Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 263 of 444
Found at i:75317000 original size:40 final size:40
Alignment explanation
Indices: 75316955--75317081 Score: 157
Period size: 40 Copynumber: 3.2 Consensus size: 40
75316945 CGGAATATAA
75316955 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
75316995 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
75317035 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
75317075 CCGGATA
1 CCGGATA
75317082 AAATTTCCAG
Statistics
Matches: 72, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:75317105 original size:80 final size:80
Alignment explanation
Indices: 75316971--75317120 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 80
75316961 ATAACCACGT
* * * *
75316971 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGACTCGCACGAACGCCTTCGGGGCTTAGCC
75317036 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* ** ** *
75317051 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTC-CAGCATTAACGTCTTCGGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGACTC-GCACGAACGCCTTCGGGGCTTAGC
75317115 CCGGAT
65 CCGGAT
75317121 ATCATTCAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.02
80 58 0.98
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGACTCGCACGAACGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:75320045 original size:16 final size:16
Alignment explanation
Indices: 75320021--75320054 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
75320011 GTTTTCATCA
*
75320021 TTTTCTTTCCCTTTCT
1 TTTTCTTTCCATTTCT
*
75320037 TTTTTTTTCCATTTCT
1 TTTTCTTTCCATTTCT
75320053 TT
1 TT
75320055 ATTACTAACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTTCTTTCCATTTCT
Found at i:75325040 original size:22 final size:22
Alignment explanation
Indices: 75325013--75325054 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
75325003 GTCTGCCGGC
75325013 GCTGTCCCTTGCGTGGGAGCCG
1 GCTGTCCCTTGCGTGGGAGCCG
75325035 GCTGTCCCTTGCGTGGGAGC
1 GCTGTCCCTTGCGTGGGAGC
75325055 AGGCGCTACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.05, C:0.31, G:0.40, T:0.24
Consensus pattern (22 bp):
GCTGTCCCTTGCGTGGGAGCCG
Found at i:75326024 original size:78 final size:80
Alignment explanation
Indices: 75325934--75326089 Score: 210
Period size: 78 Copynumber: 2.0 Consensus size: 80
75325924 AGCCCAGTTA
*
75325934 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCAGATTTAATAACTGA-CACAATGCCTTCG
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCAGATTTAATAACTGAGCACAAAGCCTTCG
75325997 GG-CTTAGCCCGGAAT
65 GGACTTAGCCCGGAAT
** ** * * *
75326012 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCTGGATTTAGTCACTTAGCACAAAGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCAGATTTAATAACTGAGCACAAAGCCTTCGG
75326077 GACTTAGCCCGGA
66 GACTTAGCCCGGA
75326090 CATCATTCGA
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
77 3 0.04
78 39 0.58
79 14 0.21
80 11 0.16
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCAGATTTAATAACTGAGCACAAAGCCTTCGG
GACTTAGCCCGGAAT
Found at i:75326030 original size:39 final size:40
Alignment explanation
Indices: 75325906--75326089 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
75325896 GCTACTCGTT
* * *
75325906 CAAATGCCTTGGGGACATAGCCCAG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
75325946 CAAATGCCTTCGGGACTTAACCCAGATTTAATAACT-G-A
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
75325984 CACAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CA-AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
75326024 CAAATGCCTTC-GGATCTTAGTCTGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
75326065 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75326090 CATCATTCGA
Statistics
Matches: 121, Mismatches: 15, Indels: 16
0.80 0.10 0.11
Matches are distributed among these distances:
38 22 0.18
39 23 0.19
40 63 0.52
41 13 0.11
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:75327378 original size:18 final size:18
Alignment explanation
Indices: 75327330--75327392 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 18
75327320 AGGACGGACA
*
75327330 CATTT-TTTTTTTCTTTT
1 CATTTCTTTTTTTCTTTC
* **
75327347 CTTTTCATCATTTTCTTTC
1 CATTTC-TTTTTTTCTTTC
* *
75327366 CCTTTCTTTTTTTTTTTC
1 CATTTCTTTTTTTCTTTC
75327384 CATTTCTTT
1 CATTTCTTT
75327393 ATTACTAACT
Statistics
Matches: 35, Mismatches: 9, Indels: 3
0.74 0.19 0.06
Matches are distributed among these distances:
17 4 0.11
18 17 0.49
19 14 0.40
ACGTcount: A:0.06, C:0.21, G:0.00, T:0.73
Consensus pattern (18 bp):
CATTTCTTTTTTTCTTTC
Found at i:75329515 original size:40 final size:40
Alignment explanation
Indices: 75329388--75329517 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
75329378 ATGCTGGAAA
* *
75329388 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
75329428 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
75329468 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
75329508 TTATATCCGG
1 TTATATCCGG
75329518 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:75331235 original size:14 final size:13
Alignment explanation
Indices: 75331212--75331243 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
75331202 AGAATATCAA
75331212 AACAATAATTAAG
1 AACAATAATTAAG
75331225 AACACATAATTAAG
1 AACA-ATAATTAAG
75331239 AACAA
1 AACAA
75331244 GTCAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:75334049 original size:28 final size:28
Alignment explanation
Indices: 75334016--75334078 Score: 117
Period size: 28 Copynumber: 2.2 Consensus size: 28
75334006 TGTCCATGGG
75334016 CCGTGTCCCTCACACGGCCACGACACGT
1 CCGTGTCCCTCACACGGCCACGACACGT
*
75334044 CCGTGTCCCTCACACGGCCATGACACGT
1 CCGTGTCCCTCACACGGCCACGACACGT
75334072 CCGTGTC
1 CCGTGTC
75334079 TAAAAACCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.16, C:0.44, G:0.22, T:0.17
Consensus pattern (28 bp):
CCGTGTCCCTCACACGGCCACGACACGT
Found at i:75336960 original size:27 final size:27
Alignment explanation
Indices: 75336929--75337285 Score: 459
Period size: 27 Copynumber: 13.3 Consensus size: 27
75336919 CCCTACATGG
* *
75336929 TAAATTGACGATTTTGCCCTCAT-TGA
1 TAAAATGACGATTTTGCCCTTATGTGA
* * *
75336955 TAAAATAACGATTTTTCCCTTATGTAA
1 TAAAATGACGATTTTGCCCTTATGTGA
* * *
75336982 T-AAATAATGATTTTGCCCTCATGTGA
1 TAAAATGACGATTTTGCCCTTATGTGA
* *
75337008 TAAAATGACAATTTTGCCCATATGTGA
1 TAAAATGACGATTTTGCCCTTATGTGA
* *
75337035 TAAAATGACGA-TTTCCCCTTATGTCA
1 TAAAATGACGATTTTGCCCTTATGTGA
* *
75337061 TAAAATGACGATTTTACCCTTATGCGA
1 TAAAATGACGATTTTGCCCTTATGTGA
* * *
75337088 TAAAATGACGATTTTACCCTCATGCGA
1 TAAAATGACGATTTTGCCCTTATGTGA
* *
75337115 TAAAATGACGATCTTGCCTTTATGTGA
1 TAAAATGACGATTTTGCCCTTATGTGA
75337142 TAAAATGACGATTTTGCCCTTATGTGA
1 TAAAATGACGATTTTGCCCTTATGTGA
*
75337169 TAAAATGACGATTTTGCCCTTATGAGA
1 TAAAATGACGATTTTGCCCTTATGTGA
75337196 TAAAATGACGATTTTGCCCTTATGTGA
1 TAAAATGACGATTTTGCCCTTATGTGA
* * * *
75337223 TAAAATGATGATTTTACCCTCATGTAA
1 TAAAATGACGATTTTGCCCTTATGTGA
*
75337250 TAAAGTGACGATTTTGCCCTTATGTGA
1 TAAAATGACGATTTTGCCCTTATGTGA
*
75337277 TAACATGAC
1 TAAAATGAC
75337286 CGAAATACCC
Statistics
Matches: 286, Mismatches: 42, Indels: 5
0.86 0.13 0.02
Matches are distributed among these distances:
26 64 0.22
27 222 0.78
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (27 bp):
TAAAATGACGATTTTGCCCTTATGTGA
Found at i:75337443 original size:23 final size:23
Alignment explanation
Indices: 75337400--75337449 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
75337390 CTGTATTTGA
75337400 GCATGCCATGTTATATGTATGTT
1 GCATGCCATGTTATATGTATGTT
75337423 GCAT-CCATGTATAATAT-TATGTT
1 GCATGCCATGT-T-ATATGTATGTT
75337446 GCAT
1 GCAT
75337450 TGCATGAGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 15 0.60
24 4 0.16
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (23 bp):
GCATGCCATGTTATATGTATGTT
Found at i:75339459 original size:40 final size:40
Alignment explanation
Indices: 75339404--75339613 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
75339394 AACATTGGAA
75339404 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75339444 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75339484 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
75339524 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
75339563 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
75339604 CTATATCCGG
1 ATATATCCGG
75339614 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:75361782 original size:26 final size:25
Alignment explanation
Indices: 75361744--75361830 Score: 79
Period size: 25 Copynumber: 3.4 Consensus size: 25
75361734 TTAGATTTTA
*
75361744 ATTATAAAATATATATATATGAA-TT
1 ATTATAAATTATAT-TATATGAATTT
* *
75361769 ATTAATAAATTATATTAAATTAATTT
1 ATT-ATAAATTATATTATATGAATTT
*
75361795 ATTAT-AATTATATTATAAGATATTT
1 ATTATAAATTATATTATATGA-ATTT
75361820 ATATGATAAAT
1 AT-T-ATAAAT
75361831 AAAATAATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
24 12 0.24
25 17 0.34
26 16 0.32
27 2 0.04
28 3 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.47
Consensus pattern (25 bp):
ATTATAAATTATATTATATGAATTT
Found at i:75361803 original size:14 final size:15
Alignment explanation
Indices: 75361766--75361811 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
75361756 ATATATATGA
*
75361766 ATTATTAATAAATTAT
1 ATTA-TAATTAATTAT
75361782 ATTA-AATTAATT-T
1 ATTATAATTAATTAT
75361795 ATTATAATTATATTAT
1 ATTATAATTA-ATTAT
75361811 A
1 A
75361812 AGATATTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 5 0.19
14 12 0.46
15 3 0.12
16 6 0.23
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTATAATTAATTAT
Found at i:75362948 original size:20 final size:20
Alignment explanation
Indices: 75362923--75362963 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
75362913 GGATTGGAAG
75362923 TGTTCAAGGATACTCTGACT
1 TGTTCAAGGATACTCTGACT
75362943 TGTTCAAGGATACTCTGACT
1 TGTTCAAGGATACTCTGACT
75362963 T
1 T
75362964 TGTGTCGATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (20 bp):
