Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 264 of 444
Found at i:75680295 original size:79 final size:79
Alignment explanation
Indices: 75680055--75680272 Score: 280
Period size: 79 Copynumber: 2.7 Consensus size: 79
75680045 ATGTCCGGGC
* * * *
75680055 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCGAAGGCATTTGTGCGA
**
75680119 GTTACTAAATCCAGAC
64 GTTACTAAATCCAGGT
* * *
75680135 TAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATCCCGGGCTAAGCCCGAAGGCATTGGTGCGA
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACCGGGCTAAGTCCGAAGGCATTTGTGCGA
75680198 GTTACTAAATCCAGGT
64 GTTACTAAATCCAGGT
*
75680214 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTACGTCTCGAAGGCATTTG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTC-CGAAGGCATTTG
75680273 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 12, Indels: 12
0.83 0.08 0.08
Matches are distributed among these distances:
78 1 0.01
79 71 0.59
80 40 0.33
81 8 0.07
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCGAAGGCATTTGTGCGAGT
TACTAAATCCAGGT
Found at i:75680303 original size:79 final size:79
Alignment explanation
Indices: 75680061--75680305 Score: 223
Period size: 79 Copynumber: 3.1 Consensus size: 79
75680051 GGGCTAAGTC
* * * * * **
75680061 CCGAAGGC-TTTGTGCTAAGTGACT-ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTAC
1 CCGAAGGCATTTGTGC-GAGTTACTAATA-CCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTAC
**
75680124 TAAATCCAGACTAAGA-T
63 TAAATCCAGGTTAA-ATT
* **
75680141 CCGAAGGCATTTGTGCGAGTTACTAATCCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
* *
75680206 ATCCAGGTTAAGTC
66 ATCCAGGTTAAATT
* * *
75680220 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTACGTCTCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
75680283 TATATCC-GGTTAAATT
63 TAAATCCAGGTTAAATT
75680299 CCGAAGG
1 CCGAAGG
75680306 TACCTGATTC
Statistics
Matches: 140, Mismatches: 19, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
78 2 0.01
79 83 0.59
80 46 0.33
81 9 0.06
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCAGGTTAAATT
Found at i:75682103 original size:29 final size:29
Alignment explanation
Indices: 75682024--75682170 Score: 120
Period size: 29 Copynumber: 5.2 Consensus size: 29
75682014 GCATGGGTAT
* * * **
75682024 AATGTGATTTGGGCCAGATGGACCATAAA
1 AATGTGAATTGGGCCTGATGGGCCATATG
* * * *
75682053 AATGAG-ATTAGGCCTAACGGGCCATATG
1 AATGTGAATTGGGCCTGATGGGCCATATG
*
75682081 AATGTGAATTTGGCCTGATGGGCCATATG
1 AATGTGAATTGGGCCTGATGGGCCATATG
* * * *
75682110 AACGTGAATTGGGTCGGATGGGCCATATA
1 AATGTGAATTGGGCCTGATGGGCCATATG
* *
75682139 AATGAG-ATTGGGCTTG-TGGGCCATATG
1 AATGTGAATTGGGCCTGATGGGCCATATG
*
75682166 CATGT
1 AATGT
75682171 ATGTAGGGTT
Statistics
Matches: 91, Mismatches: 26, Indels: 4
0.75 0.21 0.03
Matches are distributed among these distances:
27 13 0.14
28 26 0.29
29 52 0.57
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (29 bp):
AATGTGAATTGGGCCTGATGGGCCATATG
Found at i:75687564 original size:20 final size:20
Alignment explanation
Indices: 75687527--75687564 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
75687517 AATATAATGT
*
75687527 AAATAATAGAAATTAAATAA
1 AAATAATAGAAATGAAATAA
75687547 AAATAATTAG-AATGAAAT
1 AAATAA-TAGAAATGAAAT
75687565 TAAATCTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (20 bp):
AAATAATAGAAATGAAATAA
Found at i:75687575 original size:25 final size:28
Alignment explanation
Indices: 75687508--75687576 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 28
75687498 ATAAAGGGGG
*
75687508 ATTAAATCTAATATAATGTAAATAATAGAA
1 ATTAAATCTAA-ATAATGT-AAGAATAGAA
**
75687538 ATTAAATAAAAATAAT-T-AGAAT-GAA
1 ATTAAATCTAAATAATGTAAGAATAGAA
75687563 ATTAAATCTAAATA
1 ATTAAATCTAAATA
75687577 TATCAAGTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
25 15 0.44
26 4 0.12
28 1 0.03
29 5 0.15
30 9 0.26
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.32
Consensus pattern (28 bp):
ATTAAATCTAAATAATGTAAGAATAGAA
Found at i:75689482 original size:17 final size:17
Alignment explanation
Indices: 75689462--75689498 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
75689452 GAAGAAATTT
*
75689462 AGAAGAGGAAGAAGAAA
1 AGAACAGGAAGAAGAAA
*
75689479 AGAACAGGAGGAAGAAA
1 AGAACAGGAAGAAGAAA
75689496 AGA
1 AGA
75689499 GTAACAGAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.35, T:0.00
Consensus pattern (17 bp):
AGAACAGGAAGAAGAAA
Found at i:75689504 original size:20 final size:18
Alignment explanation
Indices: 75689465--75689519 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
75689455 GAAATTTAGA
*
75689465 AGAGGAAGAAGAAAAGAAC
1 AGAGGAAGAA-AAGAGAAC
75689484 AGGAGGAAGAAAAGAGTAAC
1 A-GAGGAAGAAAAGAG-AAC
75689504 AGA-GAGAGAAAAGAGA
1 AGAGGA-AGAAAAGAGA
75689520 GAGAAAGAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
18 3 0.09
19 16 0.50
20 13 0.41
ACGTcount: A:0.60, C:0.04, G:0.35, T:0.02
Consensus pattern (18 bp):
AGAGGAAGAAAAGAGAAC
Found at i:75689536 original size:12 final size:11
Alignment explanation
Indices: 75689504--75689538 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
75689494 AAAGAGTAAC
75689504 AGAGAGAGAAA
1 AGAGAGAGAAA
75689515 AGAGAGAGAAA
1 AGAGAGAGAAA
*
75689526 GAGATAGAGAAA
1 -AGAGAGAGAAA
75689538 A
1 A
75689539 TAGTACTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.63, C:0.00, G:0.34, T:0.03
Consensus pattern (11 bp):
AGAGAGAGAAA
Found at i:75693284 original size:29 final size:28
Alignment explanation
Indices: 75693249--75693311 Score: 99
Period size: 29 Copynumber: 2.2 Consensus size: 28
75693239 GTTTACTAGC
*
75693249 CGTGTGTAGTACACGGGCCGGCATATGGG
1 CGTGTGTAGCACACGGGCCGGC-TATGGG
75693278 CGTGTGTAGCACACGGGCCGGCTATGGG
1 CGTGTGTAGCACACGGGCCGGCTATGGG
*
75693306 CTTGTG
1 CGTGTG
75693312 GTCAACTGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 11 0.34
29 21 0.66
ACGTcount: A:0.14, C:0.22, G:0.41, T:0.22
Consensus pattern (28 bp):
CGTGTGTAGCACACGGGCCGGCTATGGG
Found at i:75696593 original size:15 final size:15
Alignment explanation
Indices: 75696573--75696609 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
75696563 AATCAGTTGA
*
75696573 AAGCTCTTTTGACTG
1 AAGCTCCTTTGACTG
75696588 AAGCTCCTTTGACTG
1 AAGCTCCTTTGACTG
75696603 AAGCTCC
1 AAGCTCC
75696610 AGTGTTAGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.32
Consensus pattern (15 bp):
AAGCTCCTTTGACTG
Found at i:75708550 original size:40 final size:40
Alignment explanation
Indices: 75708491--75708632 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
75708481 AAATTGAATG
* * *
75708491 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
75708531 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
75708571 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
75708611 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
75708633 GCATTTGTGC
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 3 0.04
40 82 0.96
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:75708656 original size:40 final size:39
Alignment explanation
Indices: 75708529--75708658 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
75708519 ATGCTGGAAA
* * *
75708529 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CAGC
* *
75708570 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAG-C
*
75708608 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-GC
75708649 TTATATCCGG
1 TTATATCCGG
75708659 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAGC
Found at i:75712813 original size:27 final size:28
Alignment explanation
Indices: 75712757--75712826 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
75712747 AAACTTGTAC
75712757 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
75712785 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
75712812 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
75712827 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:75712837 original size:27 final size:27
Alignment explanation
Indices: 75712757--75712838 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
75712747 AAACTTGTAC
* *
75712757 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
