Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 262 of 444
Found at i:74945490 original size:33 final size:33
Alignment explanation
Indices: 74945453--74945603 Score: 94
Period size: 33 Copynumber: 4.7 Consensus size: 33
74945443 TACCCAAATG
* * *
74945453 GTACAATTTGAAAAGGTTATGTACACCTTGTGT
1 GTACAACTTGAAAAGGTAAGGTACACCTTGTGT
* * *
74945486 GTAC-ACTTG-AAAGGTTAGGTATACTTTGTGT
1 GTACAACTTGAAAAGGTAAGGTACACCTTGTGT
* * * * * *
74945517 ATACCA-TATGACAAGGAAAGGTATACTTTGTGT
1 GTACAACT-TGAAAAGGTAAGGTACACCTTGTGT
* * * **
74945550 GTACCACTTGGAAAGG-AATGTACACCTTAAGT
1 GTACAACTTGAAAAGGTAAGGTACACCTTGTGT
* *
74945582 GTACAACTAGAAAAGGAAAGGT
1 GTACAACTTGAAAAGGTAAGGT
74945604 CCATCGGAAA
Statistics
Matches: 93, Mismatches: 20, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
31 23 0.25
32 31 0.33
33 38 0.41
34 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (33 bp):
GTACAACTTGAAAAGGTAAGGTACACCTTGTGT
Found at i:74948224 original size:28 final size:27
Alignment explanation
Indices: 74948161--74948230 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
74948151 ATAGTGAGTC
74948161 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
74948188 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
74948216 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74948231 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:74956035 original size:28 final size:27
Alignment explanation
Indices: 74955972--74956041 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
74955962 ATAGTGAGTC
74955972 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
74955999 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
74956027 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74956042 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:74963773 original size:28 final size:27
Alignment explanation
Indices: 74963710--74963779 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
74963700 ATAGTGAGTC
74963710 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
74963737 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
74963765 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74963780 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:74971598 original size:28 final size:27
Alignment explanation
Indices: 74971535--74971604 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
74971525 ATAGTGAGTC
74971535 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
74971562 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
74971590 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74971605 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:74975392 original size:26 final size:27
Alignment explanation
Indices: 74975349--74975403 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
74975339 CTCTTTTTTT
* *
74975349 AAAACAAAAGAAATAATAGAATAACAA
1 AAAACAAAAGAAACAATAAAATAACAA
* *
74975376 AAAATAAAA-AAACAATAAAATAATAA
1 AAAACAAAAGAAACAATAAAATAACAA
74975402 AA
1 AA
74975404 GAAATCCTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.78, C:0.05, G:0.04, T:0.13
Consensus pattern (27 bp):
AAAACAAAAGAAACAATAAAATAACAA
Found at i:74984536 original size:40 final size:40
Alignment explanation
Indices: 74984481--74984688 Score: 274
Period size: 40 Copynumber: 5.2 Consensus size: 40
74984471 TGAATGATAC
* *
74984481 CCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
74984521 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
74984561 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *** *
74984601 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
74984641 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
74984681 CC-GGCTAA
1 CCGGGCTAA
74984689 ATTCTGAAGA
Statistics
Matches: 148, Mismatches: 20, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 5 0.03
40 143 0.97
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:74984912 original size:24 final size:24
Alignment explanation
Indices: 74984878--74984943 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 24
74984868 TGTGTGTGTT
* *
74984878 TATGATGATGA-AGTGTGAAGTAA
1 TATGATTATGAGAATGTGAAGTAA
* *
74984901 GTATGATTATGAGAATGTGTATTAA
1 -TATGATTATGAGAATGTGAAGTAA
74984926 TATGATTATGAGAATGTG
1 TATGATTATGAGAATGTG
74984944 TATTAATAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 28 0.76
25 9 0.24
ACGTcount: A:0.36, C:0.00, G:0.27, T:0.36
Consensus pattern (24 bp):
TATGATTATGAGAATGTGAAGTAA
Found at i:74984944 original size:24 final size:24
Alignment explanation
Indices: 74984902--74984951 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
74984892 GTGAAGTAAG
74984902 TATGATTATGAGAATGTGTATTAA
1 TATGATTATGAGAATGTGTATTAA
74984926 TATGATTATGAGAATGTGTATTAA
1 TATGATTATGAGAATGTGTATTAA
74984950 TA
1 TA
74984952 AAGTGATTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.00, G:0.20, T:0.42
Consensus pattern (24 bp):
TATGATTATGAGAATGTGTATTAA
Found at i:74993352 original size:37 final size:36
Alignment explanation
Indices: 74993302--74993388 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
74993292 TACAAAGTCT
*
74993302 TACCCGGACATAATCTCCACACGTAGTCATTGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
74993338 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
74993375 TCACCCGGAACATA
1 T-ACCCGG-ACATA
74993389 TTTCCAAGTT
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 1 0.02
37 41 0.87
38 5 0.11
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:74993527 original size:49 final size:49
Alignment explanation
Indices: 74993457--74993756 Score: 555
Period size: 49 Copynumber: 6.1 Consensus size: 49
74993447 TTTACCACAT
*
74993457 ATATATATACACTTTCGCATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
74993506 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
74993555 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
74993604 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
74993653 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
74993702 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
74993751 ATATAT
1 ATATAT
74993757 TATTATGTAC
Statistics
Matches: 246, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 246 1.00
ACGTcount: A:0.29, C:0.27, G:0.10, T:0.34
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:74996582 original size:40 final size:42
Alignment explanation
Indices: 74996533--74996635 Score: 108
Period size: 41 Copynumber: 2.5 Consensus size: 42
74996523 GACTCGCTCG
* * *
74996533 ATTGTCTTCGGGACA-TAACCCGG-TTATAGTGA-TTCGCACA
1 ATTGCCTTCGGGACATTAACCCGGATT-TAGTCACTTAGCACA
*
74996573 ATTGCCTTCGGGA-ATTAGCCCGGATTTAGTCACTTAGCACA
1 ATTGCCTTCGGGACATTAACCCGGATTTAGTCACTTAGCACA
* *
74996614 ATAGCCTTCGGGAC-TTAGCCCG
1 ATTGCCTTCGGGACATTAACCCG
74996636 AATACCATTC
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
39 1 0.02
40 24 0.44
41 29 0.54
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.28
Consensus pattern (42 bp):
ATTGCCTTCGGGACATTAACCCGGATTTAGTCACTTAGCACA
Found at i:74997565 original size:40 final size:40
Alignment explanation
Indices: 74997377--74997802 Score: 675
Period size: 40 Copynumber: 10.8 Consensus size: 40
74997367 CCAGCATGAT
* * * *
74997377 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
*
74997417 TGCTCTTC-GAATTTAG-CCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
*
74997455 TGCTCTTCGGAATTTAG-CCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
74997494 TGCTCTT-GGAACTTAG-CCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
* *
74997532 TACTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
74997572 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
*
74997612 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
74997652 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCA-GAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
* *
74997691 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
* *
74997731 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
* *
74997771 TGCTCTTCGGAACTTAGTCCGGATACATCATT
1 TGCTCTTCGGAACTTAGCCCGGATATATCATT
74997803 CTCAATTCTC
Statistics
Matches: 368, Mismatches: 14, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
38 64 0.17
39 87 0.24
40 217 0.59
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
Found at i:74997731 original size:119 final size:119
Alignment explanation
Indices: 74997377--74997802 Score: 673
Period size: 119 Copynumber: 3.6 Consensus size: 119
74997367 CCAGCATGAT
* * * *
74997377 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTC-GAATTTAG-CCGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCATTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
*
74997440 TATCATTAGCACGAATGCTCTTCGGAATTTAGCCGGATATATCATTAGCACGAA
66 TATCATTAGCACGAATGCTCTTCGGAACTTAGCCGGATATATCATTAGCACGAA
* * *
74997494 TGCTCTT-GGAACTTAG-CCGGATATATCATTAGCACGAATACTCTTCGGAATTTAGCCCGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCATTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
74997557 TATCATTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
66 TATCATTAGCACGAATGCTCTTCGGAACTTAG-CCGGATATATCATTAGCACGAA
* *
74997612 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCATTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
*
74997677 TATCATTAGCA-GAATGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
66 TATCATTAGCACGAATGCTCTTCGGAACTTAG-CCGGATATATCATTAGCACGAA
* *
74997731 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCATTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
*
74997796 CATCATT
66 TATCATT
74997803 CTCAATTCTC
Statistics
Matches: 288, Mismatches: 16, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
115 27 0.09
116 15 0.05
117 45 0.16
118 29 0.10
119 116 0.40
120 56 0.19
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (119 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCATTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
TATCATTAGCACGAATGCTCTTCGGAACTTAGCCGGATATATCATTAGCACGAA
Found at i:74999731 original size:37 final size:36
Alignment explanation
Indices: 74999681--74999767 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
74999671 TACGAAGTCT
74999681 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
74999717 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
74999754 TCACCCGGAACATA
1 T-ACCCGG-ACATA
74999768 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:74999900 original size:49 final size:49
Alignment explanation
Indices: 74999835--75000122 Score: 465
Period size: 49 Copynumber: 6.1 Consensus size: 49
74999825 TTTACCACAT
