGATACCATGGGAATCAAGTCGACAAAATGTTTTGT
* * *
6847803 ATAATTTTTTGATATCATGGGAATCAAGTTGACAACATGTTT
1 ATAATTTTTTGATACCATGGGAATCAAGTCGACAAAATGTTT
6847845 GCAACGTGTT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (45 bp):
ATAATTTTTTGATACCATGGGAATCAAGTCGACAAAATGTTTTGT
Found at i:6848303 original size:73 final size:73
Alignment explanation
Indices: 6848198--6848596 Score: 408
Period size: 73 Copynumber: 5.5 Consensus size: 73
6848188 TGCTGTAAAT
* * * * *
6848198 AGGTCTATCCCAACATTTTTAACGTTGTCTTAGATAGGTCAATACCAGCCTTTTATAAAAGTTGC
1 AGGTCTATCCCAACCTTTTTAAGGTTGCCTTAGATAGGTCAATACCAACCTTTTTTAAAAGTTGC
*
6848263 CTTAGACG
66 CTTAGACA
* * * * * * *
6848271 AGATTTATCTCAACCTTTTTAAGGTTACCTTAGATGGGTTTATTA-CAACCTTTTTTAAAAGTTG
1 AGGTCTATCCCAACCTTTTTAAGGTTGCCTTAGATAGG-TCAATACCAACCTTTTTTAAAAGTTG
6848335 CCTTAGACA
65 CCTTAGACA
* * * * * * * *
6848344 AGGTCCATCCCAACCATTTTAATGTTGCCTTAGATGGGTCTATCCCAACATTTTTTAAAGGTTGC
1 AGGTCTATCCCAACCTTTTTAAGGTTGCCTTAGATAGGTCAATACCAACCTTTTTTAAAAGTTGC
6848409 CTTAGACA
66 CTTAGACA
* * * *
6848417 TGGTCTATCCCAA-CTTATTTAAGGTTGCCTTAGATAGGTCTATCCCAACCTTTTTTTATAAGTT
1 AGGTCTATCCCAACCTT-TTTAAGGTTGCCTTAGATAGGTCAATACCAACC-TTTTTTAAAAGTT
*
6848481 GTCTTAGACA
64 GCCTTAGACA
* * * * **
6848491 AGGTCTATCCCAACCTTTTTAAGGTTGCCTTAGA-CGAATCTATCCCAACAGTTTTTAAAAGTTG
1 AGGTCTATCCCAACCTTTTTAAGGTTGCCTTAGATAG-GTCAATACCAACCTTTTTTAAAAGTTG
6848555 CCTTAGACA
65 CCTTAGACA
** ** *
6848564 AGAACTATAGCAACCTTTTTAATGTTGCCTTAG
1 AGGTCTATCCCAACCTTTTTAAGGTTGCCTTAG
6848597 CAAGGTTTCT
Statistics
Matches: 273, Mismatches: 47, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
72 4 0.01
73 202 0.74
74 64 0.23
75 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.37
Consensus pattern (73 bp):
AGGTCTATCCCAACCTTTTTAAGGTTGCCTTAGATAGGTCAATACCAACCTTTTTTAAAAGTTGC
CTTAGACA
Found at i:6848519 original size:147 final size:145
Alignment explanation
Indices: 6848131--6848655 Score: 460
Period size: 147 Copynumber: 3.6 Consensus size: 145
6848121 TAGATGGGTT
* * * **
6848131 TATCCCAACTTTTTTTAA-GTTACATTAGAAAAGGTCTATC-CTAACCTTTTTT-AGTGTTG-CT
1 TATCCCAAC-CTTTTTAAGGTTACCTTAG-ATAGGTCTATCAC-AACCTTTTTTAAAAGTTGCCT
* * * * * * * *
6848192 GTA-A-ATAGGTCTATCCCAACATTTTTAACGTTGTCTTAGATAGGTCAATACCAGCCTTTTATA
63 -TAGACA-AGGTCTATCCCAACCTTTTTAACGTTGCCTTAGATGGGTCTATCCCAACATTTTTTA
*
6848255 AAAGTTGCCTTAGACGAGATT
126 AAAGTTGCCTTAGAC-AGATC
* * * *
6848276 TATCTCAACCTTTTTAAGGTTACCTTAGATGGGTTTATTACAACCTTTTTTAAAAGTTGCCTTAG
1 TATCCCAACCTTTTTAAGGTTACCTTAGATAGGTCTATCACAACCTTTTTTAAAAGTTGCCTTAG
* * * *
6848341 ACAAGGTCCATCCCAACCATTTTAATGTTGCCTTAGATGGGTCTATCCCAACATTTTTTAAAGGT
66 ACAAGGTCTATCCCAACCTTTTTAACGTTGCCTTAGATGGGTCTATCCCAACATTTTTTAAAAGT
*
6848406 TGCCTTAGACATGGTC
131 TGCCTTAGACA-GATC
* * * *
6848422 TATCCCAA-CTTATTTAAGGTTGCCTTAGATAGGTCTATCCCAACCTTTTTTTATAAGTTGTCTT
1 TATCCCAACCTT-TTTAAGGTTACCTTAGATAGGTCTATCACAACC-TTTTTTAAAAGTTGCCTT
* * ** *
6848486 AGACAAGGTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGAATCTATCCCAACAGTTTTTAAAA
64 AGACAAGGTCTATCCCAACCTTTTTAACGTTGCCTTAGATGGGTCTATCCCAACATTTTTTAAAA
*
6848551 GTTGCCTTAGACAAGAAC
129 GTTGCCTTAGAC-AGATC
** * * * * * * *
6848569 TATAGCAACCTTTTTAATGTTGCCTTAGCA-AGGTTTCTCACAA--TATTTGAAAAGGTTGGTCT
1 TATCCCAACCTTTTTAAGGTTACCTTAG-ATAGGTCTATCACAACCTTTTTTAAAA-GTT-GCCT
* *
6848631 T-GACTAGGTCTATCCCAACCCTTTT
63 TAGACAAGGTCTATCCCAACCTTTTT
6848656 CAAGGGTCGT
Statistics
Matches: 314, Mismatches: 52, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
144 31 0.10
145 54 0.17
146 105 0.33
147 119 0.38
148 5 0.02
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.37
Consensus pattern (145 bp):
TATCCCAACCTTTTTAAGGTTACCTTAGATAGGTCTATCACAACCTTTTTTAAAAGTTGCCTTAG
ACAAGGTCTATCCCAACCTTTTTAACGTTGCCTTAGATGGGTCTATCCCAACATTTTTTAAAAGT
TGCCTTAGACAGATC
Found at i:6848524 original size:220 final size:219
Alignment explanation
Indices: 6848199--6848596 Score: 528
Period size: 220 Copynumber: 1.8 Consensus size: 219
6848189 GCTGTAAATA
* *
