Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 261 of 444
Found at i:74565553 original size:26 final size:26
Alignment explanation
Indices: 74565498--74565554 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
74565488 TATGTTTTGA
* * *
74565498 TTTTTGATTTATAATTTATTTATACT
1 TTTTAGATTTATAAATTATTTATACG
*
74565524 TTTTAGATTTTTAAATTATTT-TACAG
1 TTTTAGATTTATAAATTATTTATAC-G
74565550 TTTTA
1 TTTTA
74565555 TCCAAAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.28, C:0.04, G:0.05, T:0.63
Consensus pattern (26 bp):
TTTTAGATTTATAAATTATTTATACG
Found at i:74576227 original size:40 final size:40
Alignment explanation
Indices: 74576182--74576349 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
74576172 CGGAATACAA
*
74576182 CCGGATATAACCAC-ATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTA-GCACGAATGCCTTCGGGTATTAGC
* * *
74576222 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTATTAGC
* *
74576262 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTATTAGC
* * *
74576302 CCGGATA-AAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCACTAGCACGAA-TGCCTTCGGGTATTAGC
74576342 CCGGATAT
1 CCGGATAT
74576350 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTATTAGC
Found at i:74576322 original size:80 final size:80
Alignment explanation
Indices: 74576182--74576349 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
74576172 CGGAATACAA
* * *
74576182 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
*
74576247 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* *
74576262 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTATTAGCCCGGATATAACG--ACTAGCACAAA
*
74576325 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
74576342 CCGGATAT
1 CCGGATAT
74576350 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CCGGATATAACAACATGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:74583992 original size:22 final size:23
Alignment explanation
Indices: 74583964--74584016 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
74583954 AATTGAACTT
*
74583964 TTTTTATTAATTATATACTAC-A
1 TTTTTATTAATGATATACTACTA
* * *
74583986 TTTTTATCAATGCTTTACTACTA
1 TTTTTATTAATGATATACTACTA
74584009 TTTTTATT
1 TTTTTATT
74584017 CATTGTGCAT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 17 0.68
23 8 0.32
ACGTcount: A:0.28, C:0.11, G:0.02, T:0.58
Consensus pattern (23 bp):
TTTTTATTAATGATATACTACTA
Found at i:74584537 original size:20 final size:21
Alignment explanation
Indices: 74584502--74584540 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
74584492 TAACATGCAA
74584502 ATTAAAATAATTAAAATATTT
1 ATTAAAATAATTAAAATATTT
*
74584523 ATTAAAAT-TTTAAAATAT
1 ATTAAAATAATTAAAATAT
74584541 AATGCTTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
ATTAAAATAATTAAAATATTT
Found at i:74585693 original size:26 final size:26
Alignment explanation
Indices: 74585664--74585768 Score: 165
Period size: 26 Copynumber: 4.0 Consensus size: 26
74585654 TGATACAAAT
74585664 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
74585690 TGATAATGGATTAGGTAAATATTACA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
74585716 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
74585742 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74585768 T
1 T
74585769 AATGGGCATT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 70 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:74592845 original size:15 final size:16
Alignment explanation
Indices: 74592827--74592863 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
74592817 CAATATATAA
74592827 ATATAA-AATGATGTT
1 ATATAACAATGATGTT
74592842 ATATGAACAATGATGTT
1 ATAT-AACAATGATGTT
74592859 A-ATAA
1 ATATAA
74592864 TGTATAGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 6 0.30
16 4 0.20
17 10 0.50
ACGTcount: A:0.49, C:0.03, G:0.14, T:0.35
Consensus pattern (16 bp):
ATATAACAATGATGTT
Found at i:74596404 original size:6 final size:6
Alignment explanation
Indices: 74596393--74596418 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
74596383 TCTTTTCTGC
74596393 AATTAA AATTAA AATTAA AATTAA AA
1 AATTAA AATTAA AATTAA AATTAA AA
74596419 AGTTACATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
AATTAA
Found at i:74597014 original size:3 final size:3
Alignment explanation
Indices: 74597002--74597052 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
74596992 GTTTGAAAAA
* *
74597002 AAG AAA AAG AAG AAG AAG -AG AAG CAGG AAG -AG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG -AAG AAG AAG AAG AAG AAG AAG
*
74597046 GAG AAG A
1 AAG AAG A
74597053 GGAAAAATGG
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
2 4 0.10
3 33 0.85
4 2 0.05
ACGTcount: A:0.63, C:0.02, G:0.35, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:74597700 original size:59 final size:59
Alignment explanation
Indices: 74597601--74597739 Score: 215
Period size: 59 Copynumber: 2.4 Consensus size: 59
74597591 TGTTGTTGTT
*
74597601 TACAAATTGCTTAACACTTGGTATACATGGCTGCTGGTTAGAAAAGATAACAATTGATA
1 TACAAATTGCTTAACACTTGGTATACATGGCTGCTAGTTAGAAAAGATAACAATTGATA
* * * * *
74597660 TAGAAATTGTTTAACAGTTGGTATACATGGCTGCTAGTTAGAAAAGATAACAGTTGGTA
1 TACAAATTGCTTAACACTTGGTATACATGGCTGCTAGTTAGAAAAGATAACAATTGATA
*
74597719 TACAAATTGCTTAACATTTGG
1 TACAAATTGCTTAACACTTGG
74597740 ATAACAAATA
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
59 71 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (59 bp):
TACAAATTGCTTAACACTTGGTATACATGGCTGCTAGTTAGAAAAGATAACAATTGATA
Found at i:74598160 original size:21 final size:20
Alignment explanation
Indices: 74598136--74598190 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 20
74598126 CAGCTTCTTG
* *
74598136 ATGAGTTAGGGCAGTAGGTA
1 ATGAGTTGGGGCAGTAAGTA
74598156 TATGAGTTGGGGCAGTAAGTA
1 -ATGAGTTGGGGCAGTAAGTA
74598177 ACTGAGTTGGGGCA
1 A-TGAGTTGGGGCA
74598191 CCTTATTGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.97
ACGTcount: A:0.27, C:0.07, G:0.40, T:0.25
Consensus pattern (20 bp):
ATGAGTTGGGGCAGTAAGTA
Found at i:74599068 original size:42 final size:43
Alignment explanation
Indices: 74598907--74599084 Score: 220
Period size: 43 Copynumber: 4.2 Consensus size: 43
74598897 AAAAAAAAAC
* * * *
74598907 TCATTGCATGTATATTAAAAAATAGGCAACAG---ACCAACAA
1 TCATTGCATGCATATTAAAAAATAGTCAATAGCTTTCCAACAA
74598947 TCATTGCATGCATATTAAAAAATAGTCAATAGCTTTCCAACAA
1 TCATTGCATGCATATTAAAAAATAGTCAATAGCTTTCCAACAA
* * *
74598990 TCATTGCATGCATATTAAAAAATAGTCAACAACTTTCCAATAA
1 TCATTGCATGCATATTAAAAAATAGTCAATAGCTTTCCAACAA
* ** *
74599033 TCATTACATATATATTAAAAAA-AGTCAATAGCTTTCCAATAA
1 TCATTGCATGCATATTAAAAAATAGTCAATAGCTTTCCAACAA
*
74599075 TCACTGCATG
1 TCATTGCATG
74599085 TGATCAGCAA
Statistics
Matches: 120, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
40 29 0.24
42 25 0.21
43 66 0.55
ACGTcount: A:0.44, C:0.18, G:0.09, T:0.29
Consensus pattern (43 bp):
TCATTGCATGCATATTAAAAAATAGTCAATAGCTTTCCAACAA
Found at i:74599083 original size:85 final size:83
Alignment explanation
Indices: 74598911--74599084 Score: 226
Period size: 85 Copynumber: 2.1 Consensus size: 83
74598901 AAAAACTCAT
* * *
74598911 TGCATGTATATTAAAAAATAGGCAACAGACCAACAATCATTGCATGCATATTAAAAAATAGTCAA
1 TGCATGCATATTAAAAAATAGGCAACAGACCAACAATCATTACATACATATTAAAAAATAGTCAA
*
74598976 TAGCTTTCCAACAATCAT
66 TAGCTTTCCAACAATCAC
* * *
74598994 TGCATGCATATTAAAAAATAGTCAACA-ACTTTCCAATAATCATTACATATATATTAAAAAA-AG
1 TGCATGCATATTAAAAAATAGGCAACAGA----CCAACAATCATTACATACATATTAAAAAATAG
*
74599057 TCAATAGCTTTCCAATAATCAC
62 TCAATAGCTTTCCAACAATCAC
74599079 TGCATG
1 TGCATG
74599085 TGATCAGCAA
Statistics
Matches: 79, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
82 1 0.01
83 25 0.32
85 28 0.35
86 25 0.32
ACGTcount: A:0.44, C:0.18, G:0.09, T:0.29
Consensus pattern (83 bp):
TGCATGCATATTAAAAAATAGGCAACAGACCAACAATCATTACATACATATTAAAAAATAGTCAA
TAGCTTTCCAACAATCAC
Found at i:74600748 original size:15 final size:16
Alignment explanation
Indices: 74600723--74600756 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
74600713 TCAGATGCAT
74600723 CACTATCACTACCAGA
1 CACTATCACTACCAGA
74600739 CACT-TCACTACCAGA
1 CACTATCACTACCAGA
74600754 CAC
1 CAC
74600757 GTTTTCTCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.35, C:0.41, G:0.06, T:0.18
Consensus pattern (16 bp):
CACTATCACTACCAGA
Found at i:74601160 original size:46 final size:46
Alignment explanation
Indices: 74601050--74601152 Score: 188
Period size: 46 Copynumber: 2.2 Consensus size: 46
74601040 GGATACAAAC
*
74601050 AATGACAGATATACACAATAAACATCAGTTTAATAATGTATAATTT
1 AATGGCAGATATACACAATAAACATCAGTTTAATAATGTATAATTT
*
74601096 AATGGCAGATATACACAATAAACATCAGTTTGATAATGTATAATTT
1 AATGGCAGATATACACAATAAACATCAGTTTAATAATGTATAATTT
74601142 AATGGCAGATA
1 AATGGCAGATA
74601153 CAAACAATGG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 55 1.00
ACGTcount: A:0.46, C:0.11, G:0.13, T:0.31
Consensus pattern (46 bp):
AATGGCAGATATACACAATAAACATCAGTTTAATAATGTATAATTT
Found at i:74601320 original size:48 final size:48
Alignment explanation
Indices: 74601156--74601310 Score: 247
Period size: 48 Copynumber: 3.2 Consensus size: 48
74601146 GCAGATACAA
* *
74601156 ACAATGGCAGATATACACAATAAACATCAATTTGAAAATGACATTCAT
1 ACAATGGCAGATATACACAATAAAGATCAATTTGATAATGACATTCAT
* *
74601204 ACAATGGCAGATATACACAATAAAGATCAATTTGCTAATGACATTCAC
1 ACAATGGCAGATATACACAATAAAGATCAATTTGATAATGACATTCAT
* *
74601252 ACAATGGCAGATATACACAATAAAGATCAGTTTGATAATGGCATTCAT
1 ACAATGGCAGATATACACAATAAAGATCAATTTGATAATGACATTCAT
*
74601300 ACAATGACAGA
1 ACAATGGCAGA
74601311 GCCAAACAAT
Statistics
Matches: 98, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 98 1.00
ACGTcount: A:0.45, C:0.17, G:0.14, T:0.25
