Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 260 of 444
Found at i:74302818 original size:7 final size:6
Alignment explanation
Indices: 74302647--74302824 Score: 95
Period size: 5 Copynumber: 30.3 Consensus size: 6
74302637 ATATGTAAAA
74302647 ATTATT A-TATAT ATT-TT -TTATTT ATGTATT ATTTATT A-TATT ATT-TAT
1 ATTATT ATTAT-T ATTATT ATTA-TT AT-TATT A-TTATT ATTATT ATTAT-T
74302695 ATT-TT ATTATAT ATT-TT ATTA-T ATT-TT ATTTATAT ATT-TT ATTATAT
1 ATTATT ATTAT-T ATTATT ATTATT ATTATT A-TTAT-T ATTATT ATTAT-T
*
74302742 ATCATT -TTATT A-TATAT ATTATT CATTA-T ATT-TT -TTATT ATTA-T
1 ATTATT ATTATT ATTAT-T ATTATT -ATTATT ATTATT ATTATT ATTATT
74302786 ATATATT A-TATT A-TATT ATTATTT ATTACTT ATTATT AT
1 AT-TATT ATTATT ATTATT ATTA-TT ATTA-TT ATTATT AT
74302825 GTATAATTTT
Statistics
Matches: 140, Mismatches: 3, Indels: 58
0.70 0.01 0.29
Matches are distributed among these distances:
4 4 0.03
5 54 0.39
6 34 0.24
7 43 0.31
8 5 0.04
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.65
Consensus pattern (6 bp):
ATTATT
Found at i:74302834 original size:100 final size:100
Alignment explanation
Indices: 74302648--74302834 Score: 240
Period size: 100 Copynumber: 1.9 Consensus size: 100
74302638 TATGTAAAAA
* * *
74302648 TTATTATATATATTTTTTATTTATGTATTATTTATTATATTATTTATATTTTATTATATATTTTA
1 TTATTATATATATTATTCATTTATGTATTATTTATTATATTATTTATATTATATTATATATTTTA
*
74302713 TTATATTTTATTTATATATTTTATTATATATCATT
66 TTATATTTTATGTATATATTTTATTATATATCATT
* *
74302748 TTATTATATATATTATTCATTATATTTTTTA-TTATTATA-TATATTATATTATATTAT-TA-TT
1 TTATTATATATATTATTCATT-TATGTATTATTTATTATATTAT-TTATATTATATTATATATTT
74302809 TATTACTTATTATTATGTATA-ATTTT
64 TATTA--TATT-TTATGTATATATTTT
74302835 TAAAAATTTT
Statistics
Matches: 76, Mismatches: 6, Indels: 10
0.83 0.07 0.11
Matches are distributed among these distances:
98 7 0.09
99 5 0.07
100 49 0.64
101 15 0.20
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (100 bp):
TTATTATATATATTATTCATTTATGTATTATTTATTATATTATTTATATTATATTATATATTTTA
TTATATTTTATGTATATATTTTATTATATATCATT
Found at i:74304204 original size:9 final size:9
Alignment explanation
Indices: 74304186--74304222 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
74304176 TATAGTTTGA
*
74304186 TATTCAAAT
1 TATTCGAAT
74304195 TATTCGAAT
1 TATTCGAAT
*
74304204 TATTCGAGT
1 TATTCGAAT
74304213 TATTCGAAT
1 TATTCGAAT
74304222 T
1 T
74304223 CAAAAACTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:74312824 original size:44 final size:46
Alignment explanation
Indices: 74312712--74312838 Score: 118
Period size: 44 Copynumber: 2.8 Consensus size: 46
74312702 AAAATTTGTA
* * * *
74312712 GCTTCAATCTGCTCCATTGCAACTTCAGGGAGA-TAAGATTCACTG
1 GCTTCAATCTGCTCCACTGCAACTTTAGGAAGATTAAGACTCACTG
* * ** * **
74312757 TCTTCAGTCTGCTCTGCTACAACTTTAGGAAGATTAAG-CT-GGTG
1 GCTTCAATCTGCTCCACTGCAACTTTAGGAAGATTAAGACTCACTG
*
74312801 GCTTCAATCTGCTCCACTGCAACTTTAGAAAGA-TAAGA
1 GCTTCAATCTGCTCCACTGCAACTTTAGGAAGATTAAGA
74312839 TCCGCCATAA
Statistics
Matches: 63, Mismatches: 17, Indels: 5
0.74 0.20 0.06
Matches are distributed among these distances:
43 4 0.06
44 29 0.46
45 26 0.41
46 4 0.06
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (46 bp):
GCTTCAATCTGCTCCACTGCAACTTTAGGAAGATTAAGACTCACTG
Found at i:74312834 original size:143 final size:141
Alignment explanation
Indices: 74312570--74312971 Score: 483
Period size: 143 Copynumber: 2.9 Consensus size: 141
74312560 GGTTTGCGAC
* * *
74312570 TTGTAGCTTCAATTTGTTCCGCTGTAACTTCAGGGAAATAAGATT-C-G-C-T-AGTCTGCTCCG
1 TTGTAGCTTCAATCTGTTCCGCTGCAACTTCAGGG-AATAAGATTCCTGTCTTCAGTCTGCTCTG
* * * * *
74312630 CTGCAACTTTAGGGAGATAAGGCTGGTGGCTTAAATCTACTCTACTGCAGCTTCAGGAAGATAAG
65 CTACAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTTCAGAAAGATAAG
*
74312695 ATTAGCCAAAAT
130 ATCAGCCAAAAT
* **
74312707 TTGTAGCTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATTCACTGTCTTCAGTCTGCTCT
1 TTGTAGCTTCAATCTGTTCCGCTGCAACTTCAGGGA-ATAAGATTC-CTGTCTTCAGTCTGCTCT
* * *
74312772 GCTACAACTTTAGGAAGATTAA-GCTGGTGGCTTCAATCTGCTCCACTGCAACTTTAGAAAGATA
64 GCTACAACTTTAGGGAGA-TAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTTCAGAAAGATA
* *
74312836 AGATCCGCCATAAT
128 AGATCAGCCAAAAT
* * * * *
74312850 TTGTGGCTTTAATCTGTTCTGCTGCAACGTCAGGGAATTAAGATTCGTTGTCTTCAGTCTGCTCT
1 TTGTAGCTTCAATCTGTTCCGCTGCAACTTCAGGGAA-TAAGATTC-CTGTCTTCAGTCTGCTCT
* * *
74312915 GCTATAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTTCACTGCAACTTCAG
64 GCTACAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTTCAG
74312972 GGAGATGAGA
Statistics
Matches: 223, Mismatches: 32, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
136 1 0.00
137 38 0.17
139 1 0.00
140 1 0.00
141 1 0.00
142 5 0.02
143 173 0.78
144 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (141 bp):
TTGTAGCTTCAATCTGTTCCGCTGCAACTTCAGGGAATAAGATTCCTGTCTTCAGTCTGCTCTGC
TACAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTTCAGAAAGATAAGA
TCAGCCAAAAT
Found at i:74313471 original size:47 final size:46
Alignment explanation
Indices: 74313335--74313473 Score: 197
Period size: 46 Copynumber: 3.0 Consensus size: 46
74313325 AAAATTTAGT
* * *
74313335 TTCTTCCATCCATCCTACTGCAACTCAAGGGTATAGGATTTGTATC
1 TTCTTCAATCCATCCAACTGCAACTCAGGGGTATAGGATTTGTATC
* * * *
74313381 ATCTTCAGTCCATCCCACTGTAACTCAGGGGTATAGGATTTGTATC
1 TTCTTCAATCCATCCAACTGCAACTCAGGGGTATAGGATTTGTATC
*
74313427 TTCTTCAATCCATTCCAATTGCAACTCAGGGGTATAGGATTTGTATC
1 TTCTTCAATCCA-TCCAACTGCAACTCAGGGGTATAGGATTTGTATC
74313474 CCAATGCAAT
Statistics
Matches: 81, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
46 50 0.62
47 31 0.38
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (46 bp):
TTCTTCAATCCATCCAACTGCAACTCAGGGGTATAGGATTTGTATC
Found at i:74313983 original size:53 final size:53
Alignment explanation
Indices: 74313920--74314023 Score: 172
Period size: 53 Copynumber: 2.0 Consensus size: 53
74313910 GGGAGCATAG
*
74313920 CTCGAAATGAATAAATTAATCAAAGATAGCAAATGCAATAAGAAGGAAATTAA
1 CTCGAAATGAATAAATTAATCAAAGATAGCAAATGCAATAAAAAGGAAATTAA
* * *
74313973 CTCGAAATGAATAAGTTAATCAATGATAGCAAATGTAATAAAAAGGAAATT
1 CTCGAAATGAATAAATTAATCAAAGATAGCAAATGCAATAAAAAGGAAATT
74314024 GATTAGGAGC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.53, C:0.09, G:0.15, T:0.23
Consensus pattern (53 bp):
CTCGAAATGAATAAATTAATCAAAGATAGCAAATGCAATAAAAAGGAAATTAA
Found at i:74315790 original size:18 final size:18
Alignment explanation
Indices: 74315767--74315802 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
74315757 ATCATGAATG
74315767 AAAAATAAAAGAATATTT
1 AAAAATAAAAGAATATTT
74315785 AAAAATAAAAGAATATTT
1 AAAAATAAAAGAATATTT
74315803 GAAAGAATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.28
Consensus pattern (18 bp):
AAAAATAAAAGAATATTT
Found at i:74317901 original size:24 final size:24
Alignment explanation
Indices: 74317863--74317911 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
74317853 CATATTGTTG
* *
74317863 TTGCATTTATGTTTGCAGTTGCTC
1 TTGCATTTATGTTTGAAGCTGCTC
* *
74317887 TTGCATTTCTTTTTGAAGCTGCTC
1 TTGCATTTATGTTTGAAGCTGCTC
74317911 T
1 T
74317912 AGCCTTTCCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.12, C:0.18, G:0.18, T:0.51
Consensus pattern (24 bp):
TTGCATTTATGTTTGAAGCTGCTC
Found at i:74320237 original size:13 final size:13
Alignment explanation
Indices: 74320219--74320243 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74320209 GGACTAAATA
74320219 AATAAAAAATAAT
1 AATAAAAAATAAT
74320232 AATAAAAAATAA
1 AATAAAAAATAA
74320244 AACTGTTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AATAAAAAATAAT
Found at i:74321378 original size:17 final size:17
Alignment explanation
Indices: 74321345--74321380 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
74321335 GTTATAGTTC
**
74321345 GGTTTAGGGTTTGTTTG
1 GGTTTAGGGTTAATTTG
74321362 GGTTTAGGGTTAATTTG
1 GGTTTAGGGTTAATTTG
74321379 GG
1 GG
74321381 CCTTTTTGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.11, C:0.00, G:0.42, T:0.47
Consensus pattern (17 bp):
GGTTTAGGGTTAATTTG
Found at i:74327676 original size:37 final size:37
Alignment explanation
Indices: 74327613--74327755 Score: 241
Period size: 37 Copynumber: 3.9 Consensus size: 37
74327603 TTTAGCTCGA
* * *
74327613 ATAATCCCCACACGTAGTTATTGGGTCTTACCCGGAC
1 ATAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
*
74327650 AAAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
1 ATAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
*
74327687 ATAATCTCCACACGTAGTCATCGGGTCTTACCAGGAC
1 ATAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
74327724 ATAATCTCCACACGTAGTCATCGGGTCTTACC
1 ATAATCTCCACACGTAGTCATCGGGTCTTACC
74327756 TGGAATATAT
Statistics
Matches: 100, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (37 bp):
ATAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
Found at i:74327958 original size:48 final size:48
Alignment explanation
Indices: 74327896--74328132 Score: 366
Period size: 48 Copynumber: 4.9 Consensus size: 48
74327886 CACAATATAC
* *
74327896 ACACATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATAT
1 ACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
* *
74327944 ACACATCTCATACATATTTCACACTAGCCATTCGGATTTACCACATAT
1 ACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
* *
74327992 ATAGATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
1 ACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
* * *
74328040 ATATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATAT
1 ACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
* * *
74328088 ACATATCTCATACATATTTCACACTAGTCATTCGGCTTTACCACA
1 ACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
74328133 CATATATATA
Statistics
Matches: 175, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 175 1.00
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
ACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
Found at i:74338260 original size:47 final size:46
Alignment explanation
Indices: 74338148--74338415 Score: 177
Period size: 47 Copynumber: 5.7 Consensus size: 46
74338138 AATTTCTTGT
* * * ** *
74338148 GTGCCAGTGTAAGACATGTCTGGGACATGCAACGGCCACATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCAGACACAAGACGA
* *