6848199 GGTCTATCCCAACATTTTTAACGTTGTCTTAGATAGGTCAATACCAGCCTTTTATAAAAGTTGCC
1 GGTCTATCCCAACATTTTTAACGTTGCCTTAGATAGGTCAATACCAACCTTTTATAAAAGTTGCC
* * * * ** * * **
6848264 TTAGACGAGATTTATCTCAACCTTTTTAAGGTTACCTTAGATGGGTTTATTACAACCTTTTTTAA
66 TTAGACAAGATCTATCCCAACCTTTTTAAGGTTACCTTAGACGAATCTATCACAACAGTTTTTAA
** *
6848329 AAGTTGCCTTAGACAAGGTCCATCCCAACCATTTTAATGTTGCCTTAGATGGGTCTATCCCAACA
131 AAGTTGCCTTAGACAAGAACCATACCAACCATTTTAATGTTGCCTTAGATGGGTCTATCCCAACA
6848394 TTTTTTAAAGGTTGCCTTAGACAT
196 TTTTTTAAAGGTTGCCTTAGACAT
* * * * *
6848418 GGTCTATCCCAAC-TTATTTAAGGTTGCCTTAGATAGGTCTATCCCAACCTTTTTTTATAAGTTG
1 GGTCTATCCCAACATT-TTTAACGTTGCCTTAGATAGGTCAATACCAACC-TTTTATAAAAGTTG
* * * *
6848482 TCTTAGACAAGGTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGAATCTATCCCAACAGTTTTT
64 CCTTAGACAAGATCTATCCCAACCTTTTTAAGGTTACCTTAGACGAATCTATCACAACAGTTTTT
* * *
6848547 AAAAGTTGCCTTAGACAAGAACTATAGCAACCTTTTTAATGTTGCCTTAG
129 AAAAGTTGCCTTAGACAAGAACCATACCAACCATTTTAATGTTGCCTTAG
6848597 CAAGGTTTCT
Statistics
Matches: 150, Mismatches: 27, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
218 2 0.01
219 41 0.27
220 107 0.71
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (219 bp):
GGTCTATCCCAACATTTTTAACGTTGCCTTAGATAGGTCAATACCAACCTTTTATAAAAGTTGCC
TTAGACAAGATCTATCCCAACCTTTTTAAGGTTACCTTAGACGAATCTATCACAACAGTTTTTAA
AAGTTGCCTTAGACAAGAACCATACCAACCATTTTAATGTTGCCTTAGATGGGTCTATCCCAACA
TTTTTTAAAGGTTGCCTTAGACAT
Found at i:6848583 original size:37 final size:36
Alignment explanation
Indices: 6848316--6848600 Score: 204
Period size: 36 Copynumber: 7.8 Consensus size: 36
6848306 GGGTTTATTA
** *
6848316 CAACCTTTTTTAAAAGTTGCCTTAGACAAGGTCCATCC
1 CAACC-TTTTT-AAAGTTGCCTTAGACAAGAACTATCC
* * ** **
6848354 CAACCATTTTAATGTTGCCTTAGA-TGGGTCTATCC
1 CAACCTTTTTAAAGTTGCCTTAGACAAGAACTATCC
* * **
6848389 CAACATTTTTTAAAGGTTGCCTTAGACATGGTCTATCC
1 CAAC-CTTTTTAAA-GTTGCCTTAGACAAGAACTATCC
* * **
6848427 CAA-CTTATTTAAGGTTGCCTTAGA-TAGGTCTATCC
1 CAACCTT-TTTAAAGTTGCCTTAGACAAGAACTATCC
* **
6848462 CAACCTTTTTTTATAAGTTGTCTTAGACAAGGTCTATCC
1 CAACC--TTTTTA-AAGTTGCCTTAGACAAGAACTATCC
*
6848501 CAACCTTTTTAAGGTTGCCTTAGAC--GAATCTATCC
1 CAACCTTTTTAAAGTTGCCTTAGACAAGAA-CTATCC
* **
6848536 CAACAGTTTTTAAAAGTTGCCTTAGACAAGAACTATAG
1 CAAC-CTTTTT-AAAGTTGCCTTAGACAAGAACTATCC
*
6848574 CAACCTTTTTAATGTTGCCTTAG-CAAG
1 CAACCTTTTTAAAGTTGCCTTAGACAAG
6848601 GTTTCTCACA
Statistics
Matches: 206, Mismatches: 27, Indels: 31
0.78 0.10 0.12
Matches are distributed among these distances:
34 1 0.00
35 38 0.18
36 62 0.30
37 49 0.24
38 38 0.18
39 18 0.09
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (36 bp):
CAACCTTTTTAAAGTTGCCTTAGACAAGAACTATCC
Found at i:6854999 original size:25 final size:25
Alignment explanation
Indices: 6854970--6855025 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
6854960 TGTGAAGTTC
6854970 AATGTTTTAATCAATTAACATCAAT
1 AATGTTTTAATCAATTAACATCAAT
6854995 AATGTTTTAATCAATTAACATCAAT
1 AATGTTTTAATCAATTAACATCAAT
*
6855020 ATTGTT
1 AATGTT
6855026 ACGAATGTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.41, C:0.11, G:0.05, T:0.43
Consensus pattern (25 bp):
AATGTTTTAATCAATTAACATCAAT
Found at i:6859424 original size:19 final size:19
Alignment explanation
Indices: 6859400--6859438 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
6859390 AATGTAATTG
*
6859400 AATTTTACTATAAATTTTC
1 AATTTTACTAAAAATTTTC
6859419 AATTTTACTAAAAATTTTC
1 AATTTTACTAAAAATTTTC
6859438 A
1 A
6859439 CCAAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (19 bp):
AATTTTACTAAAAATTTTC
Found at i:6861784 original size:2 final size:2
Alignment explanation
Indices: 6861777--6861821 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
6861767 TTGAAGTTCA
6861777 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6861819 AT A
1 AT A
6861822 CTTTAATATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6864500 original size:3 final size:3
Alignment explanation
Indices: 6864489--6864530 Score: 68