Consensus pattern (48 bp):
ACAATGGCAGATATACACAATAAAGATCAATTTGATAATGACATTCAT
Found at i:74601322 original size:64 final size:64
Alignment explanation
Indices: 74601252--74601384 Score: 221
Period size: 64 Copynumber: 2.1 Consensus size: 64
74601242 TGACATTCAC
*
74601252 ACAATGGCAGATATACACAATAAAGATCAGTTTGATAATGGCATTCATACAATGACAGAGCCAA
1 ACAATGGCAGATATACACAATAAAGATCAGTTTGATAATGGCATTCATACAATGACAGAGACAA
** * *
74601316 ACAATGGCAGATATACACAATAAAGATCAGTTTGATAATGGTGTTCATACAATGGCAGATACAA
1 ACAATGGCAGATATACACAATAAAGATCAGTTTGATAATGGCATTCATACAATGACAGAGACAA
74601380 ACAAT
1 ACAAT
74601385 AAACATCAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 64 1.00
ACGTcount: A:0.44, C:0.16, G:0.17, T:0.23
Consensus pattern (64 bp):
ACAATGGCAGATATACACAATAAAGATCAGTTTGATAATGGCATTCATACAATGACAGAGACAA
Found at i:74601356 original size:34 final size:34
Alignment explanation
Indices: 74601254--74601356 Score: 85
Period size: 32 Copynumber: 3.1 Consensus size: 34
74601244 ACATTCACAC
74601254 AATGGCAGATATACACAATAAAGATCAGTTTGAT
1 AATGGCAGATATACACAATAAAGATCAGTTTGAT
* * * * *
74601288 AATGGC--AT-TCATACAATGACAGAGCCA----AAC
1 AATGGCAGATAT-ACACAAT-AAAGA-TCAGTTTGAT
74601318 AATGGCAGATATACACAATAAAGATCAGTTTGAT
1 AATGGCAGATATACACAATAAAGATCAGTTTGAT
74601352 AATGG
1 AATGG
74601357 TGTTCATACA
Statistics
Matches: 49, Mismatches: 10, Indels: 20
0.62 0.13 0.25
Matches are distributed among these distances:
30 9 0.18
31 5 0.10
32 16 0.33
33 5 0.10
34 14 0.29
ACGTcount: A:0.44, C:0.15, G:0.18, T:0.23
Consensus pattern (34 bp):
AATGGCAGATATACACAATAAAGATCAGTTTGAT
Found at i:74601539 original size:12 final size:12
Alignment explanation
Indices: 74601522--74601561 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
74601512 CGAAATAACC
*
74601522 CTAAATTGAAAT
1 CTAAATCGAAAT
74601534 CTAAATCGAAAT
1 CTAAATCGAAAT
74601546 CTAAATC-AAATT
1 CTAAATCGAAA-T
74601558 CTAA
1 CTAA
74601562 TCCTAAATTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 3 0.12
12 23 0.88
ACGTcount: A:0.50, C:0.15, G:0.05, T:0.30
Consensus pattern (12 bp):
CTAAATCGAAAT
Found at i:74601582 original size:42 final size:42
Alignment explanation
Indices: 74601521--74601603 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 42
74601511 TCGAAATAAC
*
74601521 CCTAAATTGAAATCTAAATCGAAATCT-AAATCAAATTCTAAT
1 CCTAAATTGAAATCTAAATCGAAAT-TGAAATCAAAATCTAAT
*
74601563 CCTAAATTGAGAT-TGAAATCGAAATTGAAATCAAAATCTAA
1 CCTAAATTGAAATCT-AAATCGAAATTGAAATCAAAATCTAA
74601604 ATCAGAATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
41 2 0.05
42 35 0.95
ACGTcount: A:0.48, C:0.14, G:0.08, T:0.29
Consensus pattern (42 bp):
CCTAAATTGAAATCTAAATCGAAATTGAAATCAAAATCTAAT
Found at i:74601640 original size:12 final size:12
Alignment explanation
Indices: 74601623--74601671 Score: 71
Period size: 12 Copynumber: 4.1 Consensus size: 12
74601613 AGTGAGTGTT
* *
74601623 TCAAAATTGTAA
1 TCAAAATCGAAA
74601635 TCAAAATCGAAA
1 TCAAAATCGAAA
*
74601647 TCAAAATCAAAA
1 TCAAAATCGAAA
74601659 TCAAAATCGAAA
1 TCAAAATCGAAA
74601671 T
1 T
74601672 TAAATTTGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.57, C:0.14, G:0.06, T:0.22
Consensus pattern (12 bp):
TCAAAATCGAAA
Found at i:74601689 original size:6 final size:6
Alignment explanation
Indices: 74601633--74601671 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
74601623 TCAAAATTGT
* *
74601633 AATCAA AATCGA AATCAA AATCAA AATCAA AATCGA AAT
1 AATCAA AATCAA AATCAA AATCAA AATCAA AATCAA AAT
74601672 TAAATTTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.62, C:0.15, G:0.05, T:0.18
Consensus pattern (6 bp):
AATCAA
Found at i:74602239 original size:31 final size:29
Alignment explanation
Indices: 74602200--74602272 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 29
74602190 GGTAACTATT
*
74602200 AGTTAGTGACTGTTTTGTCACTTTTTTATA
1 AGTTAGTGACTGTTTTGTCACTTTTTGA-A
* *
74602230 ATGTTAGTGACCGTTTTGTTACTTTTTGAA
1 A-GTTAGTGACTGTTTTGTCACTTTTTGAA
74602260 AGTTAAGTGACTG
1 AGTT-AGTGACTG
74602273 AAATGAAACC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
29 3 0.08
30 10 0.27
31 24 0.65
ACGTcount: A:0.22, C:0.10, G:0.21, T:0.48
Consensus pattern (29 bp):
AGTTAGTGACTGTTTTGTCACTTTTTGAA
Found at i:74611570 original size:46 final size:46
Alignment explanation
Indices: 74611529--74611868 Score: 445
Period size: 46 Copynumber: 7.4 Consensus size: 46
74611519 TGAAATGTGT
* * * * * *
74611529 AAGAACATGGTTGAAAGATATCATGGAAACATGATATGAAATGTAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAAC
*
74611575 AAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAAC
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAAC
* * *
74611621 AAGACCATGGTTGAAAGATATCATGGAAACGTGACATGAAATGAAC
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAAC
74611667 AAGACCATGGTTGAAAGATACCATGGCAACAT-A-ATGGGAAATGAAC
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACAT--GAAATGAAC
*
74611713 AAGACCATGGTTGAAAGATACCATGGCAACAT-A-ATGGGAAATGAAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACAT--GAAATGAAC
*
74611759 AAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAAC
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAAC
* * * **
74611805 AAGATCATGGTTGAAAGATACCATGGCAAGATGACAGGAAATGAGT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAAC
* *
74611851 AAGACCGTAGTTGAAAGA
1 AAGACCATGGTTGAAAGA
74611869 CACTATGACA
Statistics
Matches: 266, Mismatches: 24, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
44 2 0.01
45 1 0.00
46 260 0.98
47 1 0.00
48 2 0.01
ACGTcount: A:0.43, C:0.13, G:0.24, T:0.19
Consensus pattern (46 bp):
AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAAC
Found at i:74617290 original size:19 final size:18
Alignment explanation
Indices: 74617261--74617308 Score: 78
Period size: 19 Copynumber: 2.6 Consensus size: 18
74617251 GTATATATTT
74617261 TAAATTTATTTAGGTAGA
1 TAAATTTATTTAGGTAGA
74617279 TAAATCTTATTTAGGTAGA
1 TAAAT-TTATTTAGGTAGA
74617298 TAAGATTTATT
1 TAA-ATTTATT
74617309 CATATTCTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.18
19 21 0.75
20 2 0.07
ACGTcount: A:0.38, C:0.02, G:0.15, T:0.46
Consensus pattern (18 bp):
TAAATTTATTTAGGTAGA
Found at i:74617384 original size:42 final size:42
Alignment explanation
Indices: 74617325--74617413 Score: 124
Period size: 42 Copynumber: 2.1 Consensus size: 42
74617315 CTAGGAATAT
* * *
74617325 TTTTGTTTTATCTTTTAGTAGTTTATTAGGACAAAGCAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAACAAAGCAACTA
* * *
74617367 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAACAAAGCAACTA
74617409 TTTTC
1 TTTTC
74617414 CCAATTAGGA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.28, C:0.08, G:0.13, T:0.51
Consensus pattern (42 bp):
TTTTCTTTTATATTTTAGTAGTTTATTAGAACAAAGCAACTA
Found at i:74620450 original size:22 final size:22
Alignment explanation
Indices: 74620422--74620470 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
74620412 GGGCAAGTGA
74620422 TCACATAATGTTCTATCGACAT
1 TCACATAATGTTCTATCGACAT
74620444 TCACATAATGTTCTATCGACAT
1 TCACATAATGTTCTATCGACAT
74620466 TCACA
1 TCACA
74620471 AAAAGGTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.33, C:0.24, G:0.08, T:0.35
Consensus pattern (22 bp):
TCACATAATGTTCTATCGACAT
Found at i:74621523 original size:19 final size:19
Alignment explanation
Indices: 74621477--74621524 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
74621467 GTATATATTT
74621477 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
74621495 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
74621514 TAAGTTTTATT
1 TAAATTTTATT
74621525 CATATTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:74621600 original size:42 final size:42
Alignment explanation
Indices: 74621541--74621629 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
74621531 CTAGGAATAT
* * *
74621541 TTTTATTTTATCTTTTAGTAGTTTATTAGGACAAGGGAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAACAAGGGAACTA
*
74621583 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAACAAGGGAACTA
74621625 TTTTC
1 TTTTC
74621630 CCAATTAGGA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.28, C:0.07, G:0.15, T:0.51
Consensus pattern (42 bp):
TTTTCTTTTATATTTTAGTAGTTTATTAGAACAAGGGAACTA
Found at i:74627780 original size:20 final size:20
Alignment explanation
Indices: 74627755--74627827 Score: 91
Period size: 20 Copynumber: 3.8 Consensus size: 20
74627745 ACCATTATGT
74627755 ATCAATTAACCCTAAATTTA
1 ATCAATTAACCCTAAATTTA
*
74627775 ATCAATTAACCCTAAACTCTAA
1 ATCAATTAACCCTAAA-T-TTA
74627797 ATCAATT---CCT-AATTTA
1 ATCAATTAACCCTAAATTTA
74627813 ATCAATTAACCCTAA
1 ATCAATTAACCCTAA
74627828 TACCCTAAAC
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
16 9 0.20
17 1 0.02
18 2 0.04
19 6 0.13
20 17 0.38
21 1 0.02
22 9 0.20
ACGTcount: A:0.44, C:0.23, G:0.00, T:0.33
Consensus pattern (20 bp):
ATCAATTAACCCTAAATTTA
Found at i:74627848 original size:34 final size:36
Alignment explanation
Indices: 74627769--74627848 Score: 103
Period size: 38 Copynumber: 2.2 Consensus size: 36
74627759 ATTAACCCTA
*
74627769 AATTTAATCAATTAACCCTAAACTCTAAATCAATTCCT
1 AATTTAATCAATTAACCCTAAACCCTAAATC-A-TCCT
74627807 AATTTAATCAATTAACCCTAATACCCTAAA-C-T-CT
1 AATTTAATCAATTAACCCTAA-ACCCTAAATCATCCT
74627841 AATTTAAT
1 AATTTAAT
74627849 ATTTAGTATT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
34 10 0.25
35 1 0.03
38 22 0.55
39 7 0.17
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (36 bp):
AATTTAATCAATTAACCCTAAACCCTAAATCATCCT
Found at i:74627968 original size:23 final size:23
Alignment explanation
Indices: 74627942--74627988 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
74627932 AAAACCTTAA
74627942 CTTAAAAAATCCTAACCCTAAAT