74338194 GTGCTAGTATAAGACCATGTCTGGGACATGGCATC-GACACAGAGACGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGACACA-AGACGA
* * * *
74338242 GTGCCAGTGTAAGACATGTCTAGGACATGCATCAGCCTCAACGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCAGACACAA-GACGA
** ** * * *
74338289 -TAGCCAGTGTAAGATGTGTCTGGGACACACATC-GGC-TAAGA-GTT
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCAGACACAAGACG-A
* * * *
74338333 GTGCTACTGTAAGACATGTCTGGGACATGCATCAGCACATATATACGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCAG-ACACA-AGACGA
* * *
74338381 GAGCTAGTATAAGACCATGTCTGGGACATGGCATC
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
74338416 GGCAACTTAT
Statistics
Matches: 174, Mismatches: 33, Indels: 26
0.75 0.14 0.11
Matches are distributed among these distances:
43 1 0.01
44 27 0.16
45 4 0.02
46 22 0.13
47 68 0.39
48 32 0.18
49 15 0.09
50 5 0.03
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.22
Consensus pattern (46 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCAGACACAAGACGA
Found at i:74340622 original size:75 final size:75
Alignment explanation
Indices: 74340499--74340827 Score: 342
Period size: 75 Copynumber: 4.4 Consensus size: 75
74340489 GTGAAAGAGA
* * * * * * *
74340499 TTGCACCCAGCGCTAGTCGGATTAACTGACAGTT-TTGAATATGAGCCCAGCTCTAATTGGATAA
1 TTGCACCCAGTGCTAGTCGGATTAACCGATA-TTATTGAATGTGAGCCCAGCTCTAGTCGAATAA
74340563 ACCAACGATAT
65 ACCAACGATAT
* *
74340574 TTGCACCCAGTGCTAGTCGGATTAACCGATATTATTGAATGTGAGCCCAGCTCTAGTTGGATAAA
1 TTGCACCCAGTGCTAGTCGGATTAACCGATATTATTGAATGTGAGCCCAGCTCTAGTCGAATAAA
*
74340639 CCAATGATAT
66 CCAACGATAT
* * * * * * * *
74340649 TCGCACCCAATGCTAGTCGGATTAGCTGATAGTATTGAATGTGAACCCAACTCTAGTCGAATATA
1 TTGCACCCAGTGCTAGTCGGATTAACCGATATTATTGAATGTGAGCCCAGCTCTAGTCGAATAAA
74340714 CCAACGATAT
66 CCAACGATAT
* * * * *
74340724 TTGCACCCAGTGCTAGTCGG-GTATACCAACGATTA-T-AATTGTGAGCCCAGCGCTAGTCAAAT
1 TTGCACCCAGTGCTAGTCGGATTA-ACCGA-TATTATTGAA-TGTGAGCCCAGCTCTAGTCGAAT
* *
74340786 AAACCAATGATAA
63 AAACCAACGATAT
* * *
74340799 TTGCATCCAGCGCTAGTCGGATAAACCGA
1 TTGCACCCAGTGCTAGTCGGATTAACCGA
74340828 CAGTTGTGTG
Statistics
Matches: 212, Mismatches: 37, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
74 6 0.03
75 202 0.95
76 4 0.02
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.26
Consensus pattern (75 bp):
TTGCACCCAGTGCTAGTCGGATTAACCGATATTATTGAATGTGAGCCCAGCTCTAGTCGAATAAA
CCAACGATAT
Found at i:74340740 original size:35 final size:35
Alignment explanation
Indices: 74340701--74340817 Score: 108
Period size: 35 Copynumber: 3.2 Consensus size: 35
74340691 GAACCCAACT
*
74340701 CTAGTCGAATATACCAACGATATTTGCACCCAGTG
1 CTAGTCGAATATACCAACGATATTTGCACCCAGCG
** *
74340736 CTAGTCGGGTATACCAACGATTATAATTGTGAGCCCAGCG
1 CTAGTCGAATATACCAACGA-TAT--TTG-CA-CCCAGCG
* * * * *
74340776 CTAGTCAAATAAACCAATGATAATTGCATCCAGCG
1 CTAGTCGAATATACCAACGATATTTGCACCCAGCG
74340811 CTAGTCG
1 CTAGTCG
74340818 GATAAACCGA
Statistics
Matches: 64, Mismatches: 13, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
35 30 0.47
36 4 0.06
37 3 0.05
38 3 0.05
39 3 0.05
40 21 0.33
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.25
Consensus pattern (35 bp):
CTAGTCGAATATACCAACGATATTTGCACCCAGCG
Found at i:74340772 original size:150 final size:150
Alignment explanation
Indices: 74340498--74340831 Score: 406
Period size: 150 Copynumber: 2.2 Consensus size: 150
74340488 CGTGAAAGAG
* * * * *
74340498 ATTGCACCCAGCGCTAGTCGGATTAACTGACAGTTTTGAATATGAGCCCAGCTCTAATTGGATAA
1 ATTGCACCCAGCGCTAGTCGGATTAACTGACAGTATTGAATATGAACCCAACTCTAATCGAATAA
* * *
74340563 ACCAACGATATTTGCACCCAGTGCTAGTCGGATTAACCGATATTATTGAATGTGAGCCCAGCTCT
66 ACCAACGATATTTGCACCCAGTGCTAGTCGGATTAACCAAGATTATTGAATGTGAGCCCAGCGCT
***
74340628 AGTTGGATAAACCAATGAT-
131 AGTCAAATAAACCAATGATA
** * * * *
74340647 ATTCGCACCCAATGCTAGTCGGATTAGCTGATAGTATTGAATGTGAACCCAACTCTAGTCGAATA
1 ATT-GCACCCAGCGCTAGTCGGATTAACTGACAGTATTGAATATGAACCCAACTCTAATCGAATA
* *
74340712 TACCAACGATATTTGCACCCAGTGCTAGTCGG-GTATACCAACGATTA-T-AATTGTGAGCCCAG
65 AACCAACGATATTTGCACCCAGTGCTAGTCGGATTA-ACCAA-GATTATTGAA-TGTGAGCCCAG
74340774 CGCTAGTCAAATAAACCAATGATA
127 CGCTAGTCAAATAAACCAATGATA
* * *
74340798 ATTGCATCCAGCGCTAGTCGGATAAACCGACAGT
1 ATTGCACCCAGCGCTAGTCGGATTAACTGACAGT
74340832 TGTGTGCCGA
Statistics
Matches: 154, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
149 7 0.05
150 140 0.91
151 7 0.05
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.26
Consensus pattern (150 bp):
ATTGCACCCAGCGCTAGTCGGATTAACTGACAGTATTGAATATGAACCCAACTCTAATCGAATAA
ACCAACGATATTTGCACCCAGTGCTAGTCGGATTAACCAAGATTATTGAATGTGAGCCCAGCGCT
AGTCAAATAAACCAATGATA
Found at i:74348004 original size:14 final size:15
Alignment explanation
Indices: 74347987--74348020 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
74347977 ATCATTATAT
74347987 TTTAAGGAT-TATGG
1 TTTAAGGATATATGG
74348001 TTTAA-GATATATGG
1 TTTAAGGATATATGG
74348015 TTTAAG
1 TTTAAG
74348021 CAGGTTCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 3 0.17
14 15 0.83
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (15 bp):
TTTAAGGATATATGG
Found at i:74348927 original size:15 final size:15
Alignment explanation
Indices: 74348907--74348938 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
74348897 TTTATTTTAG
*
74348907 AAGATAAATGTATAT
1 AAGATAAATATATAT
74348922 AAGATAAATATATAT
1 AAGATAAATATATAT
74348937 AA
1 AA
74348939 AATATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:74349582 original size:199 final size:198
Alignment explanation
Indices: 74349265--74349676 Score: 788
Period size: 199 Copynumber: 2.1 Consensus size: 198
74349255 GTTTATACAT
74349265 AAAACGCCGCAAAAGATAGAAAATAGCGGCGTTTTTTAGAAAACGCCACAAAATTTCATTATACA
1 AAAACGCCGCAAAAGATAGAAAATAGCGGCGTTTTTTAGAAAACGCCACAAAATTTCATTATACA
74349330 TTACAGTAAAACGGCATCGTTTCCTCAGAATAGTAGTGGCTTTAGCGGCGTTTCTATAATAAACG
66 TTACAGTAAAACGGCATCGTTTCCTCAGAATAGTAGTGGCTTTAGCGGCGTTTCTATAATAAACG
74349395 CCACAACGCGTATTAGAACGGCGTCGTTTTATTGTGTATATAAAATAGGTATTAGTGGCGCTTTG
131 CCACAACGCGTATTAGAACGGCGTCGTTTTATTGTGTATATAAAATAGGTATTAGTGGCGCTTTG
74349460 CTG
196 CTG
* *
74349463 AAAACACCGCAAAAGATAGAAAGTAGCGGCGTTTTTTTAGAAAACGCCACAAAATTTCATTATAC
1 AAAACGCCGCAAAAGATAGAAAATAGCGGCG-TTTTTTAGAAAACGCCACAAAATTTCATTATAC
*
74349528 ATTACAGTAAAACGGCGTCGTTTCCTCAGAATAGTAGTGGCTTTAGCGGCGTTTCTATAATAAAC
65 ATTACAGTAAAACGGCATCGTTTCCTCAGAATAGTAGTGGCTTTAGCGGCGTTTCTATAATAAAC
74349593 GCCACAACGCGTATTAGAACGGCGTCGTTTTATTGTGTATATAAAATAGGTATTAGTGGCGCTTT
130 GCCACAACGCGTATTAGAACGGCGTCGTTTTATTGTGTATATAAAATAGGTATTAGTGGCGCTTT
74349658 GCTG
195 GCTG
74349662 AAAACGCCGCAAAAG
1 AAAACGCCGCAAAAG
74349677 GTCTTATTAG
Statistics
Matches: 209, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
198 29 0.14
199 180 0.86
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (198 bp):
AAAACGCCGCAAAAGATAGAAAATAGCGGCGTTTTTTAGAAAACGCCACAAAATTTCATTATACA
TTACAGTAAAACGGCATCGTTTCCTCAGAATAGTAGTGGCTTTAGCGGCGTTTCTATAATAAACG
CCACAACGCGTATTAGAACGGCGTCGTTTTATTGTGTATATAAAATAGGTATTAGTGGCGCTTTG
CTG
Found at i:74352134 original size:134 final size:133
Alignment explanation
Indices: 74351914--74352163 Score: 464
Period size: 134 Copynumber: 1.9 Consensus size: 133
74351904 TGATTCCATC
*
74351914 TTGGTTATTTAGACGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTGTGG
1 TTGGTTATTCAGACGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTGTGG
74351979 ACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGTTAT
66 ACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGTTAT
74352044 ATT
131 ATT
* *
74352047 TTGGTTATTCAGATGTTCTTTTGGTCTGTTTTTCATGTTTCTATCCAACTTATGTGTTTAGTGTG
1 TTGGTTATTCAGACGTTATTTTGGTCTG-TTTTCATGTTTCTATCCAACTTATGTGTTTAGTGTG
74352112 GACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
65 GACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
74352164 TGTTGAATTC
Statistics
Matches: 113, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
133 25 0.22
134 88 0.78
ACGTcount: A:0.20, C:0.11, G:0.19, T:0.51
Consensus pattern (133 bp):
TTGGTTATTCAGACGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTGTGG
ACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGTTAT
ATT
Found at i:74354253 original size:21 final size:21
Alignment explanation
Indices: 74354224--74354263 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
74354214 GTTTTTATAT
*
74354224 TTTGGTTCAACTTAAGTATTA
1 TTTGATTCAACTTAAGTATTA
74354245 TTTGATTCAACTTAAGTAT
1 TTTGATTCAACTTAAGTAT
74354264 GAATTAGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.47
Consensus pattern (21 bp):
TTTGATTCAACTTAAGTATTA
Found at i:74355908 original size:15 final size:15
Alignment explanation
Indices: 74355864--74355919 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
74355854 ACAAATATGT
74355864 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
74355880 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
74355893 ATATTATTTAATTAA
1 ATATTATTTAATTAA
74355908 ATATTATTTAAT
1 ATATTATTTAAT
74355920 CCCGCTACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.08
13 7 0.19
14 2 0.06
15 16 0.44
16 5 0.14
17 3 0.08
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:74356036 original size:9 final size:9
Alignment explanation
Indices: 74356024--74356276 Score: 170
Period size: 9 Copynumber: 27.6 Consensus size: 9
74356014 TATTTGATAT
*
74356024 CATAATTTA
1 CATAACTTA
74356033 CATAACTTA
1 CATAACTTA
* *
74356042 TATAACATA
1 CATAACTTA
*
74356051 TATAACTTA
1 CATAACTTA
74356060 CATAACTTA
1 CATAACTTA
* *
74356069 TATAACATA
1 CATAACTTA
*
74356078 TATAACTTA
1 CATAACTTA
74356087 CATAACTTA
1 CATAACTTA
* *
74356096 TATAACCTA
1 CATAACTTA
74356105 CATAACTTA
1 CATAACTTA
*
74356114 TATAACTTA
1 CATAACTTA
*
74356123 TATAACTTA
1 CATAACTTA
* *
74356132 GATAA-ATA
1 CATAACTTA
*
74356140 TATAACTTA
1 CATAACTTA
74356149 CATAACTTA
1 CATAACTTA
74356158 CATAATGCTTA
1 CATAA--CTTA
* *
74356169 AATATATTTTATA
1 CATA-A--CT-TA
*
74356182 TCATAATTTA
1 -CATAACTTA
74356192 CATAACTTA
1 CATAACTTA
74356201 CATAACTTA
1 CATAACTTA
*
74356210 TATAACTTA
1 CATAACTTA
* *
74356219 GATAA-ATA
1 CATAACTTA
* *
74356227 TATAATTTA
1 CATAACTTA
*
74356236 CATAA-ATA
1 CATAACTTA
* * *
74356244 TATATCATA
1 CATAACTTA
*
74356253 TCATAAATTA
1 -CATAACTTA
74356263 CATAACTTA
1 CATAACTTA
74356272 CATAA