*
74999835 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
74999884 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
74999933 ATATATATACACTTTCACATTCAT--CA-----C---AGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
74999972 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
75000021 ATATATATACA-TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
75000069 ATATATATACA-TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
75000117 ATATAT
1 ATATAT
75000123 TATTATGTAC
Statistics
Matches: 224, Mismatches: 5, Indels: 21
0.90 0.02 0.08
Matches are distributed among these distances:
39 36 0.16
41 1 0.00
42 1 0.00
46 1 0.00
47 2 0.01
48 90 0.40
49 93 0.42
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:74999965 original size:39 final size:39
Alignment explanation
Indices: 74999921--75000047 Score: 157
Period size: 39 Copynumber: 3.0 Consensus size: 39
74999911 ATCGGCCATT
74999921 AGGCCTTATCACATATATATACACTTTCACATTCATCAC
1 AGGCCTTATCACATATATATACACTTTCACATTCATCAC
74999960 AGGCCTTATCACATATATATACACTTTCACATTCATCACGTCGGCC
1 AGGCCTTATCACATATATATACACTTTCACATTCATCA-------C
75000006 ATTAGGCCTTATCACATATATATACA-TTTCACATTCATCAC
1 ---AGGCCTTATCACATATATATACACTTTCACATTCATCAC
75000047 A
1 A
75000048 TCGGCCATTA
Statistics
Matches: 78, Mismatches: 0, Indels: 21
0.79 0.00 0.21
Matches are distributed among these distances:
38 1 0.01
39 38 0.49
41 1 0.01
46 1 0.01
48 14 0.18
49 23 0.29
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.33
Consensus pattern (39 bp):
AGGCCTTATCACATATATATACACTTTCACATTCATCAC
Found at i:74999967 original size:88 final size:89
Alignment explanation
Indices: 74999871--75000122 Score: 384
Period size: 88 Copynumber: 2.8 Consensus size: 89
74999861 CGTCGGCCAT
74999871 TAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
1 TAGGCCTTATCACATATATATACA-TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
74999936 TATATACACTTTCACATTCAT-CA-C
65 TATATACA-TTTCACATTCATACACC
*
74999960 -AGGCCTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATA
1 TAGGCCTTATCACATATATATACA-TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
75000024 TATATACATTTCACATTCATCACATCGGCC
65 TATATACATTTCACATTCAT-ACA----CC
75000054 ATTAGGCCTTATCACATATATATACATTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 --TAGGCCTTATCACATATATATACATTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
75000119 ATAT
64 ATAT
75000123 TATTATGTAC
Statistics
Matches: 150, Mismatches: 3, Indels: 13
0.90 0.02 0.08
Matches are distributed among these distances:
87 12 0.08
88 70 0.47
89 2 0.01
94 1 0.01
96 42 0.28
97 23 0.15
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (89 bp):
TAGGCCTTATCACATATATATACATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
ATATACATTTCACATTCATACACC
Found at i:75000055 original size:48 final size:49
Alignment explanation
Indices: 74999960--75000122 Score: 303
Period size: 48 Copynumber: 3.4 Consensus size: 49
74999950 CATTCATCAC
*
74999960 AGGCCTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATT
1 AGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT
75000009 AGGCCTTATCACATATATATACA-TTTCACATTCATCACATCGGCCATT
1 AGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT
75000057 AGGCCTTATCACATATATATACA-TTTCACATTCATCACATCGGCCATT
1 AGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT
75000105 AGGCCTTATCACATATAT
1 AGGCCTTATCACATATAT
75000123 TATTATGTAC
Statistics
Matches: 113, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
48 90 0.80
49 23 0.20
ACGTcount: A:0.31, C:0.27, G:0.09, T:0.33
Consensus pattern (49 bp):
AGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT
Found at i:75004167 original size:40 final size:40
Alignment explanation
Indices: 75004120--75004323 Score: 279
Period size: 40 Copynumber: 5.1 Consensus size: 40
75004110 CGGGCTTTAA
** *
75004120 CCGGATATAGCCACTCACTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
** *
75004160 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
75004200 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
* *
75004240 CCGGA-ATTAGTAACTCGCACAAACGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCACACAAATGCCTTCGGGACTTAGC
*
75004280 CCGGA-ATTAGTCACT-AGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCA-CACAAATGCCTTCGGGACTTAGC
75004320 CCGG
1 CCGG
75004324 TTATCATCCG
Statistics
Matches: 148, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
39 1 0.01
40 147 0.99
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
Found at i:75007706 original size:22 final size:22
Alignment explanation
Indices: 75007678--75007719 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
75007668 TGCCCTTGGA
75007678 GTTAGAACATAGAGCTTACTGG
1 GTTAGAACATAGAGCTTACTGG
75007700 GTTAGAACATAGAGCTTACT
1 GTTAGAACATAGAGCTTACT
75007720 AGGCTCTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (22 bp):
GTTAGAACATAGAGCTTACTGG
Found at i:75008921 original size:21 final size:21
Alignment explanation
Indices: 75008888--75008948 Score: 97
Period size: 21 Copynumber: 3.0 Consensus size: 21
75008878 CTCTTGAAAT
75008888 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
75008908 AGGGCAATACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
75008929 AGGGCAACACGCCAGTGTGG
1 AGGGCAACACGCCCGTGTGG
75008949 TCATTATAAC
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
20 5 0.14
21 32 0.86
ACGTcount: A:0.23, C:0.26, G:0.39, T:0.11
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:75010374 original size:47 final size:45
Alignment explanation
Indices: 75010310--75010433 Score: 135
Period size: 47 Copynumber: 2.7 Consensus size: 45
75010300 CTCGAGGCCA
* *
75010310 ATGCATGTCTCAGACATGTCTTACACTAGCTCTCGTCTCAATG-CT-G
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTC--AT-AATGTCTCG
* *
75010356 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTTGTCG
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATG-TCTCG
*
75010404 ATGCATGTCCTAGACATGTCTTACACTAGC
1 ATGCATGTCCCAGACATGTCTTACACTAGC
75010434 ACACAAATAT
Statistics
Matches: 67, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
45 4 0.06
46 16 0.24
47 27 0.40
48 20 0.30
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (45 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATGTCTCG
Found at i:75010410 original size:140 final size:139
Alignment explanation
Indices: 75010173--75010430 Score: 333
Period size: 140 Copynumber: 1.8 Consensus size: 139
75010163 AAGCTGACAC
** *
75010173 CATGTCTCAGACAAGGTCTTACACTAGCTTTCACATATCCGTGCTGATGCCATGTCCTAGACATG
1 CATGTCTCAGACAAGGTCTTACACTAGC-TTCACATATCAATGCTGATGCCATGTCCCAGACATG
75010238 GCTTACACTGACACATCTCGTAGTCGATGCATGTCCCAAACATGTCTTACACTGGCTTATATCTC
65 GCTTACACTGACACATCTCGTAGTCGATGCATGTCCCAAACATGTCTTACACTGGCTTATATCTC
75010303 GAGGCCAATG
130 GAGGCCAATG
* * * *
75010313 CATGTCTCAGAC-ATGTCTTACACTAGC-TCTCGTCTCAATGCTGATGCCATGTCCCAGACATGG
1 CATGTCTCAGACAAGGTCTTACACTAGCTTCACATATCAATGCTGATGCCATGTCCCAGACATGG
* * * * * *
75010376 TCTTACACTGGCTC-TCATAATGTTGTCGATGCATGTCCTAGACATGTCTTACACT
66 -CTTACACTGACACATC-T--CGTAGTCGATGCATGTCCCAAACATGTCTTACACT
75010431 AGCACACAAA
Statistics
Matches: 101, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
137 32 0.32
138 12 0.12
139 14 0.14
140 43 0.43
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (139 bp):
CATGTCTCAGACAAGGTCTTACACTAGCTTCACATATCAATGCTGATGCCATGTCCCAGACATGG
CTTACACTGACACATCTCGTAGTCGATGCATGTCCCAAACATGTCTTACACTGGCTTATATCTCG
AGGCCAATG
Found at i:75012108 original size:27 final size:27
Alignment explanation
Indices: 75012078--75012238 Score: 118
Period size: 27 Copynumber: 6.0 Consensus size: 27
75012068 TCATTTTTCC
* * *
75012078 CTACAGGGGTATGTCGATCATTTTACA
1 CTACAAGGGTATTTCGATAATTTTACA
*
75012105 CTACAAAGGTATTTC-AGTAATTTTACA
1 CTACAAGGGTATTTCGA-TAATTTTACA
*
75012132 CTATAAGGGTATTTCGATAATTTTACA
1 CTACAAGGGTATTTCGATAATTTTACA
* * * *
75012159 -AATCGAGGGTGTTTCAATAATTTTACA
1 CTA-CAAGGGTATTTCGATAATTTTACA
* * *
75012186 -AATCGAA-GGTATTTTGGTAATTTTACA
1 CTA-C-AAGGGTATTTCGATAATTTTACA
*
75012213 -AATCAAGGGTATTTCG-TAATTTTACA
1 CTA-CAAGGGTATTTCGATAATTTTACA
75012239 AATCGAGGGT
Statistics
Matches: 112, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
26 14 0.12
27 96 0.86
28 2 0.02
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (27 bp):
CTACAAGGGTATTTCGATAATTTTACA
Found at i:75012285 original size:53 final size:55
Alignment explanation
Indices: 75012112--75012660 Score: 598
Period size: 53 Copynumber: 10.3 Consensus size: 55
75012102 ACACTACAAA
* * * * *
75012112 GGTATTTCAGTAATTTTACACTAT-AAGGGTATTTCGATAATTTTACAAATC-GAG
1 GGTATTTCAGTAATTTTACA-AATCGAGGGTATTTTGGTAATTTCACAAATCAGAG
* * * *
75012166 GGTGTTTCAATAATTTTACAAATCGAAGGTATTTTGGTAATTTTACAAATCA-AG
1 GGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGGTAATTTCACAAATCAGAG
* *
75012220 GGTATTTC-GTAATTTTACAAATCGAGGGT-GTTTGGTAATTTCACAAATCTG-G
1 GGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGGTAATTTCACAAATCAGAG
* * **
75012272 GGTATTTTAGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCAC-AATC-GAG
1 GGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGGTAATTTCACAAATCAGAG
* * * **
75012325 GGTATTTTAGTAATTTTACAAATTGAAGGTATTTCAGTAATTTCAC-AATC-GAG
1 GGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGGTAATTTCACAAATCAGAG
* * *
75012378 GGTATTTC-GATAATTTTACAAATCGAGGATATTTTGGTAATTTTACAAAT-TGAG
1 GGTATTTCAG-TAATTTTACAAATCGAGGGTATTTTGGTAATTTCACAAATCAGAG
* * * * *
75012432 GGTATTTCAATAATTTCAC-AATCGAGAGTATTTCGGTAATTTTACAAATCAG-G
1 GGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGGTAATTTCACAAATCAGAG
* *
75012485 GGTATTTC-GATAATTTTACAAATCGAGGGTATTTTGGTAATTTCAC-AAT-TGAT
1 GGTATTTCAG-TAATTTTACAAATCGAGGGTATTTTGGTAATTTCACAAATCAGAG
* * *
75012538 AGTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTCAC-AATCA-AA
1 GGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGGTAATTTCACAAATCAGAG
* * * *
75012591 GGTATTTCGGTAATTTTACAAATTGGGGGTATTTTGGTAATTTTACAAATCA-AG
1 GGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGGTAATTTCACAAATCAGAG
75012645 GGTATTTCAGTAATTT
1 GGTATTTCAGTAATTT
75012661 CTCTTTATTA
Statistics
Matches: 427, Mismatches: 51, Indels: 34
0.83 0.10 0.07
Matches are distributed among these distances:
52 29 0.07
53 268 0.63
54 130 0.30
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (55 bp):
GGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGGTAATTTCACAAATCAGAG
Found at i:75012286 original size:133 final size:134
Alignment explanation
Indices: 75012149--75012661 Score: 646