1 CTTAAAAAATCCTAACCCTAAAT
74627965 CTTAAAAAATCCTAACCCTAAAT
1 CTTAAAAAATCCTAACCCTAAAT
74627988 C
1 C
74627989 AATTAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.26
Consensus pattern (23 bp):
CTTAAAAAATCCTAACCCTAAAT
Found at i:74657741 original size:41 final size:41
Alignment explanation
Indices: 74657684--74657833 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
74657674 TTAGGGTTTA
*
74657684 AATCCGAGCTTGGTCTCGAAGGGTTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
74657725 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
74657766 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
74657806 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
74657834 TGAGTCAGCG
Statistics
Matches: 93, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
40 32 0.34
41 61 0.66
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.29
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:74665812 original size:41 final size:41
Alignment explanation
Indices: 74665755--74665900 Score: 204
Period size: 41 Copynumber: 3.6 Consensus size: 41
74665745 GGTTTAAATC
74665755 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATT
1 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATT
*
74665796 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAA-C
1 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATT
* * * * * * * *
74665836 CGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCATAATT
1 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATT
74665877 CGAGCTTGGTCTCGAAGGGCTTTT
1 CGAGCTTGGTCTCGAAGGGCTTTT
74665901 TGAGTCAGCG
Statistics
Matches: 88, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 31 0.35
41 57 0.65
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (41 bp):
CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATT
Found at i:74675396 original size:48 final size:48
Alignment explanation
Indices: 74675325--74675420 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
74675315 TACTAAGATT
74675325 TTGAAAGCTTACTTTGTGTGTGTTTGCATTGTTTTATAGATATCGAAG
1 TTGAAAGCTTACTTTGTGTGTGTTTGCATTGTTTTATAGATATCGAAG
74675373 TTGAAAGCTTACTTTGTGTGTGTTTGCATTGTTTTATAGATATCGAAG
1 TTGAAAGCTTACTTTGTGTGTGTTTGCATTGTTTTATAGATATCGAAG
74675421 CTACTGTGAG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (48 bp):
TTGAAAGCTTACTTTGTGTGTGTTTGCATTGTTTTATAGATATCGAAG
Found at i:74680316 original size:29 final size:29
Alignment explanation
Indices: 74680165--74680295 Score: 244
Period size: 29 Copynumber: 4.5 Consensus size: 29
74680155 GTGACGAGAT
74680165 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
74680194 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
74680223 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
74680252 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
74680281 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
74680296 GAGCTCGAAG
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 98 1.00
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:74680342 original size:87 final size:87
Alignment explanation
Indices: 74680165--74680353 Score: 229
Period size: 87 Copynumber: 2.2 Consensus size: 87
74680155 GTGACGAGAT
* *
74680165 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
* *
74680230 AAGTGTGCATGCTGGAAAAATA
66 AAGTGTGCAGGCTGGAAAAACA
* * *
74680252 TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAAGGGTATGGCAC
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGC-ATGCTCGAAAGATATGGCAC
** * * **
74680316 TGTGTGTGCGGGCT-TAAATCGCA
65 TAAGTGTGCAGGCTGGAAA-AACA
74680339 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
74680354 GAAATCGAGT
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
86 3 0.03
87 82 0.95
88 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
AAGTGTGCAGGCTGGAAAAACA
Found at i:74686177 original size:43 final size:43
Alignment explanation
Indices: 74686082--74686183 Score: 134
Period size: 43 Copynumber: 2.4 Consensus size: 43
74686072 ATCGAGATGT
* * *
74686082 GATTACATGTAAGACCATGTCTGGGACATTGATATTGTATTGA
1 GATTACGTGTAAGACCATGTCTGGGACATTGACATTGTAATGA
* *
74686125 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTTAAT-C
1 GATTACGTGTAAGACCATGTCTGGGACATTGACATTG-TAATGA
*
74686168 GATTTCGTGTAAGACC
1 GATTACGTGTAAGACC
74686184 CTGTTTGGTA
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
43 49 0.94
44 3 0.06
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGACATTGTAATGA
Found at i:74688483 original size:24 final size:23
Alignment explanation
Indices: 74688451--74688496 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
74688441 TACATAAGTC
* *
74688451 AAAGATTTCTTGATTTGAAACAT
1 AAAGATTTCTAGAATTGAAACAT
74688474 AAAGAATTTCTAGAATTGAAACA
1 AAAG-ATTTCTAGAATTGAAACA
74688497 AGGCGGAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.46, C:0.09, G:0.13, T:0.33
Consensus pattern (23 bp):
AAAGATTTCTAGAATTGAAACAT
Found at i:74690295 original size:29 final size:29
Alignment explanation
Indices: 74690271--74690364 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
74690261 TCGCACACCC
*
74690271 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
74690300 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
74690329 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
74690358 AGTGCCA
1 AGTGCCA
74690365 ATCTCGTCAC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.30
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:74690296 original size:58 final size:58
Alignment explanation
Indices: 74690234--74690364 Score: 174
Period size: 58 Copynumber: 2.3 Consensus size: 58
74690224 ATTTAAGCCC
* * * *
74690234 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCAT
* * **
74690292 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
74690350 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
74690365 ATCTCGTCAC
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
58 63 0.98
59 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:74698134 original size:29 final size:29
Alignment explanation
Indices: 74698095--74698158 Score: 119
Period size: 29 Copynumber: 2.2 Consensus size: 29
74698085 CTCGCACACC
*
74698095 GTGCCGTATATTTCCAGCATGCACACTTA
1 GTGCCATATATTTCCAGCATGCACACTTA
74698124 GTGCCATATATTTCCAGCATGCACACTTA
1 GTGCCATATATTTCCAGCATGCACACTTA
74698153 GTGCCA
1 GTGCCA
74698159 ATCTCGTCAC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (29 bp):
GTGCCATATATTTCCAGCATGCACACTTA
Found at i:74706298 original size:40 final size:40
Alignment explanation
Indices: 74706242--74706409 Score: 184
Period size: 40 Copynumber: 4.2 Consensus size: 40
74706232 CAATTGAATG
* *
74706242 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
74706283 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
74706322 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
74706362 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
74706402 ATATCCGG
1 ATATCCGG
74706410 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:74706375 original size:80 final size:79
Alignment explanation
Indices: 74706242--74706409 Score: 239
Period size: 80 Copynumber: 2.1 Consensus size: 79
74706232 CAATTGAATG
* *
74706242 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
74706307 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
74706322 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
74706386 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
74706402 ATATCCGG
1 ATATCCGG
74706410 TTGTATTCCG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 2 0.03
80 76 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:74712275 original size:80 final size:80
Alignment explanation
Indices: 74712191--74712339 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
74712181 TATGGTAACC
* * * *
74712191 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
74712255 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
74712271 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
74712336 CCGG
66 CCGG
74712340 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:74712281 original size:40 final size:38
Alignment explanation
Indices: 74712232--74712339 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
74712222 ATCACGATTT
*
74712232 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
74712272 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
74712312 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
74712340 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:74717592 original size:40 final size:40
Alignment explanation
Indices: 74717536--74717703 Score: 184
Period size: 40 Copynumber: 4.2 Consensus size: 40
74717526 CAATTGAATG
* *
74717536 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
74717577 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
74717616 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
74717656 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
74717696 ATATCCGG
1 ATATCCGG
74717704 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:74717669 original size:80 final size:79
Alignment explanation
Indices: 74717536--74717703 Score: 239
Period size: 80 Copynumber: 2.1 Consensus size: 79
74717526 CAATTGAATG
* *
74717536 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
74717601 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
74717616 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
74717680 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
74717696 ATATCCGG
1 ATATCCGG
74717704 TTGTATTCCG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 2 0.03
80 76 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:74719974 original size:40 final size:40