1 CATAA
74356277 TACTTAAATA
Statistics
Matches: 197, Mismatches: 38, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
8 17 0.09
9 155 0.79
10 7 0.04
11 9 0.05
12 3 0.02
13 3 0.02
14 3 0.02
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:74356046 original size:18 final size:18
Alignment explanation
Indices: 74356025--74356276 Score: 195
Period size: 18 Copynumber: 13.7 Consensus size: 18
74356015 ATTTGATATC
*
74356025 ATAATTTACATAACTTAT
1 ATAACTTACATAACTTAT
* * *
74356043 ATAACATATATAACTTAC
1 ATAACTTACATAACTTAT
* *
74356061 ATAACTTATATAACATAT
1 ATAACTTACATAACTTAT
74356079 ATAACTTACATAACTTAT
1 ATAACTTACATAACTTAT
*
74356097 ATAACCTACATAACTTAT
1 ATAACTTACATAACTTAT
* *
74356115 ATAACTTATATAACTTAG
1 ATAACTTACATAACTTAT
* * *
74356133 ATAA-ATATATAACTTAC
1 ATAACTTACATAACTTAT
74356150 ATAACTTACATAATGCTTAAAT
1 ATAACTTACATAA--CTT--AT
** * *
74356172 ATATTTTATATCATAATTTAC
1 ATA-ACT-TA-CATAACTTAT
74356193 ATAACTTACATAACTTAT
1 ATAACTTACATAACTTAT
* *
74356211 ATAACTTAGATAA-ATAT
1 ATAACTTACATAACTTAT
* *
74356228 ATAATTTACATAA-ATAT
1 ATAACTTACATAACTTAT
* * * *
74356245 ATATCATATCATAAATTAC
1 ATAACTTA-CATAACTTAT
74356264 ATAACTTACATAA
1 ATAACTTACATAA
74356277 TACTTAAATA
Statistics
Matches: 187, Mismatches: 37, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
17 38 0.20
18 117 0.63
19 10 0.05
20 4 0.02
21 4 0.02
22 4 0.02
23 3 0.02
24 2 0.01
25 5 0.03
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.38
Consensus pattern (18 bp):
ATAACTTACATAACTTAT
Found at i:74356208 original size:114 final size:114
Alignment explanation
Indices: 74356079--74356300 Score: 304
Period size: 114 Copynumber: 1.9 Consensus size: 114
74356069 TATAACATAT
* * *
74356079 ATAACTTACATAACTTATATAACCTACATAACTTATATAACTTATATAACTTAGATA-AATAT-A
1 ATAACTTACATAACTTATATAACCTACATAA-ATATATAACTTACATAA-ATAGATATAATATCA
* * * *
74356142 TAACTTACATAACTTACATAATGCTTAAATATATTTTATATCATAATTTAC
64 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
* * * * *
74356193 ATAACTTACATAACTTATATAACTTAGATAAATATATAATTTACATAAATATATATCATATCATA
1 ATAACTTACATAACTTATATAACCTACATAAATATATAACTTACATAAATAGATATAATATCATA
74356258 AATTACATAACTTACATAATACTTAAATATATATCATATCATA
66 AATTACATAACTTACATAATACTTAAATATATATCATATCATA
74356301 CATAACTAGT
Statistics
Matches: 94, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
112 5 0.05
113 18 0.19
114 71 0.76
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.39
Consensus pattern (114 bp):
ATAACTTACATAACTTATATAACCTACATAAATATATAACTTACATAAATAGATATAATATCATA
AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
Found at i:74361580 original size:50 final size:50
Alignment explanation
Indices: 74361507--74361608 Score: 204
Period size: 50 Copynumber: 2.0 Consensus size: 50
74361497 TCATTAGTAG
74361507 TTTTAAAAAATGTTAAGTTATGTTGCATTTCTTTTTATTATATATTTCGT
1 TTTTAAAAAATGTTAAGTTATGTTGCATTTCTTTTTATTATATATTTCGT
74361557 TTTTAAAAAATGTTAAGTTATGTTGCATTTCTTTTTATTATATATTTCGT
1 TTTTAAAAAATGTTAAGTTATGTTGCATTTCTTTTTATTATATATTTCGT
74361607 TT
1 TT
74361609 CTAACTCTTT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.27, C:0.06, G:0.10, T:0.57
Consensus pattern (50 bp):
TTTTAAAAAATGTTAAGTTATGTTGCATTTCTTTTTATTATATATTTCGT
Found at i:74362421 original size:43 final size:43
Alignment explanation
Indices: 74362374--74362472 Score: 110
Period size: 43 Copynumber: 2.3 Consensus size: 43
74362364 ATCTGCCAAA
* * *
74362374 TTTAGCGGCGTTTGT-AAAAAAAGTGCCACTAAAAGCCTTGACG
1 TTTAGCGGCGTTTCTCAAAAAAA-CGCCACTAAAAGCCTTGACC
* ** * *
74362417 TTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGTTTCTCAAAAAAACGCCACTAAAAGCCTTGACC
74362460 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
74362473 TTTTCCAATA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
43 42 0.91
44 4 0.09
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (43 bp):
TTTAGCGGCGTTTCTCAAAAAAACGCCACTAAAAGCCTTGACC
Found at i:74363708 original size:13 final size:13
Alignment explanation
Indices: 74363690--74363715 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74363680 TAAAGACTAA
74363690 AATGCAATCCACT
1 AATGCAATCCACT
74363703 AATGCAATCCACT
1 AATGCAATCCACT
74363716 CTAAGTACTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.31, G:0.08, T:0.23
Consensus pattern (13 bp):
AATGCAATCCACT
Found at i:74366203 original size:40 final size:39
Alignment explanation
Indices: 74366136--74366229 Score: 118
Period size: 40 Copynumber: 2.4 Consensus size: 39
74366126 CCAACTCTGT
* * *
74366136 CCAACCCAACACACC-ATGTAGGGATAAAATCGATCCAC
1 CCAACCCTACACACCAATGTAGGGATAAAATCAACCCAC
* * *
74366174 CCATCCCTACACACCAAATGTGGGGATAAAATCAACCCAT
1 CCAACCCTACACACC-AATGTAGGGATAAAATCAACCCAC
74366214 CCAACCCTACACACCA
1 CCAACCCTACACACCA
74366230 TAGAGTACCG
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
38 13 0.28
39 1 0.02
40 33 0.70
ACGTcount: A:0.38, C:0.37, G:0.11, T:0.14
Consensus pattern (39 bp):
CCAACCCTACACACCAATGTAGGGATAAAATCAACCCAC
Found at i:74368146 original size:13 final size:13
Alignment explanation
Indices: 74368128--74368153 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74368118 AAATGGGTTC
74368128 AAATTTATTATAT
1 AAATTTATTATAT
74368141 AAATTTATTATAT
1 AAATTTATTATAT
74368154 TTTATTTGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
AAATTTATTATAT
Found at i:74374639 original size:40 final size:39
Alignment explanation
Indices: 74374575--74374762 Score: 223
Period size: 39 Copynumber: 4.8 Consensus size: 39
74374565 GCTACTCGTT
* * * ** *
74374575 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
74374615 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
*
74374655 CAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * * * *
74374694 CAATTGCCTTCGGGCTTAGCCCGGATGTCACAATTTGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
*
74374733 CAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCA
74374763 CTCGAACATT
Statistics
Matches: 132, Mismatches: 16, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 87 0.66
40 45 0.34
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:74374690 original size:39 final size:39
Alignment explanation
Indices: 74374611--74374763 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
74374601 TATGGTAACC
* *
74374611 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
74374651 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
74374690 CGCACAATTGCCTTCGGGCTTAGCCCGGATGTCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
74374729 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
74374764 TCGAACATTT
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:74374741 original size:78 final size:79
Alignment explanation
Indices: 74374580--74374762 Score: 260
Period size: 78 Copynumber: 2.3 Consensus size: 79
74374570 TCGTTCAAAC
* * **
74374580 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
74374645 ACAACTCGCACAATT
65 ACAACTCGCACAATT
* * * *
74374660 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATGTCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
* *
74374724 CAATTTGCACAATT
66 CAACTCGCACAATT
74374738 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
74374763 CTCGAACATT
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
78 51 0.55
79 33 0.35
80 9 0.10
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
CAACTCGCACAATT
Found at i:74377815 original size:16 final size:16
Alignment explanation
Indices: 74377790--74377823 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
74377780 ATGAATATAT
* *
74377790 ATGTGTAAATGTGATA
1 ATGTGCAAATATGATA
74377806 ATGTGCAAATATGATA
1 ATGTGCAAATATGATA
74377822 AT
1 AT
74377824 TGGATATTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.35
Consensus pattern (16 bp):
ATGTGCAAATATGATA
Found at i:74382367 original size:21 final size:21
Alignment explanation
Indices: 74382341--74382396 Score: 76
Period size: 22 Copynumber: 2.6 Consensus size: 21
74382331 ACACAGGAGC
*
74382341 ACACGCCGTGTGGGAGGGGCA
1 ACACGCCGTGTGGGAGGGACA
*
74382362 ACACGCCCGTATGGGAGGGACA
1 ACACG-CCGTGTGGGAGGGACA
74382384 ACACGCTCGTGTG
1 ACACGC-CGTGTG
74382397 AAATTTCAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.20
22 24 0.80
ACGTcount: A:0.21, C:0.27, G:0.39, T:0.12
Consensus pattern (21 bp):
ACACGCCGTGTGGGAGGGACA
Found at i:74386360 original size:22 final size:22
Alignment explanation
Indices: 74386287--74386437 Score: 144
Period size: 22 Copynumber: 6.7 Consensus size: 22
74386277 TCAGCTCGTA
* *
74386287 AGAGCTTACTGTTTTTAGCTCATT
1 AGAGCTTACTG--TTCAGCTCAAT
* *
74386311 AGAGCTTACCGTTTTAGCTC-AT
1 AGAGCTTACTG-TTCAGCTCAAT
74386333 ATGAGCTTACTGTTCAGCTCAAT
1 A-GAGCTTACTGTTCAGCTCAAT
*
74386356 AGAGCTTACTGTTCAGCTCGAT
1 AGAGCTTACTGTTCAGCTCAAT
*
74386378 AGAGCTTACTGTTCAGCTCGAT
1 AGAGCTTACTGTTCAGCTCAAT
* * *
74386400 AGATCTTGCCGTTTCAGCTCAA-
1 AGAGCTTACTG-TTCAGCTCAAT
*
74386422 ATGAGCTTACTATTCA
1 A-GAGCTTACTGTTCA
74386438 TCAGCTTAGG
Statistics
Matches: 110, Mismatches: 13, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
22 64 0.58
23 36 0.33
24 10 0.09
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.36
Consensus pattern (22 bp):
AGAGCTTACTGTTCAGCTCAAT
Found at i:74389139 original size:37 final size:36
Alignment explanation
Indices: 74389089--74389175 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
74389079 TACGAAGTCT
74389089 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
74389125 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
74389162 TCACCCGGAACATA
1 T-ACCCGG-ACATA
74389176 TTTCCAAATT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:74389321 original size:49 final size:49
Alignment explanation
Indices: 74389250--74389448 Score: 371
Period size: 49 Copynumber: 4.0 Consensus size: 49
74389240 ACATATATAG
*
74389250 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
74389299 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
74389348 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
*
74389397 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATATACATAT
1 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTAT-CACATAT
74389447 AT
1 AT
74389449 TATTATGTAC
Statistics
Matches: 147, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