Period size: 133 Copynumber: 3.8 Consensus size: 134
75012139 GGTATTTCGA
* * *
75012149 TAATTTTACAAATCGAGGGTGTTTCAATAATTTTACAAATCGAAGGTATTTTGGTAATTTTACAA
1 TAATTTTACAAATCGAGGGTATTTCAATAATTTCAC-AATCGAAGGTATTTCGGTAATTTTACAA
*
75012214 ATCAAGGGTATTTCGTAATTTTACAAATCGAGGGTGTTT-GGTAATTTCACAAATCTG-GGGTAT
65 ATCAAGGGTATTTCGTAATTTTACAAATCGAGGGTATTTCGGTAATTTCACAAATCTGAGGGTAT
75012277 TTTAG
130 TTTAG
* * * **
75012282 TAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAATCGAGGGTATTTTAGTAATTTTACAAA
1 TAATTTTACAAATCGAGGGTATTTCAATAATTTCACAATCGAAGGTATTTCGGTAATTTTACAAA
* * * * *
75012347 TTGAA-GGTATTTCAGTAATTTCAC-AATCGAGGGTATTTCGATAATTTTACAAATC-GAGGATA
66 -TCAAGGGTATTTC-GTAATTTTACAAATCGAGGGTATTTCGGTAATTTCACAAATCTGAGGGTA
*
75012409 TTTTGG
129 TTTTAG
*
75012415 TAATTTTACAAATTGAGGGTATTTCAATAATTTCACAATCG-AGAGTATTTCGGTAATTTTACAA
1 TAATTTTACAAATCGAGGGTATTTCAATAATTTCACAATCGAAG-GTATTTCGGTAATTTTACAA
* * **
75012479 ATCAGGGGTATTTCGATAATTTTACAAATCGAGGGTATTTTGGTAATTTCAC-AAT-TGATAGTA
65 ATCAAGGGTATTTCG-TAATTTTACAAATCGAGGGTATTTCGGTAATTTCACAAATCTGAGGGTA
*
75012542 TTTCAG
129 TTTTAG
* * *
75012548 TAATTTTACAAATCGAGGGTATTTTAGTAATTTCACAATCAAAGGTATTTCGGTAATTTTACAAA
1 TAATTTTACAAATCGAGGGTATTTCAATAATTTCACAATCGAAGGTATTTCGGTAATTTTACAAA
*** * * *
75012613 TTGGGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTC
66 TCAAGGGTA-TTTCGTAATTTTACAAATCGAGGGTATTTCGGTAATTTC
75012662 TCTTTATTAT
Statistics
Matches: 331, Mismatches: 38, Indels: 22
0.85 0.10 0.06
Matches are distributed among these distances:
132 53 0.16
133 249 0.75
134 29 0.09
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (134 bp):
TAATTTTACAAATCGAGGGTATTTCAATAATTTCACAATCGAAGGTATTTCGGTAATTTTACAAA
TCAAGGGTATTTCGTAATTTTACAAATCGAGGGTATTTCGGTAATTTCACAAATCTGAGGGTATT
TTAG
Found at i:75012661 original size:80 final size:80
Alignment explanation
Indices: 75012110--75012660 Score: 594
Period size: 80 Copynumber: 6.9 Consensus size: 80
75012100 TTACACTACA
* * * *
75012110 AAGGTATTTCAGTAATTTTACACTATAAGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTCA
1 AAGGTATTTCAGTAATTTTACAAT-TGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCA
*
75012175 ATAATTTTACAAATCG
65 GTAATTTTACAAATCG
** ** * *
75012191 AAGGTATTTTGGTAATTTTACAAATCAAGGGTATTTC-GTAATTTTACAAATCGAGGGTGTTT-G
1 AAGGTATTTCAGTAATTTTAC-AATTGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCA
*
75012254 GTAATTTCACAAATCTG
65 GTAATTTTACAAATC-G
* * * * *
75012271 -GGGTATTTTAGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCAC-AATCGAGGGTATTTTA
1 AAGGTATTTCAGTAATTTTAC-AATTGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCA
*
75012334 GTAATTTTACAAATTG
65 GTAATTTTACAAATCG
* * * * **
75012350 AAGGTATTTCAGTAATTTCACAATCGAGGGTATTTCGATAATTTTACAAATCGAGGATATTTTGG
1 AAGGTATTTCAGTAATTTTACAATTGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAG
*
75012415 TAATTTTACAAATTG
66 TAATTTTACAAATCG
* * * * *
75012430 AGGGTATTTCAATAATTTCACAATCGAGAGTATTTCGGTAATTTTACAAATC-AGGGGTATTTC-
1 AAGGTATTTCAGTAATTTTACAATTGAGGGTATTTCGGTAATTTTACAAATCGA-GGGTATTTCA
75012493 GATAATTTTACAAATCG
65 G-TAATTTTACAAATCG
* ** * ** * *
75012510 AGGGTATTTTGGTAATTTCACAATTGATAGTATTTCAGTAATTTTACAAATCGAGGGTATTTTAG
1 AAGGTATTTCAGTAATTTTACAATTGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAG
* *
75012575 TAATTTCAC-AATCA
66 TAATTTTACAAATCG
* * * *
75012589 AAGGTATTTCGGTAATTTTACAAATTGGGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCA
1 AAGGTATTTCAGTAATTTTAC-AATTGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCA
75012654 GTAATTT
65 GTAATTT
75012661 CTCTTTATTA
Statistics
Matches: 407, Mismatches: 52, Indels: 23
0.84 0.11 0.05
Matches are distributed among these distances:
79 105 0.26
80 268 0.66
81 32 0.08
82 2 0.00
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (80 bp):
AAGGTATTTCAGTAATTTTACAATTGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAG
TAATTTTACAAATCG
Found at i:75013013 original size:29 final size:28
Alignment explanation
Indices: 75012969--75013054 Score: 109
Period size: 29 Copynumber: 3.0 Consensus size: 28
75012959 TATTTATTTG
*
75012969 GCCCCTTTAGGCCCAATCTTGTTCATAT
1 GCCCCTTTAGGCCCAATCTTGTTCACAT
* *
75012997 GACCCCTTTAGGTCCAATCTCGTTCACAT
1 G-CCCCTTTAGGCCCAATCTTGTTCACAT
* * *
75013026 GGCCCATCAGGCCCAATCTTGTTCACAT
1 GCCCCTTTAGGCCCAATCTTGTTCACAT
75013054 G
1 G
75013055 GCCCATCAAG
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
28 24 0.49
29 25 0.51
ACGTcount: A:0.20, C:0.34, G:0.16, T:0.30
Consensus pattern (28 bp):
GCCCCTTTAGGCCCAATCTTGTTCACAT
Found at i:75013049 original size:28 final size:28
Alignment explanation
Indices: 75012977--75013099 Score: 138
Period size: 28 Copynumber: 4.4 Consensus size: 28
75012967 TGGCCCCTTT
* * * *
75012977 AGGCCCAATCTTGTTCATATGACCCCTTT
1 AGGCCCAATCTTGTTCACATG-GCCCATC
* *
75013006 AGGTCCAATCTCGTTCACATGGCCCATC
1 AGGCCCAATCTTGTTCACATGGCCCATC
75013034 AGGCCCAATCTTGTTCACATGGCCCATC
1 AGGCCCAATCTTGTTCACATGGCCCATC
* * * *
75013062 AAGCCCAATCATATTCATATGGCCCATC
1 AGGCCCAATCTTGTTCACATGGCCCATC
*
75013090 AAGCCCAATC
1 AGGCCCAATC
75013100 ACTTCCCACT
Statistics
Matches: 82, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
28 64 0.78
29 18 0.22
ACGTcount: A:0.25, C:0.34, G:0.15, T:0.26
Consensus pattern (28 bp):
AGGCCCAATCTTGTTCACATGGCCCATC
Found at i:75015514 original size:13 final size:13
Alignment explanation
Indices: 75015492--75015524 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
75015482 AAGGGTTTGT
75015492 TTAT-TAAACTAA
1 TTATCTAAACTAA
75015504 TTATCTAAACTAA
1 TTATCTAAACTAA
*
75015517 TTAACTAA
1 TTATCTAA
75015525 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:75018438 original size:11 final size:11
Alignment explanation
Indices: 75018399--75018455 Score: 53
Period size: 12 Copynumber: 4.9 Consensus size: 11
75018389 AAAAAAATTG
75018399 AAATGAAAATAA
1 AAAT-AAAATAA
* *
75018411 TAATCAAAAGAA
1 AAAT-AAAATAA
75018423 AAATAAGAAT-A
1 AAATAA-AATAA
75018434 AAATAAAAATAA
1 AAAT-AAAATAA
75018446 AAATAAAATA
1 AAATAAAATA
75018456 TGAGGATTCA
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
11 16 0.43
12 21 0.57
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.18
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:75018454 original size:17 final size:17
Alignment explanation
Indices: 75018399--75018455 Score: 69
Period size: 17 Copynumber: 3.3 Consensus size: 17
75018389 AAAAAAATTG
* *
75018399 AAATGAAAATAATAATCA
1 AAATAAAAATAAAAAT-A
* *
75018417 AAAGAAAAATAAGAATA
1 AAATAAAAATAAAAATA
75018434 AAATAAAAATAAAAATA
1 AAATAAAAATAAAAATA
75018451 AAATA
1 AAATA
75018456 TGAGGATTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
17 21 0.62
18 13 0.38
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.18
Consensus pattern (17 bp):
AAATAAAAATAAAAATA
Found at i:75023847 original size:13 final size:13
Alignment explanation
Indices: 75023825--75023857 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
75023815 AAGGGTTTAT
75023825 TTAT-TAAACTAA
1 TTATCTAAACTAA
75023837 TTATCTAAACTAA
1 TTATCTAAACTAA
*
75023850 TTAACTAA
1 TTATCTAA
75023858 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:75024354 original size:13 final size:13
Alignment explanation
Indices: 75024332--75024364 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
75024322 AAGGGTTTAT
75024332 TTAT-TAAACTAA
1 TTATCTAAACTAA
75024344 TTATCTAAACTAA
1 TTATCTAAACTAA
*
75024357 TTAACTAA
1 TTATCTAA
75024365 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:75024732 original size:507 final size:507
Alignment explanation
Indices: 75023779--75024793 Score: 1940
Period size: 507 Copynumber: 2.0 Consensus size: 507
75023769 AAAGTACTAG
75023779 TAATAACTATCTTTTTTTTATCTAGCCTAAGAATAAAAGGGTTTATTTATTAAACTAATTATCTA
1 TAATAACTATCTTTTTTTTATCTAGCCTAAGAATAAAAGGGTTTATTTATTAAACTAATTATCTA
75023844 AACTAATTAACTAATTTAATTAAAGTGAAGAGAGAATCTGGAAAAAGACTTGAAGAGAAGCAATT
66 AACTAATTAACTAATTTAATTAAAGTGAAGAGAGAATCTGGAAAAAGACTTGAAGAGAAGCAATT
75023909 AATAAAGACGACACCCAAGGAGGAATCCACCTAGATTTCACTTGTTATCTGACTCTGAACCAGAT
131 AATAAAGACGACACCCAAGGAGGAATCCACCTAGATTTCACTTGTTATCTGACTCTGAACCAGAT
*
75023974 GATTTATTCACTTGACTTGTTCCGTAGAGATCTCTAGGTTAAGTTATTATCCCTATTCAAGACTA
196 GATTTATTCACTTGACTTGTTCCGTAGAGATCCCTAGGTTAAGTTATTATCCCTATTCAAGACTA
*
75024039 ATAATATCTAATCCCTAGATTGAATAATCGAGACTTTTCTGTAATTAACACTCTAGGATTGCATT
261 ATAATATCTAATCCCTAGATTAAATAATCGAGACTTTTCTGTAATTAACACTCTAGGATTGCATT
*
75024104 AACTCGATCTATGGATCCCCTTATTAGGTTTCACCCTAATCCGGCAAAATCTCGTAACCCTATTT
326 AACTCGATCTATGGATCCCCTTATTAGGTTTCACCCTAATCCAGCAAAATCTCGTAACCCTATTT
*
75024169 CTAGGCATTCGATCAGCTCCGCTTAATTATGCCAAATCTACTCTTAGGTAGGGTCTATTCCTCCT
391 CTAGGCATTCGATCAACTCCGCTTAATTATGCCAAATCTACTCTTAGGTAGGGTCTATTCCTCCT
*
75024234 CTACATAAGCACATTAAATGATGAATTAATTATGATAAAATAATTGATTTGT
456 CTACATAAGCACATTAAATCATGAATTAATTATGATAAAATAATTGATTTGT
75024286 TAATAACTATCTTTTTTTTATCTAGCCTAAGAATAAAAGGGTTTATTTATTAAACTAATTATCTA
1 TAATAACTATCTTTTTTTTATCTAGCCTAAGAATAAAAGGGTTTATTTATTAAACTAATTATCTA
*
75024351 AACTAATTAACTAATTTAATTAAAGTGAAGAGAGAATTTGGAAAAAGACTTGAAGAGAAGCAATT
66 AACTAATTAACTAATTTAATTAAAGTGAAGAGAGAATCTGGAAAAAGACTTGAAGAGAAGCAATT
*
75024416 AATAAAGACGACACCCAAGGAGGAATCCACCTAGATTTCACTTGTTATCTGACTCTGAACCGGAT
131 AATAAAGACGACACCCAAGGAGGAATCCACCTAGATTTCACTTGTTATCTGACTCTGAACCAGAT
75024481 GATTTATTCACTTGACTTGTTCCGTAGAGATCCCTAGGTTAAGTTATTATCCCTATTCAAGACTA
196 GATTTATTCACTTGACTTGTTCCGTAGAGATCCCTAGGTTAAGTTATTATCCCTATTCAAGACTA
75024546 ATAATATCTAATCCCTAGATTAAATAATCGAGACTTTTCTGTAATTAACACTCTAGGATTGCATT
261 ATAATATCTAATCCCTAGATTAAATAATCGAGACTTTTCTGTAATTAACACTCTAGGATTGCATT
75024611 AACTCGATCTATGGATCCCCTTATTAGGTTTCACCCTAATCCAGCAAAATCTCGTAACCCTATTT
326 AACTCGATCTATGGATCCCCTTATTAGGTTTCACCCTAATCCAGCAAAATCTCGTAACCCTATTT
* *
75024676 TTAGGCGTTCGATCAACTCCGCTTAATTATGCCAAATCTACTCTTAGGTAGGGTCTATTCCTCCT
391 CTAGGCATTCGATCAACTCCGCTTAATTATGCCAAATCTACTCTTAGGTAGGGTCTATTCCTCCT
*
75024741 CTACGTAAGCACATTAAATCATGAATTAATTATGATAAAATAATTGATTTGT
456 CTACATAAGCACATTAAATCATGAATTAATTATGATAAAATAATTGATTTGT
75024793 T
1 T
75024794 CATATTATGT
Statistics
Matches: 498, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
507 498 1.00
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (507 bp):
TAATAACTATCTTTTTTTTATCTAGCCTAAGAATAAAAGGGTTTATTTATTAAACTAATTATCTA
AACTAATTAACTAATTTAATTAAAGTGAAGAGAGAATCTGGAAAAAGACTTGAAGAGAAGCAATT
AATAAAGACGACACCCAAGGAGGAATCCACCTAGATTTCACTTGTTATCTGACTCTGAACCAGAT
GATTTATTCACTTGACTTGTTCCGTAGAGATCCCTAGGTTAAGTTATTATCCCTATTCAAGACTA
ATAATATCTAATCCCTAGATTAAATAATCGAGACTTTTCTGTAATTAACACTCTAGGATTGCATT