Alignment explanation
Indices: 74719919--74720139 Score: 320
Period size: 40 Copynumber: 5.5 Consensus size: 40
74719909 TAAGTGAACA
74719919 TCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
1 TCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
74719959 TCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
1 TCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
74719999 TCGTGCGAGTTGATATATCCGGGCTAAGA-CCGAAGGCAT
1 TCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
*
74720038 TCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCCT
1 TCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
* * * * * * * *
74720078 TTGTGCAAG-TCACCAAATCCGGGTTATGACCCGAAGGCAA
1 TCGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGCAT
* *
74720118 TCGTGCGAGTCGCTATATCCGG
1 TCGTGCGAGTTGATATATCCGG
74720140 TTAAATCCCG
Statistics
Matches: 161, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
39 41 0.25
40 120 0.75
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
TCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
Found at i:74720058 original size:79 final size:80
Alignment explanation
Indices: 74719919--74720139 Score: 320
Period size: 79 Copynumber: 2.8 Consensus size: 80
74719909 TAAGTGAACA
74719919 TCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCT
1 TCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCT
74719984 AAGACCCGAAGGCAT
66 AAGACCCGAAGGCAT
74719999 TCGTGCGAGTTGATATATCCGGGCTAAGA-CCGAAGGCATTCGTGCGAGTTGATATATCCGGGCT
1 TCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCT
*
74720063 AAGACCCGAAGGCCT
66 AAGACCCGAAGGCAT
* * * * * * * * * *
74720078 TTGTGCAAG-TCACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCGCTATATCCGG
1 TCGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGG
74720140 TTAAATCCCG
Statistics
Matches: 128, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
78 2 0.02
79 68 0.53
80 58 0.45
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (80 bp):
TCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCT
AAGACCCGAAGGCAT
Found at i:74720151 original size:119 final size:119
Alignment explanation
Indices: 74719919--74720139 Score: 327
Period size: 119 Copynumber: 1.9 Consensus size: 119
74719909 TAAGTGAACA
* * * *
74719919 TCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCT
1 TCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTCACAAATCCGGGCT
* *
74719984 AAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCGAAGGCAT
66 AAGACCCGAAGGCAATCGTGCGAGTCGATATATCCGGGCTAAGACCGAAGGCAT
* * *
74720038 TCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TCACCAAATCCGGGT
1 TCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTCA-CAAATCCGGGC
* *
74720102 TATGACCCGAAGGCAATCGTGCGAGTCGCTATATCCGG
65 TAAGACCCGAAGGCAATCGTGCGAGTCGATATATCCGG
74720140 TTAAATCCCG
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
118 2 0.02
119 88 0.98
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (119 bp):
TCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTCACAAATCCGGGCT
AAGACCCGAAGGCAATCGTGCGAGTCGATATATCCGGGCTAAGACCGAAGGCAT
Found at i:74728121 original size:40 final size:40
Alignment explanation
Indices: 74728066--74728275 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
74728056 AACATTGGAA
74728066 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
74728106 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
74728146 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
74728186 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
74728225 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
74728266 CTATATCCGG
1 ATATATCCGG
74728276 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:74729722 original size:18 final size:18
Alignment explanation
Indices: 74729695--74729730 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
74729685 AGGACTTGCA
*
74729695 TACTGCTTACTGTTACTG
1 TACTGCTTACTATTACTG
*
74729713 TACTGTTTACTATTACTG
1 TACTGCTTACTATTACTG
74729731 CAATGGGCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.47
Consensus pattern (18 bp):
TACTGCTTACTATTACTG
Found at i:74731629 original size:21 final size:21
Alignment explanation
Indices: 74731604--74731647 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
74731594 GGAATTTGAA
*
74731604 TTGAGT-AGTTGAAGGAGTGTT
1 TTGAGTGAGTTG-AGGAGGGTT
*
74731625 TTGAGTGATTTGAGGAGGGTT
1 TTGAGTGAGTTGAGGAGGGTT
74731646 TT
1 TT
74731648 CAGAAGATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.20, C:0.00, G:0.39, T:0.41
Consensus pattern (21 bp):
TTGAGTGAGTTGAGGAGGGTT
Found at i:74733459 original size:27 final size:27
Alignment explanation
Indices: 74733178--74733458 Score: 382
Period size: 27 Copynumber: 10.4 Consensus size: 27
74733168 TACCCCTACA
* *
74733178 TGATAAATTGACGATTTTGCCCTTATG
1 TGATAAAATGATGATTTTGCCCTTATG
**
74733205 TGATAAAATGATGATTTTATCCTTATG
1 TGATAAAATGATGATTTTGCCCTTATG
** * *
74733232 TGATAAAATGACAATTTTTCCCTCATG
1 TGATAAAATGATGATTTTGCCCTTATG
* *
74733259 TGATAAAATTATGATTTTGCCCTTATA
1 TGATAAAATGATGATTTTGCCCTTATG
* * *
74733286 TGATAAAATGACGATTTTTCCCTTTTG
1 TGATAAAATGATGATTTTGCCCTTATG
** *
74733313 TGATAAAACAATGATTTTGCCCTCATG
1 TGATAAAATGATGATTTTGCCCTTATG
74733340 TGATAAAATGATGATTTTGCCCTTATG
1 TGATAAAATGATGATTTTGCCCTTATG
74733367 TGATAAAATGATGATTTTGCCCTTATG
1 TGATAAAATGATGATTTTGCCCTTATG
**
74733394 TGATAAAATGATGATTTCACCCTTATG
1 TGATAAAATGATGATTTTGCCCTTATG
* *
74733421 TGATAAAATGACGATCTTGCCCTTATG
1 TGATAAAATGATGATTTTGCCCTTATG
74733448 TGATAAAATGA
1 TGATAAAATGA
74733459 CTGAAATACC
Statistics
Matches: 219, Mismatches: 35, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 219 1.00
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.39
Consensus pattern (27 bp):
TGATAAAATGATGATTTTGCCCTTATG
Found at i:74733493 original size:27 final size:27
Alignment explanation
Indices: 74733332--74733494 Score: 120
Period size: 27 Copynumber: 6.0 Consensus size: 27
74733322 AATGATTTTG
* ** *
74733332 CCCTCATGTGATAAAATGA-TGATTTTG
1 CCCTTATGTGATAAAATGACTGA-AATA
** *
74733359 CCCTTATGTGATAAAATGA-TGATTTTG
1 CCCTTATGTGATAAAATGACTGA-AATA
**
74733386 CCCTTATGTGATAAAATGA-TGATTTCA
1 CCCTTATGTGATAAAATGACTGAAAT-A
** *
74733413 CCCTTATGTGATAAAATGAC-GATCTTG
1 CCCTTATGTGATAAAATGACTGA-AATA
74733440 CCCTTATGTGATAAAATGACTGAAATA
1 CCCTTATGTGATAAAATGACTGAAATA
* *
74733467 CCCTTATAG-GATAAAATGATTGTAATA
1 CCCTTAT-GTGATAAAATGACTGAAATA
74733494 C
1 C
74733495 TCGGTAAGGT
Statistics
Matches: 122, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
26 3 0.02
27 114 0.93
28 5 0.04
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.35
Consensus pattern (27 bp):
CCCTTATGTGATAAAATGACTGAAATA
Found at i:74733876 original size:18 final size:18
Alignment explanation
Indices: 74733855--74733900 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
74733845 TACTGCTTAC
*
74733855 TGTTACTGCACTGTTTAA
1 TGTTACTGCACTATTTAA
* *
74733873 TGTTACTGAACTATTTAC
1 TGTTACTGCACTATTTAA
74733891 TGTTACTGCA
1 TGTTACTGCA
74733901 ATGGGCCAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.24, C:0.17, G:0.15, T:0.43
Consensus pattern (18 bp):
TGTTACTGCACTATTTAA
Found at i:74734914 original size:49 final size:49
Alignment explanation
Indices: 74734853--74734981 Score: 152
Period size: 49 Copynumber: 2.6 Consensus size: 49
74734843 ACATTAAATT
* * * * *
74734853 CGATGCCGTGTCCCAGAGAGGTCTTACATTGGCTTTTATATATCGAG-AC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATC-AGTAC
* * * **
74734902 CGATGCCATGTCCCAAATAGGTCTTACACTGGCTCTCATCTATCAGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATCAGTAC
74734951 CGATGCCATGTCCCAGACAGGTCTTACACTG
1 CGATGCCATGTCCCAGACAGGTCTTACACTG
74734982 ACACACAACA
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
48 2 0.03
49 66 0.97
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATCAGTAC
Found at i:74741338 original size:34 final size:34
Alignment explanation
Indices: 74741286--74741358 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 34
74741276 GCGTTACTAT
* *
74741286 TACTGTTACAGTATTGGGCTAAGGCCC-ACACTGA
1 TACTGATACAGTAATGGGCTAAGGCCCTA-ACTGA
* *
74741320 TACTGATACTGTAATGGGCTATGGCCCTAACTGA
1 TACTGATACAGTAATGGGCTAAGGCCCTAACTGA
74741354 TACTG
1 TACTG
74741359 GACTGTCACT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 33 0.97
35 1 0.03
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (34 bp):
TACTGATACAGTAATGGGCTAAGGCCCTAACTGA
Found at i:74752379 original size:41 final size:41
Alignment explanation
Indices: 74752334--74752451 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
74752324 TGAAAGATAA
74752334 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
74752375 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
74752405 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
74752446 ATGTAG
1 ATGTAG
74752452 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:74752390 original size:71 final size:71
Alignment explanation
Indices: 74752302--74752465 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
74752292 GAGATGTATC
74752302 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74752367 AGGACA
66 AGGACA
74752373 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74752438 AGGACA
66 AGGACA
74752444 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
74752466 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:74760988 original size:46 final size:46
Alignment explanation
Indices: 74760935--74761110 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
74760925 TATTTGGGCA
74760935 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
74760981 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