TGTTCAAGGATACTCTGACT
Found at i:75363077 original size:51 final size:54
Alignment explanation
Indices: 75362993--75363107 Score: 137
Period size: 51 Copynumber: 2.2 Consensus size: 54
75362983 AAGTGTCGAC
* * *
75362993 TACTGTTACTGTTCCAGATTCGTTCCGAAGAGGTACT-T-CGTACC-TTACTGT
1 TACTATTACTATTCCAGATTCGTTCCGAAGAGGTACTCTGCGTACCGCTACTGT
* * * * *
75363044 TACTTTTACTATTCTAGATTTGTTCCGATGAGGTACTCTGTGTACCGCTACTGT
1 TACTATTACTATTCCAGATTCGTTCCGAAGAGGTACTCTGCGTACCGCTACTGT
75363098 TACTATTACT
1 TACTATTACT
75363108 GTTACTATTA
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
51 32 0.60
52 1 0.02
53 5 0.09
54 15 0.28
ACGTcount: A:0.20, C:0.22, G:0.17, T:0.41
Consensus pattern (54 bp):
TACTATTACTATTCCAGATTCGTTCCGAAGAGGTACTCTGCGTACCGCTACTGT
Found at i:75363124 original size:12 final size:12
Alignment explanation
Indices: 75363092--75363117 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
75363082 TGTGTACCGC
75363092 TACTGTTACTAT
1 TACTGTTACTAT
75363104 TACTGTTACTAT
1 TACTGTTACTAT
75363116 TA
1 TA
75363118 ACGTTACGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.15, G:0.08, T:0.50
Consensus pattern (12 bp):
TACTGTTACTAT
Found at i:75363305 original size:17 final size:18
Alignment explanation
Indices: 75363261--75363306 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
75363251 ACTGAATATT
*
75363261 TGACTGTTACTGAATTAC
1 TGACTGTTACTGAATGAC
* *
75363279 TGATTATTACTG-ATGAC
1 TGACTGTTACTGAATGAC
75363296 TGACTGTTACT
1 TGACTGTTACT
75363307 AAAATGAATA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
17 13 0.57
18 10 0.43
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.41
Consensus pattern (18 bp):
TGACTGTTACTGAATGAC
Found at i:75364068 original size:11 final size:10
Alignment explanation
Indices: 75364031--75364076 Score: 51
Period size: 11 Copynumber: 4.6 Consensus size: 10
75364021 CACTTAGACA
*
75364031 TAATTATGAT
1 TAATTATGTT
75364041 TAATTTATGTT
1 TAA-TTATGTT
75364052 TAATTATGTCT
1 TAATTATGT-T
75364063 TAATTA-G-T
1 TAATTATGTT
75364071 TAATTA
1 TAATTA
75364077 AGAAAAGTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
8 7 0.21
10 10 0.30
11 16 0.48
ACGTcount: A:0.35, C:0.02, G:0.09, T:0.54
Consensus pattern (10 bp):
TAATTATGTT
Found at i:75365070 original size:10 final size:10
Alignment explanation
Indices: 75365054--75365094 Score: 55
Period size: 10 Copynumber: 4.1 Consensus size: 10
75365044 TTATCTATAT
*
75365054 ATGAATTGGA
1 ATGAATTGAA
*
75365064 GTGAATTGAA
1 ATGAATTGAA
75365074 ATGAATTGAA
1 ATGAATTGAA
*
75365084 CTGAATTGAA
1 ATGAATTGAA
75365094 A
1 A
75365095 GAAATGCATA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.44, C:0.02, G:0.24, T:0.29
Consensus pattern (10 bp):
ATGAATTGAA
Found at i:75365079 original size:20 final size:20
Alignment explanation
Indices: 75365054--75365094 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
75365044 TTATCTATAT
* *
75365054 ATGAATTGGAGTGAATTGAA
1 ATGAATTGAACTGAATTGAA
75365074 ATGAATTGAACTGAATTGAA
1 ATGAATTGAACTGAATTGAA
75365094 A
1 A
75365095 GAAATGCATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.44, C:0.02, G:0.24, T:0.29
Consensus pattern (20 bp):
ATGAATTGAACTGAATTGAA
Found at i:75369888 original size:43 final size:43
Alignment explanation
Indices: 75369840--75369925 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
75369830 GAGATATGTG
* ** *
75369840 GCATCCGAGCTCGTTGGGAGGTCCGAGTTCATTATAGATGCAA
1 GCATCCGAGCTCATTCAGAGGTCCGAGTTCATGATAGATGCAA
* *
75369883 GCATCCGAGCTCATTCAGTGGTCCGAGTTCATGATGGATGCAA
1 GCATCCGAGCTCATTCAGAGGTCCGAGTTCATGATAGATGCAA
75369926 TTCATGTAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (43 bp):
GCATCCGAGCTCATTCAGAGGTCCGAGTTCATGATAGATGCAA
Found at i:75371218 original size:28 final size:29
Alignment explanation
Indices: 75371178--75371232 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
75371168 CACGGACGAT
* *
75371178 GACACGGGCGTGT-CTAGGCCGTGTGAGG
1 GACACAGGCGTGTGCTAGGCCATGTGAGG
*
75371206 GACACAGGCGTGTGCTCGGCCATGTGA
1 GACACAGGCGTGTGCTAGGCCATGTGA
75371233 AAACCCCTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.16, C:0.24, G:0.42, T:0.18
Consensus pattern (29 bp):
GACACAGGCGTGTGCTAGGCCATGTGAGG
Found at i:75372720 original size:29 final size:28
Alignment explanation
Indices: 75372678--75372744 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
75372668 CAGATCCATA
* * *
75372678 CTTATTCATTTGGCCCTTTTAGGCCCAAT
1 CTTATTCATATGGCCC-GTCAGGCCCAAT
75372707 CTTATTCATATGGCCCGTCAGGCCCAAT
1 CTTATTCATATGGCCCGTCAGGCCCAAT
**
75372735 CACATTCATA
1 CTTATTCATA
75372745 GTCATTCAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
28 18 0.55
29 15 0.45
ACGTcount: A:0.22, C:0.30, G:0.13, T:0.34
Consensus pattern (28 bp):
CTTATTCATATGGCCCGTCAGGCCCAAT
Found at i:75372982 original size:16 final size:17
Alignment explanation
Indices: 75372956--75372991 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
75372946 GTAGCCAAAC
75372956 TTCTGGCTTTTTGGCAT
1 TTCTGGCTTTTTGGCAT
75372973 TTCT-GCTTTTTGGCAT
1 TTCTGGCTTTTTGGCAT
75372989 TTC
1 TTC
75372992 GGGATTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.06, C:0.19, G:0.19, T:0.56
Consensus pattern (17 bp):
TTCTGGCTTTTTGGCAT
Found at i:75381452 original size:47 final size:47
Alignment explanation
Indices: 75381398--75381966 Score: 888
Period size: 47 Copynumber: 12.1 Consensus size: 47
75381388 TTAGGATTTT
** *
75381398 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
75381445 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
75381492 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
75381539 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
75381586 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCC-AATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
75381632 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
75381679 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
75381726 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
75381773 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCAAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
75381820 ATATGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
75381867 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
75381914 ATGTGGTGAATATGAACATGCATATATGCGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
75381961 ATGTGA
1 ATGTGA
75381967 AATATACATA
Statistics
Matches: 475, Mismatches: 46, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
46 42 0.09
47 433 0.91
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:75381500 original size:25 final size:25
Alignment explanation
Indices: 75381425--75381500 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
75381415 GTGTATATAT
75381425 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
75381450 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
75381472 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
75381497 GTGA
1 GTGA
75381501 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:75381542 original size:22 final size:22
Alignment explanation
Indices: 75381517--75381592 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
75381507 ACATGCATAT
75381517 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
75381539 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
75381563 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
75381586 ATGTGAT
1 ATGTGAT
75381593 GAATGTGAGC
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 15 0.37
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:75381547 original size:141 final size:141
Alignment explanation
Indices: 75381398--75381966 Score: 1032
Period size: 141 Copynumber: 4.0 Consensus size: 141
75381388 TTAGGATTTT
** *
75381398 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
75381463 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGG
66 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGG
75381528 CCGAATGGCCA
131 CCGAATGGCCA
75381539 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
75381604 TGCATATGTGTGATAAGGCC-AATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGG
66 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGG
*
75381668 CCGAATGGCCT
131 CCGAATGGCCA
75381679 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
75381744 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGG
66 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGG
* *
75381809 CCAAATGGCCT
131 CCGAATGGCCA
*
75381820 ATATGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
* * *
75381885 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGCGGTAAAG
66 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGG
*
75381950 CCGAATGGTCA
131 CCGAATGGCCA
75381961 ATGTGA
1 ATGTGA
75381967 AATATACATA
Statistics
Matches: 414, Mismatches: 13, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
140 139 0.34
141 275 0.66
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (141 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
TGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGG
CCGAATGGCCA
Found at i:75381781 original size:25 final size:25
Alignment explanation
Indices: 75381706--75381781 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
75381696 ATGCATATAT
75381706 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
75381731 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
75381753 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
75381778 GTGA
1 GTGA
75381782 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:75381922 original size:25 final size:25
Alignment explanation
Indices: 75381847--75381922 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
75381837 ATGCATATAT
75381847 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
75381872 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
75381894 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
75381919 GTGA
1 GTGA