75712785 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
75712812 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
75712839 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:75720817 original size:27 final size:28
Alignment explanation
Indices: 75720761--75720830 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
75720751 AAACTTGTAC
75720761 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
75720789 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
75720816 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
75720831 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:75720841 original size:27 final size:27
Alignment explanation
Indices: 75720761--75720842 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
75720751 AAACTTGTAC
* *
75720761 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
75720789 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
75720816 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
75720843 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:75726717 original size:40 final size:40
Alignment explanation
Indices: 75726662--75726871 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
75726652 AACATTGGAA
75726662 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75726702 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75726742 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
75726782 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
75726821 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
75726862 CTATATCCGG
1 ATATATCCGG
75726872 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:75734851 original size:40 final size:40
Alignment explanation
Indices: 75734796--75735005 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
75734786 AACATTGGAA
75734796 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75734836 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75734876 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
75734916 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
75734955 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
75734996 CTATATCCGG
1 ATATATCCGG
75735006 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:75739582 original size:27 final size:28
Alignment explanation
Indices: 75739526--75739584 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 28
75739516 TGGGAAGTAG
* *
75739526 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAACGAGA
*
75739554 TTGGGCCTGAT-GGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATATGAACGAGA
75739581 TTGG
1 TTGG
75739585 CCTAAAGTGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 17 0.61
28 11 0.39
ACGTcount: A:0.20, C:0.15, G:0.37, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAACGAGA
Found at i:75739983 original size:26 final size:27
Alignment explanation
Indices: 75739898--75740156 Score: 285
Period size: 27 Copynumber: 9.7 Consensus size: 27
75739888 TAATAAAGAT
* * *
75739898 AAATTATTGAAATACGCTCTATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
*
75739925 AAATT-GCTGAAATACCCTCGATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
*
75739952 AGATTATCGAAATACCCTCGA-TTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
75739978 AAATTATTGAAATACCCTC-AATTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
75740004 AAATTAT-GAAACACCTTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * * *
75740030 AAATTACCGAAATACCTTTGATTTATA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
75740057 AAATTATTGAAAATACCCT-TATTTGTA
1 AAATTATCG-AAATACCCTCGATTTGTA
*
75740084 AAATTATCAAAATACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
75740111 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
*
75740138 AAATTAATAGAAATACCCT
1 AAATT-ATCGAAATACCCT
75740157 TTAGTGTAAA
Statistics
Matches: 195, Mismatches: 29, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
25 10 0.05
26 55 0.28
27 111 0.57
28 19 0.10
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGATTTGTA
Found at i:75740164 original size:27 final size:27
Alignment explanation
Indices: 75740066--75740195 Score: 97
Period size: 27 Copynumber: 4.9 Consensus size: 27
75740056 AAAATTATTG
* *
75740066 AAAATACCCTTAT-TTGTAAAATTATC
1 AAAATACCCTTATAGTGTAAAATTAAC
* * *
75740092 AAAATACCCTCGAT-TTGTAAAATTACC
1 AAAATACCCT-TATAGTGTAAAATTAAC
* * * * *
75740119 GAAACACCCTCGAT-TTGTAAAATTAAT
1 AAAATACCCT-TATAGTGTAAAATTAAC
**
75740146 AGAAATACCCTT-TAGTGTAAAATTGCC
1 A-AAATACCCTTATAGTGTAAAATTAAC
75740173 AAAATACCCTTATAGTGTAAAAT
1 AAAATACCCTTATAGTGTAAAAT
75740196 GACTGACATA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
26 21 0.24
27 58 0.67
28 8 0.09
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATACCCTTATAGTGTAAAATTAAC
Found at i:75740192 original size:54 final size:53
Alignment explanation
Indices: 75739907--75740195 Score: 169
Period size: 54 Copynumber: 5.4 Consensus size: 53
75739897 TAAATTATTG
* * * * * * *
75739907 AAATACGCTCTATTTGTAAAATT-GCTGAAATACCCTCGATTTGTAAGATTATCG
1 AAATACCCT-TATTTGTAAAATTATC-AAAATACCCTCGATGTGTAAAATTACCA
* ** * **
75739961 AAATACCCTCGA-TTGTAAAATTATTGAAATACCCTCAAT-TGTAAAATTA-TG
1 AAATACCCT-TATTTGTAAAATTATCAAAATACCCTCGATGTGTAAAATTACCA
* * * * * * * **
75740012 AAACA-CCTTCGATTTGTAAAATTACCGAAATACCTTTGATTTATAAAATTATTGA
1 AAATACCCTT--ATTTGTAAAATTATCAAAATACCCTCGATGTGTAAAATTA-CCA
* *
75740067 AAATACCCTTATTTGTAAAATTATCAAAATACCCTCGATTTGTAAAATTACCG
1 AAATACCCTTATTTGTAAAATTATCAAAATACCCTCGATGTGTAAAATTACCA
* * ** *
75740120 AAACACCCTCGATTTGTAAAATTAAT-AGAAATACCCTTTA-GTGTAAAATTGCCA
1 AAATACCCT-TATTTGTAAAATT-ATCA-AAATACCCTCGATGTGTAAAATTACCA
*
75740174 AAATACCCTTATAGTGTAAAAT
1 AAATACCCTTAT-TTGTAAAAT
75740196 GACTGACATA
Statistics
Matches: 187, Mismatches: 36, Indels: 24
0.76 0.15 0.10
Matches are distributed among these distances:
50 3 0.02
51 6 0.03
52 31 0.17
53 42 0.22
54 85 0.45
55 16 0.09
56 4 0.02
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (53 bp):
AAATACCCTTATTTGTAAAATTATCAAAATACCCTCGATGTGTAAAATTACCA
Found at i:75740192 original size:81 final size:81
Alignment explanation
Indices: 75739898--75740195 Score: 243
Period size: 81 Copynumber: 3.7 Consensus size: 81
75739888 TAATAAAGAT
* * * * ** * * *
75739898 AAATTATTG-AAATACGCTCTATTTGTAAAATTGCTGAAATACCCTCGATTTGTAAGATTATCGA
1 AAATTATAGAAAATACCCT-TATGTGTAAAATTACCAAAATACCCTCGATGTGTAAAATTACCGA
* *
75739962 AATACCCTCGA-TTGTA
65 AACACCCTCGATTTATA
* * ** * * *
75739978 AAATTATTG-AAATACCCTCAAT-TGTAAAATTA-TGAAACACCTTCGATTTGTAAAATTACCGA
1 AAATTATAGAAAATACCCT-TATGTGTAAAATTACCAAAATACCCTCGATGTGTAAAATTACCGA
* * *
75740040 AATACCTTTGATTTATA
65 AACACCCTCGATTTATA
* * * *
75740057 AAATTATTGAAAATACCCTTATTTGTAAAATTATCAAAATACCCTCGATTTGTAAAATTACCGAA
1 AAATTATAGAAAATACCCTTATGTGTAAAATTACCAAAATACCCTCGATGTGTAAAATTACCGAA
*
75740122 ACACCCTCGATTTGTA
66 ACACCCTCGATTTATA
* *
75740138 AAATTAATAG-AAATACCCTT-TAGTGTAAAATTGCCAAAATACCCT-TATAGTGTAAAAT
1 AAATT-ATAGAAAATACCCTTAT-GTGTAAAATTACCAAAATACCCTCGAT-GTGTAAAAT
75740196 GACTGACATA
Statistics
Matches: 186, Mismatches: 25, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
78 35 0.19
79 24 0.13
80 42 0.23
81 82 0.44
82 3 0.02
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (81 bp):
AAATTATAGAAAATACCCTTATGTGTAAAATTACCAAAATACCCTCGATGTGTAAAATTACCGAA
ACACCCTCGATTTATA
Found at i:75740206 original size:27 final size:26
Alignment explanation
Indices: 75740147--75740227 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 26
75740137 AAAATTAATA
*
75740147 GAAATACCCTTTAGTGTAAAATTG-CC
1 GAAATACCCTTTAGTGTAAAA-TGACT
*
75740173 AAAATACCCTTATAGTGTAAAATGACT
1 GAAATACCCTT-TAGTGTAAAATGACT
* * *
75740200 GACATACCCCTGTAGGGTAAAATGACT
1 GAAATA-CCCTTTAGTGTAAAATGACT
75740227 G
1 G
75740228 TTTTGCCCTT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
26 12 0.26
27 30 0.65
28 4 0.09
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (26 bp):
GAAATACCCTTTAGTGTAAAATGACT
Found at i:75747556 original size:2 final size:2
Alignment explanation
Indices: 75747549--75747578 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