49 139 0.95
50 8 0.05
ACGTcount: A:0.31, C:0.26, G:0.08, T:0.35
Consensus pattern (49 bp):
ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
Found at i:74392517 original size:40 final size:39
Alignment explanation
Indices: 74392460--74392598 Score: 116
Period size: 40 Copynumber: 3.5 Consensus size: 39
74392450 GCTCGATTGT
* * *
74392460 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAAATGC
1 CTTCGGGACTTAACCCGGTT-TAGTAATTCGCACAAATGC
* * *
74392500 CTTCAGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGG-TTTAGTAATTCGCACAAATGC
* * * * * * *
74392540 CCTCGGGAATTGACCCGAATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAACCCG-GTTTAGT-AATTCGCACAAATGC
*
74392581 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAACCCGG
74392599 ATACCATTCG
Statistics
Matches: 75, Mismatches: 21, Indels: 6
0.74 0.21 0.06
Matches are distributed among these distances:
40 49 0.65
41 26 0.35
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (39 bp):
CTTCGGGACTTAACCCGGTTTAGTAATTCGCACAAATGC
Found at i:74393389 original size:40 final size:40
Alignment explanation
Indices: 74393345--74393456 Score: 170
Period size: 40 Copynumber: 2.8 Consensus size: 40
74393335 CTTGCATGAT
* * * * * *
74393345 TGCTCTTTGGGACCTAGCCCGGATACATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATATATCATTAGCACAAA
74393385 TGCTCTTCGGAACTTAGTCCGGATATATCATTAGCACAAA
1 TGCTCTTCGGAACTTAGTCCGGATATATCATTAGCACAAA
74393425 TGCTCTTCGGAACTTAGTCCGGATATATCATT
1 TGCTCTTCGGAACTTAGTCCGGATATATCATT
74393457 CTCAATTCTC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATATATCATTAGCACAAA
Found at i:74395567 original size:47 final size:47
Alignment explanation
Indices: 74395508--74395652 Score: 263
Period size: 47 Copynumber: 3.0 Consensus size: 47
74395498 ACATATATAG
*
74395508 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
74395555 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--AT
74395604 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
74395651 AT
1 AT
74395653 TGTTGCGACG
Statistics
Matches: 95, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
47 48 0.51
49 47 0.49
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (47 bp):
ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
Found at i:74395625 original size:49 final size:49
Alignment explanation
Indices: 74395508--74395652 Score: 267
Period size: 49 Copynumber: 3.0 Consensus size: 49
74395498 ACATATATAG
*
74395508 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--AT
1 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
74395555 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
74395604 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
74395653 TGTTGCGACG
Statistics
Matches: 95, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
47 44 0.46
49 51 0.54
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (49 bp):
ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
Found at i:74396716 original size:20 final size:21
Alignment explanation
Indices: 74396687--74396738 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 21
74396677 AACTAATGGC
*
74396687 ATATATACATAATATATATAT
1 ATATACACATAATATATATAT
74396708 A-ATACACATAATATATATAT
1 ATATACACATAATATATATAT
*
74396728 ATATATACATA
1 ATATACACATA
74396739 TTAGAAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 19 0.68
21 9 0.32
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATACACATAATATATATAT
Found at i:74397273 original size:11 final size:12
Alignment explanation
Indices: 74397257--74397293 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
74397247 AGAAAAAAAA
74397257 GGAAGAGAG-AG
1 GGAAGAGAGAAG
74397268 GGAAGAGAGAAG
1 GGAAGAGAGAAG
74397280 GG-AGAGAGAAG
1 GGAAGAGAGAAG
74397291 GGA
1 GGA
74397294 GGGGGAAGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 20 0.83
12 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (12 bp):
GGAAGAGAGAAG
Found at i:74397294 original size:11 final size:11
Alignment explanation
Indices: 74397255--74397304 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
74397245 AAAGAAAAAA
*
74397255 AAGGAAGAGAG
1 AAGGGAGAGAG
74397266 -AGGGAAGAGAG
1 AAGGG-AGAGAG
74397277 AAGGGAGAGAG
1 AAGGGAGAGAG
* *
74397288 AAGGGAGGGGG
1 AAGGGAGAGAG
74397299 AAGGGA
1 AAGGGA
74397305 AATCCGGTCG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 3 0.09
11 27 0.79
12 4 0.12
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (11 bp):
AAGGGAGAGAG
Found at i:74397597 original size:13 final size:14
Alignment explanation
Indices: 74397565--74397597 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
74397555 TTTTTTGTTT
74397565 TTTTTTGCTGGAAA
1 TTTTTTGCTGGAAA
74397579 TTTTTT-CTGGAAA
1 TTTTTTGCTGGAAA
74397592 TTTTTT
1 TTTTTT
74397598 TTTGGTGCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.18, C:0.06, G:0.15, T:0.61
Consensus pattern (14 bp):
TTTTTTGCTGGAAA
Found at i:74397598 original size:14 final size:15
Alignment explanation
Indices: 74397564--74397598 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
74397554 TTTTTTTGTT
74397564 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
74397579 -TTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
74397592 TTTTTTT
1 TTTTTTT
74397599 TTGGTGCTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:74397599 original size:33 final size:31
Alignment explanation
Indices: 74397562--74397637 Score: 100
Period size: 33 Copynumber: 2.4 Consensus size: 31
74397552 TTTTTTTTTG
74397562 TTTTTTTTTGCTGGAAATTTTTT-CTGGAAATTT
1 TTTTTTTTTGCTGG-AATTTTTTGCTGG--ATTT
**
74397595 TTTTTTGGTGCTGGAATTTTTTGCTGGATTT
1 TTTTTTTTTGCTGGAATTTTTTGCTGGATTT
74397626 TTTTTTTTTGCT
1 TTTTTTTTTGCT
74397638 TCCCCTCTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
31 14 0.37
32 8 0.21
33 16 0.42
ACGTcount: A:0.12, C:0.07, G:0.18, T:0.63
Consensus pattern (31 bp):
TTTTTTTTTGCTGGAATTTTTTGCTGGATTT
Found at i:74398078 original size:35 final size:35
Alignment explanation
Indices: 74398038--74398143 Score: 194
Period size: 35 Copynumber: 3.0 Consensus size: 35
74398028 GGGGTGTGTG
*
74398038 ATGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
*
74398073 GTGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
74398108 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
74398143 A
1 A
74398144 GAGGCAAGTG
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 68 1.00
ACGTcount: A:0.23, C:0.12, G:0.49, T:0.16
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
Found at i:74398926 original size:48 final size:50
Alignment explanation
Indices: 74398850--74398995 Score: 174
Period size: 53 Copynumber: 2.9 Consensus size: 50
74398840 ATATGACCTA
**
74398850 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAA-AA-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
* *
74398898 AGG-TACAACTCACCTCTCGCAATATGAGTTG-CTTTTGAAAGACAGAAATTAAC
1 AGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-A-A-CAA-TAAC
*
74398951 AGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTTTGAAAAACA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
74398996 GGAATTGGAA
Statistics
Matches: 82, Mismatches: 7, Indels: 15
0.79 0.07 0.14
Matches are distributed among these distances:
47 9 0.11
48 28 0.34
49 1 0.01
50 2 0.02
51 1 0.01
52 3 0.04
53 29 0.35
54 9 0.11
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (50 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
Found at i:74398972 original size:53 final size:52
Alignment explanation
Indices: 74398849--74399001 Score: 174
Period size: 48 Copynumber: 3.0 Consensus size: 52
74398839 CATATGACCT
** *
74398849 AAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAA-A-CAA--A
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTA
*
74398897 AAGG-TACAACTCACCTCTCGCAATATGAGTTG-CTTTTGAAAGACAGAAATTA
1 AAGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-ACAGAAATTA
* *
74398949 ACAGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTTTGAAAAACAGGAATT
1 A-AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACAGAAATT
74399002 GGAAAGTAGA
Statistics
Matches: 88, Mismatches: 7, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
47 9 0.10
48 29 0.33
49 1 0.01
50 2 0.02
52 2 0.02
53 28 0.32
54 14 0.16
55 3 0.03
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (52 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTA
Found at i:74399142 original size:70 final size:70
Alignment explanation
Indices: 74399051--74399639 Score: 962
Period size: 70 Copynumber: 8.2 Consensus size: 70
74399041 CTCAACTCAC
*
74399051 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
*
74399116 TCGCCA
65 TCGCAA
* *
74399122 TAGGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACT
1 TATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
74399187 CACCTCTCGCAA
59 CACCTCTCGCAA
*
74399199 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
74399264 CGCAA
66 CGCAA
74399269 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
*
74399334 CGCCA
66 CGCAA
*
74399339 TATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACT
1 TATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
74399404 CACCTCTCGCAA
59 CACCTCTCGCAA
*
74399416 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
74399481 CGCAA
66 CGCAA
74399486 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
74399551 CGCAA
66 CGCAA
74399556 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
74399621 CGCAA
66 CGCAA
*
74399626 TGTGAGTTGATTTT
1 TATGAGTTGATTTT
74399640 CTGTCACTTG
Statistics
Matches: 489, Mismatches: 15, Indels: 29
0.92 0.03 0.05
Matches are distributed among these distances:
70 342 0.70
71 9 0.02
72 2 0.00
73 2 0.00
74 2 0.00
75 2 0.00
77 130 0.27
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (70 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCAA
Found at i:74399244 original size:147 final size:140
Alignment explanation
Indices: 74399051--74399639 Score: 962
Period size: 147 Copynumber: 4.1 Consensus size: 140
74399041 CTCAACTCAC
*
74399051 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* * *
74399116 TCGCCATAGGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
65 TCGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGC
74399181 TCAACTCACCTCTCGCAA
123 TCAACTCACCTCTCGCAA
*
74399199 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
74399264 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
*
74399329 CCTCTCGCCA
131 CCTCTCGCAA
*
74399339 TATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACT
1 TATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
74399404 CACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
59 CACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
*
74399469 TAACTCACCTCTCGCAA
124 CAACTCACCTCTCGCAA
74399486 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
74399551 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
74399616 CCTCTCGCAA
131 CCTCTCGCAA
*
74399626 TGTGAGTTGATTTT
1 TATGAGTTGATTTT
74399640 CTGTCACTTG
Statistics
Matches: 421, Mismatches: 13, Indels: 22
0.92 0.03 0.05
Matches are distributed among these distances:
140 196 0.47
142 2 0.00
143 2 0.00
144 1 0.00
145 1 0.00
147 209 0.50
148 10 0.02
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (140 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
CCTCTCGCAA
Found at i:74399335 original size:217 final size:217
Alignment explanation
Indices: 74399051--74399639 Score: 1075
Period size: 217 Copynumber: 2.7 Consensus size: 217
74399041 CTCAACTCAC
*
74399051 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
*
74399116 TCGCCATAGGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
65 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
74399181 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
130 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
74399246 GAGGCTTAACTCACCTCTCGCAA
195 GAGGCTTAACTCACCTCTCGCAA
74399269 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
74399334 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
74399399 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
131 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
74399464 AGGCTTAACTCACCTCTCGCAA
196 AGGCTTAACTCACCTCTCGCAA
74399486 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
74399551 CGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
*
74399609 CAACTCACCTCTCGCAATGTGAGTTGATTTT
131 CAACTCACCTCTCGCAATATGAGTTGATTTT
74399640 CTGTCACTTG
Statistics
Matches: 366, Mismatches: 5, Indels: 8
0.97 0.01 0.02
Matches are distributed among these distances:
210 61 0.17
212 1 0.00
213 1 0.00
217 293 0.80
218 10 0.03
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (217 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
AGGCTTAACTCACCTCTCGCAA
Found at i:74407864 original size:2 final size:2
Alignment explanation
Indices: 74407859--74407896 Score: 51
Period size: 2 Copynumber: 19.0 Consensus size: 2
74407849 AACTAATGGC
*
74407859 AT AT AT AC AT A- AT AT AT AT AT AT AT AT AT AT AT CAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
74407897 TAGAAATGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
1 1 0.03
2 29 0.91
3 2 0.06
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:74408431 original size:11 final size:12
Alignment explanation
Indices: 74408415--74408451 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
74408405 AGAAAAAAAA
74408415 GGAAGAGAG-AG
1 GGAAGAGAGAAG
74408426 GGAAGAGAGAAG
1 GGAAGAGAGAAG
74408438 GG-AGAGAGAAG
1 GGAAGAGAGAAG
74408449 GGA
1 GGA
74408452 GGGGGAAGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 20 0.83
12 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (12 bp):
GGAAGAGAGAAG
Found at i:74408452 original size:11 final size:11
Alignment explanation
Indices: 74408413--74408462 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
74408403 AAAGAAAAAA
*
74408413 AAGGAAGAGAG
1 AAGGGAGAGAG
74408424 -AGGGAAGAGAG
1 AAGGG-AGAGAG
74408435 AAGGGAGAGAG
1 AAGGGAGAGAG
* *
74408446 AAGGGAGGGGG
1 AAGGGAGAGAG
74408457 AAGGGA
1 AAGGGA
74408463 AATCCGGTCG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 3 0.09
11 27 0.79
12 4 0.12
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (11 bp):
AAGGGAGAGAG
Found at i:74408755 original size:30 final size:29
Alignment explanation
Indices: 74408720--74408790 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 29
74408710 TTTTTTTGGT
*
74408720 TTTTTTTTTGCTGGAAATTTTTTTCTGGAAA
1 TTTTTTTTTGCTGG-AATTTTTTGCT-GAAA
*
74408751 TTTTTTTTGGTGCTGGAATTTTTTGCTGAAT
1 TTTTTTTT--TGCTGGAATTTTTTGCTGAAA
74408782 TTTTTTTTT
1 TTTTTTTTT
74408791 TGCTTCCCCT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
29 1 0.03
31 19 0.53
32 10 0.28
33 6 0.17
ACGTcount: A:0.14, C:0.06, G:0.17, T:0.63
Consensus pattern (29 bp):
TTTTTTTTTGCTGGAATTTTTTGCTGAAA
Found at i:74408757 original size:14 final size:15
Alignment explanation
Indices: 74408722--74408757 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
74408712 TTTTTGGTTT
74408722 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
74408737 TTTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
74408751 TTTTTTT
1 TTTTTTT
74408758 TGGTGCTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:74408758 original size:15 final size:16
Alignment explanation
Indices: 74408721--74408759 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
74408711 TTTTTTGGTT
74408721 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
74408737 -TTTTTTT-CTGGAAA
1 TTTTTTTTGCTGGAAA
74408751 TTTTTTTTG
1 TTTTTTTTG
74408760 GTGCTGGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.15, C:0.05, G:0.15, T:0.64
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:74408786 original size:14 final size:15
Alignment explanation
Indices: 74408721--74408788 Score: 63
Period size: 15 Copynumber: 4.5 Consensus size: 15
74408711 TTTTTTGGTT
74408721 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
*
74408736 ATTTTTTT-CTGGAAA
1 TTTTTTTTGCTGG-AA
74408751 TTTTTTTTGGTGCTGGAA
1 -TTTTTTT--TGCTGGAA
74408769 --TTTTTTGCT-GAA
1 TTTTTTTTGCTGGAA
74408781 TTTTTTTT
1 TTTTTTTT
74408789 TTTGCTTCCC
Statistics
Matches: 44, Mismatches: 2, Indels: 15
0.72 0.03 0.25
Matches are distributed among these distances:
12 3 0.07
13 4 0.09
14 10 0.23
15 14 0.32
16 6 0.14
18 3 0.07
19 4 0.09
ACGTcount: A:0.15, C:0.06, G:0.18, T:0.62
Consensus pattern (15 bp):
TTTTTTTTGCTGGAA
Found at i:74408790 original size:32 final size:31
Alignment explanation
Indices: 74408719--74408790 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 31
74408709 TTTTTTTTGG
*
74408719 TTTTTTTTTTGCTGGAAATTTTTTTCTGGAAA
1 TTTTTTTTTTGCTGGAAATTTTTTGCTGG-AA
*
74408751 TTTTTTTTGGTGCTGG-AATTTTTTGCT-GAA
1 TTTTTTTT-TTGCTGGAAATTTTTTGCTGGAA
74408781 TTTTTTTTTT
1 TTTTTTTTTT
74408791 TGCTTCCCCT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
29 1 0.03
30 10 0.28
31 1 0.03
32 18 0.50
33 6 0.17
ACGTcount: A:0.14, C:0.06, G:0.17, T:0.64
Consensus pattern (31 bp):
TTTTTTTTTTGCTGGAAATTTTTTGCTGGAA
Found at i:74409237 original size:35 final size:35
Alignment explanation
Indices: 74409197--74409302 Score: 194
Period size: 35 Copynumber: 3.0 Consensus size: 35
74409187 GGGGTGTGTG
*
74409197 ATGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
*
74409232 GTGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
74409267 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
74409302 A
1 A
74409303 GAGGCAAGTG
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 68 1.00
ACGTcount: A:0.23, C:0.12, G:0.49, T:0.16
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
Found at i:74409501 original size:49 final size:50
Alignment explanation
Indices: 74409439--74409547 Score: 186
Period size: 49 Copynumber: 2.2 Consensus size: 50
74409429 TTGGCCTACA
74409439 ACACATA-ATTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 ACACATATA-TATACATTTTCACATTCATCACATCGGCCATTAGGCCTTAT
74409489 -CACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 ACACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTAT
*
74409538 ATACATATAT
1 ACACATATAT
74409548 TATTATGTAC
Statistics
Matches: 56, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
49 47 0.84
50 9 0.16
ACGTcount: A:0.33, C:0.25, G:0.07, T:0.35
Consensus pattern (50 bp):
ACACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTAT
Found at i:74415637 original size:22 final size:22
Alignment explanation
Indices: 74415607--74415677 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
74415597 GCATAAGTAT
*
74415607 AATACAAAAACATGCAAATCAC
1 AATAAAAAAACATGCAAATCAC
* *
74415629 AATAAAAAAA-AT-CACAATAAT
1 AATAAAAAAACATGCA-AATCAC
* * *
74415650 ATATACAAAAGCATGCAAAACAC
1 A-ATAAAAAAACATGCAAATCAC
74415673 AATAA
1 AATAA
74415678 TATCACTTCA
Statistics
Matches: 36, Mismatches: 9, Indels: 8
0.68 0.17 0.15
Matches are distributed among these distances:
20 2 0.06
21 7 0.19
22 19 0.53
23 6 0.17
24 2 0.06
ACGTcount: A:0.63, C:0.17, G:0.04, T:0.15
Consensus pattern (22 bp):
AATAAAAAAACATGCAAATCAC
Found at i:74419049 original size:22 final size:22
Alignment explanation
Indices: 74419024--74419068 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
74419014 TTTAATAAAA
74419024 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
74419046 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
74419068 A
1 A
74419069 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:74423645 original size:22 final size:22
Alignment explanation
Indices: 74423619--74423663 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
74423609 TTTTAATAAA
74423619 AAAATATCTACAA-AATATTCCT
1 AAAATATCTA-AAGAATATTCCT
*
74423641 AAAATATTTAAAGAATATTCCT
1 AAAATATCTAAAGAATATTCCT
74423663 A
1 A
74423664 CATTATTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 2 0.10
22 19 0.90
ACGTcount: A:0.51, C:0.13, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTAAAGAATATTCCT
Found at i:74431254 original size:14 final size:14
Alignment explanation
Indices: 74431235--74431261 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
74431225 GATTTTATTC
74431235 TTTTTATTCTTTTG
1 TTTTTATTCTTTTG
74431249 TTTTTATTCTTTT
1 TTTTTATTCTTTT
74431262 TTTAAAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.07, G:0.04, T:0.81
Consensus pattern (14 bp):
TTTTTATTCTTTTG
Found at i:74434587 original size:48 final size:48
Alignment explanation
Indices: 74434510--74434609 Score: 139