75381923 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:75382353 original size:37 final size:37
Alignment explanation
Indices: 75382171--75382352 Score: 292
Period size: 37 Copynumber: 4.9 Consensus size: 37
75382161 GGAAATATAT
*
75382171 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
75382208 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
75382245 CCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
75382282 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
75382319 TCCGGGTAAGGCCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
75382353 TCGTCTGAGC
Statistics
Matches: 136, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 136 1.00
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:75385543 original size:43 final size:44
Alignment explanation
Indices: 75385490--75385624 Score: 146
Period size: 51 Copynumber: 2.9 Consensus size: 44
75385480 GAGATATGTG
*
75385490 GCATCTGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGC-TA
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCATA
* * *
75385533 GCATCCGAGCTTGTTGAGTGGTCCGAGTTCATGATGTATGAGATTCATGTA
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTC---AT-TATG-GATGCA--TA
* *
75385584 ACATCCGAGCTCGTTGAGAGGTCCAAGTTCATTATGGATGC
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGC
75385625 GTTACTTGTT
Statistics
Matches: 75, Mismatches: 9, Indels: 13
0.77 0.09 0.13
Matches are distributed among these distances:
43 27 0.36
46 6 0.08
47 8 0.11
48 6 0.08
51 28 0.37
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (44 bp):
GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCATA
Found at i:75386866 original size:28 final size:28
Alignment explanation
Indices: 75386826--75386909 Score: 114
Period size: 28 Copynumber: 3.0 Consensus size: 28
75386816 CACGGACGAT
*
75386826 GACACGGGCATGTCTAGGCTGTGTGAGG
1 GACACGGGCATGTCTAGGCTGTGTGAAG
*
75386854 GACACGGGCATGTCTAGGCCGTGTGAAG
1 GACACGGGCATGTCTAGGCTGTGTGAAG
* * *
75386882 GACACGGGCTTGTGCTCGACTGTGTGAA
1 GACACGGGCATGT-CTAGGCTGTGTGAA
75386910 ATCCCTTGTA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
28 38 0.78
29 11 0.22
ACGTcount: A:0.19, C:0.20, G:0.39, T:0.21
Consensus pattern (28 bp):
GACACGGGCATGTCTAGGCTGTGTGAAG
Found at i:75391602 original size:40 final size:40
Alignment explanation
Indices: 75391536--75391702 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
75391526 AAATTGAATG
* * *
75391536 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
75391575 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
75391615 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
75391655 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
75391695 ATATCCGG
1 ATATCCGG
75391703 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:75398336 original size:56 final size:53
Alignment explanation
Indices: 75398243--75398351 Score: 132
Period size: 56 Copynumber: 2.0 Consensus size: 53
75398233 ATGAAAAAAA
75398243 AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAGG
1 AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAGG
***
75398296 AAAGAAAAGAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAGG
1 AAAGAAAA-AAAAA--TGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAGG
75398352 GAAAAGGGGG
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
53 8 0.17
54 5 0.10
55 2 0.04
56 30 0.62
57 3 0.06
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (53 bp):
AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAGG
Found at i:75399610 original size:40 final size:40
Alignment explanation
Indices: 75399544--75399710 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
75399534 AAATTGAATG
* * *
75399544 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
75399583 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
75399623 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
75399663 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
75399703 ATATCCGG
1 ATATCCGG
75399711 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:75401948 original size:48 final size:49
Alignment explanation
Indices: 75401873--75402002 Score: 158
Period size: 49 Copynumber: 2.7 Consensus size: 49
75401863 GGTAAAGTGT
** *
75401873 CGATGCCATGTCTTAGACATGGTCTTACACTGGCTATCATCTTCAA-G-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCA-CAT-AACGTGC
* *
75401922 CGATGCCATGTCCCA-ACATGGTCTTACACTAGCTCTCACATAACTGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCACATAAC-GTGC
*
75401971 CGATGCCATGTCCCAGACATGGACTTACACTG
1 CGATGCCATGTCCCAGACATGGTCTTACACTG
75402003 ACACATCTCG
Statistics
Matches: 70, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
46 2 0.03
47 2 0.03
48 22 0.31
49 30 0.43
50 14 0.20
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCACATAACGTGC
Found at i:75401973 original size:49 final size:49
Alignment explanation
Indices: 75401873--75402187 Score: 168
Period size: 46 Copynumber: 6.7 Consensus size: 49
75401863 GGTAAAGTGT
** * *
75401873 CGATGCCATGTCTTAGACATGGTCTTACACTGGCTATCATCTTCAAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCAAGGC
*
75401922 CGATGCCATGTCCCA-ACATGGTCTTACACTAGCTCTCA-CAT-AACTGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCAA--G-GC
* *
75401971 CGATGCCATGTCCCAGACATGGACTTACACT-GAC-A-CATC-TCGTA-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-CTATCATCATC-AAGGC
* * * * * * *
75402017 CGAT-ACATGTCCTAGACAT-GTCTTATACTGGCT-TACGTC-CCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTAT-CATCATCAAGGC
** * * * ***
75402063 TAATG-CATATCTCA-ACAT-GTCTTACACTAGC-A-C-TCGTCCAATAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCAT-CAAGGC
* * * **
75402107 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCAAGGC
*
75402155 TGATG-CATGTCCCAGACAT-GTCTTACACTAGCT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCT
75402188 CACACAAATG
Statistics
Matches: 201, Mismatches: 42, Indels: 49
0.69 0.14 0.17
Matches are distributed among these distances:
42 2 0.01
43 1 0.00
44 14 0.07
45 37 0.18
46 39 0.19
47 28 0.14
48 29 0.14
49 33 0.16
50 18 0.09
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCAAGGC
Found at i:75402132 original size:47 final size:45
Alignment explanation
Indices: 75402077--75402186 Score: 125
Period size: 47 Copynumber: 2.4 Consensus size: 45
75402067 GCATATCTCA
*
75402077 ACATGTCTTACACTAGCACTCGTCCAATAT-C-GATGCCATGTCCCAG
1 ACATGTCTTACACTAGCACTCAT--AATATGCTGATG-CATGTCCCAG
* * *
75402123 ACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCCAG
1 ACAT-GTCTTACACTAGCACTCATAATAT-GCTGATGCATGTCCCAG
75402170 ACATGTCTTACACTAGC
1 ACATGTCTTACACTAGC
75402187 TCACACAAAT
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
45 4 0.07
46 16 0.29
47 31 0.56
48 4 0.07
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (45 bp):
ACATGTCTTACACTAGCACTCATAATATGCTGATGCATGTCCCAG
Found at i:75409738 original size:46 final size:45
Alignment explanation
Indices: 75409643--75409807 Score: 147
Period size: 46 Copynumber: 3.6 Consensus size: 45
75409633 GTGTCAATGC
* ***
75409643 CATGTCCCAAACATGGTCTTACACT-G-ACACATCTTGTAGGCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCACACATC-CCAAGGCGATG
*
75409688 CATGTCCCAGACATGTCTTATACTGGCTA-ACATCCCAAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGC-ACACATCCCAAGGC-GATG
* * * * * *
75409734 CATGTCCCAAACATGTCTTACACTAGCACTCGTCTCAATGCAGATG
1 CATGTCCCAGACATGTCTTACACTGGCACACATCCCAAGGC-GATG
75409780 CCATGTCCCAGACATGGTCTTACACTGG
1 -CATGTCCCAGACAT-GTCTTACACTGG
75409808 GTCTCATAAT
Statistics
Matches: 98, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
44 9 0.09
45 19 0.19
46 45 0.46
47 14 0.14
48 11 0.11
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCACACATCCCAAGGCGATG
Found at i:75412141 original size:13 final size:13
Alignment explanation
Indices: 75412097--75412141 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
75412087 ATAGAACAAG
75412097 AAAAAC-TAAAAA
1 AAAAACATAAAAA
75412109 ATAAAA-ATAAAAA
1 A-AAAACATAAAAA
75412122 AAAAACATAAAAA
1 AAAAACATAAAAA
*
75412135 AACAACA
1 AAAAACA
75412142 ACTAATGTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
12 5 0.17
13 24 0.83
ACGTcount: A:0.82, C:0.09, G:0.00, T:0.09
Consensus pattern (13 bp):
AAAAACATAAAAA
Found at i:75415923 original size:19 final size:19
Alignment explanation
Indices: 75415895--75415933 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
75415885 TTGAATTATT
**
75415895 AAATTATTAATTATATAAA
1 AAATTATTAAAAATATAAA
*
75415914 AAATTTTTAAAAATATAAA
1 AAATTATTAAAAATATAAA
75415933 A
1 A
75415934 TCACTTTAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
AAATTATTAAAAATATAAA
Found at i:75418569 original size:17 final size:17
Alignment explanation
Indices: 75418529--75418570 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
75418519 CTAACTTTCA
*
75418529 TTGTTGATAATAAATAT
1 TTGTTGGTAATAAATAT
75418546 TTGTTGGTAATAAATAT
1 TTGTTGGTAATAAATAT
75418563 TTGTTGGT
1 TTGTTGGT
75418571 TTTCATGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (17 bp):
TTGTTGGTAATAAATAT
Found at i:75423486 original size:52 final size:53
Alignment explanation
Indices: 75423424--75423567 Score: 159
Period size: 52 Copynumber: 2.7 Consensus size: 53
75423414 TTATTGTAAA
* * *
75423424 TATGTAAACTAATTATAGTAAATGTATATTAAGTAATTATGATTAA-TTATAT
1 TATGTAAACTAATTATGGTAAATATATATTAAGTAATTATGATGAATTTATAT
* * * * *
75423476 TATGTGAACTAATTATGGTTAATATATATTAATTGATTATGGTGAATTTATAT
1 TATGTAAACTAATTATGGTAAATATATATTAAGTAATTATGATGAATTTATAT
* *
75423529 TA-GATAAACAAATTATGGTAAA-ACTATATCAAGTAATTA
1 TATG-TAAACTAATTATGGTAAATA-TATATTAAGTAATTA
75423568 ACTATTTACT
Statistics
Matches: 75, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
52 40 0.53
53 35 0.47
ACGTcount: A:0.43, C:0.03, G:0.12, T:0.42
Consensus pattern (53 bp):
TATGTAAACTAATTATGGTAAATATATATTAAGTAATTATGATGAATTTATAT
Found at i:75428640 original size:14 final size:14
Alignment explanation