75747539 TGAATATTGA
75747549 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75747579 TGTTATAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75748336 original size:40 final size:40
Alignment explanation
Indices: 75748279--75748535 Score: 299
Period size: 40 Copynumber: 6.5 Consensus size: 40
75748269 CGGATGATAA
* *
75748279 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAG-TGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCT-ACTA-TAT
* *
75748319 CTGGGCTAAGTCCCGAAGGCAATTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* * *
75748359 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* *
75748399 CTGGGCTAAGTCCCGAAGGCATTTGTACGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* *
75748439 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* ** *
75748479 CCGGGCTATGTCATGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTA-CTATAT
* *
75748518 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
75748536 TACTTGGCTT
Statistics
Matches: 186, Mismatches: 28, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
38 13 0.07
39 16 0.09
40 156 0.84
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
Found at i:75748412 original size:80 final size:80
Alignment explanation
Indices: 75748279--75748535 Score: 331
Period size: 80 Copynumber: 3.2 Consensus size: 80
75748269 CGGATGATAA
* * * **
75748279 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCTGGGCTAAGTCCCGAAGGCAATTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCTGGGCTAAGTCCCGAAGGCAATTG
75748344 TGCGAGCTACTATAT
66 TGCGAGCTACTATAT
* *
75748359 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCTGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCTGGGCTAAGTCCCGAAGGCAATTG
*
75748424 TACGAGCTACTATAT
66 TGCGAGCTACTATAT
* * * * **
75748439 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTATGTCATGAAGGC-ATTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCTGGGCTAAGTCCCGAAGGCAATTG
*
75748503 AGCGAG-TAGCTATAT
66 TGCGAGCTA-CTATAT
* *
75748518 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
75748536 TACTTGGCTT
Statistics
Matches: 156, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
78 16 0.10
79 15 0.10
80 125 0.80
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCTGGGCTAAGTCCCGAAGGCAATTG
TGCGAGCTACTATAT
Found at i:75755223 original size:57 final size:55
Alignment explanation
Indices: 75755094--75755223 Score: 199
Period size: 57 Copynumber: 2.3 Consensus size: 55
75755084 ATGATGAAAA
*
75755094 AAAGGAAAAGAAAG-AAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATACAAG
1 AAAGAAAAAGAAAGAAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATACAAG
* *
75755148 AAAGAAAAAGAAAAAAAAAAGAGAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
1 AAAGAAAAAGAAAGAAAAAA-A-AAAAGCTCTCATGTTGTTCTTGGCCGAATACAAG
*
75755205 AAAGAAAAAGAAGGAAAAA
1 AAAGAAAAAGAAAGAAAAA
75755224 GACCTTTGAG
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
54 12 0.18
55 5 0.07
56 1 0.01
57 50 0.74
ACGTcount: A:0.54, C:0.10, G:0.21, T:0.15
Consensus pattern (55 bp):
AAAGAAAAAGAAAGAAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATACAAG
Found at i:75756532 original size:40 final size:39
Alignment explanation
Indices: 75756477--75756719 Score: 319
Period size: 40 Copynumber: 6.1 Consensus size: 39
75756467 CGGATGATAA
* *
75756477 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTA-TAT
75756517 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
75756557 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
*
75756597 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
75756637 CCGGGCTAAGTCCCAAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* * *
75756677 CCGGGTTATGTCCCGAAGGCA-TTGAGCGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAT
75756716 CCGG
1 CCGG
75756720 TTAAATCCCG
Statistics
Matches: 182, Mismatches: 18, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
38 2 0.01
39 18 0.10
40 161 0.88
41 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:75759053 original size:26 final size:26
Alignment explanation
Indices: 75759017--75759069 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
75759007 CCACCGTCCC
75759017 AGATAGGGTCTTACTCACACACATAT
1 AGATAGGGTCTTACTCACACACATAT
*
75759043 AGATAGGGTCTTACTCGCACACATAT
1 AGATAGGGTCTTACTCACACACATAT
75759069 A
1 A
75759070 TCGGAGTCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (26 bp):
AGATAGGGTCTTACTCACACACATAT
Found at i:75759202 original size:56 final size:56
Alignment explanation
Indices: 75759049--75759202 Score: 200
Period size: 56 Copynumber: 2.8 Consensus size: 56
75759039 ATATAGATAG
* *
75759049 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATACCAACGTACAAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTACAAAACGT
** * * * *
75759105 GGTCTTACTCATACACATATATCGGAATCACAAATCAATGCCAACGTATAAAATGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTACAAAACGT
* ** *
75759161 GGTCTTACTCGCACATATATATCAAAATCACATGTCGATGCC
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCC
75759203 TCATATACAT
Statistics
Matches: 82, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
56 82 1.00
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTACAAAACGT
Found at i:75765924 original size:28 final size:27
Alignment explanation
Indices: 75765861--75765930 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
75765851 ATAGTGAGTC
*
75765861 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
75765888 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
75765916 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75765931 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:75773845 original size:39 final size:40
Alignment explanation
Indices: 75773800--75773979 Score: 304
Period size: 40 Copynumber: 4.7 Consensus size: 40
75773790 CACAACTCGG
75773800 ATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC-A
1 ATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGA
75773839 ATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGA
1 ATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGA
75773879 ATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGA
1 ATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGA
75773919 ATGCCTTCGGGTCTTAGCCCGGATATAT---CTCG--C--
1 ATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGA
75773952 ATGCCTTCGGGTCTTAGCCCGGATATAT
1 ATGCCTTCGGGTCTTAGCCCGGATATAT
75773980 TTCCAATGTT
Statistics
Matches: 140, Mismatches: 0, Indels: 8
0.95 0.00 0.05
Matches are distributed among these distances:
33 28 0.20
35 1 0.01
37 4 0.03
39 38 0.27
40 69 0.49
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (40 bp):
ATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGA
Found at i:75782053 original size:40 final size:40
Alignment explanation
Indices: 75781974--75782153 Score: 318
Period size: 40 Copynumber: 4.7 Consensus size: 40
75781964 TTGCACAAAG
75781974 GCCTTCGGGTCTTAGCCCGG--ATATCAACT----CGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
75782008 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
75782048 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
75782088 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
75782128 GCCTTCGGGTCTTAGCCCGGATATAT
1 GCCTTCGGGTCTTAGCCCGGATATAT
75782154 TTCCAATGTT
Statistics
Matches: 140, Mismatches: 0, Indels: 6
0.96 0.00 0.04
Matches are distributed among these distances:
34 20 0.14
36 9 0.06
40 111 0.79
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
Found at i:75784067 original size:14 final size:14
Alignment explanation
Indices: 75784048--75784076 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
75784038 ATAAGAAGAA
75784048 TGAAGAACATGGCT
1 TGAAGAACATGGCT
75784062 TGAAGAACATGGCT
1 TGAAGAACATGGCT
75784076 T
1 T
75784077 TAATTATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24
Consensus pattern (14 bp):
TGAAGAACATGGCT
Found at i:75791601 original size:40 final size:39
Alignment explanation
Indices: 75791556--75791743 Score: 182
Period size: 40 Copynumber: 4.7 Consensus size: 39