Period size: 48 Copynumber: 2.1 Consensus size: 48
74434500 TAAGACTATA
* *
74434510 TCTGGGATATGGCTTTGGCAGTGACATGTGATCCCATGTAAAACCATG
1 TCTGGGATAAGGCTTTGGCAGTCACATGTGATCCCATGTAAAACCATG
* * *
74434558 TCTGGGATAAGGCTTTGGCA-TCATTATGTGATCCCATGTAAGATCATG
1 TCTGGGATAAGGCTTTGGCAGTCA-CATGTGATCCCATGTAAAACCATG
74434606 TCTG
1 TCTG
74434610 AGACATGGCA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 2 0.04
48 44 0.96
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (48 bp):
TCTGGGATAAGGCTTTGGCAGTCACATGTGATCCCATGTAAAACCATG
Found at i:74434628 original size:48 final size:48
Alignment explanation
Indices: 74434535--74434629 Score: 127
Period size: 48 Copynumber: 2.0 Consensus size: 48
74434525 TGGCAGTGAC
* * * *
74434535 ATGTGATCCCATGTAAAACCATGTCTGGGATAAGGCTTTGGCATCATT
1 ATGTGATCCCATGTAAAACCATGTCTGAGACAAGGCATTGACATCATT
* * *
74434583 ATGTGATCCCATGTAAGATCATGTCTGAGACATGGCATTGACATCAT
1 ATGTGATCCCATGTAAAACCATGTCTGAGACAAGGCATTGACATCAT
74434630 AATGAGACAT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (48 bp):
ATGTGATCCCATGTAAAACCATGTCTGAGACAAGGCATTGACATCATT
Found at i:74442407 original size:26 final size:26
Alignment explanation
Indices: 74442358--74442423 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 26
74442348 ATATGTTTTT
* *
74442358 TAATTTTT-T-ATTTATTTATCTTTA
1 TAATTTTTATAATTTATATATATTTA
74442382 TAATTTTTATAATTTATATATATTTA
1 TAATTTTTATAATTTATATATATTTA
74442408 -AATTTATTATATATTT
1 TAATTT-TTATA-ATTT
74442424 TTGAAAATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
24 8 0.22
25 6 0.17
26 18 0.50
27 4 0.11
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (26 bp):
TAATTTTTATAATTTATATATATTTA
Found at i:74442418 original size:17 final size:17
Alignment explanation
Indices: 74442378--74442423 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
74442368 TTTATTTATC
*
74442378 TTTATA-ATTTTTATAA
1 TTTATATATATTTATAA
74442394 TTTATATATATTTA-AA
1 TTTATATATATTTATAA
74442410 TTTATTATATATTT
1 TTTA-TATATATTT
74442424 TTGAAAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 12 0.44
17 15 0.56
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTATATATATTTATAA
Found at i:74442434 original size:19 final size:18
Alignment explanation
Indices: 74442379--74442434 Score: 53
Period size: 19 Copynumber: 3.1 Consensus size: 18
74442369 TTATTTATCT
*
74442379 TTATA-ATTTTTATAAT-
1 TTATATATTTTTAAAATA
* *
74442395 TTATATATATTTAAATTTA
1 TTATATATTTTTAAA-ATA
74442414 TTATATATTTTTGAAAATA
1 TTATATATTTTT-AAAATA
74442433 TT
1 TT
74442435 TATGTATTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
16 5 0.16
17 7 0.23
18 1 0.03
19 15 0.48
20 3 0.10
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (18 bp):
TTATATATTTTTAAAATA
Found at i:74446586 original size:21 final size:21
Alignment explanation
Indices: 74446560--74446600 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
74446550 AGACAAGCGA
* *
74446560 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
74446581 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
74446601 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:74448933 original size:31 final size:32
Alignment explanation
Indices: 74448866--74448936 Score: 92
Period size: 32 Copynumber: 2.2 Consensus size: 32
74448856 CCAACCTTGG
* *
74448866 TCAAATAAAGGTCTAATATTTTTCAAAAATAT
1 TCAAATAAAGGTCAAAAATTTTTCAAAAATAT
*
74448898 TCAAATAAAGAG-CAAAAATTTTT-AAAAGTAT
1 TCAAATAAAG-GTCAAAAATTTTTCAAAAATAT
74448929 TCAAATAA
1 TCAAATAA
74448937 GTATTTATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
31 15 0.43
32 19 0.54
33 1 0.03
ACGTcount: A:0.52, C:0.08, G:0.07, T:0.32
Consensus pattern (32 bp):
TCAAATAAAGGTCAAAAATTTTTCAAAAATAT
Found at i:74449100 original size:42 final size:42
Alignment explanation
Indices: 74449053--74449139 Score: 165
Period size: 42 Copynumber: 2.1 Consensus size: 42
74449043 TTTACTTAAT
*
74449053 TTTTTTTTGTATAAATCGAGTTAAAATAGGTAAAAAAAAATC
1 TTTTTTATGTATAAATCGAGTTAAAATAGGTAAAAAAAAATC
74449095 TTTTTTATGTATAAATCGAGTTAAAATAGGTAAAAAAAAATC
1 TTTTTTATGTATAAATCGAGTTAAAATAGGTAAAAAAAAATC
74449137 TTT
1 TTT
74449140 ATTTGAGCAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.45, C:0.05, G:0.11, T:0.39
Consensus pattern (42 bp):
TTTTTTATGTATAAATCGAGTTAAAATAGGTAAAAAAAAATC
Found at i:74451295 original size:178 final size:174
Alignment explanation
Indices: 74451000--74451336 Score: 462
Period size: 178 Copynumber: 1.9 Consensus size: 174
74450990 AGCATTTTAA
* **
74451000 TCTAAATTATGTCAAAATTATAGAGATTAAATCTCAAATTTGAGTGAAATATAGGGATCAGCACT
1 TCTAAATTATGTCAAAATTATAGAGATTAAATCTCAAATTTGAGTGAAATATAGAGATCAAAACT
* * *** *
74451065 GAAATTTAATCATTCTTATATAATCTTAAAAAAGTATTTGGACTAGAACTGAAATTTAGCCATTA
66 AAAATTTAACCATTCTTATATAATCTTAAAAAAGTAGAGGGACTAGAACTGAAATTTAACCATTA
*
74451130 -TTTTCTCATGTGAAAAGAAAAGGAAAAAAAAAGAACACTCAGGT
131 TTTTTCTCATGTCAAAAGAAAA-GAAAAAAAAAGAACACTCAGGT
74451174 TCTAAATTATGTCAAAATAAAGTATAGAGATTAAATCTCAAATTTGAGTGAAATATA-AGACTCA
1 TCTAAATTATGTCAAAAT----TATAGAGATTAAATCTCAAATTTGAGTGAAATATAGAGA-TCA
* * * * *
74451238 AAACTAAAATTTAACCGTTCTTATATAATCTTGAGAAGGTAGAGGGATTAGAACTGAAATTTAAC
61 AAACTAAAATTTAACCATTCTTATATAATCTTAAAAAAGTAGAGGGACTAGAACTGAAATTTAAC
*
74451303 CATTATTTTTTTCATGTCAAAAGAAAAGAAAAAA
126 CATTATTTTTCTCATGTCAAAAGAAAAGAAAAAA
74451337 GAATGGGCGG
Statistics
Matches: 141, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
174 18 0.13
177 2 0.01
178 102 0.72
179 19 0.13
ACGTcount: A:0.45, C:0.10, G:0.14, T:0.31
Consensus pattern (174 bp):
TCTAAATTATGTCAAAATTATAGAGATTAAATCTCAAATTTGAGTGAAATATAGAGATCAAAACT
AAAATTTAACCATTCTTATATAATCTTAAAAAAGTAGAGGGACTAGAACTGAAATTTAACCATTA
TTTTTCTCATGTCAAAAGAAAAGAAAAAAAAAGAACACTCAGGT
Found at i:74452104 original size:2 final size:2
Alignment explanation
Indices: 74452097--74452134 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
74452087 ACTTTAATAA
74452097 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74452135 CTCTTTATTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74452778 original size:17 final size:16
Alignment explanation
Indices: 74452758--74452800 Score: 61
Period size: 17 Copynumber: 2.7 Consensus size: 16
74452748 ATTTAAAGTC
74452758 AAAATTAATTTAAACAT
1 AAAATTAATTT-AACAT
*
74452775 AAAATTAATATAACAT
1 AAAATTAATTTAACAT
74452791 AAAA-TAATTT
1 AAAATTAATTT
74452801 TAAAATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 5 0.21
16 9 0.38
17 10 0.42
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (16 bp):
AAAATTAATTTAACAT
Found at i:74452791 original size:16 final size:17
Alignment explanation
Indices: 74452758--74452795 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
74452748 ATTTAAAGTC
*
74452758 AAAATTAATTTAAACAT
1 AAAATTAATATAAACAT
74452775 AAAATTAATAT-AACAT
1 AAAATTAATATAAACAT
74452791 AAAAT
1 AAAAT
74452796 AATTTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (17 bp):
AAAATTAATATAAACAT
Found at i:74455448 original size:79 final size:81
Alignment explanation
Indices: 74455347--74455531 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
74455337 ACGACTCGCT
** * *
74455347 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
74455410 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
74455427 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
74455491 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
74455507 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74455532 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:74455531 original size:40 final size:39
Alignment explanation
Indices: 74455340--74455531 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
74455330 GGATATAACG
* ** * *
74455340 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
74455380 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
74455420 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
74455459 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
74455499 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
74455532 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:74462758 original size:30 final size:29
Alignment explanation
Indices: 74462664--74462765 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
74462654 TATAGTGAAT
* * *
74462664 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
74462693 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
74462721 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
74462751 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
74462766 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:74466591 original size:79 final size:82
Alignment explanation
Indices: 74466473--74466657 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
74466463 AAGACTCGCT
** * *
74466473 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
74466536 GGGTTTAGTAACTT-GCA
65 GGATATAGTAACTTAGCA
* **
74466553 CAAATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTCGGATCCTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
*
74466616 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
74466633 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74466658 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
GATATAGTAACTTAGCA
Found at i:74466657 original size:40 final size:39
Alignment explanation
Indices: 74466466--74466657 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
74466456 CGGATATAAG
* ** * *
74466466 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
74466506 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
74466546 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
74466585 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
74466625 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
74466658 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:74471772 original size:124 final size:124
Alignment explanation
Indices: 74471556--74471801 Score: 483
Period size: 124 Copynumber: 2.0 Consensus size: 124
74471546 TGTGCCCTCA
*
74471556 TTGACACCACAATTCAAACACCTAAACAAAATCACATTCATCTATCACGATTTCACTCATCAATT
1 TTGACACCACAATTCAAACACCTAAACAAAATCACATTCATCTATCACAATTTCACTCATCAATT
74471621 CATCCATTTAACCATTAAATACCAAAGCAATATGAGCTATACTATATATGACCAAAATG
66 CATCCATTTAACCATTAAATACCAAAGCAATATGAGCTATACTATATATGACCAAAATG