AACTCGATCTATGGATCCCCTTATTAGGTTTCACCCTAATCCAGCAAAATCTCGTAACCCTATTT
CTAGGCATTCGATCAACTCCGCTTAATTATGCCAAATCTACTCTTAGGTAGGGTCTATTCCTCCT
CTACATAAGCACATTAAATCATGAATTAATTATGATAAAATAATTGATTTGT
Found at i:75029329 original size:17 final size:17
Alignment explanation
Indices: 75029287--75029339 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 17
75029277 ATTATATTTC
75029287 ATTATATTTTATT-TAT
1 ATTATATTTTATTCTAT
* *
75029303 -GTGT-TTTTATTAC-AT
1 ATTATATTTTATT-CTAT
75029318 ATTATATTTTATTCTAT
1 ATTATATTTTATTCTAT
75029335 ATTAT
1 ATTAT
75029340 TCCTTATAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 9
0.68 0.10 0.22
Matches are distributed among these distances:
14 7 0.25
15 4 0.14
16 3 0.11
17 14 0.50
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.64
Consensus pattern (17 bp):
ATTATATTTTATTCTAT
Found at i:75031903 original size:21 final size:21
Alignment explanation
Indices: 75031879--75031920 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
75031869 GGTTAATTTT
* * *
75031879 GTAATTTAATTAATAAACAAA
1 GTAAATTAATAAAGAAACAAA
75031900 GTAAATTAATAAAGAAACAAA
1 GTAAATTAATAAAGAAACAAA
75031921 AGTTTTCATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.62, C:0.05, G:0.07, T:0.26
Consensus pattern (21 bp):
GTAAATTAATAAAGAAACAAA
Found at i:75043754 original size:40 final size:40
Alignment explanation
Indices: 75043709--75043875 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
75043699 CGGAATATAA
75043709 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
75043749 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
75043789 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
75043829 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
75043868 CCGGATAT
1 CCGGATAT
75043876 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:75043859 original size:80 final size:79
Alignment explanation
Indices: 75043709--75043875 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
75043699 CGGAATATAA
* *
75043709 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
75043774 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
75043789 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
75043851 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
75043868 CCGGATAT
1 CCGGATAT
75043876 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:75044723 original size:17 final size:19
Alignment explanation
Indices: 75044700--75044745 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
75044690 AAGAAGCATG
75044700 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
75044718 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
75044736 AATCATGCTC
1 AATCATGCTC
75044746 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:75051752 original size:40 final size:40
Alignment explanation
Indices: 75051707--75051873 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
75051697 CGGAATATAA
75051707 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
75051747 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
75051787 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
75051827 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
75051866 CCGGATAT
1 CCGGATAT
75051874 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:75051857 original size:80 final size:79
Alignment explanation
Indices: 75051707--75051873 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
75051697 CGGAATATAA
* *
75051707 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
75051772 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
75051787 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
75051849 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
75051866 CCGGATAT
1 CCGGATAT
75051874 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:75052721 original size:17 final size:19
Alignment explanation
Indices: 75052698--75052743 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
75052688 AAGAAGCATG
75052698 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
75052716 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
75052734 AATCATGCTC
1 AATCATGCTC
75052744 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:75058562 original size:40 final size:39
Alignment explanation
Indices: 75058517--75058643 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
75058507 CGGAATACAA
75058517 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
75058557 CCGGATAGAA-CTC-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
* * *
75058594 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
75058634 CCGGATATAA
1 CCGGATATAA
75058644 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
37 31 0.42
38 2 0.03
39 4 0.05
40 37 0.50
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:75058576 original size:37 final size:38
Alignment explanation
Indices: 75058533--75058640 Score: 148
Period size: 37 Copynumber: 2.8 Consensus size: 38
75058523 ATAACCACGT
*
75058533 GCACGAATGCCTTCGGGTCTTAGCCCGGATAG-AACTC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGCAACTA
*
75058570 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGA--TAGCAACTA
*
75058610 GCAC-AATTGCCTTCGGGTCTTAACCCGGATA
1 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATA
75058641 TAATTTCCAG
Statistics
Matches: 64, Mismatches: 3, Indels: 7
0.86 0.04 0.09
Matches are distributed among these distances:
37 29 0.45
38 2 0.03
39 5 0.08
40 28 0.44
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATAGCAACTA
Found at i:75063393 original size:28 final size:29
Alignment explanation
Indices: 75063295--75063393 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
75063285 TCACAAATTG
* *
75063295 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
75063324 GCACTAAGTGTGCAAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
*
75063352 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
75063380 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75063394 GGCTTATTAC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 40 0.67
29 20 0.33
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:75067804 original size:40 final size:40
Alignment explanation
Indices: 75067755--75067962 Score: 195
Period size: 40 Copynumber: 5.2 Consensus size: 40
75067745 TCTTCGGAAT
* *
75067755 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* **** *
75067794 TTAACCCGGAT-TTGGTATCTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCA-CTAGCACAAATGCCTTCGGGTC
* * * *
75067834 TTAGCCCGGATATGACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* ** * * *
75067874 TTAGCCCAGATATAATTACTGGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
** * *
75067914 TTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
75067954 TTAGCCCGG
1 TTAGCCCGG
75067963 GTATCATTCA
Statistics
Matches: 139, Mismatches: 27, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
39 5 0.04
40 132 0.95
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:75076085 original size:29 final size:29
Alignment explanation
Indices: 75076043--75076174 Score: 180
Period size: 29 Copynumber: 4.7 Consensus size: 29
75076033 GAAAGCATGA
*
75076043 ATATGAATGTGATTTGGGCCTAATGGTCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
75076072 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* **
75076101 ATACGAATGTGATTTAAGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
75076130 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
75076158 ATATGCATGT-A-TTGGGC
1 ATATGAATGTGATTTGGGC
75076175 TTTGTAAGGG
Statistics
Matches: 92, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
27 7 0.08
28 21 0.23
29 64 0.70
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:75082630 original size:26 final size:26
Alignment explanation
Indices: 75082592--75082641 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
75082582 CAAGGGATAA
*
75082592 CGCCTTCTGTATCTAAACCTGTATAG
1 CGCCTTCTATATCTAAACCTGTATAG
* *
75082618 CGCCTTCTATATCTAGATCTGTAT
1 CGCCTTCTATATCTAAACCTGTAT
75082642 CGGGTAGCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38
Consensus pattern (26 bp):
CGCCTTCTATATCTAAACCTGTATAG
Found at i:75097908 original size:64 final size:64
Alignment explanation
Indices: 75097729--75097978 Score: 193
Period size: 68 Copynumber: 3.8 Consensus size: 64
75097719 TAGTTCGGCA
* * * *
75097729 CTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGTAGC
1 CTCTTGT-CTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACA-TATATCCCGTAGC
75097791 T
64 T
* * * * *
75097792 CTCTTGTCTACATGGTGTCCTTCACTTGGAACCACGCATGCGACCTAGCTACATATATCCCGTAT
1 CTCTTGTCTACATGGTG---TACACTTAGTACCACCCATGCGACCTAGCTACATATATCCCGTAG
75097857 CT
63 CT
* * * **
75097859 GTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTA
1 CTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACAT-AT-A--TCCCGTA
75097924 GCT
62 GCT
* * * * ** *
75097927 CTCTTGTAC-ACATGATGTGCACTCAGCACCATGCATGTGACCTAGCTACATA
1 CTCTTGT-CTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACATA
75097979 CCATCTGTAT
Statistics
Matches: 147, Mismatches: 29, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 15 0.10
64 28 0.19
65 2 0.01
66 24 0.16
67 28 0.19
68 48 0.33
69 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.30
Consensus pattern (64 bp):
CTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACATATATCCCGTAGCT
Found at i:75098678 original size:30 final size:30
Alignment explanation
Indices: 75098644--75098704 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
75098634 TCCTTAACTC
75098644 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
75098674 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
75098704 A
1 A
75098705 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:75108557 original size:25 final size:25
Alignment explanation
Indices: 75108523--75108576 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
75108513 TCCAAAAAGA
75108523 TTCTGACGTGAGTTTTCTTCCTCTT
1 TTCTGACGTGAGTTTTCTTCCTCTT
75108548 TTCTGACGTGAGTTTTCTTCCTCTT
1 TTCTGACGTGAGTTTTCTTCCTCTT
75108573 TTCT
1 TTCT
75108577 TCTCTTTCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.07, C:0.24, G:0.15, T:0.54
Consensus pattern (25 bp):
TTCTGACGTGAGTTTTCTTCCTCTT
Found at i:75111521 original size:20 final size:20
Alignment explanation
Indices: 75111493--75111532 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
75111483 TTGGAAGATG
*
75111493 AGAAAAAAAGATGAGAGAAA
1 AGAAAAAAAGAGGAGAGAAA
* *
75111513 AGAATAAAAGGGGAGAGAAA
1 AGAAAAAAAGAGGAGAGAAA