75791546 ATAACCACAA
* * *** *
75791556 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTC
75791596 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
75791636 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * *
75791676 GCATAAATGCCTTCGGGACTTAGCCCGGATATAATC-ACTA
1 GCA-CAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * *
75791716 GCATAAATGCCTTCAGGACTTAGCCCGG
1 GCA-CAATGCCTTCGGGTCTTAGCCCGG
75791744 GTATCATTCA
Statistics
Matches: 134, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
40 131 0.98
41 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:75791663 original size:80 final size:80
Alignment explanation
Indices: 75791543--75791743 Score: 242
Period size: 80 Copynumber: 2.5 Consensus size: 80
75791533 AATTTAGCCA
* * * * * ** *
75791543 GATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGCCT
1 GATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAAATGCCT
*
75791608 TCGGGTCTTAGCCCG
66 TCGGGACTTAGCCCG
* * * *
75791623 GATATAA-CAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCC
1 GATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAAATGCC
75791687 TTCGGGACTTAGCCCG
65 TTCGGGACTTAGCCCG
* * *
75791703 GATATAATCACTAGCATAAATGCCTTCAGGACTTAGCCCGG
1 GATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
75791744 GTATCATTCA
Statistics
Matches: 102, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.01
80 100 0.98
81 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
GATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAAATGCCT
TCGGGACTTAGCCCG
Found at i:75799759 original size:25 final size:25
Alignment explanation
Indices: 75799730--75799779 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
75799720 CCTTATAATA
* * *
75799730 TAAAAATGACCGTTTTGCCCCTAGG
1 TAAAAATGACCATTATACCCCTAGG
75799755 TAAAAATGACCATTATACCCCTAGG
1 TAAAAATGACCATTATACCCCTAGG
75799780 GTTTATGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (25 bp):
TAAAAATGACCATTATACCCCTAGG
Found at i:75799863 original size:11 final size:11
Alignment explanation
Indices: 75799827--75799882 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
75799817 CATGGTATGT
75799827 ATGATATGCAC
1 ATGATATGCAC
* *
75799838 ATGACATG--T
1 ATGATATGCAC
75799847 ATGATATGCAC
1 ATGATATGCAC
*
75799858 ATGATATG--T
1 ATGATATGCAC
75799867 ATGATATGCAC
1 ATGATATGCAC
75799878 ATGAT
1 ATGAT
75799883 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:75799882 original size:20 final size:20
Alignment explanation
Indices: 75799816--75799882 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
75799806 ATTTTGATAA
*
75799816 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
75799836 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
75799856 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
75799876 ACATGAT
1 ACATGAT
75799883 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:75799987 original size:23 final size:24
Alignment explanation
Indices: 75799932--75800035 Score: 167
Period size: 23 Copynumber: 4.4 Consensus size: 24
75799922 GAGGAAGTGC
75799932 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
75799956 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
75799980 -AAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
75800003 AAAAGGG-TTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
75800026 AAAAGAGGCT
1 AAAAG-GGCT
75800036 AGGCTTTCAG
Statistics
Matches: 74, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
23 41 0.55
24 32 0.43
25 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:75800002 original size:47 final size:46
Alignment explanation
Indices: 75799933--75800028 Score: 165
Period size: 47 Copynumber: 2.1 Consensus size: 46
75799923 AGGAAGTGCA
75799933 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGG-TTATGCCCCAGTTATT
* *
75799980 AAAGGGCTTATGCCCTAGTTATTAAAAGGGTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGTTATGCCCCAGTTATT
75800026 AAA
1 AAA
75800029 AGAGGCTAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
46 18 0.38
47 29 0.62
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGGGTTATGCCCCAGTTATT
Found at i:75800282 original size:31 final size:30
Alignment explanation
Indices: 75800243--75800305 Score: 99
Period size: 31 Copynumber: 2.1 Consensus size: 30
75800233 CGTTTACAGT
75800243 AAAAGCTTCGGCCCAGTAATATGAAATATG
1 AAAAGCTTCGGCCCAGTAATATGAAATATG
**
75800273 AAAAGGCTTCGGCCCAGTGTTATGAAATATG
1 AAAA-GCTTCGGCCCAGTAATATGAAATATG
75800304 AA
1 AA
75800306 TTATGAAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 4 0.13
31 26 0.87
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (30 bp):
AAAAGCTTCGGCCCAGTAATATGAAATATG
Found at i:75802332 original size:17 final size:19
Alignment explanation
Indices: 75802290--75802333 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
75802280 ATGAAATTTT
*
75802290 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
75802309 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
75802327 AA-TATTA
1 AATTATTA
75802334 CTGTAAGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:75804882 original size:11 final size:11
Alignment explanation
Indices: 75804846--75804901 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
75804836 CATGGTATGA
75804846 ATGATATGCAC
1 ATGATATGCAC
* *
75804857 ATGACATG--T
1 ATGATATGCAC
75804866 ATGATATGCAC
1 ATGATATGCAC
*
75804877 ATGATATG--T
1 ATGATATGCAC
75804886 ATGATATGCAC
1 ATGATATGCAC
75804897 ATGAT
1 ATGAT
75804902 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:75804901 original size:20 final size:20
Alignment explanation
Indices: 75804835--75804901 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
75804825 ATTTTGATAA
* *
75804835 ACATGGTATGAATGATATGC
1 ACATGATATGTATGATATGC
*
75804855 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
75804875 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
75804895 ACATGAT
1 ACATGAT
75804902 GTATTCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:75805006 original size:23 final size:24
Alignment explanation
Indices: 75804951--75805068 Score: 179
Period size: 23 Copynumber: 5.0 Consensus size: 24
75804941 GAGGAAGTGC
75804951 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
75804975 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
75804999 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
75805022 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
75805045 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
75805069 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
23 41 0.47
24 38 0.44
25 8 0.09
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:75805021 original size:47 final size:46
Alignment explanation
Indices: 75804952--75805047 Score: 174
Period size: 47 Copynumber: 2.1 Consensus size: 46
75804942 AGGAAGTGCA
*
75804952 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTT-TGCCCCAGTTATT
75804999 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTGCCCCAGTTATT
75805045 AAA
1 AAA
75805048 AGAGGCTAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
46 15 0.31
47 33 0.69
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTGCCCCAGTTATT
Found at i:75805297 original size:31 final size:31
Alignment explanation
Indices: 75805262--75805324 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
75805252 CGTTTATAGT
75805262 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
75805293 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
75805324 A
1 A
75805325 TTATGAAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:75811021 original size:31 final size:31
Alignment explanation
Indices: 75810983--75811058 Score: 125
Period size: 31 Copynumber: 2.5 Consensus size: 31
75810973 TGCCCCAAGA
* *
75810983 TACACGGGCGTGTGAGTCCACACGGCCCACC
1 TACACGGGTGTGTGAGTCCACACAGCCCACC
*
75811014 TACACGGGTGTGTGAGTCCATACAGCCCACC
1 TACACGGGTGTGTGAGTCCACACAGCCCACC
75811045 TACACGGGTGTGTG
1 TACACGGGTGTGTG
75811059 TCCCTTTATG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.20, C:0.32, G:0.30, T:0.18
Consensus pattern (31 bp):
TACACGGGTGTGTGAGTCCACACAGCCCACC