Period size: 3 Copynumber: 14.0 Consensus size: 3
6864479 CGATAATCAT
6864489 CAA CGAA CAA C-A CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
1 CAA C-AA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
6864531 TAATAATAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 2 0.05
3 32 0.86
4 3 0.08
ACGTcount: A:0.64, C:0.33, G:0.02, T:0.00
Consensus pattern (3 bp):
CAA
Found at i:6864793 original size:3 final size:3
Alignment explanation
Indices: 6864787--6864906 Score: 68
Period size: 3 Copynumber: 40.7 Consensus size: 3
6864777 GGAAAACAAT
* * * * * * *
6864787 ATA ATA ATA ATA ATA GTG GTA AT- ACA ATA GTA ATA CTA ATA ATA ACA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
6864834 A-A ATA GA-G ATA ATA ATA GTG ATGA A-A ATA ATA CTA ATA GTA ATA
1 ATA ATA -ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA
* *
6864878 ATA ATA ATA ATA ATA ATA GTT ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
6864907 GAACATATAT
Statistics
Matches: 86, Mismatches: 25, Indels: 12
0.70 0.20 0.10
Matches are distributed among these distances:
2 6 0.07
3 78 0.91
4 2 0.02
ACGTcount: A:0.57, C:0.03, G:0.09, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:6866681 original size:44 final size:43
Alignment explanation
Indices: 6866633--6867140 Score: 197
Period size: 44 Copynumber: 11.5 Consensus size: 43
6866623 TTGATCTACT
* *
6866633 CCACTGCAACTTCAGGGAGATAGGACTCGTAACTTCAACTTGCC
1 CCACTGCAACTTCAGGGAGATAGGATTTGTAACTTCAA-TTGCC
** * * * * *
6866677 CCACTGTGACTTCAGGGGGATAAGG-TTTATAGCTTTAATTTGCT
1 CCACTGCAACTTCAGGGAGAT-AGGATTTGTAACTTCAA-TTGCC
* * * * * *
6866721 CTACTGCAACTTCAGAGAGGTAAGATTTGCTATCTTCAA-TCCAC
1 CCACTGCAACTTCAGGGAGATAGGATTTG-TAACTTCAATTGC-C
* * * * * * *
6866765 TCCACTACAACTTCAGGGAGATAGGACTCGTAACTTTAACCTACT
1 -CCACTGCAACTTCAGGGAGATAGGATTTGTAACTTCAA-TTGCC
* * * *
6866810 CCACTGCAACTTCAAGGG-GATAAGG-TTTATAGCTTTAATCTGCT
1 CCACTGCAACTTC-AGGGAGAT-AGGATTTGTAACTTCAAT-TGCC
* * * *
6866854 CTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAA-T-CC
1 CCACTGCAACTTCAGGGAGATAGGATTTG-TAACTTCAATTGCC
* * * * *
6866896 ATTCTACTGCAACTTTAGGGAGATAGGACTCGTAACTTCAACCTGCC
1 ---CCACTGCAACTTCAGGGAGATAGGATTTGTAACTTCAA-TTGCC
* * * * *
6866943 CCACTGCAACTTCAGGGGGATAAGG-TTTATAGCTTTAATCTGCT
1 CCACTGCAACTTCAGGGAGAT-AGGATTTGTAACTTCAAT-TGCC
* * ** * * * **
6866987 CTACTGCAACTTTAGATAGATAAGATTTGCTATCTTCAATCCGTT
1 CCACTGCAACTTCAGGGAGATAGGATTTG-TAACTTCAAT-TGCC
* * * * *
6867032 CTACTACAACTTCAGGGAGATAGGACTTGTAACTTCAACCTGCT
1 CCACTGCAACTTCAGGGAGATAGGATTTGTAACTTCAA-TTGCC
** * * * * *
6867076 CCACTGTGACTTCAGAGAGATAAGG-TTAGTGA-TTCGATCTGCT
1 CCACTGCAACTTCAGGGAGAT-AGGATTTGTAACTTCAAT-TGCC
*
6867119 CCACTGCAACTTTAGGGAGATA
1 CCACTGCAACTTCAGGGAGATA
6867141 AAATTGGTAT
Statistics
Matches: 340, Mismatches: 98, Indels: 54
0.69 0.20 0.11
Matches are distributed among these distances:
42 2 0.01
43 37 0.11
44 186 0.55
45 110 0.32
46 3 0.01
47 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (43 bp):
CCACTGCAACTTCAGGGAGATAGGATTTGTAACTTCAATTGCC
Found at i:6866814 original size:133 final size:133
Alignment explanation
Indices: 6866630--6867155 Score: 725
Period size: 133 Copynumber: 4.0 Consensus size: 133
6866620 GATTTGATCT
* * **
6866630 ACTCCACTGCAACTTCAGGGAGATAGGACTCGTAACTTCAACTTGCCCCACTGTGACTTCAGGGG
1 ACTCCACTACAACTTCAGGGAGATAGGACTCGTAACTTCAACCTGCCCCACTGCAACTTCAGGGG
* *
6866695 GATAAGGTTTATAGCTTTAATTTGCTCTACTGCAACTTCAGAGAGGTAAGATTTGCTATCTTCAA
66 GATAAGGTTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAA
6866760 TCC
131 TCC
* * * *
6866763 ACTCCACTACAACTTCAGGGAGATAGGACTCGTAACTTTAACCTACTCCACTGCAACTTCAAGGG
1 ACTCCACTACAACTTCAGGGAGATAGGACTCGTAACTTCAACCTGCCCCACTGCAACTTCAGGGG
6866828 GATAAGGTTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAA
66 GATAAGGTTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAA
6866893 TCC
131 TCC
* * * *
6866896 ATTCTACTGCAACTTTAGGGAGATAGGACTCGTAACTTCAACCTGCCCCACTGCAACTTCAGGGG
1 ACTCCACTACAACTTCAGGGAGATAGGACTCGTAACTTCAACCTGCCCCACTGCAACTTCAGGGG