Indices: 75428621--75428656 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
75428611 CTAAATAAAT
75428621 CATAACTCGAGTTA
1 CATAACTCGAGTTA
75428635 CATAACTCGAGTTA
1 CATAACTCGAGTTA
*
75428649 CAAAACTC
1 CATAACTC
75428657 AAAATTCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.39, C:0.25, G:0.11, T:0.25
Consensus pattern (14 bp):
CATAACTCGAGTTA
Found at i:75432979 original size:10 final size:10
Alignment explanation
Indices: 75432949--75432983 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
75432939 TTTTGCAAGC
75432949 TCATTTTCTT
1 TCATTTTCTT
*
75432959 TCTTCTTTCTT
1 TCAT-TTTCTT
75432970 TCATTTTCTT
1 TCATTTTCTT
75432980 TCAT
1 TCAT
75432984 CTTTTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.09, C:0.23, G:0.00, T:0.69
Consensus pattern (10 bp):
TCATTTTCTT
Found at i:75433945 original size:3 final size:3
Alignment explanation
Indices: 75433937--75433986 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
75433927 ACTTCAGTAT
75433937 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
75433985 TT
1 TT
75433987 TTTTACTTCG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:75434672 original size:20 final size:20
Alignment explanation
Indices: 75434619--75434672 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 20
75434609 ACTAAAAAGT
* *
75434619 AGCTAAATTGAACTCAAATG
1 AGCTGAATTGAGCTCAAATG
* * *
75434639 AGCTGAAATAAGCTCAATTG
1 AGCTGAATTGAGCTCAAATG
*
75434659 AGCTGATTTGAGCT
1 AGCTGAATTGAGCT
75434673 GAATGGGGCT
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (20 bp):
AGCTGAATTGAGCTCAAATG
Found at i:75435466 original size:2 final size:2
Alignment explanation
Indices: 75435459--75435497 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
75435449 GTGTGGAACT
75435459 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
75435498 GTAAACCAAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:75439443 original size:28 final size:28
Alignment explanation
Indices: 75439399--75439462 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 28
75439389 CCTGACACAA
*
75439399 GCCCGTGTCCTTTACATGGCTAGGACAT
1 GCCCGTGTCCTTTACATGGCTAGGACAC
*
75439427 GCCTGTGTCCTTTACATGGCTAGGACAC
1 GCCCGTGTCCTTTACATGGCTAGGACAC
75439455 GCCCGTGT
1 GCCCGTGT
75439463 GCTAGCCTGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.16, C:0.30, G:0.27, T:0.28
Consensus pattern (28 bp):
GCCCGTGTCCTTTACATGGCTAGGACAC
Found at i:75441157 original size:55 final size:54
Alignment explanation
Indices: 75441085--75441236 Score: 148
Period size: 55 Copynumber: 2.8 Consensus size: 54
75441075 TATCCTTGCT
* *
75441085 TTAT-GAACTCA-CTAATGCTATGCCTTGGCATGGTCTTACATG-GGACCTTTTCC
1 TTATAGAACTCATC-AATGCCATGCCTTGGCATGGTCTTACATGAGGACC-TTACC
** ** ***
75441138 TTATAGTAACTCATCAATGCCATGTTTTGAAATGGTCTTACATGATTTCCTTACC
1 TTATAG-AACTCATCAATGCCATGCCTTGGCATGGTCTTACATGAGGACCTTACC
* * *
75441193 TTATAGAACTTATCAATACCATGCCTTAGCATGGTCTTACATGA
1 TTATAGAACTCATCAATGCCATGCCTTGGCATGGTCTTACATGA
75441237 TATCCTTATC
Statistics
Matches: 79, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
53 4 0.05
54 32 0.41
55 40 0.51
56 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (54 bp):
TTATAGAACTCATCAATGCCATGCCTTGGCATGGTCTTACATGAGGACCTTACC
Found at i:75441274 original size:47 final size:47
Alignment explanation
Indices: 75441222--75441343 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
75441212 CATGCCTTAG
* *
75441222 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
75441269 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
75441316 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
75441344 GTACCAATGC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:75441527 original size:44 final size:44
Alignment explanation
Indices: 75441478--75441561 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
75441468 TCCTTAACCG
* *
75441478 TCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTTCCA
1 TCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGACTTTTCCA
* *
75441522 TCAATTCTTCCTTAATTGCCATGGTACAACCATGGACTTT
1 TCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTT
75441562 AAGATATCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 2 0.06
44 33 0.94
ACGTcount: A:0.26, C:0.25, G:0.12, T:0.37
Consensus pattern (44 bp):
TCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTTTCCA
Found at i:75464813 original size:122 final size:122
Alignment explanation
Indices: 75464596--75464839 Score: 461
Period size: 122 Copynumber: 2.0 Consensus size: 122
75464586 CCTTAAATGG
75464596 TTTTTGCATGCAAAACAAAATAAAAATAAATATTAGCTCATTGATTATCCATCGTTTAGAAAATA
1 TTTTTGCATGCAAAACAAAATAAAAATAAATATTAGCTCATTGATTATCCATCGTTTAGAAAATA
* *
75464661 CTAAGCTGCATGTTGTGGTCGGATCATAATGCATGAAGATAGCTTGTGTTAATAGAT
66 CTAAGCTACATGTTGTGGTCGGATCATAATGCAAGAAGATAGCTTGTGTTAATAGAT
*
75464718 TTTTTGCATGCAAAATAAAATAAAAATAAATATTAGCTCATTGATTATCCATCGTTTAGAAAATA
1 TTTTTGCATGCAAAACAAAATAAAAATAAATATTAGCTCATTGATTATCCATCGTTTAGAAAATA
75464783 CTAAGCTACATGTTGTGGTCGGATCATAATGCAAGAAGATAGCTTGTGTTAATAGAT
66 CTAAGCTACATGTTGTGGTCGGATCATAATGCAAGAAGATAGCTTGTGTTAATAGAT
75464840 GATCTAAATA
Statistics
Matches: 119, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
122 119 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.34
Consensus pattern (122 bp):
TTTTTGCATGCAAAACAAAATAAAAATAAATATTAGCTCATTGATTATCCATCGTTTAGAAAATA
CTAAGCTACATGTTGTGGTCGGATCATAATGCAAGAAGATAGCTTGTGTTAATAGAT
Found at i:75469935 original size:20 final size:20
Alignment explanation
Indices: 75469910--75469968 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
75469900 TAAATATGGT
75469910 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
75469930 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
75469950 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
75469969 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:75469950 original size:11 final size:11
Alignment explanation
Indices: 75469914--75469968 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
75469904 TATGGTATGT
75469914 ATGATATGCAC
1 ATGATATGCAC
* *
75469925 ATGAAATG--T
1 ATGATATGCAC
75469934 ATGATATGCAC
1 ATGATATGCAC
*
75469945 ATGATATG--T
1 ATGATATGCAC
75469954 ATGATATGCAC
1 ATGATATGCAC
75469965 ATGA
1 ATGA
75469969 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:75470048 original size:24 final size:24
Alignment explanation
Indices: 75470019--75470090 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
75470009 GAGGAAGTGA
75470019 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
75470043 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
75470067 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
75470091 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
24 30 0.73
25 11 0.27
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:75470317 original size:31 final size:31
Alignment explanation
Indices: 75470282--75470345 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
75470272 CGTTTACAGT
75470282 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
75470313 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
75470344 AA
1 AA
75470346 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:75484277 original size:49 final size:49
Alignment explanation
Indices: 75483979--75484488 Score: 332
Period size: 49 Copynumber: 10.6 Consensus size: 49
75483969 TTCTTGAGCT
* * * * *
75483979 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAC-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATAGCATCGGCCTCGATGATGATAGTC
* * * * * *
75484025 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGA-GACGAGT-GCC
1 AGTGTAAGACCATGTCTGGGACATAGCATCGGCCTCGATGATGA-TAGTC
* * * *
75484073 AGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCTCG-GGACG-TAAGCC
1 AGTGTAAGACCATGTCTGGGACATAGCATCGGCCTCGATGATGAT-AGTC
* * *
75484119 AGTATAAGA-TATGTCTGGGACAT-GCAACGG-CTACGA-GATG-T-GTC
1 AGTGTAAGACCATGTCTGGGACATAGCATCGGCCT-CGATGATGATAGTC
** * * * *
75484163 AGTACAAGACCATGTCTAGGACATGGCATCAG--TACGGAT-ATGCGAGAG-C
1 AGTGTAAGACCATGTCTGGGACATAGCATCGGCCT-C-GATGAT--GATAGTC
* *** *
75484212 TAGTGTAAGATCATGTCTACAACATAGCATCAGCCTCGATGATGATAGTC
1 -AGTGTAAGACCATGTCTGGGACATAGCATCGGCCTCGATGATGATAGTC
* * * *
75484262 AGTGTAAGACCATGTCTGGGACATCGCATCGGCATGGAT-ATGCGAAAG-C
1 AGTGTAAGACCATGTCTGGGACATAGCATCGGCCTCGATGAT--GATAGTC
*
75484311 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATAGTC
1 -AGTGTAAGACCATGTCTGGGACATAGCATCGGCCTCGATGATGATAGTC
* * * *
75484361 AGTGTAAGACCATGTTTGGGACACTA-CATCAGCAC-GGAT-ATG-TGAGAGC
1 AGTGTAAGACCATGTCTGGGACA-TAGCATCGGC-CTCGATGATGAT-AG-TC
* *
75484410 TAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGATGATGATAGTC
1 -AGTGTAAGACCATGTCTGGGACATAGCATCGGCCTCGATGATGATAGTC
*
75484460 AGTGTAAGACCATGTCTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATAGCAT
75484489 AGGCACCTTA
Statistics
Matches: 373, Mismatches: 55, Indels: 69
0.75 0.11 0.14
Matches are distributed among these distances:
44 11 0.03
45 17 0.05
46 66 0.18
47 27 0.07
48 30 0.08
49 105 0.28
50 105 0.28
51 10 0.03
52 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATAGCATCGGCCTCGATGATGATAGTC
Found at i:75484341 original size:99 final size:99
Alignment explanation
Indices: 75483979--75484494 Score: 496
Period size: 99 Copynumber: 5.4 Consensus size: 99
75483969 TTCTTGAGCT
* * *
75483979 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAC--ATTAT--GAGAGCCAGTGTAAGACCAT
1 AGTGTAAGACCATGTCTGGGACATCGCATC-GGCACGGA-TATGCGAAAGCTAGTGTAAGACCAT
* * * * *
75484038 GTTTGGGACATGGCATCGGCATTGA-GACGAGT-GCC
64 GTCTGGGACATGGCATCGGCCTCGATGATGA-TAGTC
* * * * * * *
75484073 AGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCTCGG-GA--CGTAAGCCAGTATAAGA-TATG
1 AGTGTAAGACCATGTCTGGGACATCGCATCGG-CACGGATATGCGAAAGCTAGTGTAAGACCATG
*
75484132 TCTGGGACAT-GCAACGG-CTACGA-GATG-T-GTC
65 TCTGGGACATGGCATCGGCCT-CGATGATGATAGTC
** * * * * * *
75484163 AGTACAAGACCATGTCTAGGACATGGCATCAGTACGGATATGCGAGAGCTAGTGTAAGATCATGT