74761028 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
74761074 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74761111 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 66 0.59
47 33 0.30
48 2 0.02
50 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:74761090 original size:93 final size:93
Alignment explanation
Indices: 74760931--74761102 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
74760921 GGGATATTTG
* * *
74760931 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
74760996 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
74761024 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
74761089 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
74761103 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:74763813 original size:40 final size:40
Alignment explanation
Indices: 74763747--74763913 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
74763737 AAATTGAATG
* * *
74763747 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
74763786 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
74763826 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
74763866 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
74763906 ATATCCGG
1 ATATCCGG
74763914 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:74765754 original size:71 final size:71
Alignment explanation
Indices: 74765665--74765828 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
74765655 GAGATGTATC
74765665 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74765730 AGGACA
66 AGGACA
*
74765736 CCATGTAGACAAAAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74765801 AGGACA
66 AGGACA
74765807 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
74765829 AGACAAATTG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:74771585 original size:36 final size:36
Alignment explanation
Indices: 74771544--74771612 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
74771534 CTAAACTAAT
74771544 AACTCACAGAGAAAAGAATTGAGGAATTGCTTTAAG
1 AACTCACAGAGAAAAGAATTGAGGAATTGCTTTAAG
*
74771580 AACTCACAGAGAAAAGAATTGGGGAATTGCTTT
1 AACTCACAGAGAAAAGAATTGAGGAATTGCTTT
74771613 TGGGAAAATC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.42, C:0.12, G:0.23, T:0.23
Consensus pattern (36 bp):
AACTCACAGAGAAAAGAATTGAGGAATTGCTTTAAG
Found at i:74771747 original size:19 final size:19
Alignment explanation
Indices: 74771723--74771787 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 19
74771713 TTTAGTAGAG
74771723 ATCCCTAAGTTATGTTATT
1 ATCCCTAAGTTATGTTATT
* * *
74771742 ATCCCT-A-TTCAAGACTAATA
1 ATCCCTAAGTT-ATG--TTATT
74771762 ATCCCTAAGTTATGTTATT
1 ATCCCTAAGTTATGTTATT
74771781 ATCCCTA
1 ATCCCTA
74771788 TTCAAGACTA
Statistics
Matches: 35, Mismatches: 6, Indels: 10
0.69 0.12 0.20
Matches are distributed among these distances:
17 2 0.06
18 3 0.09
19 16 0.46
20 9 0.26
21 3 0.09
22 2 0.06
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.40
Consensus pattern (19 bp):
ATCCCTAAGTTATGTTATT
Found at i:74771766 original size:39 final size:39
Alignment explanation
Indices: 74771723--74771802 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
74771713 TTTAGTAGAG
74771723 ATCCCTAAGTTATGTTATTATCCCTATTCAAGACTAATA
1 ATCCCTAAGTTATGTTATTATCCCTATTCAAGACTAATA
74771762 ATCCCTAAGTTATGTTATTATCCCTATTCAAGACTAATA
1 ATCCCTAAGTTATGTTATTATCCCTATTCAAGACTAATA
74771801 AT
1 AT
74771803 GTCTAATCCC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.39
Consensus pattern (39 bp):
ATCCCTAAGTTATGTTATTATCCCTATTCAAGACTAATA
Found at i:74771767 original size:20 final size:20
Alignment explanation
Indices: 74771742--74771802 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
74771732 TTATGTTATT
74771742 ATCCCTATTCAAGACTAATA
1 ATCCCTATTCAAGACTAATA
* * *
74771762 ATCCCTAAGTT-ATG--TTATT
1 ATCCCT-A-TTCAAGACTAATA
74771781 ATCCCTATTCAAGACTAATA
1 ATCCCTATTCAAGACTAATA
74771801 AT
1 AT
74771803 GTCTAATCCC
Statistics
Matches: 30, Mismatches: 6, Indels: 10
0.65 0.13 0.22
Matches are distributed among these distances:
17 2 0.07
18 3 0.10
19 9 0.30
20 11 0.37
21 3 0.10
22 2 0.07
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (20 bp):
ATCCCTATTCAAGACTAATA
Found at i:74775012 original size:40 final size:39
Alignment explanation
Indices: 74774854--74775112 Score: 389
Period size: 39 Copynumber: 6.6 Consensus size: 39
74774844 TATTCGGACG
*
74774854 ATATCCGGGCTAAGTCCCGAAGGCATTGTGCTACTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTGTGCTATTGACT
*
74774893 ATATCCGGGCTAAGTCCCGAAGGCATTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTGTGCTATTGACT
*
74774932 ATATCCGGGCTAAGTCCCGAAGGCATTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTGTGCTATTGACT
74774971 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTGTGCTATTGACT
*
74775011 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGC-ATTGTGCTATTGACT
*
74775051 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGC-ATTGTGCT-A-TTGACT
* *
74775091 ATATCC-GGCCAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
74775113 TACTTGGGTT
Statistics
Matches: 211, Mismatches: 5, Indels: 8
0.94 0.02 0.04
Matches are distributed among these distances:
39 117 0.55
40 91 0.43
41 3 0.01
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTGTGCTATTGACT
Found at i:74782079 original size:40 final size:40
Alignment explanation
Indices: 74781951--74782170 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
74781941 TATTCGGACG
*
74781951 ATATCCGGGCTAAGTCCCGAAGGCA-TTGTGCTACTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
74781990 ATATCCGGGCTAAGTCCCGAAGGCA-TTGTTCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
74782029 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
74782069 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
74782109 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
* *
74782149 ATATCC-GGCTAAATCTCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
74782171 TACTTGGGTT
Statistics
Matches: 168, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 75 0.45
40 90 0.54
41 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:74789558 original size:29 final size:28
Alignment explanation
Indices: 74789492--74789600 Score: 128
Period size: 29 Copynumber: 3.8 Consensus size: 28
74789482 CACATACCTG
* * * *
74789492 TATATGGCCCACTAGACCCAACTATATT
1 TATATGGCCCATTAGGCCCAAATACATT
* *
74789520 CACATGGCCCATTAGGCCCAAATGACATT
1 TATATGGCCCATTAGGCCCAAAT-ACATT
*
74789549 TATATGGCCCTTTAGGCCCAAATTACATT
1 TATATGGCCCATTAGGCCCAAA-TACATT
*
74789578 TATGTGGCCCATTAGGCCCAAAT
1 TATATGGCCCATTAGGCCCAAAT
74789601 CAAATTATAT
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 19 0.28
29 48 0.71
30 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (28 bp):
TATATGGCCCATTAGGCCCAAATACATT
Found at i:74793822 original size:29 final size:29
Alignment explanation
Indices: 74793751--74793869 Score: 134
Period size: 29 Copynumber: 4.2 Consensus size: 29
74793741 CACATACCTG
* * * *
74793751 TATATGGCCCACTAGACCCAACT-ATATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* * *
74793779 CATATGGCCCATTAGGCTCAAATGACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* *
74793808 TATATGGCCCTTTAGGCCCAAATTACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
74793837 TATGTGGCCCATTAGGCCCAAATCACA-T
1 TATATGGCCCATTAGGCCCAAATCACATT
74793865 TATAT
1 TATAT
74793870 TCATGCTCAC
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 23 0.30
29 53 0.70
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.30
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:74803763 original size:60 final size:61
Alignment explanation
Indices: 74803697--74803833 Score: 215
Period size: 60 Copynumber: 2.2 Consensus size: 61
74803687 AAATGATGAT
*
74803697 GAAAAAAAGGAAAAGAAAGAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAA
1 GAAAAAAAGGAAAAAAAAGAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAA
* *
74803758 GAAAAAGAA--AAAAAAAAGAAGAGAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAA
1 GAAAAA-AAGGAAAAAAAAGAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAA
74803818 GAAAAAGAAGGAAAAA
1 GAAAAA-AAGGAAAAA
74803834 GAGCTTTGAG
Statistics
Matches: 70, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
60 57 0.81
61 6 0.09
62 7 0.10
ACGTcount: A:0.55, C:0.09, G:0.22, T:0.15
Consensus pattern (61 bp):
GAAAAAAAGGAAAAAAAAGAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAA
Found at i:74805133 original size:40 final size:39
Alignment explanation
Indices: 74805078--74805334 Score: 322
Period size: 40 Copynumber: 6.5 Consensus size: 39
74805068 CGGATGATAA
* *
74805078 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTA-TAT
74805118 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* * *
74805158 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
74805198 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
74805238 CCGGGCGAAGTCCCGAAGGCATTAGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* * *
74805278 CCGGGCTATGTCCTGAAGGCA-TTGAGCGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAT
* *
74805317 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
74805335 TACTTGGCTT
Statistics
Matches: 192, Mismatches: 22, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
38 14 0.07
39 16 0.08
40 161 0.84
41 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:74813978 original size:39 final size:39
Alignment explanation
Indices: 74813935--74814013 Score: 95
Period size: 39 Copynumber: 2.0 Consensus size: 39
74813925 TCATATTACA
* *
74813935 CATATAATAACCTATCATACAAGCATATACCACAATACT
1 CATATAATAACATAACATACAAGCATATACCACAATACT
* ** **