Found at i:75813138 original size:44 final size:44
Alignment explanation
Indices: 75813073--75813156 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
75813063 TTGATATCTC
* *
75813073 AAAGTCCATGGTTGTACCATGGCAATTAAGGAAGAATTGATGGA
1 AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGATGGA
* *
75813117 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGA
1 AAAGTCCATGGTT-ATAACATGGCAATTAAGGAAGAATTGA
75813157 CGGTTAAGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 3 0.09
44 32 0.91
ACGTcount: A:0.37, C:0.12, G:0.25, T:0.26
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGATGGA
Found at i:75813354 original size:47 final size:47
Alignment explanation
Indices: 75813296--75813417 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
75813286 GCATTGGCAC
*
75813296 TAAGACAAGGATACCATGTAACACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAACACCATGTTTGGAACATGACATTTGG
75813343 TAAGACAAGGATACCATGTAACACCATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATACCATGTAACACCATGTTTGGAACATGACATTTGG
* * *
75813390 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAACACCATG
75813418 CCAAGGCATG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAACACCATGTTTGGAACATGACATTTGG
Found at i:75813460 original size:54 final size:54
Alignment explanation
Indices: 75813396--75813602 Score: 238
Period size: 54 Copynumber: 3.9 Consensus size: 54
75813386 TTGGTAAGAT
* * *
75813396 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * * * *
75813450 AAGGAAATCATGTAATACCATGTCGAGACATGGCATTGATGAGTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * *
75813504 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGTATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * *
75813557 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTGAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTC
75813603 AAAAAGGAAA
Statistics
Matches: 128, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
52 4 0.03
53 42 0.33
54 78 0.61
55 4 0.03
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:75813591 original size:107 final size:108
Alignment explanation
Indices: 75813404--75813600 Score: 297
Period size: 107 Copynumber: 1.8 Consensus size: 108
75813394 ATAAGGATAT
* * *
75813404 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAATACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
* *
75813469 ATGTCGAGACATGGCATTGATGAGTACTATAAGGCAAAGGTCC
66 ATGTCAAGACATGGCAATGATGAGTACTATAAGGCAAAGGTCC
* * * *
75813512 CATGTAAGACCATGCCAAGGCATGGTATTGGTGAGTTC-ATAAGGCAAGGATACCACGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
*
75813576 ATGTCAAGACATGGCAATGGTGAGT
66 ATGTCAAGACATGGCAATGATGAGT
75813601 TCAAAAAGGA
Statistics
Matches: 79, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
107 44 0.56
108 35 0.44
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
ATGTCAAGACATGGCAATGATGAGTACTATAAGGCAAAGGTCC
Found at i:75814294 original size:55 final size:55
Alignment explanation
Indices: 75814228--75814339 Score: 206
Period size: 55 Copynumber: 2.0 Consensus size: 55
75814218 TGGTATGTAA
75814228 ATATTTGATAATGATTAGCTATTGAAATGGATAATGAAGAACATGTTTTGGTGTT
1 ATATTTGATAATGATTAGCTATTGAAATGGATAATGAAGAACATGTTTTGGTGTT
* *
75814283 ATATTTGATAATGGTTAGCTATTGAAATGGCTAATGAAGAACATGTTTTGGTGTT
1 ATATTTGATAATGATTAGCTATTGAAATGGATAATGAAGAACATGTTTTGGTGTT
75814338 AT
1 AT
75814340 GTATGCCTAA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.33, C:0.04, G:0.22, T:0.40
Consensus pattern (55 bp):
ATATTTGATAATGATTAGCTATTGAAATGGATAATGAAGAACATGTTTTGGTGTT
Found at i:75824715 original size:40 final size:40
Alignment explanation
Indices: 75824523--75824708 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
75824513 TCGAATGATG
* * *
75824523 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
75824563 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
75824603 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
75824643 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
75824684 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75824709 AACGAGTAGC
Statistics
Matches: 134, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 1 0.01
40 123 0.92
41 10 0.07
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75824715 original size:80 final size:80
Alignment explanation
Indices: 75824523--75824741 Score: 270
Period size: 80 Copynumber: 2.8 Consensus size: 80
75824513 TCGAATGATG
* * **
75824523 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
75824587 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* *
75824603 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCATT
75824667 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTA-AA
* **
75824684 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
75824742 TACGTGATTC
Statistics
Matches: 122, Mismatches: 11, Indels: 13
0.84 0.08 0.09
Matches are distributed among these distances:
79 16 0.13
80 97 0.80
81 9 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:75832850 original size:40 final size:40
Alignment explanation
Indices: 75832658--75832843 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
75832648 TCGAATGATG
* * *
75832658 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
75832698 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
75832738 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
75832778 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
75832819 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75832844 AACGAGTAGC
Statistics
Matches: 134, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 1 0.01
40 123 0.92
41 10 0.07
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75832850 original size:80 final size:80
Alignment explanation
Indices: 75832658--75832876 Score: 270
Period size: 80 Copynumber: 2.8 Consensus size: 80
75832648 TCGAATGATG
* * **
75832658 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
75832722 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* *
75832738 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCATT
75832802 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTA-AA
* **
75832819 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
75832877 TACGTGATTC
Statistics
Matches: 122, Mismatches: 11, Indels: 13
0.84 0.08 0.09
Matches are distributed among these distances:
79 16 0.13
80 97 0.80
81 9 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:75837665 original size:40 final size:40
Alignment explanation
Indices: 75837533--75837828 Score: 404
Period size: 40 Copynumber: 7.5 Consensus size: 40
75837523 AAGCCAAGTA
* * * *
75837533 CCTTCGGGATTTA-ACCGGATATAACT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATAT-AGTAACTCGCACAAATG
*
75837571 CCTTCGGGACATAGCCCGGATATAGTAACTCGCAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
75837610 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
75837650 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
75837690 CCTTCGGGACTTAGCCCGGATGTAATAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
75837730 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
75837770 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
75837810 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
75837829 TTATCATCCG
Statistics
Matches: 234, Mismatches: 20, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
38 13 0.06
39 55 0.24
40 166 0.71
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:75839704 original size:29 final size:29
Alignment explanation
Indices: 75839672--75839749 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
75839662 ATACCCTCCG
** *
75839672 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
75839701 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
75839730 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
75839750 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:75847556 original size:29 final size:29
Alignment explanation
Indices: 75847524--75847601 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
75847514 ATACCCTCCG
** *
75847524 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