75111533 CAAAATGTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.30, T:0.05
Consensus pattern (20 bp):
AGAAAAAAAGAGGAGAGAAA
Found at i:75111622 original size:28 final size:27
Alignment explanation
Indices: 75111589--75111643 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
75111579 AGAGGATAGA
*
75111589 AAAAGGTAAG-GAGTGAAACAAGAGGGAG
1 AAAAGGAAAGAGAG-GAAACAAG-GGGAG
*
75111617 AAAAGGAAAGAGAGGGAACAAGGGGAG
1 AAAAGGAAAGAGAGGAAACAAGGGGAG
75111644 TGAAAGGGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 5 0.21
28 16 0.67
29 3 0.12
ACGTcount: A:0.51, C:0.04, G:0.42, T:0.04
Consensus pattern (27 bp):
AAAAGGAAAGAGAGGAAACAAGGGGAG
Found at i:75114464 original size:79 final size:82
Alignment explanation
Indices: 75114352--75114534 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 82
75114342 GACTCGCTCG
**
75114352 AATGCCTTCGGGACAAAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTC-GGATCTTAACCCGG
* * *
75114415 GTTTAGT-AACTTGCACA
65 ATATAGTCAACTAGCACA
* ***
75114432 AATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTCGGATCTTTGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCTTAACCCGGA
*
75114495 TATAGTCACCTAGCACA
66 TATAGTCAACTAGCACA
75114512 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
75114535 CATCATTCAA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 51 0.57
80 35 0.39
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (82 bp):
AATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCTTAACCCGGA
TATAGTCAACTAGCACA
Found at i:75114534 original size:40 final size:40
Alignment explanation
Indices: 75114343--75114534 Score: 176
Period size: 40 Copynumber: 4.8 Consensus size: 40
75114333 GGATATAACG
* * ** *
75114343 ACTCGCTCGAATGCCTTCGGGACAAAGCCCGGTTATAGTA
1 ACTCGCACGAAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
75114383 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
75114423 ACTTGCAC-AAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACGAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * *
75114462 ACTCGCACGAATGCCTTC-GGATCTTTGTCCGGATATAGTCA
1 ACTCGCACGAAAGCCTTCGGGA-CTTAGCCCGGATATAGT-A
* *
75114503 CCTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
1 ACTCGCACGAAAGCCTTCGGGACTTAGCCCGGA
75114535 CATCATTCAA
Statistics
Matches: 124, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
38 2 0.02
39 30 0.24
40 82 0.66
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
ACTCGCACGAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:75116955 original size:13 final size:13
Alignment explanation
Indices: 75116937--75116989 Score: 52
Period size: 13 Copynumber: 4.1 Consensus size: 13
75116927 CTTAAACTAA
75116937 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
75116950 ACTTTTCTATAGC
1 ACTTTTCAAAAGC
* * *
75116963 ATTTTTAAAAAAC
1 ACTTTTCAAAAGC
*
75116976 ACTTTTTAAAAGC
1 ACTTTTCAAAAGC
75116989 A
1 A
75116990 ATGCTAAATT
Statistics
Matches: 30, Mismatches: 10, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.38
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:75117397 original size:33 final size:33
Alignment explanation
Indices: 75117317--75117399 Score: 96
Period size: 33 Copynumber: 2.5 Consensus size: 33
75117307 TTTCACTAAG
* *
75117317 TAAAGACAAAA-TTAAACTTGGTTACTAAAGGC
1 TAAAGACAAAAGTTAAACTTGATTACTAAAGAC
* * * *
75117349 TATAGACAAAGGTTAAACTTGATTCCTAAATAC
1 TAAAGACAAAAGTTAAACTTGATTACTAAAGAC
*
75117382 TAAAGATAAAAGTTAAAC
1 TAAAGACAAAAGTTAAAC
75117400 ATAGTACAAG
Statistics
Matches: 41, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
32 9 0.22
33 32 0.78
ACGTcount: A:0.48, C:0.12, G:0.13, T:0.27
Consensus pattern (33 bp):
TAAAGACAAAAGTTAAACTTGATTACTAAAGAC
Found at i:75117643 original size:11 final size:11
Alignment explanation
Indices: 75117627--75117651 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
75117617 ATTTTCTCTC
75117627 TAATAAAATGG
1 TAATAAAATGG
75117638 TAATAAAATGG
1 TAATAAAATGG
75117649 TAA
1 TAA
75117652 GATGCCTTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.16, T:0.28
Consensus pattern (11 bp):
TAATAAAATGG
Found at i:75118526 original size:29 final size:29
Alignment explanation
Indices: 75118490--75118547 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
75118480 AAAAACCTTG
*
75118490 TACGATAAAAACCTAATAAAGGAAAAAGA
1 TACGATAAAAACATAATAAAGGAAAAAGA
75118519 TACGATAAAAACATAATAAAGGAAAAAGA
1 TACGATAAAAACATAATAAAGGAAAAAGA
75118548 GTATACAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.64, C:0.09, G:0.14, T:0.14
Consensus pattern (29 bp):
TACGATAAAAACATAATAAAGGAAAAAGA
Found at i:75120457 original size:27 final size:26
Alignment explanation
Indices: 75120420--75120529 Score: 112
Period size: 27 Copynumber: 4.1 Consensus size: 26
75120410 CATGACTGCA
*
75120420 AGAACAGATAATGTGACAGAGTCACC
1 AGAACAGATAATGTGGCAGAGTCACC
* *
75120446 AGAAACAGATAATCGTGGTAGAATCACC
1 AG-AACAGATAAT-GTGGCAGAGTCACC
* *
75120474 AGAACAGAAATATGTGGCAGAGCCACC
1 AGAACAGATA-ATGTGGCAGAGTCACC
* * *
75120501 AGATCAGATAATTGTGGCATAGCCACC
1 AGAACAGATAA-TGTGGCAGAGTCACC
75120528 AG
1 AG
75120530 GACGCTTCCT
Statistics
Matches: 70, Mismatches: 10, Indels: 7
0.80 0.11 0.08
Matches are distributed among these distances:
26 3 0.04
27 52 0.74
28 15 0.21
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (26 bp):
AGAACAGATAATGTGGCAGAGTCACC
Found at i:75121971 original size:24 final size:24
Alignment explanation
Indices: 75121944--75122014 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
75121934 CTAGATTTCT
**
75121944 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
75121968 TCCCTCATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
75121992 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
75122015 CTCCTGACAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.25, C:0.39, G:0.01, T:0.34
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:75124649 original size:28 final size:28
Alignment explanation
Indices: 75124609--75124665 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
75124599 AACCAGAATT
75124609 CACACTTGCTGAACTTTGCATAAAGTTC
1 CACACTTGCTGAACTTTGCATAAAGTTC
75124637 CACACTTGCTGAACTTTGCATAAAGTTC
1 CACACTTGCTGAACTTTGCATAAAGTTC
75124665 C
1 C
75124666 TTCTCCCTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (28 bp):
CACACTTGCTGAACTTTGCATAAAGTTC
Found at i:75128316 original size:27 final size:26
Alignment explanation
Indices: 75128281--75128392 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
75128271 AGCATGGCTG
** *
75128281 CCAGAACAGATAATGTGATAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
75128307 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
75128335 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
75128362 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
75128389 CCAG
1 CCAG
75128393 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.71
28 15 0.21
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:75128372 original size:54 final size:54
Alignment explanation
Indices: 75128281--75128392 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
75128271 AGCATGGCTG
* * *
75128281 CCAGAACAGATAATGTGATAGAGTCACCAGATACAGATAATCGTGGCAGAACCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAACCA
* * * *
75128335 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAACCA
75128389 CCAG
1 CCAG
75128393 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAACCA
Found at i:75129827 original size:24 final size:24
Alignment explanation
Indices: 75129811--75129870 Score: 111
Period size: 24 Copynumber: 2.5 Consensus size: 24
75129801 CCCTTATTTG
*
75129811 CTCCTAAATCCTATCCCTCATCAA
1 CTCCTAAATCCTATCCCTTATCAA
75129835 CTCCTAAATCCTATCCCTTATCAA
1 CTCCTAAATCCTATCCCTTATCAA
75129859 CTCCTAAATCCT
1 CTCCTAAATCCT
75129871 CTCCTGACAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.28, C:0.40, G:0.00, T:0.32
Consensus pattern (24 bp):
CTCCTAAATCCTATCCCTTATCAA
Found at i:75138816 original size:32 final size:32
Alignment explanation
Indices: 75138773--75138849 Score: 86
Period size: 32 Copynumber: 2.4 Consensus size: 32
75138763 TCTAAATAAG
* *
75138773 GGGCTAAGGCCCAGT-TTAATGTAATCTGAAT
1 GGGCTTAGGCCCAGTATCAATGTAATCTGAAT
* *
75138804 AGGGCTCT-GGCCCAGTATCACTGTTATCTGAAT
1 -GGGCT-TAGGCCCAGTATCAATGTAATCTGAAT
75138837 GGGCTTAGGCCCA
1 GGGCTTAGGCCCA
75138850 ATGGGCTTGA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
31 1 0.03
32 24 0.63
33 13 0.34
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (32 bp):
GGGCTTAGGCCCAGTATCAATGTAATCTGAAT
Found at i:75146109 original size:26 final size:26
Alignment explanation
Indices: 75146080--75146132 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
75146070 TTTACAGTTT
75146080 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
75146106 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
75146132 T
1 T
75146133 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:75149089 original size:29 final size:28
Alignment explanation
Indices: 75148980--75149111 Score: 104
Period size: 29 Copynumber: 4.6 Consensus size: 28
75148970 GTGACAAGAT
* * *
75148980 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGATTG-AATATA
* * *
75149009 CGGCACTAAGTGTGCGAGTTTAGACTATA
1 TGGCACTAAGTGTGCGAGATT-GAATATA
* * *
75149038 TGGCACTATGTGTGCGGGCTTGAATCATA
1 TGGCACTAAGTGTGCGAGATTGAAT-ATA
* *
75149067 TGGCACTAAGTGTGCGTGATTGAGTAT-
1 TGGCACTAAGTGTGCGAGATTGAATATA
* *
75149094 TAAGCACTATGTGTGCGA
1 T-GGCACTAAGTGTGCGA
75149112 ACTCTACACA
Statistics
Matches: 83, Mismatches: 17, Indels: 7
0.78 0.16 0.07
Matches are distributed among these distances:
27 1 0.01
28 18 0.22
29 63 0.76
30 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.30
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGATTGAATATA
Found at i:75155639 original size:12 final size:14
Alignment explanation
Indices: 75155624--75155655 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
75155614 GTGAGAACAC
75155624 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
75155636 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
75155650 ATGTGT
1 ATGTGT
75155656 TTAAGACGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:75155821 original size:50 final size:49
Alignment explanation
Indices: 75155667--75155852 Score: 171
Period size: 50 Copynumber: 3.7 Consensus size: 49
75155657 TAAGACGGTT
* *
75155667 TTAGGTCATGTGTGTAGTACTAAGTGCAGGCTACT-ATGCGTACCTGATAG
1 TTAGGTCAAGTGTGTAGTACTAAGTGCAGGCTACTCAT--GTACCAGATAG
* * * * * *
75155717 CTTCA-ATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGG
1 -TT-AGGTCAAGTGTGTAGTACTAAGTGCAGGCTACT-CATGTACCAGATAG
* * *
75155768 TTAGGTCAAGTGTGTAGTACTAAGTGCAGGCCACTCCATGTACCAAATTG
1 TTAGGTCAAGTGTGTAGTACTAAGTGCAGGCTACT-CATGTACCAGATAG
* *
75155818 TTAGGTCGCA-TGTGTAGTACTAAATGCAGGCTACT
1 TTAGGTC-AAGTGTGTAGTACTAAGTGCAGGCTACT
75155853 ATGCATACCA
Statistics
Matches: 111, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
49 1 0.01
50 69 0.62
51 39 0.35
52 1 0.01
53 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (49 bp):
TTAGGTCAAGTGTGTAGTACTAAGTGCAGGCTACTCATGTACCAGATAG
Found at i:75159408 original size:2 final size:2
Alignment explanation
Indices: 75159395--75159425 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
75159385 ACATGCATGC
*
75159395 AT AT AT AG AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
75159426 AGCTTACAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (2 bp):
AT
Found at i:75166241 original size:43 final size:43
Alignment explanation
Indices: 75166168--75166314 Score: 147
Period size: 43 Copynumber: 3.4 Consensus size: 43
75166158 TATCCTAGAT
* * * *
75166168 ATGGTCTTACATGTTATCAC-ATATCGATGCCACTTTCCCAAAC
1 ATGGTCTTACATGTAATCTCAATA-CAATGCCACTGTCCCAAAC
* * * * * *
75166211 AAGGTCTTACATGAAATC-GATTAACAATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCTCAAT-ACAATGCCACTGTCCCAAAC
*
75166254 ATGGTCTTACACGTAATCTCAATACAATGCC-CATGTCCCAAAC
1 ATGGTCTTACATGTAATCTCAATACAATGCCAC-TGTCCCAAAC
75166297 ATGGTCTTACATGTAATC
1 ATGGTCTTACATGTAATC
75166315 ATATCTCGAT
Statistics
Matches: 83, Mismatches: 17, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
43 80 0.96
44 3 0.04
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCTCAATACAATGCCACTGTCCCAAAC
Found at i:75172053 original size:50 final size:50
Alignment explanation
Indices: 75171972--75172240 Score: 200
Period size: 48 Copynumber: 5.5 Consensus size: 50
75171962 CGTGAGGTAG
* * *
75171972 TGTAAGACCATGT-TCGGGACATGGTAGCGGCACCGTTG-TATGAGAGCCAA
1 TGTAAGACCATGTCT-GGGACATGGCATCGGCA-CGTTGATATGTGAGCCAA
* * *
75172022 TGTAAGACCATGTCTGGGACATGGCGTCGGCA--TTGTTATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACGTTGATATGTGAGCCAA
* * * *
75172070 TGTAAGACCATGTTTAGAACATGGCATCGG--CGTTGATATGTGTG-CAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACGTTGATATGTGAGCCAA
* * * * *
75172117 GTGTAAGACCATGTCTGGGACATGGCATCGGCA--TTGAGACGAGAGCTAG
1 -TGTAAGACCATGTCTGGGACATGGCATCGGCACGTTGATATGTGAGCCAA
* * * * * * * * *
75172166 TGTAAGACCATGTCTAGGAAACGACATCAG-TC-TCGACATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACGTTGATATGTGAGCCAA
* *
75172214 TGTAAGACCATGTTTGAGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
75172241 TCACAATTTA
Statistics
Matches: 172, Mismatches: 38, Indels: 20
0.75 0.17 0.09
Matches are distributed among these distances:
47 5 0.03
48 138 0.80
49 1 0.01
50 27 0.16
51 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (50 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCACGTTGATATGTGAGCCAA
Found at i:75172092 original size:48 final size:48
Alignment explanation
Indices: 75172010--75172240 Score: 216
Period size: 48 Copynumber: 4.8 Consensus size: 48
75172000 GGCACCGTTG
* * * * * *
75172010 TATGAGAGCCAATGTAAGACCATGTCTGGGACATGGCGTCGGCATTGT
1 TATGTGAGCCAGTGTAAGACCATGTCTAGAACATGGCATCGGCATTGA
* *
75172058 TATGTGAGCCAGTGTAAGACCATGTTTAGAACATGGCATCGGCGTTGA
1 TATGTGAGCCAGTGTAAGACCATGTCTAGAACATGGCATCGGCATTGA
* * * *
75172106 TATGTGTGCAAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
1 TATGTGAGCCAGTGTAAGACCATGTCTAGAACATGGCATCGGCATTGA
* * * * * * * *
75172154 GACGAGAGCTAGTGTAAGACCATGTCTAGGAA-ACGACATCAGTC-TCGA
1 TATGTGAGCCAGTGTAAGACCATGTCTA-GAACATGGCATC-GGCATTGA
* *
75172202 CATGTGAGCCAGTGTAAGACCATGT-TTGAGACATGGCAT
1 TATGTGAGCCAGTGTAAGACCATGTCTAGA-ACATGGCAT
75172241 TCACAATTTA
Statistics
Matches: 147, Mismatches: 32, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
46 2 0.01
47 2 0.01
48 139 0.95
49 4 0.03
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
TATGTGAGCCAGTGTAAGACCATGTCTAGAACATGGCATCGGCATTGA
Found at i:75172148 original size:96 final size:96
Alignment explanation
Indices: 75172022--75172240 Score: 262
Period size: 96 Copynumber: 2.3 Consensus size: 96
75172012 TGAGAGCCAA
* ** * * *
75172022 TGTAAGACCATGTCTGGGACATGGCGTCGGCATTGTTATGTGAGCCAGTGTAAGACCATGTTTA-
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCCAGTGTAAGACCATGTCTAG
* * * * *
75172086 GAACATGGCATC-GGCGTTGATATGTGTGCAAG
66 GAA-ACGACATCAGGC-TCGACATGTGAGCAAG
*
75172118 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACCATGTCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCCAGTGTAAGACCATGTCTAG
* *
75172183 GAAACGACATCAGTCTCGACATGTGAGCCAG
66 GAAACGACATCAGGCTCGACATGTGAGCAAG
* *
75172214 TGTAAGACCATGTTTGAGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
75172241 TCACAATTTA
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
96 100 0.95
97 5 0.05
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (96 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCCAGTGTAAGACCATGTCTAG
GAAACGACATCAGGCTCGACATGTGAGCAAG
Found at i:75175436 original size:29 final size:29
Alignment explanation
Indices: 75175403--75175467 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
75175393 GTGACGAGAT
75175403 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
75175432 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
75175461 CGGCACT
1 TGGCACT
75175468 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:75183301 original size:29 final size:29
Alignment explanation
Indices: 75183200--75183293 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
75183190 GTGACGAGAT
75183200 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
75183229 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
75183258 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
75183287 CGGCACT
1 TGGCACT
75183294 GGGTGTGCGA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:75183318 original size:58 final size:58
Alignment explanation
Indices: 75183196--75183330 Score: 175
Period size: 58 Copynumber: 2.3 Consensus size: 58
75183186 TACGGTGACG
* *
75183196 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
* **
75183253 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
75183311 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
75183331 GGGCTTAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 3 0.04
58 63 0.94
59 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.26
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:75190369 original size:40 final size:40
Alignment explanation
Indices: 75190324--75190490 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
75190314 CGGAATATAA
75190324 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
75190364 CCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
75190403 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
75190443 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
75190483 CCGGATAT
1 CCGGATAT
75190491 CATTCAATTT
Statistics
Matches: 101, Mismatches: 23, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
39 31 0.31
40 69 0.68
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:75190473 original size:79 final size:80
Alignment explanation
Indices: 75190340--75190488 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 80
75190330 ATAATCACGT
*
75190340 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGACTTAGCC
75190404 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * * *
75190419 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGACTTAG
75190482 CCCGGAT
64 CCCGGAT
75190489 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.05
79 46 0.77
80 11 0.18
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGACTTAGCC
CGGATGTAGCCACTA
Found at i:75195836 original size:40 final size:40
Alignment explanation
Indices: 75195791--75195957 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
75195781 CGGAATATAA
75195791 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
75195831 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
75195871 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
75195911 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
75195950 CCGGATAT
1 CCGGATAT
75195958 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:75196800 original size:17 final size:19
Alignment explanation
Indices: 75196777--75196822 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
75196767 AAGAAGCATG
75196777 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
75196795 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
75196813 AATCATGCTC
1 AATCATGCTC
75196823 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:75203828 original size:39 final size:40
Alignment explanation
Indices: 75203784--75203949 Score: 174
Period size: 40 Copynumber: 4.2 Consensus size: 40
75203774 CGGAATATAA
*
75203784 CCGGATATAATCAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
75203823 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
75203863 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
75203903 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
75203942 CCGGATAT
1 CCGGATAT
75203950 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
39 25 0.24
40 79 0.76
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:75204792 original size:17 final size:19
Alignment explanation
Indices: 75204769--75204814 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
75204759 AAGAAGCATG
75204769 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
75204787 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
75204805 AATCATGCTC
1 AATCATGCTC
75204815 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:75206882 original size:60 final size:60
Alignment explanation
Indices: 75206804--75206940 Score: 163
Period size: 60 Copynumber: 2.3 Consensus size: 60
75206794 TAGTGTTAAC
* * *
75206804 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGTATC-AGAGAATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCACAGCCCTATTACAAG--TCGAGA-AATAT
* *
75206865 TGGGCCTAGCCCATATCAGTATCAATCTGGGCCGCAGCCCTATTACAAGTCGAGAAATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCACAGCCCTATTACAAGTCGAGAAATAT
*
75206925 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
75206941 TAACATAGTT
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
60 52 0.78
61 13 0.19
62 2 0.03
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCACAGCCCTATTACAAGTCGAGAAATAT
Found at i:75209596 original size:33 final size:33