* *
6866961 GATAAGGTTTATAGCTTTAATCTGCTCTACTGCAACTTTAGATAGATAAGATTTGCTATCTTCAA
66 GATAAGGTTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAA
6867026 TCC
131 TCC
** * * * ** * *
6867029 GTTCTACTACAACTTCAGGGAGATAGGACTTGTAACTTCAACCTGCTCCACTGTGACTTCAGAGA
1 ACTCCACTACAACTTCAGGGAGATAGGACTCGTAACTTCAACCTGCCCCACTGCAACTTCAGGGG
* ** * * * * *
6867094 GATAAGG-TTAGT-GATTCGATCTGCTCCACTGCAACTTTAGGGAGATAA-AATTGGTATCTTCA
66 GATAAGGTTTA-TAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCA
6867156 GTCTGCTCTA
Statistics
Matches: 355, Mismatches: 37, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
131 12 0.03
132 33 0.09
133 310 0.87
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (133 bp):
ACTCCACTACAACTTCAGGGAGATAGGACTCGTAACTTCAACCTGCCCCACTGCAACTTCAGGGG
GATAAGGTTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAA
TCC
Found at i:6867075 original size:89 final size:89
Alignment explanation
Indices: 6866717--6867099 Score: 312
Period size: 89 Copynumber: 4.3 Consensus size: 89
6866707 AGCTTTAATT
* *
6866717 TGCTCTACTGCAACTTCAGAGAGGTAAGATTTGCTATCTTCAATCCACTCCACTACAACTTCAGG
1 TGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCCGCTCCACTACAACTTCAGG
* *
6866782 GAGATAGGACTCGTAACTTTAACC
66 GAGATAGGACTTGTAACTTCAACC
* * * * * * * * * *
6866806 TACTCCACTGCAACTTCA-AGGGGATAAGGTTT-ATAGCTTTAATCTGCTCTACTGCAACTTCAG
1 TGCTCTACTGCAACTTCAGA-GAGATAAGATTTGCTATCTTCAATCCGCTCCACTACAACTTCAG
* * * *
6866869 AGAGATAAGATTTGCTATCTTCAATCC
65 GGAGATAGGACTTG-TAACTTCAA-CC
* * * * * * * *
6866896 AT--TCTACTGCAACTTTAGGGAGATAGGACTCG-TAACTTCAA-CCTGCCCCACTGCAACTTCA
1 -TGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCC-GCTCCACTACAACTTCA
* * * * * *
6866957 GGGGGATAAGG-TTTATAGCTTTAATC
64 GGGAGAT-AGGACTTGTAACTTCAACC
* * * *
6866983 TGCTCTACTGCAACTTTAGATAGATAAGATTTGCTATCTTCAATCCGTTCTACTACAACTTCAGG
1 TGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCCGCTCCACTACAACTTCAGG
6867048 GAGATAGGACTTGTAACTTCAACC
66 GAGATAGGACTTGTAACTTCAACC
* **
6867072 TGCTCCACTGTGACTTCAGAGAGATAAG
1 TGCTCTACTGCAACTTCAGAGAGATAAG
6867100 GTTAGTGATT
Statistics
Matches: 222, Mismatches: 59, Indels: 26
0.72 0.19 0.08
Matches are distributed among these distances:
86 1 0.00
87 1 0.00
88 71 0.32
89 142 0.64
90 6 0.03
91 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (89 bp):
TGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCCGCTCCACTACAACTTCAGG
GAGATAGGACTTGTAACTTCAACC
Found at i:6867227 original size:88 final size:89
Alignment explanation
Indices: 6867109--6867579 Score: 449
Period size: 88 Copynumber: 5.4 Consensus size: 89
6867099 GGTTAGTGAT
* * * * ** * * *
6867109 TCGATCTGCTCCACTGCAACTTTAGGGAGATA-AAATTGGTATCTTC-AGTCTGCTCTAATACCA
1 TCGATCTACTCCACTGAAACTTCAAGGAGATACAAATTGGTGGCTTCGAG-CCGCTCCAATGCCA
*
6867172 TTTCAAGAAGAAGAGATTTGTAGCC
65 TTTCAGGAAGAAGAGATTTGTAGCC
* * *
6867197 TCGATCTACTCCGCTGAAACTTCAAGGAGATACGAACT-GTGGCTTCGAGCCGCTCCAATGCCA-
1 TCGATCTACTCCACTGAAACTTCAAGGAGATACAAATTGGTGGCTTCGAGCCGCTCCAATGCCAT
6867260 TTCAGGGAA-AAGAGATTTGTAGCC
66 TTCA-GGAAGAAGAGATTTGTAGCC
* * * * * ** *
6867284 TCGATCTACTCCACTGGAACTTCAAGGAGGTACGAACT-GTGGCTTTGAGTAGCTCCAATTCCAT
1 TCGATCTACTCCACTGAAACTTCAAGGAGATACAAATTGGTGGCTTCGAGCCGCTCCAATGCCAT
* *
6867348 TTTAGGGAGAAGAGATTTGTAGCC
66 TTCAGGAAGAAGAGATTTGTAGCC
** * * * *
6867372 TCGATCTACTTTGA-TGAAACTTCAAGGAGATACGAACT-ATGGCTTCGAGCCGCTCCAATGCTA
1 TCGATCTAC-TCCACTGAAACTTCAAGGAGATACAAATTGGTGGCTTCGAGCCGCTCCAATGCCA
* * *
6867435 TTTCAGGGAGAAAAGATTTGTAGCT
65 TTTCAGGAAGAAGAGATTTGTAGCC
* * * * * * *
6867460 TCGATCTTCTTCGCTGGAACTTCAAGGAGATACGAACT-GTGGCTTCGAGCTGCTCCAATGCCAT
1 TCGATCTACTCCACTGAAACTTCAAGGAGATACAAATTGGTGGCTTCGAGCCGCTCCAATGCCAT
* * * *
6867524 TTTAGGGAA-AAGATATTTGCAGCT
66 TTCA-GGAAGAAGAGATTTGTAGCC
6867548 TCGATCTACTCCACTGAAACTTCAAGGAGATA
1 TCGATCTACTCCACTGAAACTTCAAGGAGATA
6867580 AGAATTGTTG
Statistics
Matches: 324, Mismatches: 51, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