1 AGTGTAAGACCATGTCTGGGACATCGCATCGGCACGGATATGCGAAAGCTAGTGTAAGACCATGT
*** * *
75484228 CTACAACATAGCATCAGCCTCGATGATGATAGTC
66 CTGGGACATGGCATCGGCCTCGATGATGATAGTC
*
75484262 AGTGTAAGACCATGTCTGGGACATCGCATCGGCATGGATATGCGAAAGCTAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATCGCATCGGCACGGATATGCGAAAGCTAGTGTAAGACCATGT
75484327 CTGGGACATGGCATCGGCCTCGATGATGATAGTC
66 CTGGGACATGGCATCGGCCTCGATGATGATAGTC
* * * * *
75484361 AGTGTAAGACCATGTTTGGGACA-CTACATCAGCACGGATATGTGAGAGCTAGTGTAAGACCATG
1 AGTGTAAGACCATGTCTGGGACATC-GCATCGGCACGGATATGCGAAAGCTAGTGTAAGACCATG
*
75484425 TCTGGGACATGGCATTGGCCTCGATGATGATAGTC
65 TCTGGGACATGGCATCGGCCTCGATGATGATAGTC
* *
75484460 AGTGTAAGACCATGTCTGGGACATGGCATAGGCAC
1 AGTGTAAGACCATGTCTGGGACATCGCATCGGCAC
75484495 CTTACCCGCG
Statistics
Matches: 346, Mismatches: 58, Indels: 31
0.80 0.13 0.07
Matches are distributed among these distances:
90 10 0.03
91 17 0.05
92 17 0.05
93 13 0.04
94 56 0.16
95 10 0.03
96 8 0.02
97 6 0.02
98 2 0.01
99 207 0.60
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (99 bp):
AGTGTAAGACCATGTCTGGGACATCGCATCGGCACGGATATGCGAAAGCTAGTGTAAGACCATGT
CTGGGACATGGCATCGGCCTCGATGATGATAGTC
Found at i:75492028 original size:22 final size:22
Alignment explanation
Indices: 75492003--75492065 Score: 90
Period size: 22 Copynumber: 2.9 Consensus size: 22
75491993 TGGTTATAAA
*
75492003 CCATAATTAGGATGGCACAGAG
1 CCATAATCAGGATGGCACAGAG
** *
75492025 CCATAATCAGGATGATATAGAG
1 CCATAATCAGGATGGCACAGAG
75492047 CCATAATCAGGATGGCACA
1 CCATAATCAGGATGGCACA
75492066 AAGCTATCGG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.19
Consensus pattern (22 bp):
CCATAATCAGGATGGCACAGAG
Found at i:75492798 original size:27 final size:26
Alignment explanation
Indices: 75492561--75492805 Score: 217
Period size: 27 Copynumber: 9.1 Consensus size: 26
75492551 TGCCCTACAG
* * *
75492561 GGGTATTTCGATAATTTTACACTACAA
1 GGGTATTTCGGTAATTTTACA-AACGA
* * * *
75492588 GGGTATTTTGGTAATTGTACACTACAA
1 GGGTATTTCGGTAATTTTACA-AACGA
* * *
75492615 GGGTATTTTC-GTAATTGTACATTACAA
1 GGGTA-TTTCGGTAATTTTACA-AACGA
75492642 GGGTATTTCGGTAATTTTACAAACTGA
1 GGGTATTTCGGTAATTTTACAAAC-GA
* * *
75492669 GGGTATTTTGGTAATTTTTCAAACTGG
1 GGGTATTTCGGTAATTTTACAAAC-GA
75492696 GGGTATTTCGGTAATTTTACAAACTG-
1 GGGTATTTCGGTAATTTTACAAAC-GA
75492722 GGAGTATTTCGGTAATTTTACAAAC-A
1 GG-GTATTTCGGTAATTTTACAAACGA
* *
75492748 GTAGGTATTTCGATAATTTTACAATTCGA
1 G--GGTATTTCGGTAATTTTACAA-ACGA
*
75492777 GGGTATTTTGGTAATTTTACAAACCGA
1 GGGTATTTCGGTAATTTTACAAA-CGA
75492804 GG
1 GG
75492806 TCTTAACGAC
Statistics
Matches: 190, Mismatches: 18, Indels: 20
0.83 0.08 0.09
Matches are distributed among these distances:
26 9 0.05
27 174 0.92
28 5 0.03
29 2 0.01
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.38
Consensus pattern (26 bp):
GGGTATTTCGGTAATTTTACAAACGA
Found at i:75493717 original size:10 final size:10
Alignment explanation
Indices: 75493702--75493734 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
75493692 CTGATTGTCT
75493702 AACCCAAAGG
1 AACCCAAAGG
75493712 AACCCAAAGG
1 AACCCAAAGG
75493722 AACCCAAAGG
1 AACCCAAAGG
75493732 AAC
1 AAC
75493735 TAATAGTACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.52, C:0.30, G:0.18, T:0.00
Consensus pattern (10 bp):
AACCCAAAGG
Found at i:75501967 original size:18 final size:17
Alignment explanation
Indices: 75501944--75501977 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
75501934 GTTTACCTAT
75501944 TATTATTATTCGTTTATC
1 TATTATTATT-GTTTATC
75501962 TATTATTATTGTTTAT
1 TATTATTATTGTTTAT
75501978 ATTACAGGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.65
Consensus pattern (17 bp):
TATTATTATTGTTTATC
Found at i:75501980 original size:15 final size:17
Alignment explanation
Indices: 75501944--75501981 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
75501934 GTTTACCTAT
75501944 TATTATTATTCGTTTATC
1 TATTATTATTCGTTTA-C
75501962 TATTATTATT-GTTTA-
1 TATTATTATTCGTTTAC
75501977 TATTA
1 TATTA
75501982 CAGGCTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 5 0.25
17 5 0.25
18 10 0.50
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.63
Consensus pattern (17 bp):
TATTATTATTCGTTTAC
Found at i:75511638 original size:37 final size:37
Alignment explanation
Indices: 75511579--75511650 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
75511569 AGCTCAGATG
*
75511579 AAATCTCCACACGAAGTTATCGGGTATTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTATTACCCGGACA
* *
75511616 AAATCTCCACACGCAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTATTACCCGGA
75511651 ATATATTTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTATTACCCGGACA
Found at i:75511920 original size:48 final size:48
Alignment explanation
Indices: 75511796--75512078 Score: 417
Period size: 48 Copynumber: 5.8 Consensus size: 48
75511786 GCACATCGCC
* * *
75511796 TACATATTTCACACTAGCCATTCGGTTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTC--A
* *
75511846 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCAGCTTTACCACATATACATATCTCA
*
75511894 TACATATTTCACATTAGCCATTCAGCTTTACCACTTATACATATCTCATA
1 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTC--A
* *
75511944 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCAGCTTTACCACATATACATATCTCA
75511992 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCA
*
75512040 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCAGCTTTACCACATATA
75512079 TGCATGTTCA
Statistics
Matches: 213, Mismatches: 14, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
48 126 0.59
49 4 0.02
50 83 0.39
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCA
Found at i:75511945 original size:98 final size:98
Alignment explanation
Indices: 75511782--75512077 Score: 481
Period size: 98 Copynumber: 3.0 Consensus size: 98
75511772 CGGCCACAAT
* * * * * *
75511782 ATATGCACATCGCCTACATATTTCACACTAGCCATTCGGTTTTACCACATATACATATCTCATAT
1 ATATGCATATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATAT
75511847 ATATATTTCACATTGACCATTCAGCTTTACCAC
66 ATATATTTCACATTGACCATTCAGCTTTACCAC
*
75511880 ATATGCATATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACTTATACATATCTCATAT
1 ATATGCATATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATAT
75511945 ATATATTTCACATTGACCATTCAGCTTTACCAC
66 ATATATTTCACATTGACCATTCAGCTTTACCAC
75511978 ATATGCATATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTC--AT
1 ATATGCATATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATAT
* *
75512041 ACATATTTCACATT-AGCCATTCGGCTTTACCAC
66 ATATATTTCACATTGA-CCATTCAGCTTTACCAC
75512074 ATAT
1 ATAT
75512078 ATGCATGTTC
Statistics
Matches: 187, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
95 1 0.01
96 35 0.19
98 151 0.81
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (98 bp):
ATATGCATATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATAT
ATATATTTCACATTGACCATTCAGCTTTACCAC
Found at i:75512111 original size:47 final size:47
Alignment explanation
Indices: 75512048--75512335 Score: 450
Period size: 47 Copynumber: 6.1 Consensus size: 47
75512038 CATACATATT
* * * *
75512048 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
75512095 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
75512142 TCACATTGGCCATTCGGCCTTATCAGATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
75512189 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCGCATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
75512236 TCACATTGGCCATTCGACCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
75512283 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
75512330 TCACAT
1 TCACAT
75512336 AAAATCCTAA
Statistics
Matches: 221, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 221 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:75512213 original size:22 final size:22
Alignment explanation
Indices: 75512188--75512306 Score: 66
Period size: 22 Copynumber: 5.1 Consensus size: 22
75512178 GTTCACATTC
75512188 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
75512210 ATCACATATATG-CATGTTC-GCATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
*
75512234 CATCACATTGGCCATTCGACCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
75512257 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
75512281 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
75512304 ATC
1 ATC
75512307 TCATATATAC
Statistics
Matches: 73, Mismatches: 10, Indels: 28
0.66 0.09 0.25
Matches are distributed among these distances:
22 23 0.32
23 14 0.19
24 16 0.22
25 20 0.27
ACGTcount: A:0.24, C:0.29, G:0.13, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:75512238 original size:25 final size:25
Alignment explanation
Indices: 75512163--75512288 Score: 83
Period size: 25 Copynumber: 5.3 Consensus size: 25
75512153 ATTCGGCCTT
* *
75512163 ATCAGATATATGCATGTTCACATTC
1 ATCACATATATGCATGTTCGCATTC
* *
75512188 ATCACAT-T-GGCCA--TTCGGCCTT-
1 ATCACATATATG-CATGTTC-GCATTC
75512210 ATCACATATATGCATGTTCGCATTC
1 ATCACATATATGCATGTTCGCATTC
* *
75512235 ATCACAT-T-GGCCA--TTCGACCTT-
1 ATCACATATATG-CATGTTCG-CATTC
*
75512257 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCATGTTCGCATTC
75512282 ATCACAT
1 ATCACAT
75512289 TGGCCATTCG
Statistics
Matches: 76, Mismatches: 11, Indels: 28
0.66 0.10 0.24
Matches are distributed among these distances:
22 21 0.28
23 14 0.18
24 15 0.20
25 26 0.34
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCATGTTCGCATTC
Found at i:75517686 original size:40 final size:40
Alignment explanation
Indices: 75517559--75517688 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
75517549 ATGCTGGAAA
* *
75517559 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
75517599 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
75517639 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
75517679 TTATATCCGG
1 TTATATCCGG
75517689 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:75526605 original size:28 final size:28
Alignment explanation