Alignment explanation
Indices: 75209534--75209597 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
75209524 ATTAACAACA
* * *
75209534 ATAATTTTATAAATATATTTGTATCTAATAATT
1 ATAATTTTATAAAAATATTAGTATATAATAATT
75209567 ATAATTTTCATAAAAATATTAGTA-ATAATAA
1 ATAATTTT-ATAAAAATATTAGTATATAATAA
75209598 CAGAAATATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 14 0.52
34 13 0.48
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (33 bp):
ATAATTTTATAAAAATATTAGTATATAATAATT
Found at i:75211805 original size:60 final size:60
Alignment explanation
Indices: 75211729--75211865 Score: 170
Period size: 60 Copynumber: 2.3 Consensus size: 60
75211719 TAATGTTAAC
* * *
75211729 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGTAGCAGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCACAGCCCTATTACAAGTAG-AGA-TATAT
* * *
75211790 TGGGCCTAGCCCATATCAGTATCAATCTGGGCCGCAGCCCTATTACAAGTCGAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCACAGCCCTATTACAAGTAGAGATATAT
*
75211850 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
75211866 TAACATAGTT
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
60 50 0.75
61 13 0.19
62 4 0.06
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCACAGCCCTATTACAAGTAGAGATATAT
Found at i:75220904 original size:21 final size:21
Alignment explanation
Indices: 75220879--75220936 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
75220869 GGGAAGAGGT
*
75220879 ACACGGCCATGTG-GCTAAGG
1 ACACGGCCATGTGAGCCAAGG
75220899 CACAC-GCCTATGTGAGCCAAGG
1 -ACACGGCC-ATGTGAGCCAAGG
*
75220921 ACATGGCCATGTGAGC
1 ACACGGCCATGTGAGC
75220937 AGGCTGTGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 3 0.09
21 20 0.62
22 9 0.28
ACGTcount: A:0.26, C:0.28, G:0.31, T:0.16
Consensus pattern (21 bp):
ACACGGCCATGTGAGCCAAGG
Found at i:75229018 original size:46 final size:44
Alignment explanation
Indices: 75228916--75229027 Score: 136
Period size: 46 Copynumber: 2.5 Consensus size: 44
75228906 ATGCCGATGC
* * *
75228916 CATGTCCCAGAGATGGTCTTACACTGACACATCTTGTAGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTGACACATCTCGTAGCTAATG
* *
75228961 CATGTCTCAGACATGTCTTACACTGACTTACTTCTCG-AGGCTAATG
1 CATGTCCCAGACATGTCTTACACTGAC--ACATCTCGTA-GCTAATG
75229007 CATGTCCCAGACATGTCTTAC
1 CATGTCCCAGACATGTCTTAC
75229028 TCTAGCACTC
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
44 13 0.22
45 13 0.22
46 32 0.55
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGACACATCTCGTAGCTAATG
Found at i:75237816 original size:22 final size:22
Alignment explanation
Indices: 75237786--75237827 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
75237776 TGCATTATGC
*
75237786 TCCCTATGTTGCGACATCAAACT
1 TCCCTATGTTGCCACA-CAAACT
75237809 TCCC-ATGTTGCCACACAAA
1 TCCCTATGTTGCCACACAAA
75237828 GACCAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 10 0.56
23 4 0.22
ACGTcount: A:0.29, C:0.33, G:0.12, T:0.26
Consensus pattern (22 bp):
TCCCTATGTTGCCACACAAACT
Found at i:75241820 original size:18 final size:18
Alignment explanation
Indices: 75241793--75241827 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75241783 CAAGAATAGT
* *
75241793 AAGCATAAAACTAGTTTC
1 AAGCACAAAAATAGTTTC
75241811 AAGCACAAAAATAGTTT
1 AAGCACAAAAATAGTTT
75241828 GGAACATTGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.14, G:0.11, T:0.26
Consensus pattern (18 bp):
AAGCACAAAAATAGTTTC
Found at i:75250002 original size:40 final size:39
Alignment explanation
Indices: 75249911--75250061 Score: 128
Period size: 40 Copynumber: 3.8 Consensus size: 39
75249901 ATAACCATGT
* *
75249911 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
75249951 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * ** *
75249991 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* *
75250031 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAA-TGCCTTCGGG-TCTTAGCCCGGATA
75250062 TCATTCAATT
Statistics
Matches: 92, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 85 0.92
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:75250045 original size:80 final size:80
Alignment explanation
Indices: 75249911--75250060 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
75249901 ATAACCATGT
*
75249911 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
75249975 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
75249991 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
75250054 CCCGGAT
64 CCCGGAT
75250061 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:75269323 original size:28 final size:28
Alignment explanation
Indices: 75269258--75269358 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
75269248 ATAGTGAATC
*
75269258 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
75269287 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
75269315 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
75269345 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75269359 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:75277285 original size:28 final size:28
Alignment explanation
Indices: 75277220--75277320 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
75277210 ATAGTGAATC
*
75277220 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
75277249 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
75277277 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
75277307 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75277321 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:75280583 original size:6 final size:6
Alignment explanation
Indices: 75280545--75280638 Score: 59
Period size: 6 Copynumber: 15.3 Consensus size: 6
75280535 AAGAAACATT
* * * *
75280545 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAAA ATCAGA ATCAGA ATTAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
75280592 GTGGCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATTAGA ATCAGA AT
1 AT--CAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
75280639 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 14, Indels: 16
0.69 0.15 0.17
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:75280605 original size:25 final size:25
Alignment explanation
Indices: 75280574--75280638 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
75280564 TGAGAATCAA
* **
75280574 AATCAGAATCAGAATTAGGTGGCAG
1 AATCAGAATCAGAATCAGGTAACAG
*
75280599 AATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
*
75280624 AATTAGAATCAGAAT
1 AATCAGAATCAGAAT
75280639 GTGAATGCAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.45, C:0.12, G:0.22, T:0.22
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAG
Found at i:75280911 original size:22 final size:22
Alignment explanation
Indices: 75280883--75280929 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
75280873 AACGGCACAT
*
75280883 AGCCATAAT-CAGGTTGGCGTAA
1 AGCCAT-ATGCAGGTTGGCGCAA
*
75280905 AGCCATATGTAGGTTGGCGCAA
1 AGCCATATGCAGGTTGGCGCAA
75280927 AGC
1 AGC
75280930 TATTGGCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 2 0.09
22 20 0.91
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.21
Consensus pattern (22 bp):
AGCCATATGCAGGTTGGCGCAA
Found at i:75283407 original size:27 final size:27
Alignment explanation
Indices: 75283013--75283405 Score: 461
Period size: 27 Copynumber: 14.6 Consensus size: 27
75283003 AAAGTACTCC
75283013 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
75283040 C-AGTTTATAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* ** *
75283067 CAATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
75283094 CGATTTATAGATTTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
75283121 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
75283148 CGATTTACAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
75283175 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
75283202 CGATTTATAGAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
75283228 CTAATTTACATAATTACCATTTTACCC-
1 C-GATTTACAGAATTACCGTTTTACCCT
* *
75283255 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
75283282 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
75283309 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
75283336 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
75283363 TGATTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
75283390 TGATTTACAAAATTAC
1 CGATTTACAGAATTAC
75283406 TAAAATACCC
Statistics
Matches: 319, Mismatches: 41, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
26 25 0.08
27 292 0.92
28 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:75283414 original size:27 final size:27
Alignment explanation
Indices: 75283357--75283418 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
75283347 ATTACTGTTT
* ***
75283357 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTTGATTTACAAAATTACTAAAA
75283384 TACCCTTGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
75283411 TACCCTTG
1 TACCCTTG
75283419 GTTTGTGAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.34, C:0.21, G:0.06, T:0.39
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTAAAA
Found at i:75284673 original size:25 final size:25
Alignment explanation
Indices: 75284644--75284691 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
75284634 TTATAATATG
* *
75284644 AAAATGACCATTTTGCCCCTAGGTC
1 AAAATGACCATTATACCCCTAGGTC
75284669 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
75284692 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTC
Found at i:75284742 original size:9 final size:9
Alignment explanation
Indices: 75284730--75284786 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
75284720 TTTGATAAAC
75284730 ATGATATGT
1 ATGATATGT
*
75284739 ATGATATGCAC
1 ATGATATG--T
*
75284750 ATGACATGT
1 ATGATATGT
*
75284759 ATGATATGCAC
1 ATGATATG--T
75284770 ATGATATGT
1 ATGATATGT
75284779 ATGATATG
1 ATGATATG
75284787 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:75284753 original size:20 final size:20
Alignment explanation
Indices: 75284728--75284798 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
75284718 ATTTTGATAA
75284728 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
75284748 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
75284768 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
75284788 ACATGAGATGT
1 ACATGATATGT
75284799 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:75284775 original size:11 final size:11
Alignment explanation
Indices: 75284739--75284793 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
75284729 CATGATATGT