87 80 0.25
88 234 0.72
89 10 0.03
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (89 bp):
TCGATCTACTCCACTGAAACTTCAAGGAGATACAAATTGGTGGCTTCGAGCCGCTCCAATGCCAT
TTCAGGAAGAAGAGATTTGTAGCC
Found at i:6867527 original size:176 final size:175
Alignment explanation
Indices: 6867180--6867579 Score: 590
Period size: 176 Copynumber: 2.3 Consensus size: 175
6867170 CATTTCAAGA
* * *
6867180 AGAAGAGATTTGTAGCCTCGATCTACTCCGCTGAAACTTCAAGGAGATACGAACTGTGGCTTCGA
1 AGAAGAGATTTGTAGCCTCGATCTACTTCGATGAAACTTCAAGGAGATACGAACTATGGCTTCGA
6867245 GCCGCTCCAATGCCATTCAGGGAAAAGAGATTTGTAGCCTCGATCTACTCCACTGGAACTTCAAG
66 GCCGCTCCAATGCCATTCAGGGAAAAGAGATTTGTAGCCTCGATCTACTCCACTGGAACTTCAAG
* * *
6867310 GAGGTACGAACTGTGGCTTTGAGTAGCTCCAATTCCATTTTAGGG
131 GAGATACGAACTGTGGCTTCGAGTAGCTCCAATGCCATTTTAGGG
*
6867355 AGAAGAGATTTGTAGCCTCGATCTACTTTGATGAAACTTCAAGGAGATACGAACTATGGCTTCGA
1 AGAAGAGATTTGTAGCCTCGATCTACTTCGATGAAACTTCAAGGAGATACGAACTATGGCTTCGA
* * * * *
6867420 GCCGCTCCAATGCTATTTCAGGGAGAAA-AGATTTGTAGCTTCGATCTTCTTCGCTGGAACTTCA
66 GCCGCTCCAATGCCA-TTCAGGGA-AAAGAGATTTGTAGCCTCGATCTACTCCACTGGAACTTCA
6867484 AGGAGATACGAACTGTGGCTTCGAGCT-GCTCCAATGCCATTTTAGGG
129 AGGAGATACGAACTGTGGCTTCGAG-TAGCTCCAATGCCATTTTAGGG
* * * * *
6867531 AAAAGATATTTGCAGCTTCGATCTAC-TCCACTGAAACTTCAAGGAGATA
1 AGAAGAGATTTGTAGCCTCGATCTACTTCGA-TGAAACTTCAAGGAGATA
6867580 AGAATTGTTG
Statistics
Matches: 203, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
175 77 0.38
176 122 0.60
177 4 0.02
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.27
Consensus pattern (175 bp):
AGAAGAGATTTGTAGCCTCGATCTACTTCGATGAAACTTCAAGGAGATACGAACTATGGCTTCGA
GCCGCTCCAATGCCATTCAGGGAAAAGAGATTTGTAGCCTCGATCTACTCCACTGGAACTTCAAG
GAGATACGAACTGTGGCTTCGAGTAGCTCCAATGCCATTTTAGGG
Found at i:6867656 original size:42 final size:43
Alignment explanation
Indices: 6867601--6867713 Score: 138
Period size: 44 Copynumber: 2.6 Consensus size: 43
6867591 TTTCAACCTA
* *
6867601 CTCCACTACTGCTTAGGGAGATAGGA-TGATGGCTTAAATCTG
1 CTCCACTACTGCTTAGGGAGATAAGATTGATAGCTTAAATCTG
* * * * **
6867643 CTCCACTATTGCTTAAGGAGATAAGATTTGTTATCTTTGATCTG
1 CTCCACTACTGCTTAGGGAGATAAGA-TTGATAGCTTAAATCTG
6867687 CTCCACTACTGCTTAGGGAGATAAGAT
1 CTCCACTACTGCTTAGGGAGATAAGAT
6867714 CTACAATTTT
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 23 0.39
43 1 0.02
44 35 0.59
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33
Consensus pattern (43 bp):
CTCCACTACTGCTTAGGGAGATAAGATTGATAGCTTAAATCTG
Found at i:6867783 original size:88 final size:88
Alignment explanation
Indices: 6867675--6867902 Score: 287
Period size: 88 Copynumber: 2.6 Consensus size: 88
6867665 AAGATTTGTT
* * * * *
6867675 ATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTTAG-GCTGTTACCGTA
1 ATCTTCGATCTACTCTACTACTGCTTAGGGAGATAAGATCTACAATTTTCAGTG-TGTTACCCTA
* * * *
6867739 TTGCTTAAGGCGTTAAGGCTCGTC
65 CTACTTAAGGCGATAAGGCTCATC
* * *
6867763 ATCTTCGATCTACTCTACTACTTCTTAAGGAGATAAGATCTATAATTTTCAGTGTGTTACCCTAC
1 ATCTTCGATCTACTCTACTACTGCTTAGGGAGATAAGATCTACAATTTTCAGTGTGTTACCCTAC
*
6867828 TACTTAAGGGGATAAGGCTCATC
66 TACTTAAGGCGATAAGGCTCATC
* * **
6867851 GTCTTCGATCTACTCTGCTACTGCTTAGGGAGATAAGATCTGGAATTTTCAG
1 ATCTTCGATCTACTCTACTACTGCTTAGGGAGATAAGATCTACAATTTTCAG
6867903 CCTACTCCAC
Statistics
Matches: 120, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
88 119 0.99
89 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (88 bp):
ATCTTCGATCTACTCTACTACTGCTTAGGGAGATAAGATCTACAATTTTCAGTGTGTTACCCTAC
TACTTAAGGCGATAAGGCTCATC
Found at i:6868034 original size:131 final size:131
Alignment explanation
Indices: 6867875--6868151 Score: 455
Period size: 131 Copynumber: 2.1 Consensus size: 131
6867865 CTGCTACTGC
* *
6867875 TTAGGGAGATAAGATCTGGAATTTTCAGCCTACTCCACTACTGCTTAGGAAGATAGGATGGTGGC
1 TTAGGGAGACAAGATCTGGAATCTTCAGCCTACTCCACTACTGCTTAGGAAGATAGGATGGTGGC
* * * * *
6867940 TTAAATCTGCTCTACTACTGGTTAGGGAGATAAGATTCGCCATCTTCGATCTGTTCCACTGCAAC
66 TTAAATCTACTCCACTACTGGTTAGGGAGACAAGATTCGCCATCTTCGATCTATTCCACTACAAC