74813974 CATATAATCACATAACATTTAAGCATATGTCACAATACT
1 CATATAATAACATAACATACAAGCATATACCACAATACT
74814013 C
1 C
74814014 GAAAACATCT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.44, C:0.24, G:0.04, T:0.28
Consensus pattern (39 bp):
CATATAATAACATAACATACAAGCATATACCACAATACT
Found at i:74814679 original size:18 final size:18
Alignment explanation
Indices: 74814656--74814692 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
74814646 ATTTAGAGTA
74814656 AGGGTTTAGGGTACTACT
1 AGGGTTTAGGGTACTACT
74814674 AGGGTTTAGGGTACTACT
1 AGGGTTTAGGGTACTACT
74814692 A
1 A
74814693 AATTCCTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.11, G:0.32, T:0.32
Consensus pattern (18 bp):
AGGGTTTAGGGTACTACT
Found at i:74817149 original size:22 final size:22
Alignment explanation
Indices: 74817124--74817167 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
74817114 AATACAATAT
74817124 TTTTAAGCATATAAGTTATTCC
1 TTTTAAGCATATAAGTTATTCC
74817146 TTTTAAGCATATAAGTTATTCC
1 TTTTAAGCATATAAGTTATTCC
74817168 AACTCGTACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.14, G:0.09, T:0.45
Consensus pattern (22 bp):
TTTTAAGCATATAAGTTATTCC
Found at i:74817688 original size:39 final size:39
Alignment explanation
Indices: 74817624--74817722 Score: 110
Period size: 39 Copynumber: 2.5 Consensus size: 39
74817614 TATTCACTTT
* * * * *
74817624 CAAGCATATATCATATTACAT-ATATAATTACCTATCATA
1 CAAGCATATATCACAATAC-TCATATAATCACATAACATA
*
74817663 CAAGCATATATCACAATACTCATATAATCACATAACATT
1 CAAGCATATATCACAATACTCATATAATCACATAACATA
* *
74817702 TAAGCATATGTCACAATACTC
1 CAAGCATATATCACAATACTC
74817723 GAAACCATCC
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
38 1 0.02
39 50 0.98
ACGTcount: A:0.43, C:0.21, G:0.04, T:0.31
Consensus pattern (39 bp):
CAAGCATATATCACAATACTCATATAATCACATAACATA
Found at i:74820010 original size:17 final size:18
Alignment explanation
Indices: 74819990--74820030 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
74819980 ATAAACATAA
74819990 ATCATTCATTTCAT-TAT-
1 ATCATT-ATTTCATGTATC
*
74820007 ATCAATATTTCATGTATC
1 ATCATTATTTCATGTATC
74820025 ATCATT
1 ATCATT
74820031 TTCATGAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 7 0.35
17 8 0.40
18 5 0.25
ACGTcount: A:0.32, C:0.17, G:0.02, T:0.49
Consensus pattern (18 bp):
ATCATTATTTCATGTATC
Found at i:74826340 original size:28 final size:26
Alignment explanation
Indices: 74826284--74826396 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 26
74826274 AGCATGGCTG
* *
74826284 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
74826310 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
74826338 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
74826365 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
74826393 CCAG
1 CCAG
74826397 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
26 6 0.08
27 38 0.50
28 32 0.42
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:74826369 original size:55 final size:54
Alignment explanation
Indices: 74826284--74826396 Score: 156
Period size: 55 Copynumber: 2.1 Consensus size: 54
74826274 AGCATGGCTG
*
74826284 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAA-TCGTGGCAGAACCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAT-CAGATAATTCGTGGCAGAACCA
* * * *
74826338 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAACCA
74826393 CCAG
1 CCAG
74826397 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
54 19 0.37
55 33 0.63
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAACCA
Found at i:74827840 original size:24 final size:24
Alignment explanation
Indices: 74827824--74827883 Score: 120
Period size: 24 Copynumber: 2.5 Consensus size: 24
74827814 CCCTTACCTG
74827824 CTCCTAAATCCTATCCCTTATCAA
1 CTCCTAAATCCTATCCCTTATCAA
74827848 CTCCTAAATCCTATCCCTTATCAA
1 CTCCTAAATCCTATCCCTTATCAA
74827872 CTCCTAAATCCT
1 CTCCTAAATCCT
74827884 CTCCTGACAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.28, C:0.38, G:0.00, T:0.33
Consensus pattern (24 bp):
CTCCTAAATCCTATCCCTTATCAA
Found at i:74831772 original size:20 final size:19
Alignment explanation
Indices: 74831723--74831774 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 19
74831713 GTCCCTGTTC
*
74831723 CACTACGGTGCCTTTGTTTG
1 CACTACGGTG-CTTTGTCTG
*
74831743 CAC-ATTGGTGCTGTTGTCTG
1 CACTA-CGGTGCT-TTGTCTG
74831763 CACTACGGTGCT
1 CACTACGGTGCT
74831775 CTTGCTAGGC
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
19 3 0.12
20 22 0.85
21 1 0.04
ACGTcount: A:0.12, C:0.25, G:0.27, T:0.37
Consensus pattern (19 bp):
CACTACGGTGCTTTGTCTG
Found at i:74832550 original size:20 final size:20
Alignment explanation
Indices: 74832525--74832565 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
74832515 TCAACCCCCA
74832525 TCAGCTCACTTGAGCTCGAT
1 TCAGCTCACTTGAGCTCGAT
** *
74832545 TCAGCTCGTTTGAGCTTGAT
1 TCAGCTCACTTGAGCTCGAT
74832565 T
1 T
74832566 TTAGCCCGTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (20 bp):
TCAGCTCACTTGAGCTCGAT
Found at i:74835529 original size:29 final size:29
Alignment explanation
Indices: 74835497--74835574 Score: 84
Period size: 29 Copynumber: 2.7 Consensus size: 29
74835487 AAACCCTCCG
* *
74835497 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
74835526 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
74835555 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACCCAGTGCCA
74835575 ATCTCGTCAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.23, C:0.33, G:0.17, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACCCAGTGCCATATATTTCC
Found at i:74843372 original size:29 final size:29
Alignment explanation
Indices: 74843340--74843417 Score: 84
Period size: 29 Copynumber: 2.7 Consensus size: 29
74843330 AAACCCTCCG
* *
74843340 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
74843369 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
74843398 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACCCAGTGCCA
74843418 ATCTCGTCAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.23, C:0.33, G:0.17, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACCCAGTGCCATATATTTCC
Found at i:74844583 original size:14 final size:16
Alignment explanation
Indices: 74844564--74844595 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
74844554 GCATCCATGC
74844564 TCATTT-TTT-TTTTT
1 TCATTTCTTTATTTTT
74844578 TCATTTCTTTATTTTT
1 TCATTTCTTTATTTTT
74844594 TC
1 TC
74844596 TACATAATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 3 0.19
16 7 0.44
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.78
Consensus pattern (16 bp):
TCATTTCTTTATTTTT
Found at i:74845883 original size:20 final size:20
Alignment explanation
Indices: 74845843--74845951 Score: 62
Period size: 22 Copynumber: 5.2 Consensus size: 20
74845833 TGAATGTGAA
*
74845843 AAAAGAAAAGAAAATGAAAAAG
1 AAAAGAAAA-ACAA-GAAAAAG
74845865 AAAAGAAAAACAAGAAAAAG
1 AAAAGAAAAACAAGAAAAAG
* *
74845885 -AATGCAAAAA-ATAGCAAAAG
1 AAAAG-AAAAACA-AGAAAAAG
* *
74845905 AAAAAAAAGAACGAGTAAAAA-
1 AAAAGAAA-AACAAG-AAAAAG
*
74845926 ATAAAAAAAAGAGCAAGAAAAAG
1 A-AAAGAAAA-A-CAAGAAAAAG
74845949 AAA
1 AAA
74845952 TTAGAAAAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
19 4 0.06
20 22 0.32
21 11 0.16
22 28 0.41
23 4 0.06
ACGTcount: A:0.75, C:0.05, G:0.16, T:0.05
Consensus pattern (20 bp):
AAAAGAAAAACAAGAAAAAG
Found at i:74845946 original size:22 final size:23
Alignment explanation
Indices: 74845900--74845951 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
74845890 AAAAAATAGC
*
74845900 AAAAGAAAAAAAAGAACGAGTAA
1 AAAAGAAAAAAAAGAACAAGTAA
* *
74845923 AAAATAAAAAAAAGAGCAAG--A
1 AAAAGAAAAAAAAGAACAAGTAA
74845944 AAAAGAAA
1 AAAAGAAA
74845952 TTAGAAAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 8 0.32
23 17 0.68
ACGTcount: A:0.77, C:0.04, G:0.15, T:0.04
Consensus pattern (23 bp):
AAAAGAAAAAAAAGAACAAGTAA
Found at i:74853838 original size:185 final size:184
Alignment explanation
Indices: 74853627--74853997 Score: 598
Period size: 185 Copynumber: 2.0 Consensus size: 184
74853617 ACATCAAGTC
* *
74853627 CTTGAACTATTTCTATTTCAACAATTTAGTCCCTAATCGCGAAATTCATCAAAAATCACTTGACA
1 CTTGAACTATTTCTATTTCAACAATTTAGTCCCTAATCGCGAAATTCATAAAAAATCACTTAACA
* * ** *
74853692 AAATACTTTTAAATACCAACCAATAATCCAAATTGATCATTTAACATCTAAAATCACAAAGATTC
66 AAATAATTTTAAATACAAAAAAATAATCCAAATTCATCATTTAACATCTAAAATCACAAAGATTC
* *
74853757 ATTAATGGAAACATTCAAAATCTTTAACAGTTTCAAAAATAAAGGTAAGGGCTAG
131 ATTAATGAAAAC-TTCAAAATCTTTAACAGTTTCAAAAACAAAGGTAAGGGCTAG
**
74853812 CTTGAACTATTTCTATTTCAACAATTTAGTCTTTAATCGCGAAATTCATAAAAAATCACTTAACA
1 CTTGAACTATTTCTATTTCAACAATTTAGTCCCTAATCGCGAAATTCATAAAAAATCACTTAACA
* * *
74853877 AAATAATTTTAAATACAAAAAAATAATTCAAATTCATCATTTAACATCTAAAATCACAAATATTT
66 AAATAATTTTAAATACAAAAAAATAATCCAAATTCATCATTTAACATCTAAAATCACAAAGATTC
*
74853942 ATTAATGAAAACTTCAAAATCTTTAACAGTTTCAAAAACAAAGGTACGGGCTAG
131 ATTAATGAAAACTTCAAAATCTTTAACAGTTTCAAAAACAAAGGTAAGGGCTAG
74853996 CT
1 CT
74853998 GGACCTAGTT
Statistics
Matches: 171, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
184 42 0.25
185 129 0.75
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.32
Consensus pattern (184 bp):
CTTGAACTATTTCTATTTCAACAATTTAGTCCCTAATCGCGAAATTCATAAAAAATCACTTAACA
AAATAATTTTAAATACAAAAAAATAATCCAAATTCATCATTTAACATCTAAAATCACAAAGATTC
ATTAATGAAAACTTCAAAATCTTTAACAGTTTCAAAAACAAAGGTAAGGGCTAG
Found at i:74869834 original size:29 final size:28
Alignment explanation
Indices: 74869798--74869879 Score: 110
Period size: 28 Copynumber: 2.9 Consensus size: 28
74869788 GCATGAATAT
*
74869798 AATGTGATTTAGGCTTAATGGGCCACATA
1 AATGTGATTT-GGCCTAATGGGCCACATA
* *
74869827 AATGTGATTTGGCCTAAAGGGCCATATA