75284739 ATGATATGCAC
1 ATGATATGCAC
* *
75284750 ATGACATG--T
1 ATGATATGCAC
75284759 ATGATATGCAC
1 ATGATATGCAC
*
75284770 ATGATATG--T
1 ATGATATGCAC
75284779 ATGATATGCAC
1 ATGATATGCAC
75284790 ATGA
1 ATGA
75284794 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:75284875 original size:23 final size:23
Alignment explanation
Indices: 75284845--75285011 Score: 280
Period size: 23 Copynumber: 7.1 Consensus size: 23
75284835 AGGAAGTGCA
75284845 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
75284868 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
75284891 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
75284915 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
75284939 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
75284962 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
75284985 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
75285009 AAA
1 AAA
75285012 AGAGGCTAGG
Statistics
Matches: 139, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
23 71 0.51
24 68 0.49
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:75284923 original size:24 final size:23
Alignment explanation
Indices: 75284844--75285033 Score: 274
Period size: 24 Copynumber: 8.0 Consensus size: 23
75284834 GAGGAAGTGC
75284844 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
75284867 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
75284890 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
75284913 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
75284937 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
75284961 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
75284985 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
75285009 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
75285033 A
1 A
75285034 TGATAAAGCA
Statistics
Matches: 156, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
23 66 0.42
24 80 0.51
25 10 0.06
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:75284962 original size:71 final size:70
Alignment explanation
Indices: 75284843--75285032 Score: 301
Period size: 71 Copynumber: 2.7 Consensus size: 70
75284833 GGAGGAAGTG
*
75284843 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCA
1 CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCA
75284908 GTTAT
66 GTTAT
75284913 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCC
1 CAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCC
75284978 AGTTAT
65 AGTTAT
* * *
75284984 TAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
75285033 ATGATAAAGC
Statistics
Matches: 112, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
70 24 0.21
71 76 0.68
72 12 0.11
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (70 bp):
CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCA
GTTAT
Found at i:75285262 original size:30 final size:31
Alignment explanation
Indices: 75285226--75285288 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
75285216 CGTTTACAGT
*
75285226 AAAGGCTTC-GCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
75285256 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
75285287 AA
1 AA
75285289 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 9 0.31
31 20 0.69
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:75289060 original size:40 final size:40
Alignment explanation
Indices: 75289005--75289214 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
75288995 AACATTGGAA
75289005 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75289045 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75289085 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
75289125 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
75289164 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
75289205 CTATATCCGG
1 ATATATCCGG
75289215 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:75290622 original size:38 final size:38
Alignment explanation
Indices: 75290566--75290705 Score: 226
Period size: 38 Copynumber: 3.7 Consensus size: 38
75290556 GGGTGTTACA
* *
75290566 AGCACGAAGCCTGCGGGATTTAACTCGAATATAAGACC
1 AGCACGAAGCCTGCGGGATTTAACCCGGATATAAGACC
* *
75290604 ATCACGAAGCCTGTGGGATTTAACCCGGATATAAGACC
1 AGCACGAAGCCTGCGGGATTTAACCCGGATATAAGACC
75290642 AGCACGAAGCCTGCGGGATTTAACCCGGATATAAGACC
1 AGCACGAAGCCTGCGGGATTTAACCCGGATATAAGACC
*
75290680 AGCACAAAGCCTGCGGGATTATAACC
1 AGCACGAAGCCTGCGGGATT-TAACC
75290706 TGAAATCTTA
Statistics
Matches: 94, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
38 89 0.95
39 5 0.05
ACGTcount: A:0.33, C:0.25, G:0.24, T:0.18
Consensus pattern (38 bp):
AGCACGAAGCCTGCGGGATTTAACCCGGATATAAGACC
Found at i:75291325 original size:63 final size:63
Alignment explanation
Indices: 75291249--75291373 Score: 223
Period size: 63 Copynumber: 2.0 Consensus size: 63
75291239 AATAACTGAC
* * *
75291249 TTCGCACACTTAGTGCTTAGAAATTAATTGACACACATAGTGCTTAAATCCAACTCGTACACA
1 TTCGCACACTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTCGCACACA
75291312 TTCGCACACTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTCGCACAC
1 TTCGCACACTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTCGCACAC
75291374 TTAATGGTCA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.27
Consensus pattern (63 bp):
TTCGCACACTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTCGCACACA
Found at i:75291341 original size:27 final size:28
Alignment explanation
Indices: 75291311--75291407 Score: 85
Period size: 27 Copynumber: 3.6 Consensus size: 28
75291301 ACTCGTACAC
*
75291311 ATTCGCACACTTAGTGCTCAGAAAT-TA
1 ATTCGCACACTTAGTGCTCAGAAATCAA
* * * *
75291338 ATTCACACACATAGTGCT--TAAATCCA
1 ATTCGCACACTTAGTGCTCAGAAATCAA
* * * *
75291364 ACTCGCACACTTAATGGTCAG-TATCAA
1 ATTCGCACACTTAGTGCTCAGAAATCAA
75291391 ATTCGCACACTTAGTGC
1 ATTCGCACACTTAGTGC
75291408 ATCCCTCAAA
Statistics
Matches: 52, Mismatches: 15, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
25 4 0.08
26 14 0.27
27 34 0.65
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (28 bp):
ATTCGCACACTTAGTGCTCAGAAATCAA
Found at i:75293867 original size:27 final size:27
Alignment explanation
Indices: 75293706--75293873 Score: 212
Period size: 27 Copynumber: 6.2 Consensus size: 27
75293696 GGGCATAATG
* * * *
75293706 GTAATTTTAACCC-ACAAGGGTATCTCG
1 GTAATTCT-ACCCTACAGGGGTATTTCA
* *
75293733 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
75293760 GTATTTCTATCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
75293787 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75293814 GTAATTCTACCCTACAGAGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75293841 GTAATTCTACCCTGCAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75293868 ATAATT
1 GTAATT
75293874 TTGTAAATCG
Statistics
Matches: 124, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
26 4 0.03
27 120 0.97
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:75296806 original size:49 final size:49
Alignment explanation
Indices: 75296676--75296808 Score: 162
Period size: 49 Copynumber: 2.7 Consensus size: 49
75296666 GTACATTAAA
* * * *
75296676 GTCGATGCCATGTCCTAGATAGGTCTTACACTAACTTTCATATATCGAG
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAG
* * *
75296725 G-CTGATGCCATGTCCCAGACAAGTCTTACACTGGCTCTCATCTATCG-G
1 GTC-GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAG
*
75296773 TGTCGATGCAATGTCCCAGACAGGTCTTACACTGAC
1 -GTCGATGCCATGTCCCAGACAGGTCTTACACTGAC
75296809 ACATAACAAG
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
48 2 0.03
49 68 0.96
50 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAG
Found at i:75300116 original size:12 final size:12
Alignment explanation
Indices: 75300099--75300134 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
75300089 TCATTCATTT
75300099 AAACTTGACCTC
1 AAACTTGACCTC
75300111 AAACTTGACCTC
1 AAACTTGACCTC
75300123 AAACTTGACCTC
1 AAACTTGACCTC
75300135 TTTTTGTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.08, T:0.25
Consensus pattern (12 bp):
AAACTTGACCTC
Found at i:75304050 original size:15 final size:15
Alignment explanation
Indices: 75304030--75304061 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
75304020 ATTTATCGAT
75304030 TTTAACTAGAACATC
1 TTTAACTAGAACATC
75304045 TTTAACTAGAACATC
1 TTTAACTAGAACATC
75304060 TT
1 TT
75304062 CAATAATACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.38
Consensus pattern (15 bp):
TTTAACTAGAACATC
Found at i:75313157 original size:39 final size:39
Alignment explanation
Indices: 75313103--75313295 Score: 320
Period size: 39 Copynumber: 5.0 Consensus size: 39
75313093 GCAAGACGCG
75313103 GGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCT
1 GGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCT
*
75313142 GGAAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTGCT
1 GGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCT
*
75313181 GGAAATATATCCGGGCTAAAGT-CCGCAGGCTTCGTGCT
1 GGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCT
*
75313219 GGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCT
1 GGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCT
* *
75313258 GGAAATGTAT-CGGGTTAAAGT-CCGCAGGCTTTGTGCT
1 GGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCT
75313295 G
1 G
75313296 ATAATATAAT
Statistics
Matches: 145, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
37 16 0.11
38 44 0.30
39 85 0.59
ACGTcount: A:0.22, C:0.24, G:0.31, T:0.24
Consensus pattern (39 bp):
GGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCT
Found at i:75313219 original size:77 final size:77
Alignment explanation
Indices: 75313103--75313295 Score: 325
Period size: 77 Copynumber: 2.5 Consensus size: 77
75313093 GCAAGACGCG
*
75313103 GGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCA
1 GGAAATGTATCCGGGCTAAAGT-CCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCCCA
75313168 CAGGCTTCGTGCT
65 CAGGCTTCGTGCT
* *
75313181 GGAAATATATCCGGGCTAAAGTCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCCCGC
1 GGAAATGTATCCGGGCTAAAGTCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCCCAC
75313246 AGGCTTCGTGCT
66 AGGCTTCGTGCT
* *
75313258 GGAAATGTAT-CGGGTTAAAGTCCGCAGGCTTTGTGCTG
1 GGAAATGTATCCGGGCTAAAGTCCGCAGGCTTCGTGCTG
75313296 ATAATATAAT
Statistics
Matches: 109, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
76 26 0.24
77 62 0.57
78 21 0.19
ACGTcount: A:0.22, C:0.24, G:0.31, T:0.24
Consensus pattern (77 bp):
GGAAATGTATCCGGGCTAAAGTCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCCCAC
AGGCTTCGTGCT
Done.