Indices: 75526540--75526640 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
75526530 ATAGTGAATC
*
75526540 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
75526569 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
75526597 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
75526627 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75526641 CATACCCTTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:75526689 original size:29 final size:29
Alignment explanation
Indices: 75526657--75526729 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
75526647 CTTCGAGCTC
*
75526657 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
75526686 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
75526715 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
75526730 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:75528745 original size:40 final size:40
Alignment explanation
Indices: 75528618--75528747 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
75528608 AGGCTGGAAA
* * *
75528618 TTATATCCGGGTTAAGACACGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
75528658 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
75528698 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
75528738 TTATATCCGG
1 TTATATCCGG
75528748 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:75537793 original size:18 final size:18
Alignment explanation
Indices: 75537770--75537805 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
75537760 AGGTTAAATG
75537770 TGAAAAATTAGAATTTAA
1 TGAAAAATTAGAATTTAA
75537788 TGAAAAATTAGAATTTAA
1 TGAAAAATTAGAATTTAA
75537806 ATAAGTCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.11, T:0.33
Consensus pattern (18 bp):
TGAAAAATTAGAATTTAA
Found at i:75540607 original size:19 final size:19
Alignment explanation
Indices: 75540570--75540607 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
75540560 ACCTATCAGA
*
75540570 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
75540589 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
75540608 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:75543475 original size:27 final size:27
Alignment explanation
Indices: 75543391--75543476 Score: 75
Period size: 27 Copynumber: 3.2 Consensus size: 27
75543381 ATCGGTATAT
* * *
75543391 AGCCACGGGTAAATATGATTGACACAG
1 AGCCACAGGTAAATATGATTGGCACAA
* * * **
75543418 AGTCATCA-ATAAATATGATAGGCACTT
1 AGCCA-CAGGTAAATATGATTGGCACAA
*
75543445 AGCCACAGGTAAATACGATTGGCACAA
1 AGCCACAGGTAAATATGATTGGCACAA
75543472 AGCCA
1 AGCCA
75543477 TAATCAAGAT
Statistics
Matches: 44, Mismatches: 13, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
26 2 0.05
27 41 0.93
28 1 0.02
ACGTcount: A:0.40, C:0.20, G:0.21, T:0.20
Consensus pattern (27 bp):
AGCCACAGGTAAATATGATTGGCACAA
Found at i:75543878 original size:27 final size:26
Alignment explanation
Indices: 75543848--75544003 Score: 100
Period size: 27 Copynumber: 5.8 Consensus size: 26
75543838 TGCCCTACAG
*
75543848 GGGTATTTTGCTAATTTTACATTATAA
1 GGGTATTTTG-TAATTTTACACTATAA
** * * *
75543875 GGGTATATCGGTAACTGTACACTACAA
1 GGGTAT-TTTGTAATTTTACACTATAA
* *
75543902 GGGTATTTCGGTAATTATACACTATAA
1 GGGTATTT-TGTAATTTTACACTATAA
* * **
75543929 GGGTATTTTAGTAATTTAACA-AACTGG
1 GGGTATTTT-GTAATTTTACACTA-TAA
* *
75543956 GGGTATTTCTGTAATTTTACAATTTGAA
1 GGGTATTT-TGTAATTTTACACTAT-AA
75543984 -GGTATTTATGTAATTTTACA
1 GGGTATTT-TGTAATTTTACA
75544004 AACTAGGGGT
Statistics
Matches: 100, Mismatches: 22, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
26 2 0.02
27 95 0.95
28 3 0.03
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (26 bp):
GGGTATTTTGTAATTTTACACTATAA
Found at i:75543960 original size:54 final size:54
Alignment explanation
Indices: 75543902--75544030 Score: 156
Period size: 54 Copynumber: 2.4 Consensus size: 54
75543892 TACACTACAA
* * *
75543902 GGGTATTTCGGTAATTATACACTAT-AAGGGTATTT-TAGTAATTTAACAAACTGG
1 GGGTATTTCGGTAATTTTACAATATGAA-GGTATTTAT-GTAATTTAACAAACTAG
* * *
75543956 GGGTATTTCTGTAATTTTACAATTTGAAGGTATTTATGTAATTTTACAAACTAG
1 GGGTATTTCGGTAATTTTACAATATGAAGGTATTTATGTAATTTAACAAACTAG
*
75544010 GGGTA-TTCGATAATTTTACAA
1 GGGTATTTCGGTAATTTTACAA
75544031 ACCGGGAGTA
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
53 14 0.22
54 48 0.74
55 3 0.05
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (54 bp):
GGGTATTTCGGTAATTTTACAATATGAAGGTATTTATGTAATTTAACAAACTAG
Found at i:75544014 original size:27 final size:26
Alignment explanation
Indices: 75543929--75544119 Score: 124
Period size: 27 Copynumber: 7.2 Consensus size: 26
75543919 TACACTATAA
* *
75543929 GGGTATTTTAGTAATTTAACAAACTGG
1 GGGTATTTT-GTAATTTTACAAACTAG
* *
75543956 GGGTATTTCTGTAATTTTAC-AATTTG
1 GGGTATTT-TGTAATTTTACAAACTAG
*
75543982 AAGGTATTTATGTAATTTTACAAACTAG
1 -GGGTATTT-TGTAATTTTACAAACTAG
* *
75544010 GGGTA-TTCGATAATTTTACAAAC-CG
1 GGGTATTTTG-TAATTTTACAAACTAG
*
75544035 GGAGTATTTTGATAATTTTACAAAC-CG
1 GG-GTATTTTG-TAATTTTACAAACTAG
* * * *
75544062 AAGGTATTTTGGTAAATTTACAATC-CG
1 -GGGTATTTT-GTAATTTTACAAACTAG
*
75544089 AGGGTATTTCGATAATTTTACAAACT-G
1 -GGGTATTTTG-TAATTTTACAAACTAG
75544116 GGGT
1 GGGT
75544120 CTACACGACC
Statistics
Matches: 136, Mismatches: 18, Indels: 21
0.78 0.10 0.12
Matches are distributed among these distances:
25 4 0.03
26 27 0.20
27 98 0.72
28 7 0.05
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (26 bp):
GGGTATTTTGTAATTTTACAAACTAG
Found at i:75544030 original size:26 final size:26
Alignment explanation
Indices: 75543994--75544119 Score: 137
Period size: 27 Copynumber: 4.7 Consensus size: 26
75543984 GGTATTTATG
*
75543994 TAATTTTACAAACTAGGGGTA-TTCGA
1 TAATTTTACAAAC-CGGGGTATTTCGA
*
75544020 TAATTTTACAAACCGGGAGTATTTTGA
1 TAATTTTACAAACCGGG-GTATTTCGA
* * *
75544047 TAATTTTACAAACCGAAGGTATTTTGG
1 TAATTTTACAAACCG-GGGTATTTCGA
* *
75544074 TAAATTTACAATCCGAGGGTATTTCGA
1 TAATTTTACAAACCG-GGGTATTTCGA
*
75544101 TAATTTTACAAACTGGGGT
1 TAATTTTACAAACCGGGGT
75544120 CTACACGACC
Statistics
Matches: 85, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
25 3 0.04
26 20 0.24
27 61 0.72
28 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (26 bp):
TAATTTTACAAACCGGGGTATTTCGA
Found at i:75544051 original size:80 final size:81
Alignment explanation
Indices: 75543940--75544113 Score: 212
Period size: 80 Copynumber: 2.2 Consensus size: 81
75543930 GGTATTTTAG
* * * *** *
75543940 TAATTTAACAAACTGGGGGTATTTCTGTAATTTTACAATTTGAAGGTATTTAT-GTAATTTTACA
1 TAATTTTACAAACCGGGAGTATTTCTGTAATTTTACAAACCGAAGGTATTT-TGGTAAATTTACA
75544004 AACTAG-GGGTA-TTCGA
65 AAC-AGAGGGTATTTCGA
75544020 TAATTTTACAAACCGGGAGTATTT-TGATAATTTTACAAACCGAAGGTATTTTGGTAAATTTACA
1 TAATTTTACAAACCGGGAGTATTTCTG-TAATTTTACAAACCGAAGGTATTTTGGTAAATTTACA
* *
75544084 ATCCGAGGGTATTTCGA
65 AACAGAGGGTATTTCGA
75544101 TAATTTTACAAAC
1 TAATTTTACAAAC
75544114 TGGGGTCTAC
Statistics
Matches: 81, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
79 4 0.05
80 59 0.73
81 18 0.22
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (81 bp):
TAATTTTACAAACCGGGAGTATTTCTGTAATTTTACAAACCGAAGGTATTTTGGTAAATTTACAA
ACAGAGGGTATTTCGA
Found at i:75555908 original size:29 final size:29
Alignment explanation
Indices: 75555875--75555931 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
75555865 GTAAAATGGG
75555875 ATAGCTTCAGCTATCGACTACGAAAAGGA
1 ATAGCTTCAGCTATCGACTACGAAAAGGA
* * * *
75555904 ATAGCTTCGGCTATTGATTATGAAAAGG
1 ATAGCTTCAGCTATCGACTACGAAAAGG
75555932 GATGGTGATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (29 bp):
ATAGCTTCAGCTATCGACTACGAAAAGGA
Found at i:75555952 original size:29 final size:30
Alignment explanation
Indices: 75555920--75555995 Score: 100
Period size: 29 Copynumber: 2.6 Consensus size: 30
75555910 TCGGCTATTG
75555920 ATTATGAAAAGGGATGGTGATAACCATC-A
1 ATTATGAAAAGGGATGGTGATAACCATCGA
* * *
75555949 ATTATGGAAAGGGGTGGTGATGACCATCGA
1 ATTATGAAAAGGGATGGTGATAACCATCGA
* *
75555979 ACTATAAAAAGGGATGG
1 ATTATGAAAAGGGATGG
75555996 CTTCGGGTAT
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 25 0.64
30 14 0.36
ACGTcount: A:0.38, C:0.09, G:0.30, T:0.22
Consensus pattern (30 bp):
ATTATGAAAAGGGATGGTGATAACCATCGA
Found at i:75556017 original size:30 final size:28
Alignment explanation
Indices: 75555983--75556054 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
75555973 CATCGAACTA
*
75555983 TAAAAAGGGATGGCTTCGGGTATCAATCAT
1 TAAAAAGGGATGGCTTCGGCTATCAA--AT
75556013 T-AAAAGGGATGGCTTCGGCTATCAAAT
1 TAAAAAGGGATGGCTTCGGCTATCAAAT
75556040 TATGAAAAGGGATGG
1 TA--AAAAGGGATGG
75556055 TAATGACCAT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
27 3 0.08
29 23 0.61
30 12 0.32
ACGTcount: A:0.35, C:0.11, G:0.29, T:0.25
Consensus pattern (28 bp):
TAAAAAGGGATGGCTTCGGCTATCAAAT
Found at i:75556026 original size:29 final size:30
Alignment explanation
Indices: 75555985--75556174 Score: 113
Period size: 30 Copynumber: 6.3 Consensus size: 30
75555975 TCGAACTATA
* *
75555985 AAAAGGGATGGCTTCGGGTATC-AATCATT
1 AAAAGGGATGGCTTCGGCTATCAAATCATG
*
75556014 AAAAGGGATGGCTTCGGCTATCAAATTATG
1 AAAAGGGATGGCTTCGGCTATCAAATCATG
* * ** *
75556044 AAAAGGGATGG-TAAT-GACCATTGAACCATG
1 AAAAGGGATGGCT--TCGGCTATCAAATCATG
* * * * *
75556074 AAAAGGGAT-GATGACGACCATCAAATTATG
1 AAAAGGGATGGCT-TCGGCTATCAAATCATG
* ** *
75556104 AAAAGGGATAGCTTCTACTATCAAATTATG
1 AAAAGGGATGGCTTCGGCTATCAAATCATG
* *
75556134 AAAAAGGGATAG-TCTCGGCTATCGAAT-ATAG
1 -AAAAGGGATGGCT-TCGGCTATCAAATCAT-G
75556165 AAAAGGGATG
1 AAAAGGGATG
75556175 TGACAGCCCT
Statistics
Matches: 129, Mismatches: 23, Indels: 17
0.76 0.14 0.10
Matches are distributed among these distances:
29 23 0.18
30 81 0.63
31 25 0.19
ACGTcount: A:0.38, C:0.13, G:0.25, T:0.24
Consensus pattern (30 bp):
AAAAGGGATGGCTTCGGCTATCAAATCATG
Found at i:75556503 original size:13 final size:13
Alignment explanation
Indices: 75556480--75556513 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
75556470 AAACATATTA
75556480 TAAACATTTTGTGT
1 TAAA-ATTTTGTGT
75556494 TAAAATTTTGTGT