75847553 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
75847582 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
75847602 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:75855209 original size:28 final size:27
Alignment explanation
Indices: 75855146--75855215 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
75855136 ATAGTGAGTC
*
75855146 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
75855173 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
75855201 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75855216 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:75857821 original size:26 final size:26
Alignment explanation
Indices: 75857792--75857847 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
75857782 AGGCAAAATA
*
75857792 GGCCATATGGGCCAAACGGTCGTATG
1 GGCCATATGGGCCAAACGGGCGTATG
75857818 GGCCATATGGGCCAAACGGGCGTATG
1 GGCCATATGGGCCAAACGGGCGTATG
75857844 GGCC
1 GGCC
75857848 CACACGGGTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.21, C:0.25, G:0.38, T:0.16
Consensus pattern (26 bp):
GGCCATATGGGCCAAACGGGCGTATG
Found at i:75870645 original size:38 final size:38
Alignment explanation
Indices: 75870603--75870679 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
75870593 AAAATGGTAA
*
75870603 GATACTTTATCAAACTGTCTTTCAAGTACACTGATACT
1 GATACTTTATCAAACTGTCTTTCAAGTACACGGATACT
75870641 GATACTTTATCAAACTGTCTTTCAAGTACACGGATACT
1 GATACTTTATCAAACTGTCTTTCAAGTACACGGATACT
75870679 G
1 G
75870680 TTAATAATCG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.35
Consensus pattern (38 bp):
GATACTTTATCAAACTGTCTTTCAAGTACACGGATACT
Found at i:75872165 original size:24 final size:24
Alignment explanation
Indices: 75872133--75872183 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
75872123 AATTTTATGA
75872133 CATAGCATTTTTGGTAAGGCAAAG
1 CATAGCATTTTTGGTAAGGCAAAG
75872157 CATAGCATTTTTGGTAAGGCAAAG
1 CATAGCATTTTTGGTAAGGCAAAG
75872181 CAT
1 CAT
75872184 TATATAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (24 bp):
CATAGCATTTTTGGTAAGGCAAAG
Found at i:75876691 original size:26 final size:27
Alignment explanation
Indices: 75876648--75876705 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 27
75876638 AAAAATTTAA
* * **
75876648 AATATAAAAATGTTAAAGATAGTTTTT
1 AATATAAAAATCTAAAAGATAGAATTT
75876675 AATATAAAAA-CTAAAAGATAGAATTT
1 AATATAAAAATCTAAAAGATAGAATTT
75876701 AATAT
1 AATAT
75876706 TTCAACATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 17 0.63
27 10 0.37
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (27 bp):
AATATAAAAATCTAAAAGATAGAATTT
Found at i:75880623 original size:2 final size:2
Alignment explanation
Indices: 75880616--75880656 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
75880606 AAGATAATGG
* *
75880616 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TG TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
75880657 TTATCCCAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (2 bp):
TA
Found at i:75881122 original size:2 final size:2
Alignment explanation
Indices: 75881115--75881157 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
75881105 AGTTATTTTA
*
75881115 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75881157 A
1 A
75881158 CCAATATTCA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:75884306 original size:33 final size:33
Alignment explanation
Indices: 75884264--75884333 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
75884254 GTGTTGAGTT
75884264 TTCTTGTTGTTTTCTTCAACACTCTTATAAGCA
1 TTCTTGTTGTTTTCTTCAACACTCTTATAAGCA
75884297 TTCTTGTTGTTTTCTTCAACACTCTTATAAGCA
1 TTCTTGTTGTTTTCTTCAACACTCTTATAAGCA
75884330 TTCT
1 TTCT
75884334 ATTAAAGAGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.20, C:0.21, G:0.09, T:0.50
Consensus pattern (33 bp):
TTCTTGTTGTTTTCTTCAACACTCTTATAAGCA
Found at i:75885344 original size:43 final size:43
Alignment explanation
Indices: 75885275--75885396 Score: 138
Period size: 43 Copynumber: 2.8 Consensus size: 43
75885265 TTACACCACT
* * * *
75885275 ATGTGGATGAACCACTAAACGTTGCAAATGAA-CTGCTAATATG
1 ATGTGGATAAACCACTAAACGGTGCAAA-CAAGCTGCAAATATG
**
75885318 ATGTGGATAAACCACTATTCGGTGCAAACAAGCTGCAAATATG
1 ATGTGGATAAACCACTAAACGGTGCAAACAAGCTGCAAATATG
* * **
75885361 GTGTGGATTAACCACTAAATAGTGCAAACAAGCTGC
1 ATGTGGATAAACCACTAAACGGTGCAAACAAGCTGC
75885397 TAACACTTCC
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 2 0.03
43 64 0.97
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (43 bp):
ATGTGGATAAACCACTAAACGGTGCAAACAAGCTGCAAATATG
Found at i:75887016 original size:26 final size:26
Alignment explanation
Indices: 75886968--75887020 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
75886958 TATTTTGATG
*
75886968 TTTTATACAACATTTTGTTTATATAT
1 TTTTATACAACATTTTGTATATATAT
75886994 TTTTATAC-ACATTTATGTATATATAT
1 TTTTATACAACATTT-TGTATATATAT
75887020 T
1 T
75887021 AATTTAGTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.57
Consensus pattern (26 bp):
TTTTATACAACATTTTGTATATATAT
Found at i:75894483 original size:46 final size:46
Alignment explanation
Indices: 75894433--75894608 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
75894423 ATGGTTGGCA
75894433 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
75894479 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
75894526 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
75894572 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75894609 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:75894588 original size:93 final size:93
Alignment explanation
Indices: 75894429--75894600 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75894419 TAGGATGGTT
* *
75894429 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75894494 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
75894522 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75894587 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
75894601 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:75897595 original size:15 final size:15
Alignment explanation
Indices: 75897556--75897634 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
75897546 GTATCTTGGG
*
75897556 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
75897571 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
75897586 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
75897600 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
75897615 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
75897629 TTTCTT
1 TTTCTT
75897635 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:75897619 original size:29 final size:29
Alignment explanation
Indices: 75897547--75897633 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
75897537 CATAGTATCG
* * * *
75897547 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
75897577 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
75897606 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
75897634 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:75900062 original size:46 final size:46
Alignment explanation
Indices: 75900007--75900187 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
75899997 TAGGATGGTT
75900007 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
75900053 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
75900099 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
75900146 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75900188 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:75900168 original size:93 final size:93
Alignment explanation
Indices: 75900009--75900179 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
75899999 GGATGGTTGA
* *
75900009 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75900074 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
75900102 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75900167 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
75900180 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75908941 original size:51 final size:48
Alignment explanation