74471680 TTGACACCACAATTCAAACACCTAAACAAAATCACATTCATCTATCACAATTTCACTCATCAATT
1 TTGACACCACAATTCAAACACCTAAACAAAATCACATTCATCTATCACAATTTCACTCATCAATT
74471745 CATCCATTTAACCATTAAATACCAAAGCAATATGAGCTATACTATATATGACCAAAA
66 CATCCATTTAACCATTAAATACCAAAGCAATATGAGCTATACTATATATGACCAAAA
74471802 GATCAAACTT
Statistics
Matches: 121, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
124 121 1.00
ACGTcount: A:0.43, C:0.25, G:0.05, T:0.27
Consensus pattern (124 bp):
TTGACACCACAATTCAAACACCTAAACAAAATCACATTCATCTATCACAATTTCACTCATCAATT
CATCCATTTAACCATTAAATACCAAAGCAATATGAGCTATACTATATATGACCAAAATG
Found at i:74472830 original size:35 final size:35
Alignment explanation
Indices: 74472790--74472860 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
74472780 AATTTAATCC
* *
74472790 ATTTAAACCTTATCAATACTCAATTTATACAATTA
1 ATTTAAACCTCATAAATACTCAATTTATACAATTA
74472825 ATTTAAACCTCATAAATACTCAATTTATACAATTA
1 ATTTAAACCTCATAAATACTCAATTTATACAATTA
74472860 A
1 A
74472861 GTCTTTTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.45, C:0.17, G:0.00, T:0.38
Consensus pattern (35 bp):
ATTTAAACCTCATAAATACTCAATTTATACAATTA
Found at i:74477568 original size:43 final size:42
Alignment explanation
Indices: 74477515--74477623 Score: 107
Period size: 43 Copynumber: 2.6 Consensus size: 42
74477505 ATCTGAGATA
* * *
74477515 TCGTGTAAGACCGTGTCTGGGACA-CAGGCCTCG-AT-TGAGATT
1 TCGTATAAGACCATGTCTGGGACATC-GGCATCGTATCT--GATT
*
74477557 TACGTATAAGACCATATCTGGGACATCGGCATCGTATCTGATT
1 T-CGTATAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
* *
74477600 TCGTGTAAGACCCTGTCTGGGACA
1 TCGTATAAGACCATGTCTGGGACA
74477624 GAGGTATCGA
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
42 21 0.38
43 31 0.55
44 3 0.05
45 1 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.28
Consensus pattern (42 bp):
TCGTATAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
Found at i:74477621 original size:42 final size:41
Alignment explanation
Indices: 74477510--74477634 Score: 119
Period size: 42 Copynumber: 3.0 Consensus size: 41
74477500 CATCTATCTG
* * *
74477510 AGATATCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATT
1 AGATTTCGTGTAAGACCATGTCTGGGACACAGGCATCGATT
* *
74477551 GAGATTTACGTATAAGACCATATCTGGGACATC-GGCATCGTATCT
1 -AGATTT-CGTGTAAGACCATGTCTGGGACA-CAGGCATCG-AT-T
* * *
74477596 -GATTTCGTGTAAGACCCTGTCTGGGACAGAGGTATCGAT
1 AGATTTCGTGTAAGACCATGTCTGGGACACAGGCATCGAT
74477635 ATTGAATTAC
Statistics
Matches: 68, Mismatches: 10, Indels: 11
0.76 0.11 0.12
Matches are distributed among these distances:
41 2 0.03
42 31 0.46
43 31 0.46
44 3 0.04
45 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (41 bp):
AGATTTCGTGTAAGACCATGTCTGGGACACAGGCATCGATT
Found at i:74484474 original size:18 final size:18
Alignment explanation
Indices: 74484453--74484487 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
74484443 TTTATAATTA
*
74484453 TTAAGTATTTTAAGTTAT
1 TTAAGAATTTTAAGTTAT
*
74484471 TTAAGAATTTTATGTTA
1 TTAAGAATTTTAAGTTA
74484488 ACAAGAAAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.54
Consensus pattern (18 bp):
TTAAGAATTTTAAGTTAT
Found at i:74484871 original size:11 final size:12
Alignment explanation
Indices: 74484855--74484883 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
74484845 CGCCACGTTC
74484855 TATCTTTCCA-T
1 TATCTTTCCATT
74484866 TATCTTTCCATT
1 TATCTTTCCATT
74484878 TATCTT
1 TATCTT
74484884 CTTTATTCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 10 0.59
12 7 0.41
ACGTcount: A:0.17, C:0.24, G:0.00, T:0.59
Consensus pattern (12 bp):
TATCTTTCCATT
Found at i:74485302 original size:17 final size:15
Alignment explanation
Indices: 74485280--74485327 Score: 53
Period size: 17 Copynumber: 3.1 Consensus size: 15
74485270 AAAAAGTGAT
*
74485280 AAAAAAAGTACAAAA
1 AAAAAAAATACAAAA
*
74485295 AAATAAAATACGAAAAA
1 AAAAAAAATAC--AAAA
74485312 AAAAAAAATA-AAAA
1 AAAAAAAATACAAAA
74485326 AA
1 AA
74485328 TTCTATGGGT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
14 6 0.21
15 9 0.32
17 13 0.46
ACGTcount: A:0.83, C:0.04, G:0.04, T:0.08
Consensus pattern (15 bp):
AAAAAAAATACAAAA
Found at i:74485317 original size:15 final size:14
Alignment explanation
Indices: 74485280--74485327 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
74485270 AAAAAGTGAT
*
74485280 AAAAAAAGTACAAA
1 AAAAAAAATACAAA
74485294 AAAATAAAATACGAAA
1 AAAA-AAAATAC-AAA
* *
74485310 AAAAAAAAAATAAA
1 AAAAAAAATACAAA
74485324 AAAA
1 AAAA
74485328 TTCTATGGGT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
14 11 0.38
15 11 0.38
16 7 0.24
ACGTcount: A:0.83, C:0.04, G:0.04, T:0.08
Consensus pattern (14 bp):
AAAAAAAATACAAA
Found at i:74488810 original size:69 final size:69
Alignment explanation
Indices: 74488728--74488865 Score: 249
Period size: 69 Copynumber: 2.0 Consensus size: 69
74488718 CTATTGCTGC
* *
74488728 TCCATTAACTGAGATTATTAAAAAATATGTGGGTTTTAAATGGGGAGAAGTTTAGGAAAAGGCTT
1 TCCATTAACTGAGATTATTAAAAAATATATGGGTTTTAAATGGGGAGAAGTTCAGGAAAAGGCTT
74488793 TTCA
66 TTCA
*
74488797 TCCATTAACTGAGATTATTAAAAAATCTATGGGTTTTAAATGGGGAGAAGTTCAGGAAAAGGCTT
1 TCCATTAACTGAGATTATTAAAAAATATATGGGTTTTAAATGGGGAGAAGTTCAGGAAAAGGCTT
74488862 TTCA
66 TTCA
74488866 AACTTTAAAG
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 66 1.00
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.33
Consensus pattern (69 bp):
TCCATTAACTGAGATTATTAAAAAATATATGGGTTTTAAATGGGGAGAAGTTCAGGAAAAGGCTT
TTCA
Found at i:74489963 original size:18 final size:18
Alignment explanation
Indices: 74489942--74489977 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
74489932 AAATTATTAT
74489942 ATTCTACTACATGTCACC
1 ATTCTACTACATGTCACC
74489960 ATTCTACTACATGTCACC
1 ATTCTACTACATGTCACC
74489978 CCCAAACAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.33, G:0.06, T:0.33
Consensus pattern (18 bp):
ATTCTACTACATGTCACC
Found at i:74491412 original size:11 final size:12
Alignment explanation
Indices: 74491396--74491424 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
74491386 TGCCACGTTC
74491396 TATCTTTCCA-T
1 TATCTTTCCATT
74491407 TATCTTTCCATT
1 TATCTTTCCATT
74491419 TATCTT
1 TATCTT
74491425 CTTTATTCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 10 0.59
12 7 0.41
ACGTcount: A:0.17, C:0.24, G:0.00, T:0.59
Consensus pattern (12 bp):
TATCTTTCCATT
Found at i:74493264 original size:43 final size:44
Alignment explanation
Indices: 74493195--74493277 Score: 116
Period size: 43 Copynumber: 1.9 Consensus size: 44
74493185 GTAATGCCTC
* * *
74493195 GTAACCCTAATCTGATGTTAATTACGGGTTAGGGGTGTTACACT
1 GTAACCCTAATCCGATGTTAATTACGGGTGAGCGGTGTTACACT
74493239 GTAACCCT-ATCCGATGTTGAA-TACGGGTGAGCGGTGTTA
1 GTAACCCTAATCCGATGTT-AATTACGGGTGAGCGGTGTTA
74493278 TAGGTTATGC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
43 25 0.71
44 10 0.29
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (44 bp):
GTAACCCTAATCCGATGTTAATTACGGGTGAGCGGTGTTACACT
Found at i:74496236 original size:13 final size:13
Alignment explanation
Indices: 74496207--74496239 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
74496197 ATTCCAAGTC
*
74496207 ATGTTTT-AAGCT
1 ATGTTTTAAAGAT
74496219 ATGTTTTAAAGAT
1 ATGTTTTAAAGAT
74496232 ATGTTTTA
1 ATGTTTTA
74496240 CACGTGCTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.30, C:0.03, G:0.15, T:0.52
Consensus pattern (13 bp):
ATGTTTTAAAGAT
Found at i:74497866 original size:42 final size:41
Alignment explanation
Indices: 74497749--74497898 Score: 178
Period size: 42 Copynumber: 3.6 Consensus size: 41
74497739 ATACCAATGG
* * *
74497749 CATATCCCAGATATGGTCTTACATGTAATCTCATATTGATAC
1 CATATCCCAAATATGGTCTTACATG-AATCTCATATCGATGC
* *
74497791 CAATAGT-CCAACTATGGTCTTACACGAAATCTCATATCGATGC
1 C-ATA-TCCCAAATATGGTCTTACATG-AATCTCATATCGATGC
74497834 CATATCCCAAATATGGTCTTACATGAAGTCTCATA-CTGATGC
1 CATATCCCAAATATGGTCTTACATGAA-TCTCATATC-GATGC
*
74497876 CATATCCCAGATATGGTCTTACA
1 CATATCCCAAATATGGTCTTACA
74497899 CATAAACTTA
Statistics
Matches: 94, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
41 4 0.04
42 55 0.59
43 34 0.36
44 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.31
Consensus pattern (41 bp):
CATATCCCAAATATGGTCTTACATGAATCTCATATCGATGC
Found at i:74502354 original size:43 final size:42
Alignment explanation
Indices: 74502301--74502386 Score: 100
Period size: 42 Copynumber: 2.0 Consensus size: 42
74502291 TTTTACATGT
* *
74502301 AATCTTATATCAATACCAATAGCCCAACTACGGTCTTACACGA
1 AATCTCATATCAATACC-ATAGCCCAAATACGGTCTTACACGA
* * ** *
74502344 AATCTCATATCGATGCCATATTCCAAATATGGTCTTACACGA
1 AATCTCATATCAATACCATAGCCCAAATACGGTCTTACACGA
74502386 A
1 A
74502387 GTATCATACT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 22 0.61
43 14 0.39
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.28
Consensus pattern (42 bp):
AATCTCATATCAATACCATAGCCCAAATACGGTCTTACACGA
Found at i:74502383 original size:42 final size:42
Alignment explanation
Indices: 74502323--74502425 Score: 127
Period size: 42 Copynumber: 2.5 Consensus size: 42
74502313 ATACCAATAG
* * *
74502323 CCCAACTACGGTCTTACACGAAATCTCATA-TCGATGCCATAT
1 CCCAAATATGGTCTTACACGAAATATCATACT-GATGCCATAT
* *
74502365 TCCAAATATGGTCTTACACGAAGTATCATACTGATGCCATAT
1 CCCAAATATGGTCTTACACGAAATATCATACTGATGCCATAT
* *
74502407 CCCAGATATGGTTTTACAC
1 CCCAAATATGGTCTTACAC
74502426 ATAAGCTTAG
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 51 0.98
43 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (42 bp):
CCCAAATATGGTCTTACACGAAATATCATACTGATGCCATAT
Found at i:74509186 original size:71 final size:71
Alignment explanation
Indices: 74509102--74509265 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
74509092 CGATTTGTCT
74509102 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
74509167 CTTTCA
66 CTTTCA
74509173 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
74509238 CTTTCA
66 CTTTCA
74509244 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
74509266 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:74509303 original size:71 final size:70
Alignment explanation
Indices: 74509102--74509299 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
74509092 CGATTTGTCT
* * * *
74509102 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
74509167 CTTTCA
65 CTTTCA
* * * *