6868005 T
131 T
* *
6868006 TTAGGGAGACAAGATCTGTAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGC
1 TTAGGGAGACAAGATCTGGAATCTTCAGCCTACTCCACTACTGCTTAGGAAGATAGGATGGTGGC
* *
6868071 TTAAATCTACTCCACTACTGGTTAGGGAGACAAGATTCGCCGTCTTCGATCTATTCCACTATAAC
66 TTAAATCTACTCCACTACTGGTTAGGGAGACAAGATTCGCCATCTTCGATCTATTCCACTACAAC
6868136 T
131 T
6868137 TTAGGGAGACAAGAT
1 TTAGGGAGACAAGAT
6868152 TTGCAAATTC
Statistics
Matches: 135, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
131 135 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (131 bp):
TTAGGGAGACAAGATCTGGAATCTTCAGCCTACTCCACTACTGCTTAGGAAGATAGGATGGTGGC
TTAAATCTACTCCACTACTGGTTAGGGAGACAAGATTCGCCATCTTCGATCTATTCCACTACAAC
T
Found at i:6868085 original size:42 final size:43
Alignment explanation
Indices: 6867858--6868106 Score: 142
Period size: 42 Copynumber: 5.7 Consensus size: 43
6867848 ATCGTCTTCG
** * ** *
6867858 ATCTACTCTGCTACTGCTTAGGGAGATAAGATCTGGAATTTTCA
1 ATCTACTCCACTACTGCTTAGGGAGATAAGATC-GGTAGCTTAA
** * * *
6867902 GCCTACTCCACTACTGCTTAGGAAGATAGGAT-GGTGGCTTAA
1 ATCTACTCCACTACTGCTTAGGGAGATAAGATCGGTAGCTTAA
* * * ** * **
6867944 ATCTGCTCTACTACTGGTTAGGGAGATAAGATTCGCCATCTTCG
1 ATCTACTCCACTACTGCTTAGGGAGATAAGA-TCGGTAGCTTAA
** * ** * * * *
6867988 ATCTGTTCCACTGCAACTTTAGGGAGACAAGATCTGTAATCTTCA
1 ATCTACTCCACTACTGC-TTAGGGAGATAAGATCGGT-AGCTTAA
** * *
6868033 GCCTACTCCACTACTGCTTAGGGAGATAGGAT-GGTGGCTTAA
1 ATCTACTCCACTACTGCTTAGGGAGATAAGATCGGTAGCTTAA
* *
6868075 ATCTACTCCACTACTGGTTAGGGAGACAAGAT
1 ATCTACTCCACTACTGCTTAGGGAGATAAGAT
6868107 TCGCCGTCTT
Statistics
Matches: 148, Mismatches: 53, Indels: 10
0.70 0.25 0.05
Matches are distributed among these distances:
42 60 0.41
43 3 0.02
44 56 0.38
45 29 0.20
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (43 bp):
ATCTACTCCACTACTGCTTAGGGAGATAAGATCGGTAGCTTAA
Found at i:6868322 original size:64 final size:64
Alignment explanation
Indices: 6868221--6868348 Score: 238
Period size: 64 Copynumber: 2.0 Consensus size: 64
6868211 TCATGTATCT
6868221 ATGCTTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
**
6868285 ATGCTTATGTTAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
6868349 TTATGAATGA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:6872706 original size:9 final size:10
Alignment explanation
Indices: 6872693--6872738 Score: 53
Period size: 9 Copynumber: 4.8 Consensus size: 10
6872683 AGGAAAGTCT
6872693 AATGCAAAT-
1 AATGCAAATG
6872702 AATGC-AATG
1 AATGCAAATG
6872711 CAATGCAAATG
1 -AATGCAAATG
*
6872722 AATG-GAATG
1 AATGCAAATG
6872731 AATGCAAA
1 AATGCAAA
6872739 AGAAAGAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
8 3 0.10
9 13 0.42
10 11 0.35
11 4 0.13
ACGTcount: A:0.50, C:0.11, G:0.20, T:0.20
Consensus pattern (10 bp):
AATGCAAATG
Found at i:6872717 original size:19 final size:19
Alignment explanation
Indices: 6872693--6872738 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
6872683 AGGAAAGTCT
6872693 AATGCAAAT-AATGCAATG
1 AATGCAAATGAATGCAATG
*
6872711 CAATGCAAATGAATGGAATG
1 -AATGCAAATGAATGCAATG
6872731 AATGCAAA
1 AATGCAAA
6872739 AGAAAGAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.50, C:0.11, G:0.20, T:0.20
Consensus pattern (19 bp):
AATGCAAATGAATGCAATG
Found at i:6875085 original size:3 final size:3
Alignment explanation
Indices: 6875079--6875219 Score: 128
Period size: 3 Copynumber: 47.7 Consensus size: 3
6875069 GGAAAACAAT
* * * * * * *
6875079 ATA ATA ATA ATA ATA GTG GTA AT- ACA ATA GTA ATA CTA ATA ATA ACA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
6875126 A-A ATA GA-G ATA ATA ATA GTG ATGA A-A ATA ATA ATA ATA ATA ATA
1 ATA ATA -ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA
* *
6875170 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA GTT ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6875218 AT
1 AT
6875220 GAACATATAT
Statistics
Matches: 111, Mismatches: 21, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
2 6 0.05
3 103 0.93
4 2 0.02