Indices: 75908811--75909623 Score: 305
Period size: 45 Copynumber: 17.7 Consensus size: 48
75908801 GCAGTAGAGT
* * * * * *
75908811 AGATCAACACAAGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAA
1 AGATAAACACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGA
* * *
75908859 AGGT---CGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGA
1 AGATAAACACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGA
* * *
75908904 AGCTATAAACCACAAATCTCATCTCTCTGAAGTTGCAGT-----AGA--GT
1 AG--ATAAA-CACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGA
* * * * *
75908948 AGATCAACACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA
1 AGATAAACACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGA
* *
75908996 AGAT--A-GCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGA
1 AGATAAACACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGA
* * * * * *
75909041 ATCTATAAACCACAGATCTCATCTCTCTGAAGTTGTAGT-----AGA--GT
1 A--GATAAA-CACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGA
* * * ** * * *
75909085 AGGTCAACACAAGTCTTATCTCATTGAAGTTGCAGTGGAGCAGACTAA
1 AGATAAACACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGA
* * *
75909133 AGGT--A-ACAAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGA
1 AGATAAACACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGA
* * * *
75909178 AGCTATAAACCACAGATCTCATCTCTCTGAAGTTGCAGT-----AGA--GT
1 AG--ATAAA-CACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGA
* ** * * * *
75909222 AGATCAACACAGGTCATATCTCCCTGAAGTTGTAGT-GAAGCAGACTAA
1 AGATAAACACAAATCTTATCTCCCTGAAGTTGCAGTGGAA-CAGATTGA
* *
75909270 AGAT--A-GCAAATCTTA-CTTCCCTGAAGTTACAGTGGAACAGATTGA
1 AGATAAACACAAATCTTATC-TCCCTGAAGTTGCAGTGGAACAGATTGA
* * * * *
75909315 AGCTATAAACCACAGATTTTATCTCTCTGAAGATGCAGT-----AGA--GC
1 AG--ATAAA-CACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGA
* * * ** *
75909359 AGATCAACACAAGTCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTAA
1 AGATAAACACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGA
* *
75909407 AGAT--A-GCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGA
1 AGATAAACACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGA
* * * * ** * *
75909452 AGCTATAAACCACAGATCTCATATCTCTGAA---G-A-TACAATAGA--GT
1 AG--ATAAA-CACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGA
* * * * * * *
75909496 AGATCAACACAAACCTTATTTCCCTGAAGTCGCAGTGGAGCAGACTAA
1 AGATAAACACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGA
** * *
75909544 AGAT---GGCAAATCTTATCTCCCTGAAGTTGCATTAGAACAGATTGA
1 AGATAAACACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGA
* * *
75909589 AGCTATAAATCACAGATCTCATCTCTCTGAAGTTG
1 AG--ATAAA-CACAAATCTTATCTCCCTGAAGTTG
75909624 TAGTAGAGCA
Statistics
Matches: 556, Mismatches: 135, Indels: 145
0.67 0.16 0.17
Matches are distributed among these distances:
41 112 0.20
42 19 0.03
44 16 0.03
45 202 0.36
46 42 0.08
47 11 0.02
48 24 0.04
49 4 0.01
51 125 0.22
52 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (48 bp):
AGATAAACACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGA
Found at i:75909647 original size:137 final size:137
Alignment explanation
Indices: 75908239--75909644 Score: 2247
Period size: 137 Copynumber: 10.3 Consensus size: 137
75908229 ACACCAACAG
* * * *
75908239 ATCTCTTTGAAGTTTCAGTAGAGTAGATTAACACAAGTCTTATCTCACTGAAGTTGCAGTGGAGC
1 ATCTCTCTGAAGTTGCAGTAGAGTAGATCAACACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGC
75908304 AGACTAAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCAC
66 AGACTAAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCAC
*
75908369 AAATCTC
131 AGATCTC
* * * * *
75908376 ATCTC-CTTGAAGTTTCAGTGGAGTAGATCAACACAAGTCTTATCTCTCTGAAGTTACAATGGAG
1 ATCTCTC-TGAAGTTGCAGTAGAGTAGATCAACACAAGTCTTATCTCCCTGAAGTTGCAGTGGAG
* *
75908440 CAGACTAAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAAATTGAAGTTATAAACCA
65 CAGACTAAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCA
75908505 CAGATCTC
130 CAGATCTC
* *
75908513 ATCTCTCTGAAGTTGCAGTAAAGTAGATCAACACAAGTCTTATCTCACTGAAGTTGCAGTGGAGC
1 ATCTCTCTGAAGTTGCAGTAGAGTAGATCAACACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGC
* *
75908578 AGACTAAAGATAGCAAATCTTATTTTCCTGAAGTTACAGTGGAACAGATTGAAGCTATAAACCAC
66 AGACTAAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCAC
75908643 AGATCTC
131 AGATCTC
75908650 ATCTCTCTGAAGTTGCAGTAGAGTAGATCAACACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGC
1 ATCTCTCTGAAGTTGCAGTAGAGTAGATCAACACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGC
* *
75908715 AGACTAAAGATAGAAAATCTTATTTCCTTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCAC
66 AGACTAAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCAC
75908780 AGATCTC
131 AGATCTC
* * *
75908787 ATCTCTATGATGTTGCAGTAGAGTAGATCAACACAAGTCTTATCTCTCTGAAGTTGCAGTGGAGC
1 ATCTCTCTGAAGTTGCAGTAGAGTAGATCAACACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGC
* *
75908852 AGACTAAAGGTCGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCAC
66 AGACTAAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCAC
*
75908917 AAATCTC
131 AGATCTC
75908924 ATCTCTCTGAAGTTGCAGTAGAGTAGATCAACACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGC
1 ATCTCTCTGAAGTTGCAGTAGAGTAGATCAACACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGC
*
75908989 AGACTAAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAATCTATAAACCAC
66 AGACTAAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCAC
75909054 AGATCTC
131 AGATCTC
* * **
75909061 ATCTCTCTGAAGTTGTAGTAGAGTAGGTCAACACAAGTCTTATCTCATTGAAGTTGCAGTGGAGC
1 ATCTCTCTGAAGTTGCAGTAGAGTAGATCAACACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGC
* * *
75909126 AGACTAAAGGTAACAAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAGCTATAAACCAC
66 AGACTAAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCAC
75909191 AGATCTC
131 AGATCTC
* * * *
75909198 ATCTCTCTGAAGTTGCAGTAGAGTAGATCAACACAGGTCATATCTCCCTGAAGTTGTAGTGAAGC
1 ATCTCTCTGAAGTTGCAGTAGAGTAGATCAACACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGC
* *
75909263 AGACTAAAGATAGCAAATCTTACTTCCCTGAAGTTACAGTGGAACAGATTGAAGCTATAAACCAC
66 AGACTAAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCAC
* *
75909328 AGATTTT
131 AGATCTC
* * * *
75909335 ATCTCTCTGAAGATGCAGTAGAGCAGATCAACACAAGTCTTATCTCCCTGAAGTTGTAGTGGAGT
1 ATCTCTCTGAAGTTGCAGTAGAGTAGATCAACACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGC
*
75909400 AGATTAAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCAC
66 AGACTAAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCAC
75909465 AGATCTC
131 AGATCTC
* * * * ** * *
75909472 ATATCTCTGAAGATACAATAGAGTAGATCAACACAAACCTTATTTCCCTGAAGTCGCAGTGGAGC
1 ATCTCTCTGAAGTTGCAGTAGAGTAGATCAACACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGC
* * * * *
75909537 AGACTAAAGATGGCAAATCTTATCTCCCTGAAGTTGCATTAGAACAGATTGAAGCTATAAATCAC
66 AGACTAAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCAC
75909602 AGATCTC
131 AGATCTC
* * *
75909609 ATCTCTCTGAAGTTGTAGTAGAGCAGATCAAAACAA
1 ATCTCTCTGAAGTTGCAGTAGAGTAGATCAACACAA
75909645 ACCCTATCTT
Statistics
Matches: 1170, Mismatches: 97, Indels: 4
0.92 0.08 0.00
Matches are distributed among these distances:
137 1169 1.00
138 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (137 bp):
ATCTCTCTGAAGTTGCAGTAGAGTAGATCAACACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGC
AGACTAAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCAC
AGATCTC
Found at i:75911306 original size:25 final size:25
Alignment explanation
Indices: 75911273--75911320 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
75911263 CATTTTGATG
*
75911273 TTTTATACAACATTT-TGTTTATAAT
1 TTTTATAC-ACATTTATGTATATAAT
75911298 TTTTATACACATTTATGTATATA
1 TTTTATACACATTTATGTATATA
75911321 TATTAATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.33, C:0.08, G:0.04, T:0.54
Consensus pattern (25 bp):
TTTTATACACATTTATGTATATAAT
Found at i:75913534 original size:12 final size:12
Alignment explanation
Indices: 75913503--75913527 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
75913493 TTGTGTGTTC
75913503 TTTATTTTATTT