74509173 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
74509238 CTTTCA
65 CTTTCA
* *
74509244 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
74509300 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:74512225 original size:29 final size:29
Alignment explanation
Indices: 74512193--74512268 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
74512183 CTGGAAATAT
* *
74512193 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
74512222 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
74512251 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
74512269 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:74523162 original size:71 final size:71
Alignment explanation
Indices: 74523078--74523241 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
74523068 CGATTTGTCT
74523078 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
74523143 CTTTCA
66 CTTTCA
74523149 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
74523214 CTTTCA
66 CTTTCA
74523220 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
74523242 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:74523279 original size:71 final size:70
Alignment explanation
Indices: 74523078--74523275 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
74523068 CGATTTGTCT
* * * *
74523078 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
74523143 CTTTCA
65 CTTTCA
* * * *
74523149 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
74523214 CTTTCA
65 CTTTCA
* *
74523220 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
74523276 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:74528852 original size:46 final size:47
Alignment explanation
Indices: 74528706--74528907 Score: 175
Period size: 46 Copynumber: 4.4 Consensus size: 47
74528696 GTGCTAATGT
* ** *
74528706 AAGACATGTCTGGGACATGCATCGGCCACATTATG-AGAGCCAGTGT
1 AAGACATGTCTGGGACATGCATCGGCCTCAAGATGTAGAGCCAGTGA
* * * * ** ** * *
74528752 GAGACCATGTCTAGGACATGGCATCGACATTGAGA-CAAGAGCTAGTGT
1 AAGA-CATGTCTGGGACAT-GCATCGGCCTCAAGATGTAGAGCCAGTGA
74528800 AAGACATGTCTGGGACATGCATCGGCCTCAAGATGTA-AGCCAGTGA
1 AAGACATGTCTGGGACATGCATCGGCCTCAAGATGTAGAGCCAGTGA
* *
74528846 AAGACATATCTGGGACATGCATCGG-CTACAAGATGT---GTCAGTGA
1 AAGACATGTCTGGGACATGCATCGGCCT-CAAGATGTAGAGCCAGTGA
74528890 AAGACCATGTCTGGGACA
1 AAGA-CATGTCTGGGACA
74528908 AGGCTTCGAT
Statistics
Matches: 126, Mismatches: 24, Indels: 13
0.77 0.15 0.08
Matches are distributed among these distances:
44 11 0.09
45 14 0.11
46 53 0.42
47 27 0.21
48 21 0.17
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.21
Consensus pattern (47 bp):
AAGACATGTCTGGGACATGCATCGGCCTCAAGATGTAGAGCCAGTGA
Found at i:74528944 original size:50 final size:48
Alignment explanation
Indices: 74528877--74529012 Score: 136
Period size: 47 Copynumber: 2.8 Consensus size: 48
74528867 TCGGCTACAA
* * *
74528877 GATGTGTCAGTGAAAGACCATGTCTGGGACAA-GGCTTCGATACGGATATG
1 GATGAGTCAGTGTAAGACCATGTCTGGGACAATGGCATCG--ACGGA-ATG
**
74528927 TGA-GAGTCAGTGTAAGACCATGTCTGGGA-AATGGCATCGACTTAATG
1 -GATGAGTCAGTGTAAGACCATGTCTGGGACAATGGCATCGACGGAATG
* * *
74528974 GATGAGCCAGTGTAAGACCATGTCTAGGAC-ATGACATCG
1 GATGAGTCAGTGTAAGACCATGTCTGGGACAATGGCATCG
74529013 GTATTATACC
Statistics
Matches: 74, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
46 2 0.03
47 35 0.47
48 3 0.04
49 2 0.03
50 30 0.41
51 2 0.03
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (48 bp):
GATGAGTCAGTGTAAGACCATGTCTGGGACAATGGCATCGACGGAATG
Found at i:74530683 original size:40 final size:40
Alignment explanation
Indices: 74530621--74530758 Score: 181
Period size: 40 Copynumber: 3.5 Consensus size: 40
74530611 AAACCAAGTA
* * * *
74530621 CCTTCGGGA-TTTAGCCGGATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAACCCGGATATAG-TAACTCGCACAAATG
74530660 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
* *
74530700 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
* *
74530740 CCTTTGGGACTTAGCCCGG
1 CCTTCGGGACTTAACCCGG
74530759 TTATTATCCG
Statistics
Matches: 89, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 10 0.11
40 79 0.89
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
Found at i:74538539 original size:40 final size:40
Alignment explanation
Indices: 74538469--74538643 Score: 273
Period size: 40 Copynumber: 4.4 Consensus size: 40
74538459 AAACCAAGTA
* * *
74538469 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
74538508 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
74538548 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
74538588 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
74538628 CCTTTGAGACTTAGCC
1 CCTTCGGGACTTAGCC
74538644 TGGTTATTAT
Statistics
Matches: 128, Mismatches: 6, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
39 14 0.11
40 114 0.89
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:74542873 original size:47 final size:47
Alignment explanation
Indices: 74542801--74543115 Score: 459
Period size: 47 Copynumber: 6.5 Consensus size: 47
74542791 CCCTTCGGGA
* * * * * * *
74542801 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74542848 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74542895 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74542944 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74542991 CTTATCACATATATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74543042 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74543089 CTTATCACGTATATATACACTTTCACA
1 CTTATCAC--ATATATACACTTTCACA
74543116 AATTTTAATA
Statistics
Matches: 247, Mismatches: 13, Indels: 14
0.90 0.05 0.05
Matches are distributed among these distances:
47 140 0.57
49 61 0.25
51 46 0.19
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74542963 original size:96 final size:96
Alignment explanation
Indices: 74542801--74543115 Score: 501
Period size: 96 Copynumber: 3.3 Consensus size: 96
74542791 CCCTTCGGGA
* * * * *
74542801 CTTATCACAT-T-TATACA-CTTCCACATCCATCACGTTGGCCACTCGGCCTTATCACATATATA
1 CTTATCACATATATATACACCTT-CACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
74542863 CACTTTCACATTCATCACATTGGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
74542895 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
74542960 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
74542991 CTTATCACATATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 CTTATCAC--ATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
*
74543056 ACACTTTCACGTTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
74543089 CTTATCACGTATATATACACTTTCACA
1 CTTATCACATATATATACACCTTCACA
74543116 AATTTTAATA
Statistics
Matches: 207, Mismatches: 9, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
94 10 0.05
95 1 0.00
96 98 0.47
97 3 0.01
98 95 0.46
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74547998 original size:18 final size:19
Alignment explanation
Indices: 74547967--74548002 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
74547957 CAATAAAAAT
*
74547967 ATTTTTTCATTATTTTCTA
1 ATTTTTACATTATTTTCTA
74547986 ATTTTTACA-TATTTTCT
1 ATTTTTACATTATTTTCT
74548003 TTTTAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.22, C:0.11, G:0.00, T:0.67
Consensus pattern (19 bp):
ATTTTTACATTATTTTCTA
Found at i:74557646 original size:19 final size:21
Alignment explanation
Indices: 74557600--74557650 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
74557590 ATTGATTTGT
**
74557600 TTAATTAATCATGTTTTCACC
1 TTAATTAATCATAATTTCACC
74557621 TTAATTAATCATAATTTC-CC
1 TTAATTAATCATAATTTCACC
74557641 -TAATTAATCA
1 TTAATTAATCA
74557651 ACTAATATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 10 0.36
20 2 0.07
21 16 0.57
ACGTcount: A:0.35, C:0.18, G:0.02, T:0.45
Consensus pattern (21 bp):
TTAATTAATCATAATTTCACC
Found at i:74558418 original size:20 final size:21
Alignment explanation
Indices: 74558390--74558428 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
74558380 TTCCTAAACC
74558390 TTAG-CTTTTCTTCTTTTACG
1 TTAGTCTTTTCTTCTTTTACG
* *
74558410 TTAGTTTTTTTTTCTTTTA
1 TTAGTCTTTTCTTCTTTTA
74558429 TTTTATTTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.13, G:0.08, T:0.69
Consensus pattern (21 bp):
TTAGTCTTTTCTTCTTTTACG
Found at i:74560437 original size:48 final size:48
Alignment explanation
Indices: 74560366--74560464 Score: 135
Period size: 48 Copynumber: 2.1 Consensus size: 48
74560356 ATACTCGAGA
* * *
74560366 ATCTCGCACCTGAAGTGCCAATATCATGGCCCAAAGCCAAATCAATGT
1 ATCTCACACCCGAAGTGACAATATCATGGCCCAAAGCCAAATCAATGT
* * * *
74560414 ATCTCACACCCGAAGTGATAATATCGTGGCCCGAAGCCAACTCAATGT
1 ATCTCACACCCGAAGTGACAATATCATGGCCCAAAGCCAAATCAATGT
74560462 ATC
1 ATC
74560465 ACATATACTG
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.21
Consensus pattern (48 bp):
ATCTCACACCCGAAGTGACAATATCATGGCCCAAAGCCAAATCAATGT
Found at i:74562181 original size:39 final size:39
Alignment explanation
Indices: 74562138--74562265 Score: 202
Period size: 39 Copynumber: 3.3 Consensus size: 39
74562128 GGCGTATGCC
*
74562138 CAGGCCATGTGAGGGCTTGTGAGTCACACGAGTGTGTGA
1 CAGGCCGTGTGAGGGCTTGTGAGTCACACGAGTGTGTGA
** *
74562177 CAGGCCGTGTGAGGGCTTGCAAGTCACACAAGTGTGTGA
1 CAGGCCGTGTGAGGGCTTGTGAGTCACACGAGTGTGTGA
* *
74562216 CAGGCCGTGTAAGGGCTTGTGAGTCACACGAGTGTGTGT
1 CAGGCCGTGTGAGGGCTTGTGAGTCACACGAGTGTGTGA
74562255 CAGGCCGTGTG
1 CAGGCCGTGTG
74562266 CCAGACCATG
Statistics
Matches: 79, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 79 1.00
ACGTcount: A:0.20, C:0.20, G:0.38, T:0.23
Consensus pattern (39 bp):
CAGGCCGTGTGAGGGCTTGTGAGTCACACGAGTGTGTGA
Found at i:74562502 original size:2 final size:2
Alignment explanation
Indices: 74562495--74562525 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
74562485 TATTATTCTG
74562495 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
74562526 CACATTGTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:74564040 original size:3 final size:3
Alignment explanation
Indices: 74564034--74564077 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
74564024 ATAACGTAAA
*
74564034 ATT ATT ATT ATT ATT ATT ATT ATT ATT GTT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
74564078 ATTCACTAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
ATT
Done.