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:6878711 original size:24 final size:23
Alignment explanation
Indices: 6878683--6878741 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
6878673 AAACATCTTT
*
6878683 TATTTTTTTATTACA-AATTTTAA
1 TATTTTTTTATTACATAA-GTTAA
* *
6878706 TCATTTTTTTCTTTCATAAGTTAA
1 T-ATTTTTTTATTACATAAGTTAA
6878730 TATTTTTTTATT
1 TATTTTTTTATT
6878742 TTTGTGCAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
23 11 0.37
24 17 0.57
25 2 0.07
ACGTcount: A:0.27, C:0.07, G:0.02, T:0.64
Consensus pattern (23 bp):
TATTTTTTTATTACATAAGTTAA
Found at i:6880513 original size:15 final size:16
Alignment explanation
Indices: 6880490--6880524 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
6880480 CCAATCATAA
*
6880490 TTAATTTAATTAAAAT
1 TTAATTTAATAAAAAT
6880506 TTAA-TTAATAAAAAT
1 TTAATTTAATAAAAAT
6880521 TTAA
1 TTAA
6880525 GCTTAATTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
TTAATTTAATAAAAAT
Found at i:6881017 original size:10 final size:10
Alignment explanation
Indices: 6881002--6881061 Score: 79
Period size: 10 Copynumber: 6.0 Consensus size: 10
6880992 TAATTCTAGG
6881002 ATTTAT-TTT
1 ATTTATCTTT
6881011 CATTTATCTTT
1 -ATTTATCTTT
6881022 ATTTATCTTT
1 ATTTATCTTT
*
6881032 AATTATCTTT
1 ATTTATCTTT
6881042 ATTTAT-TTAT
1 ATTTATCTT-T
6881052 ATTTATCTTT
1 ATTTATCTTT
6881062 TAGAATTTCA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:6881817 original size:17 final size:18
Alignment explanation
Indices: 6881784--6881817 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
6881774 TATTCCTCAT
*
6881784 TTTAATTTCTGCAATTTA
1 TTTAATTTCTACAATTTA
6881802 TTTAATTTC-ACAATTT
1 TTTAATTTCTACAATTT
6881818 CAATTCACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.12, G:0.03, T:0.56
Consensus pattern (18 bp):
TTTAATTTCTACAATTTA
Found at i:6888401 original size:9 final size:8
Alignment explanation
Indices: 6888373--6888399 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
6888363 AAATAGAATT
6888373 AAAGAAAA
1 AAAGAAAA
6888381 AAAGAAAA
1 AAAGAAAA
6888389 AAAGAAAA
1 AAAGAAAA
6888397 AAA
1 AAA
6888400 AGGAGGTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (8 bp):
AAAGAAAA
Found at i:6889037 original size:10 final size:10
Alignment explanation
Indices: 6889022--6889063 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
6889012 TAATTTTAGG
6889022 ATTTATTTTT
1 ATTTATTTTT
*
6889032 ATTTATCTTT
1 ATTTATTTTT
*
6889042 ATTTATTTGT
1 ATTTATTTTT
6889052 ATTTATCTTTT
1 ATTTAT-TTTT
6889063 A
1 A
6889064 GAATTTAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
10 23 0.85
11 4 0.15
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.71
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:6889047 original size:20 final size:20
Alignment explanation
Indices: 6889022--6889061 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
6889012 TAATTTTAGG
*
6889022 ATTTATTTTTATTTATCTTT
1 ATTTATTTGTATTTATCTTT
6889042 ATTTATTTGTATTTATCTTT
1 ATTTATTTGTATTTATCTTT
6889062 TAGAATTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.20, C:0.05, G:0.03, T:0.72
Consensus pattern (20 bp):
ATTTATTTGTATTTATCTTT
Found at i:6891914 original size:101 final size:102
Alignment explanation
Indices: 6891801--6892004 Score: 365
Period size: 102 Copynumber: 2.0 Consensus size: 102
6891791 TGTGTATACG
* *
6891801 TGTAGAGGCTGACATCACATATAAA-CCAAAATAATAATTAAGTGCTGTAAAATGTCAAACAGTT
1 TGTAGAGGCTGACATCACATATAAACCCAAAATAATAATTAAGTGCTATAAAATGTCAAACACTT
*
6891865 CATCTGGAAAACATAATCAAACACTTCATTATACCCT
66 CATCTGGAAAAAATAATCAAACACTTCATTATACCCT
*
6891902 TGTAGTGGCTGACATCACATATAAACCCAAAATAATAATTAAGTGCTATAAAATGTCAAACACTT
1 TGTAGAGGCTGACATCACATATAAACCCAAAATAATAATTAAGTGCTATAAAATGTCAAACACTT
6891967 CATCTGGAAAAAATAATCAAACACTTCATTATACCCT
66 CATCTGGAAAAAATAATCAAACACTTCATTATACCCT
6892004 T
1 T
6892005 AACATAATCA
Statistics
Matches: 98, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
101 24 0.24
102 74 0.76
ACGTcount: A:0.43, C:0.19, G:0.11, T:0.27