1 TAAAATTTTGTGT
75556507 TAGAAAT
1 TA-AAAT
75556514 AATAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (13 bp):
TAAAATTTTGTGT
Found at i:75557863 original size:40 final size:40
Alignment explanation
Indices: 75557818--75558015 Score: 319
Period size: 40 Copynumber: 5.0 Consensus size: 40
75557808 CTAAGATCCA
*
75557818 AAGGCATTTGTGCTGGTGACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCG
*
75557858 AAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCG
75557898 AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCG
* *
75557938 AAGGCATTTGTGCTAGTGATTATATTCGGGCTAAGTCCCG
1 AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCG
* *
75557978 AAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCC
1 AAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCC
75558016 AATGGTACTT
Statistics
Matches: 148, Mismatches: 9, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
39 10 0.07
40 136 0.92
41 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (40 bp):
AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCG
Found at i:75561884 original size:29 final size:29
Alignment explanation
Indices: 75561851--75561981 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
75561841 TGACGAGATC
*
75561851 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
75561880 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
75561909 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
75561938 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
75561967 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
75561982 AGCTCGGAGG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:75568922 original size:40 final size:40
Alignment explanation
Indices: 75568877--75569043 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
75568867 CGGAATATAA
*
75568877 CCGGATTTAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
75568917 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
75568957 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * ** *
75568997 CCGGATATAATTTCCAGCATAGTTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
75569036 CCGGATAT
1 CCGGATAT
75569044 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:75572363 original size:40 final size:40
Alignment explanation
Indices: 75572315--75572545 Score: 376
Period size: 40 Copynumber: 5.8 Consensus size: 40
75572305 TAACTAAGAT
75572315 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
75572355 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
75572395 CC-AAGGCATTTGTGCTAGTTACTATATCCGAGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
75572434 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
75572474 CCGAAGGCATTTGTGCTAGTGATTATATTCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
75572514 CCGAAGGCATTTGTGCGAGTTG-CTATATCCGG
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGG
75572546 CTTAATGCCG
Statistics
Matches: 180, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 38 0.21
40 140 0.78
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:75572449 original size:79 final size:79
Alignment explanation
Indices: 75572308--75572545 Score: 377
Period size: 79 Copynumber: 3.0 Consensus size: 79
75572298 GATAACCTAA
*
75572308 CTAAGATCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA
1 CTAAG-TCCCAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA
75572373 GTTACTATATCCGGG
65 GTTACTATATCCGGG
* *
75572388 CTAAGTCCCAAGGCATTTGTGCTAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTTGTGCTAG
1 CTAAGTCCCAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG
* *
75572453 TGATTATATCCGGG
66 TTACTATATCCGGG
* * *
75572467 CTAAGTCCCGAAGGCATTTGTGCTAGTGATTATATTCGGGCTAAGTCCCGAAGGCATTTGTGCGA
1 CTAAGTCCC-AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA
*
75572532 GTTGCTATATCCGG
65 GTTACTATATCCGG
75572546 CTTAATGCCG
Statistics
Matches: 144, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
79 78 0.54
80 66 0.46
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (79 bp):
CTAAGTCCCAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG
TTACTATATCCGGG
Found at i:75572559 original size:119 final size:119
Alignment explanation
Indices: 75572315--75572544 Score: 397
Period size: 119 Copynumber: 1.9 Consensus size: 119
75572305 TAACTAAGAT
*
75572315 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTA
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA
*
75572380 TATCCGGGCTAAGTCCCAAGGCATTTGTGCTAGTTACTATATCCGAGCTAAGTC
66 TATCCGGGCTAAGTCCCAAGGCATTTGTGCGAGTTACTATATCCGAGCTAAGTC
* *
75572434 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTA
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA
* *
75572499 TATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCG
66 TATCCGGGCTAAGTCCC-AAGGCATTTGTGCGAGTTACTATATCCG
75572545 GCTTAATGCC
Statistics
Matches: 104, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
119 78 0.75
120 26 0.25
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (119 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA
TATCCGGGCTAAGTCCCAAGGCATTTGTGCGAGTTACTATATCCGAGCTAAGTC
Found at i:75576843 original size:30 final size:30
Alignment explanation
Indices: 75576807--75576907 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
75576797 GACAAGATTG
* * *
75576807 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
75576837 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
75576865 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
75576894 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75576908 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:75576919 original size:29 final size:28
Alignment explanation
Indices: 75576836--75576911 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
75576826 AAAATTGTAC
* *
75576836 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
75576864 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
75576893 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
75576912 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:75584757 original size:29 final size:29
Alignment explanation
Indices: 75584686--75584787 Score: 98
Period size: 29 Copynumber: 3.5 Consensus size: 29
75584676 GACAAGATTG
* * * * *
75584686 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
* ** *
75584716 GCACTAAGTGTGCGAGTTTG-ATCTCTATA
1 GCACTAAGTGTGCGAG-CTGAAAATATATA
75584745 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
75584774 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75584788 GATTCACTAT
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
28 2 0.03
29 40 0.67
30 16 0.27
31 2 0.03
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.28
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:75592559 original size:30 final size:30
Alignment explanation
Indices: 75592523--75592623 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
75592513 GACAAGATTG
* * *
75592523 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
75592553 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
75592581 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
75592610 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75592624 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:75592635 original size:29 final size:28
Alignment explanation
Indices: 75592552--75592627 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
75592542 AAAATTGTAC
* *
75592552 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
75592580 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
75592609 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
75592628 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:75601125 original size:28 final size:28
Alignment explanation
Indices: 75601056--75601156 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
75601046 GACAAGATTG
* * * *
75601056 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
75601086 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
75601114 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
75601143 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75601157 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:75607708 original size:28 final size:28
Alignment explanation
Indices: 75607672--75607737 Score: 105
Period size: 28 Copynumber: 2.4 Consensus size: 28
75607662 TCAAATATGT
* *
75607672 CACTCAGTGTACGAAATATTGAGAATGG
1 CACTTAGTGTACGAAATATTGAGAATGA
*
75607700 CACTTAGTGTACGAGATATTGAGAATGA
1 CACTTAGTGTACGAAATATTGAGAATGA
75607728 CACTTAGTGT
1 CACTTAGTGT
75607738 GAAAAATATC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (28 bp):
CACTTAGTGTACGAAATATTGAGAATGA
Found at i:75607746 original size:28 final size:28
Alignment explanation
Indices: 75607672--75607746 Score: 89
Period size: 28 Copynumber: 2.7 Consensus size: 28
75607662 TCAAATATGT
* * *
75607672 CACTCAGTGTACGAAATATTGAGAATGG
1 CACTTAGTGTACAAAATATTGAGAATGA
* *
75607700 CACTTAGTGTACGAGATATTGAGAATGA
1 CACTTAGTGTACAAAATATTGAGAATGA
75607728 CACTTAGTGTGA-AAAATAT
1 CACTTAGTGT-ACAAAATAT
75607747 CGAATGATTC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
28 40 0.98
29 1 0.02
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.28
Consensus pattern (28 bp):
CACTTAGTGTACAAAATATTGAGAATGA
Found at i:75609527 original size:46 final size:46
Alignment explanation
Indices: 75609472--75609652 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
75609462 TAGGATGGTT
75609472 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
75609518 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
75609564 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
75609611 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75609653 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:75609633 original size:93 final size:93
Alignment explanation
Indices: 75609474--75609644 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
75609464 GGATGGTTGA
* *