1 AATGTGATTTGGCCTAATGGGCCACATA
*
74869855 AATGTGATTTGGGCCTAATAGGCCA
1 AATGTGATTT-GGCCTAATGGGCCA
74869880 TGTGAATATA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 25 0.53
29 22 0.47
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (28 bp):
AATGTGATTTGGCCTAATGGGCCACATA
Found at i:74872722 original size:52 final size:50
Alignment explanation
Indices: 74872656--74872780 Score: 162
Period size: 50 Copynumber: 2.4 Consensus size: 50
74872646 ATGAACAAAT
* * *
74872656 GAGTTACTTAATGCATGATTTAATTTAATGATTCAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGATTTAATTT-ATGATGCAAAC-TTAACTAACATGA
*
74872708 GAGTTACATAATGCATG-TCATAATTTATGATGCAAACTTAACTAACATGA
1 GAGTTACATAATGCATGAT-TTAATTTATGATGCAAACTTAACTAACATGA
*
74872758 GAGCTACATAATGCATGACTTTA
1 GAGTTACATAATGCATGA-TTTA
74872781 TTAAATGCAG
Statistics
Matches: 64, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
50 28 0.44
51 13 0.20
52 23 0.36
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (50 bp):
GAGTTACATAATGCATGATTTAATTTATGATGCAAACTTAACTAACATGA
Found at i:74874502 original size:42 final size:42
Alignment explanation
Indices: 74874435--74874596 Score: 137
Period size: 42 Copynumber: 3.7 Consensus size: 42
74874425 CGTTTCCTAG
* * * *
74874435 ATGCCATAGTCCAACTATGGCCTTACACATCTTCACATAAT-A
1 ATGCCATAGACCAACTATGGTCTTACACATATTAACAT-ATCA
* * ** *
74874477 ATTCCATAGCCCAGTTATGGTCTTACACATATTAACATATCG
1 ATGCCATAGACCAACTATGGTCTTACACATATTAACATATCA
* *
74874519 ATGCCATAGACCAACTATGGTCTTACACGTAATCACATATCACATATCG
1 ATGCCATAGACCAACTATGGTCTTACAC---AT---AT-TAACATATCA
*
74874568 ATGCCATAGACCAGCTATGGTCTTACACA
1 ATGCCATAGACCAACTATGGTCTTACACA
74874597 GAATCCAATA
Statistics
Matches: 98, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
41 2 0.02
42 55 0.56
45 2 0.02
46 1 0.01
48 2 0.02
49 36 0.37
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (42 bp):
ATGCCATAGACCAACTATGGTCTTACACATATTAACATATCA
Found at i:74874575 original size:49 final size:49
Alignment explanation
Indices: 74874502--74874714 Score: 234
Period size: 50 Copynumber: 4.3 Consensus size: 49
74874492 TATGGTCTTA
* * *
74874502 CACATATTAACATATCGATGCCATAGACCAACTATGGTCTTACACGTAAT
1 CACATAATCACATATCGATGCCATAGACCAGCTATGGTCTTACACG-AAT
74874552 CACAT-ATCACATATCGATGCCATAGACCAGCTATGGTCTTACACAGAAT
1 CACATAATCACATATCGATGCCATAGACCAGCTATGGTCTTACAC-GAAT
* * * * *
74874601 C-CAATAATCACATAACGATGCCATAGCCCACCTATAGTCTTATACGGAAT
1 CAC-ATAATCACATATCGATGCCATAGACCAGCTATGGTCTTACAC-GAAT
* * * *
74874651 CACATAATCACATA-CTGATGCCATAGCCCAGCTATGATCTTATAAGGAAAT
1 CACATAATCACATATC-GATGCCATAGACCAGCTATGGTCTTA-CACG-AAT
74874702 CACATAATCACAT
1 CACATAATCACAT
74874715 CTTGCCATGA
Statistics
Matches: 142, Mismatches: 14, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
48 1 0.01
49 43 0.30
50 80 0.56
51 18 0.13
ACGTcount: A:0.37, C:0.26, G:0.12, T:0.25
Consensus pattern (49 bp):
CACATAATCACATATCGATGCCATAGACCAGCTATGGTCTTACACGAAT
Found at i:74874653 original size:99 final size:100
Alignment explanation
Indices: 74874511--74874692 Score: 269
Period size: 99 Copynumber: 1.8 Consensus size: 100
74874501 ACACATATTA
* * *
74874511 ACATATCGATGCCATAGACCAACTATGGTCTTACACGTAATCACAT-ATCACATA-TCGATGCCA
1 ACATAACGATGCCATAGACCAACTATAGTCTTACACGGAATCACATAATCACATACT-GATGCCA
*
74874574 TAGACCAGCTATGGTCTTACACAGAATCCAATAATC
65 TAGACCAGCTATGATCTTACACAGAATCCAATAATC
* * *
74874610 ACATAACGATGCCATAGCCCACCTATAGTCTTATACGGAATCACATAATCACATACTGATGCCAT
1 ACATAACGATGCCATAGACCAACTATAGTCTTACACGGAATCACATAATCACATACTGATGCCAT
*
74874675 AGCCCAGCTATGATCTTA
66 AGACCAGCTATGATCTTA
74874693 TAAGGAAATC
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
99 40 0.55
100 32 0.44
101 1 0.01
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.25
Consensus pattern (100 bp):
ACATAACGATGCCATAGACCAACTATAGTCTTACACGGAATCACATAATCACATACTGATGCCAT
AGACCAGCTATGATCTTACACAGAATCCAATAATC
Found at i:74877451 original size:49 final size:49
Alignment explanation
Indices: 74877397--74877578 Score: 220
Period size: 49 Copynumber: 3.7 Consensus size: 49
74877387 CTGGTACGCA
* *
74877397 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* *
74877446 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* * ** * * ** *
74877495 TAGTAGCCTGCACTTAGTACTGCACACGTGATCACTGTTTTCGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAATTATCCGGTACACG
*
74877546 TAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
74877579 TCACAATAGA
Statistics
Matches: 115, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 76 0.66
50 2 0.02
51 37 0.32
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
Found at i:74879743 original size:15 final size:15
Alignment explanation
Indices: 74879695--74879761 Score: 66
Period size: 15 Copynumber: 4.5 Consensus size: 15
74879685 TAAAGATAAC
*
74879695 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
*
74879709 AAGAAATCCTAG-ATA
1 AAGAAA-CCCAGAATA
*
74879724 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
* *
74879739 AAGAAACCTAGAGTA
1 AAGAAACCCAGAATA
74879754 AAGAAACC
1 AAGAAACC
74879762 GAAGATACGA
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
14 10 0.23
15 32 0.74
16 1 0.02
ACGTcount: A:0.57, C:0.16, G:0.16, T:0.10
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:74879748 original size:29 final size:30
Alignment explanation
Indices: 74879695--74879761 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
74879685 TAAAGATAAC
*
74879695 AAGAAAACCGAATAAAGAAATCCTAGA-TA
1 AAGAAACCCGAATAAAGAAATCCTAGAGTA
*
74879724 GAGAAACCCAGAATAAAGAAA-CCTAGAGTA
1 AAGAAACCC-GAATAAAGAAATCCTAGAGTA
74879754 AAGAAACC
1 AAGAAACC
74879762 GAAGATACGA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 13 0.39
30 20 0.61
ACGTcount: A:0.57, C:0.16, G:0.16, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGAATAAAGAAATCCTAGAGTA
Found at i:74882849 original size:48 final size:49
Alignment explanation
Indices: 74882767--74882987 Score: 320
Period size: 48 Copynumber: 4.5 Consensus size: 49
74882757 CTGGTACGCA
* * *
74882767 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
*
74882816 TAGTAGCCTGCAC-TAGTACTACACACGTGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
74882864 TAGTAGCCTGCACTTAGTACTACACACGTGACC-ATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* * * * ** *
74882912 TAGTAGCCTGCACTTAGTACTACACACGTGATCACTGTTTTCGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAAT-TATCCGGTACACG
74882962 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
74882988 TGCGACCTCA
Statistics
Matches: 158, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
48 91 0.58
49 33 0.21
50 34 0.22
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:74882930 original size:97 final size:98
Alignment explanation
Indices: 74882754--74882994 Score: 353
Period size: 97 Copynumber: 2.5 Consensus size: 98
74882744 TAGCCAAAGC
* *
74882754 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACGTAG
74882819 TAGCCTGCACTAGTACTACACACGTGACCAAT-
66 TAGCCTGCACTAGTACTACACACGTGACCAATG
* * *
74882851 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-ATTATCCGGTACACGTAG
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACGTAG
* *
74882915 TAGCCTGCACTTAGTACTACACACGTGATCACTG
66 TAGCCTGCAC-TAGTACTACACACGTGACCAATG
* * *
74882949 T-TTTCGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TATCT-GGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACC
74882995 TCACAATAGA
Statistics
Matches: 128, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
96 28 0.22
97 63 0.49
98 37 0.29
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.26
Consensus pattern (98 bp):
TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACGTAG
TAGCCTGCACTAGTACTACACACGTGACCAATG
Found at i:74887190 original size:68 final size:68
Alignment explanation
Indices: 74887081--74887239 Score: 291
Period size: 68 Copynumber: 2.3 Consensus size: 68
74887071 TGGTGCCGAG
74887081 TGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGAT
1 TGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGAT
74887146 AAA
66 AAA
*
74887149 TGTAGCTAGGTCACATGTGTGATACTGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGAT
1 TGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGAT
74887214 AAA
66 AAA
* *
74887217 TGTAGCTAGGTCGCATGAGTGAT
1 TGTAGCTAGGTCACATGTGTGAT
74887240 TCCAAGTGAA
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 88 1.00
ACGTcount: A:0.31, C:0.14, G:0.30, T:0.25
Consensus pattern (68 bp):
TGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGAT
AAA
Found at i:74887313 original size:66 final size:67
Alignment explanation
Indices: 74887116--74887313 Score: 192
Period size: 68 Copynumber: 2.9 Consensus size: 67
74887106 GGGATGTATC
* * *
74887116 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATA-C-TG-GA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
* *
74887178 TGTATC-
62 AGGA-CA
*
74887184 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
74887249 AGGACA
62 AGGACA
* *
74887255 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
74887314 TTCACCATGT
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
66 24 0.21
67 9 0.08
68 55 0.47
69 1 0.01
70 2 0.02
71 25 0.22
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:74895968 original size:33 final size:33
Alignment explanation
Indices: 74895926--74895991 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
74895916 TTGATGAGAG
74895926 GATATGTATGATATTACGATACTGTTTCTTCTA
1 GATATGTATGATATTACGATACTGTTTCTTCTA
* *
74895959 GATATGTATGATATTATGATACTGTTTTTTCTA
1 GATATGTATGATATTACGATACTGTTTCTTCTA
74895992 CTTAATGCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.27, C:0.09, G:0.15, T:0.48