Consensus pattern (102 bp):
TGTAGAGGCTGACATCACATATAAACCCAAAATAATAATTAAGTGCTATAAAATGTCAAACACTT
CATCTGGAAAAAATAATCAAACACTTCATTATACCCT
Found at i:6899133 original size:15 final size:15
Alignment explanation
Indices: 6899113--6899144 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
6899103 TTGTTTTGAT
6899113 TATATATTTCGTCTC
1 TATATATTTCGTCTC
6899128 TATATATTTCGTCTC
1 TATATATTTCGTCTC
6899143 TA
1 TA
6899145 ACTCTTAGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.22, C:0.19, G:0.06, T:0.53
Consensus pattern (15 bp):
TATATATTTCGTCTC
Found at i:6902425 original size:32 final size:32
Alignment explanation
Indices: 6902384--6902457 Score: 148
Period size: 32 Copynumber: 2.3 Consensus size: 32
6902374 TCCAAGCTGT
6902384 TAAATCAGCTTAAAGACAACCTAAAAGACTAC
1 TAAATCAGCTTAAAGACAACCTAAAAGACTAC
6902416 TAAATCAGCTTAAAGACAACCTAAAAGACTAC
1 TAAATCAGCTTAAAGACAACCTAAAAGACTAC
6902448 TAAATCAGCT
1 TAAATCAGCT
6902458 AACTACACGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.49, C:0.22, G:0.09, T:0.20
Consensus pattern (32 bp):
TAAATCAGCTTAAAGACAACCTAAAAGACTAC
Found at i:6902656 original size:30 final size:30
Alignment explanation
Indices: 6902586--6902661 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
6902576 TGCTGCTGAA
* *
6902586 CTGCTGCATTTTGGCCGAGTTACTTACATG
1 CTGCTACATTGTGGCCGAGTTACTTACATG
* * * *
6902616 TTGC-AGCATTGTGGCTGGGTTACTTGCATG
1 CTGCTA-CATTGTGGCCGAGTTACTTACATG
6902646 CTGCTACATTGTGGCC
1 CTGCTACATTGTGGCC
6902662 ACCTTTCAAC
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
30 35 0.97
31 1 0.03
ACGTcount: A:0.14, C:0.22, G:0.28, T:0.36
Consensus pattern (30 bp):
CTGCTACATTGTGGCCGAGTTACTTACATG
Found at i:6907289 original size:34 final size:33
Alignment explanation
Indices: 6907251--6907337 Score: 106
Period size: 32 Copynumber: 2.6 Consensus size: 33
6907241 TATTATGGTA
*
6907251 TATATATTATTTATATTTTATTAATAAATTTTTT
1 TATATATTA-TTATATTTTATTAATAAAATTTTT
**
6907285 TATATATGTATTATA-AATA-TAATAAAATTTTT
1 TATATAT-TATTATATTTTATTAATAAAATTTTT
6907317 TATATATTATTATATTATTAT
1 TATATATTATTATATT-TTAT
6907338 ATGTTTCCCA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
31 7 0.16
32 19 0.43
33 4 0.09
34 12 0.27
35 2 0.05
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (33 bp):
TATATATTATTATATTTTATTAATAAAATTTTT
Found at i:6907659 original size:8 final size:9
Alignment explanation
Indices: 6907640--6907699 Score: 52
Period size: 9 Copynumber: 6.2 Consensus size: 9
6907630 TACATGCATT
6907640 TTATTATATA
1 TTATT-TATA
6907650 TT-TTTATA
1 TTATTTATA
6907658 TTATTTATTA
1 TTATTTA-TA
6907668 TATGATTTATA
1 T-T-ATTTATA
6907679 TTATTTA-A
1 TTATTTATA
6907687 TTTATATTATA
1 -TTAT-TTATA
6907698 TT
1 TT
6907700 TTACTATATT
Statistics
Matches: 43, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
8 7 0.16
9 15 0.35
10 11 0.26
11 5 0.12
12 5 0.12
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (9 bp):
TTATTTATA
Found at i:6907668 original size:12 final size:12
Alignment explanation
Indices: 6907639--6907677 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
6907629 CTACATGCAT
6907639 TTTATTATA-TA
1 TTTATTATATTA
6907650 TTT-TTATATTA
1 TTTATTATATTA
*
6907661 TTTATTATATGA
1 TTTATTATATTA
6907673 TTTAT
1 TTTAT
6907678 ATTATTTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
10 5 0.20
11 8 0.32
12 12 0.48
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (12 bp):
TTTATTATATTA
Found at i:6907678 original size:21 final size:21
Alignment explanation
Indices: 6907639--6907694 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 21
6907629 CTACATGCAT
6907639 TTTATTATATATTTTTATATTA
1 TTTATTATATA-TTTTATATTA
6907661 TTTATTATATGA-TTTATATTA
1 TTTATTATAT-ATTTTATATTA
6907682 TTTAATT-TATATT
1 TTT-ATTATATATT
6907695 ATATTTTACT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
20 1 0.03
21 16 0.52
22 13 0.42
23 1 0.03
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (21 bp):
TTTATTATATATTTTATATTA
Done.