75609474 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75609539 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
75609567 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75609632 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
75609645 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75612618 original size:15 final size:15
Alignment explanation
Indices: 75612598--75612666 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
75612588 GTATCTTGGG
75612598 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
75612613 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
75612628 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
75612643 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
75612658 TTTCTTTAT
1 TTTCTTTAT
75612667 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:75612667 original size:30 final size:30
Alignment explanation
Indices: 75612589--75612676 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
75612579 CATAGTATCG
* * * *
75612589 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
75612619 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
75612649 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
75612677 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:75615096 original size:46 final size:46
Alignment explanation
Indices: 75615041--75615221 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
75615031 TAGGATGGTT
75615041 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
75615087 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
75615133 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
75615180 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75615222 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:75615202 original size:93 final size:93
Alignment explanation
Indices: 75615043--75615213 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
75615033 GGATGGTTGA
* *
75615043 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75615108 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
75615136 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75615201 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
75615214 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75622800 original size:28 final size:28
Alignment explanation
Indices: 75622734--75622815 Score: 105
Period size: 28 Copynumber: 3.0 Consensus size: 28
75622724 TCAAATATGG
* *
75622734 CACTTAGTGTACGAAATATTGAGAATGG
1 CACTTAGTGTGCGAAATATTGAGAATGA
*
75622762 CACTTAGTGTGCGAGATATTGAGAATGA
1 CACTTAGTGTGCGAAATATTGAGAATGA
* *
75622790 CACTTAATGTGCAAAATA-T-AGAATGA
1 CACTTAGTGTGCGAAATATTGAGAATGA
75622816 TTCAAAGGGC
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
26 7 0.15
27 1 0.02
28 40 0.83
ACGTcount: A:0.38, C:0.11, G:0.23, T:0.28
Consensus pattern (28 bp):
CACTTAGTGTGCGAAATATTGAGAATGA
Found at i:75649106 original size:29 final size:29
Alignment explanation
Indices: 75649021--75649173 Score: 140
Period size: 29 Copynumber: 5.4 Consensus size: 29
75649011 GTGAGCATGG
*
75649021 ATAT-AATGT-GATTTGGGCCGGATGGGCC
1 ATATGAATGTAGA-TTGGGCCTGATGGGCC
* *
75649049 ATATAAATG-AGATTGGGCCTAATGGGCC
1 ATATGAATGTAGATTGGGCCTGATGGGCC
*
75649077 ATATGAATGTCA-ATTTGGCCTGATGGGCC
1 ATATGAATGT-AGATTGGGCCTGATGGGCC
* * *
75649106 ATATGAACGT-GAATTGGGTCGGATGGGCC
1 ATATGAATGTAG-ATTGGGCCTGATGGGCC
*
75649135 ATATAAATG-AGATTGGGCCT-AGTGGGCC
1 ATATGAATGTAGATTGGGCCTGA-TGGGCC
*
75649163 ATATGCATGTA
1 ATATGAATGTA
75649174 TATAGGGGTT
Statistics
Matches: 101, Mismatches: 15, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
27 1 0.01
28 46 0.46
29 53 0.52
30 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.27
Consensus pattern (29 bp):
ATATGAATGTAGATTGGGCCTGATGGGCC
Found at i:75658364 original size:79 final size:79
Alignment explanation
Indices: 75658209--75658431 Score: 290
Period size: 79 Copynumber: 2.8 Consensus size: 79
75658199 TCGAATGATG
* * * *
75658209 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-ATCCGGGCTAAGACCCGAAGGCATT
*
75658273 TGTGCGAGTTACTAAA
64 GGTGCGAGTTACTAAA
*
75658289 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATCCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT-CCGGGCTAAGACCCGAAGGCATT
75658352 GGTGCGAGTTACTAAA
64 GGTGCGAGTTACTAAA
* * * *
75658368 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATCCGGGCTAAGACCCGAAGGCATT
75658432 TGATCGAGTA
Statistics
Matches: 127, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
78 1 0.01
79 71 0.56
80 47 0.37
81 8 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATCCGGGCTAAGACCCGAAGGCATTGG
TGCGAGTTACTAAA
Found at i:75658440 original size:119 final size:120
Alignment explanation
Indices: 75658210--75658433 Score: 305
Period size: 119 Copynumber: 1.9 Consensus size: 120
75658200 CGAATGATGT
* *
75658210 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
75658275 TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATC
66 TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATC
* * **
75658330 CCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
* *
75658392 TGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 TGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
75658434 ATCGAGTAGC
Statistics
Matches: 92, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
118 2 0.02
119 72 0.78
120 18 0.20
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATC
Found at i:75658447 original size:40 final size:41
Alignment explanation
Indices: 75658209--75658433 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 41
75658199 TCGAATGATG
* *
75658209 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
*
75658249 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
75658289 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTAC--TAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
75658328 TCCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 T-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
75658368 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
75658409 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75658434 ATCGAGTAGC
Statistics
Matches: 166, Mismatches: 9, Indels: 20
0.85 0.05 0.10
Matches are distributed among these distances:
39 34 0.20
40 122 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:75664535 original size:28 final size:28
Alignment explanation
Indices: 75664503--75664601 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
75664493 TGCATAAGCC
*
75664503 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
75664531 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
75664559 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
75664588 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75664602 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:75672206 original size:28 final size:28
Alignment explanation
Indices: 75672174--75672272 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
75672164 GCCATAAGCC
*
75672174 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
75672202 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
75672230 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
75672259 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75672273 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:75675366 original size:40 final size:39
Alignment explanation
Indices: 75675322--75675467 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 39
75675312 TAATCCACAA
* * *** *
75675322 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
75675362 GCACAAATGCCTTCGGGTCGTAGCCCGGATATAACAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
75675402 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* *
75675442 GCATAAATGCCTTCGGGACTTAGCCC
1 GCA-CAATGCCTTCGGGTCTTAGCCC
75675468 AGGTATCATT
Statistics
Matches: 91, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
40 88 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:75680279 original size:40 final size:40
Alignment explanation
Indices: 75680052--75680272 Score: 249
Period size: 40 Copynumber: 5.5 Consensus size: 40
75680042 ATGATGTCCG
* * *
75680052 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCA
75680091 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCA
1 GG-CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCA
* *
75680132 GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AATCCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAAT-CCA
*
75680172 GGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCA
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCA
* *
75680211 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCA
* *
75680251 GGCTACGTCTCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
75680273 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 14, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
39 36 0.23
40 112 0.70
41 11 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCA
Found at i:75680279 original size:119 final size:120
Alignment explanation
Indices: 75680049--75680279 Score: 285
Period size: 119 Copynumber: 1.9 Consensus size: 120
75680039 CGAATGATGT
* *
75680049 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
**
75680114 TGCGAGTTACTAAATCCAGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATC
66 TGCGAGTTACTAAATCCAGACTAAGATCCGAAGGCATTTGAACGAGTTACTAATC
* * *
75680169 CCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCAGG-TTAAG-TCCCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCC-GGACTAAGAT-CCGAAGGCAT
* * *
75680230 TTGTGCGAGTTACTATAA-CCGGGCTACG-TCTCGAAGGCATTTGAACGAGT
63 TTGTGCGAGTTACTA-AATCCAGACTAAGATC-CGAAGGCATTTGAACGAGT
75680280 AGCTATATCC
Statistics
Matches: 96, Mismatches: 10, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
118 3 0.03
119 73 0.76
120 20 0.21
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTAAATCCAGACTAAGATCCGAAGGCATTTGAACGAGTTACTAATC
Done.