Consensus pattern (33 bp):
GATATGTATGATATTACGATACTGTTTCTTCTA
Found at i:74896190 original size:15 final size:15
Alignment explanation
Indices: 74896166--74896234 Score: 81
Period size: 15 Copynumber: 4.7 Consensus size: 15
74896156 AATCGTATCT
74896166 TGGGTTTCTTTATTC
1 TGGGTTTCTTTATTC
*
74896181 TGGATTTCTTTATTC
1 TGGGTTTCTTTATTC
74896196 TGGGTTT-TTCTA-TC
1 TGGGTTTCTT-TATTC
74896210 TTGGGTTTCTTTATTC
1 -TGGGTTTCTTTATTC
*
74896226 -GGTTTTCTT
1 TGGGTTTCTT
74896235 GTCATCTTTA
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
14 12 0.26
15 31 0.66
16 4 0.09
ACGTcount: A:0.07, C:0.13, G:0.19, T:0.61
Consensus pattern (15 bp):
TGGGTTTCTTTATTC
Found at i:74901497 original size:42 final size:42
Alignment explanation
Indices: 74901451--74901601 Score: 160
Period size: 42 Copynumber: 3.4 Consensus size: 42
74901441 ATTCCATAGT
*
74901451 CCAACTATGGTCTTACACATCTTCACATAAT-GATGCCACAAC
1 CCAACTATGGTCTTACACATATTCACAT-ATCGATGCCACAAC
* *
74901493 CCAACTATGGTCTTACACATATTCACATATCGATGCCATAGC
1 CCAACTATGGTCTTACACATATTCACATATCGATGCCACAAC
* * *
74901535 CCAGCTATGGTCTTACACGTAATCACATATCACATATCGATGCCATAGC
1 CCAACTATGGTCTTACAC---AT---AT-TCACATATCGATGCCACAAC
*
74901584 CCAGCTATGGTCTTACAC
1 CCAACTATGGTCTTACAC
74901602 GGAATCACAT
Statistics
Matches: 97, Mismatches: 4, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
41 2 0.02
42 53 0.55
45 2 0.02
48 2 0.02
49 38 0.39
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.27
Consensus pattern (42 bp):
CCAACTATGGTCTTACACATATTCACATATCGATGCCACAAC
Found at i:74901640 original size:50 final size:50
Alignment explanation
Indices: 74901515--74901727 Score: 338
Period size: 50 Copynumber: 4.3 Consensus size: 50
74901505 TTACACATAT
* *
74901515 TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACAT-A
1 TCACATACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATGA
*
74901564 TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATGA
1 TCACATACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATGA
* *
74901614 TCACATACCGATGCCATAGCCTAGCTATGGTCTTACGCGGAATCACATGA
1 TCACATACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATGA
* * *
74901664 TCACATACCGATGCCATAGCCCAACTATGGTCTTACATGGAATCACATAA
1 TCACATACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATGA
*
74901714 TCACATACCAATGC
1 TCACATACCGATGC
74901728 TTATAAGTAA
Statistics
Matches: 153, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
49 47 0.31
50 106 0.69
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (50 bp):
TCACATACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATGA
Found at i:74905656 original size:28 final size:27
Alignment explanation
Indices: 74905593--74905662 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
74905583 ATAGTGAGTC
74905593 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
74905620 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
74905648 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74905663 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:74917566 original size:55 final size:56
Alignment explanation
Indices: 74917501--74917615 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
74917491 AGCATGGCTG
* *
74917501 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
74917557 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
74917612 CCAG
1 CCAG
74917616 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:74917578 original size:27 final size:27
Alignment explanation
Indices: 74917526--74917615 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
74917516 GTGACAGAGT
74917526 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
74917555 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
74917582 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
74917610 CACCAG
1 CACCAG
74917616 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:74917768 original size:28 final size:28
Alignment explanation
Indices: 74917721--74917785 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
74917711 AAATTAACCC
*
74917721 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
74917749 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
74917777 TAGGGGTAT
1 TAGGGGTAT
74917786 TCTAGTACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:74919808 original size:25 final size:26
Alignment explanation
Indices: 74919780--74919837 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
74919770 TCCGATATAT
74919780 GGCTCTTC-GGAGCTTCCTGATTAAA
1 GGCTCTTCAGGAGCTTCCTGATTAAA
* *
74919805 GGCTCTTTCATGAGCTTTCTGATTAAA
1 GGCTC-TTCAGGAGCTTCCTGATTAAA
74919832 GGCTCT
1 GGCTCT
74919838 CTAGAACTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 5 0.17
26 4 0.14
27 20 0.69
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.36
Consensus pattern (26 bp):
GGCTCTTCAGGAGCTTCCTGATTAAA
Found at i:74919900 original size:24 final size:24
Alignment explanation
Indices: 74919832--74919934 Score: 93
Period size: 24 Copynumber: 4.2 Consensus size: 24
74919822 TCTGATTAAA
* * *
74919832 GGCTCTCTAGAACTTTCTGATATT
1 GGCTCTCTAGAGCTTTCCGTTATT
* * *
74919856 GGCTCACTTGAAGCTTCCCGTTATT
1 GGCTCTCTAG-AGCTTTCCGTTATT
*
74919881 GG-T-TCGTATGAGCTTTCCGTTAAT
1 GGCTCTC-TA-GAGCTTTCCGTTATT
74919905 GGCTCTCTAGAGCTTTCCGTTACTT
1 GGCTCTCTAGAGCTTTCCGTTA-TT
74919930 GGCTC
1 GGCTC
74919935 ACATGAGCTT
Statistics
Matches: 62, Mismatches: 11, Indels: 11
0.74 0.13 0.13
Matches are distributed among these distances:
23 1 0.02
24 37 0.60
25 22 0.35
26 2 0.03
ACGTcount: A:0.16, C:0.24, G:0.21, T:0.39
Consensus pattern (24 bp):
GGCTCTCTAGAGCTTTCCGTTATT
Found at i:74919946 original size:24 final size:24
Alignment explanation
Indices: 74919852--74919944 Score: 89
Period size: 24 Copynumber: 3.8 Consensus size: 24
74919842 AACTTTCTGA
* *
74919852 TATTGGCTCACTTGAAGCTTCCCGT
1 TATTGGCTCACATG-AGCTTTCCGT
* **
74919877 TATTGGTTCGTATGAGCTTTCCGT
1 TATTGGCTCACATGAGCTTTCCGT
* *
74919901 TAATGGCTCTC-TAGAGCTTTCCGT
1 TATTGGCTCACAT-GAGCTTTCCGT
74919925 TACTTGGCTCACATGAGCTT
1 TA-TTGGCTCACATGAGCTT
74919945 CCTGTTTACA
Statistics
Matches: 54, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
23 1 0.02
24 29 0.54
25 23 0.43
26 1 0.02
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.39
Consensus pattern (24 bp):
TATTGGCTCACATGAGCTTTCCGT
Found at i:74920593 original size:2 final size:2
Alignment explanation
Indices: 74920586--74920618 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
74920576 TTTTGATGTG
*
74920586 TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
74920619 GGTATCATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:74921610 original size:13 final size:13
Alignment explanation
Indices: 74921594--74921618 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74921584 TATTTTAAAT
74921594 TAAAAATAAAAAA
1 TAAAAATAAAAAA
74921607 TAAAAATAAAAA
1 TAAAAATAAAAA
74921619 TTCTAAAAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
TAAAAATAAAAAA
Found at i:74925638 original size:25 final size:25
Alignment explanation
Indices: 74925610--74925670 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
74925600 CTGGATATTA
*
74925610 GCTCGTATGAGCTTCCTGTTATATG-
1 GCTCGTATGAGCTTCCTATT-TATGT
* *
74925635 GCTCGAAAGAGCTTCCTATTTATGT
1 GCTCGTATGAGCTTCCTATTTATGT
74925660 GCTCGTATGAG
1 GCTCGTATGAG
74925671 TATTCCTGAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
24 4 0.13
25 26 0.87
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.36
Consensus pattern (25 bp):
GCTCGTATGAGCTTCCTATTTATGT
Found at i:74934288 original size:50 final size:50
Alignment explanation
Indices: 74934205--74934299 Score: 145
Period size: 50 Copynumber: 1.9 Consensus size: 50
74934195 CTACTCGCTC
* *
74934205 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATGCGCACA
1 AATGCCTTCGGGACATAGCCCGGATATAATAACTCGCACAAATGCGCACA
* * *
74934255 AATGCCTTTGGGACTTAGCCCGGATGTAATAACTCGCACAAATGC
1 AATGCCTTCGGGACATAGCCCGGATATAATAACTCGCACAAATGC
74934300 CTTCGGGACT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 40 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.21
Consensus pattern (50 bp):
AATGCCTTCGGGACATAGCCCGGATATAATAACTCGCACAAATGCGCACA
Found at i:74934349 original size:41 final size:41
Alignment explanation
Indices: 74934247--74934354 Score: 148
Period size: 40 Copynumber: 2.7 Consensus size: 41
74934237 CTCGCACCAA
* **
74934247 TGCGCACAAATGCCTTTGGGACTTAGCCCGGATGTAATAAC
1 TGCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAATAAC
* *
74934288 T-CGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTCAC
1 TGCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAATAAC
74934328 TAGCGCA-AAATGCCTTCGGGACTTAGC
1 T-GCGCACAAATGCCTTCGGGACTTAGC
74934355 TCGGTTATCA
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
40 35 0.58
41 21 0.35
42 4 0.07
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (41 bp):
TGCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAATAAC
Found at i:74942410 original size:40 final size:40
Alignment explanation
Indices: 74942360--74942489 Score: 224
Period size: 40 Copynumber: 3.2 Consensus size: 40
74942350 GACTTATAGT
* * *
74942360 CCGCAAGCTTTGTGCTAGAAATAGATATCCGGGTTAAATC
1 CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
74942400 CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
1 CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
*
74942440 CAGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
1 CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
74942480 CCGCAGGCTT
1 CCGCAGGCTT
74942490 AATACAGGTG
Statistics
Matches: 85, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 85 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
Done.