1 TTTATTTTATTT
75913515 TTTATTTTATTT
1 TTTATTTTATTT
75913527 T
1 T
75913528 ATTTTTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:75919557 original size:24 final size:24
Alignment explanation
Indices: 75919522--75919595 Score: 139
Period size: 24 Copynumber: 3.1 Consensus size: 24
75919512 GGTTGTACCT
*
75919522 AAAATATGAATATATATTTTTTCA
1 AAAATATAAATATATATTTTTTCA
75919546 AAAATATAAATATATATTTTTTCA
1 AAAATATAAATATATATTTTTTCA
75919570 AAAATATAAATATATATTTTTTCA
1 AAAATATAAATATATATTTTTTCA
75919594 AA
1 AA
75919596 CTTTTTATTT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.45
Consensus pattern (24 bp):
AAAATATAAATATATATTTTTTCA
Found at i:75919903 original size:19 final size:19
Alignment explanation
Indices: 75919875--75919911 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
75919865 ATTCAATAAC
75919875 CTATAACTATATATAAATA
1 CTATAACTATATATAAATA
* *
75919894 CTATATCTATCTATAAAT
1 CTATAACTATATATAAAT
75919912 GCAGGGCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.41
Consensus pattern (19 bp):
CTATAACTATATATAAATA
Found at i:75921712 original size:28 final size:28
Alignment explanation
Indices: 75921670--75921736 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
75921660 CGTGTCCCTA
* * *
75921670 GCCCGCGTTCTTCACACGGCATTGTCAC
1 GCCCGTGTCCTTCACACGGCATTGACAC
* * *
75921698 GTCCGTGTCCTTCACACGGCCTTGACAT
1 GCCCGTGTCCTTCACACGGCATTGACAC
75921726 GCCCGTGTCCT
1 GCCCGTGTCCT
75921737 AGCCCATGTG
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.12, C:0.39, G:0.22, T:0.27
Consensus pattern (28 bp):
GCCCGTGTCCTTCACACGGCATTGACAC
Found at i:75922878 original size:47 final size:45
Alignment explanation
Indices: 75922727--75922895 Score: 146
Period size: 46 Copynumber: 3.6 Consensus size: 45
75922717 TCAACTCGTA
* * * * ** *
75922727 GCCGATGCATGTCCCAGACATGTCTTACACTGGCGTACATCTTGAG
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCCT-CGTCTCAAT
**
75922773 GTTGATGCATGTCCCAAACATGTCTTACACTAGCCCTCGTCTCAAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTAG-CCTCGTCTCAAT
*
75922819 GCCGATGCCATGTCCCAAACATGGTCTTAGACTAG-CTC-TCAT-AATGT
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCCTCGTC-TCAA--T
*
75922866 GGCCGATGCATGTCCCAGACATGTCTTACA
1 -GCCGATGCATGTCCCAAACATGTCTTACA
75922896 TTAACTCACA
Statistics
Matches: 102, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
45 4 0.04
46 50 0.49
47 30 0.29
48 18 0.18
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTAGCCTCGTCTCAAT
Found at i:75924205 original size:31 final size:31
Alignment explanation
Indices: 75924167--75924235 Score: 97
Period size: 31 Copynumber: 2.2 Consensus size: 31
75924157 AATAGCGGTG
75924167 TTTTAGATAGTATG-AAAAATCAATAAGGG-TA
1 TTTTAGATAGTA-GCAAAAATCAAT-AGGGATA
75924198 TTTTAGATAGTAGCAAAAATCAATAGGGATA
1 TTTTAGATAGTAGCAAAAATCAATAGGGATA
*
75924229 ATTTAGA
1 TTTTAGA
75924236 CATCATAACT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
30 5 0.14
31 30 0.86
ACGTcount: A:0.45, C:0.04, G:0.19, T:0.32
Consensus pattern (31 bp):
TTTTAGATAGTAGCAAAAATCAATAGGGATA
Found at i:75928536 original size:40 final size:40
Alignment explanation
Indices: 75928481--75928740 Score: 373
Period size: 40 Copynumber: 6.5 Consensus size: 40
75928471 CATTTGAATG
*
75928481 ATATCCGGGCTAAGACTCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
75928521 ATATCCGGGCTAAGACCCGAAGGCATTTGTGTG-GTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
** *
75928560 ATATCCAAGCTAAGATCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
75928600 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* *
75928640 ATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
75928680 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
75928720 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
75928741 AAACTTGGGT
Statistics
Matches: 197, Mismatches: 21, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
38 1 0.01
39 47 0.24
40 149 0.76
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:75928730 original size:119 final size:119
Alignment explanation
Indices: 75928481--75928740 Score: 371
Period size: 119 Copynumber: 2.2 Consensus size: 119
75928471 CATTTGAATG
*
75928481 ATATCCGGGCTAAGACTCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
** * * * * *
75928546 TTTGTGTGGTTGTTATATCCAAGCTAAGATCCGAAGGCATTTGTGCGAGTTGTT
66 TTTGTACGGTTGCTATATCCAAGCTAAGACCCGAAGGCAATTGGGCGAGTGGTT
75928600 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
* ** * *
75928665 TTTGTACGAGTTGCTATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
66 TTTGTACG-GTTGCTATATCCAAGCTAAGACCCGAAGGCAATTGGGCGAGTGGTT
75928720 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
75928741 AAACTTGGGT
Statistics
Matches: 126, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
118 1 0.01
119 83 0.66
120 42 0.33
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (119 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTACGGTTGCTATATCCAAGCTAAGACCCGAAGGCAATTGGGCGAGTGGTT
Found at i:75946278 original size:16 final size:16
Alignment explanation
Indices: 75946259--75946294 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
75946249 CTTCATTAAG
75946259 TTTTTAAGACTCATTT
1 TTTTTAAGACTCATTT
*
75946275 TTTTTAAGATTCATTT
1 TTTTTAAGACTCATTT
75946291 TTTT
1 TTTT
75946295 CCTTTTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.22, C:0.08, G:0.06, T:0.64
Consensus pattern (16 bp):
TTTTTAAGACTCATTT
Found at i:75952837 original size:2 final size:2
Alignment explanation
Indices: 75952830--75952857 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
75952820 AATATGTATG
75952830 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75952858 CCTAATAGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75953457 original size:26 final size:26
Alignment explanation
Indices: 75953434--75953486 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
75953424 CTTATTTTTT
* *
75953434 TCCTCATTTTTATCTATAACTTTTAA
1 TCCTCATTTTTATCAACAACTTTTAA
75953460 TCCTCATTTTTATCAACAACTTTTAA
1 TCCTCATTTTTATCAACAACTTTTAA
75953486 T
1 T
75953487 TTTCTTATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.00, T:0.51
Consensus pattern (26 bp):
TCCTCATTTTTATCAACAACTTTTAA
Found at i:75957468 original size:40 final size:40
Alignment explanation
Indices: 75957424--75957626 Score: 185
Period size: 40 Copynumber: 5.1 Consensus size: 40
75957414 GAAATTTAGT
* * * *
75957424 CGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACC
1 CGGATATAACTACTAGCACAAATGCCTTCGGGTCTTAGCC
*** *
75957464 CGGAT-TTGGTATCTTGCACAAATGCCTTCGGGTCTTAGCC
1 CGGATATAACTA-CTAGCACAAATGCCTTCGGGTCTTAGCC
* * * * *
75957504 CGGATATGACAACTTGCACGAATGCCTTCGAGTCTTAGCC
1 CGGATATAACTACTAGCACAAATGCCTTCGGGTCTTAGCC
* * *
75957544 CGGATATAATTACTAGCATAAATGCCTTCGGGACTTAGCC
1 CGGATATAACTACTAGCACAAATGCCTTCGGGTCTTAGCC
* * ** *
75957584 CGGATAT-ATTCACTAGCATAAATGCCTTCTAGACTTAGCC
1 CGGATATAACT-ACTAGCACAAATGCCTTCGGGTCTTAGCC
75957624 CGG
1 CGG
75957627 GTATCATTCA
Statistics
Matches: 136, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 5 0.04
40 129 0.95
41 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CGGATATAACTACTAGCACAAATGCCTTCGGGTCTTAGCC
Found at i:75958384 original size:2 final size:2
Alignment explanation
Indices: 75958377--75958401 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
75958367 ATGTGCAAAC
75958377 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
75958402 CATGCAAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:75961760 original size:22 final size:22
Alignment explanation
Indices: 75961734--75961778 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
75961724 ATTATGTGTA
75961734 TTAATTCATAATATAA-TTAATT
1 TTAATT-ATAATATAATTTAATT
* *
75961756 TTAATTTTAATCTAATTTAATT
1 TTAATTATAATATAATTTAATT
75961778 T
1 T
75961779 GGGTTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAATTATAATATAATTTAATT
Found at i:75965534 original size:24 final size:24
Alignment explanation
Indices: 75965507--75965630 Score: 167
Period size: 24 Copynumber: 5.2 Consensus size: 24
75965497 TAAACACGTG
* * *
75965507 ATTCTGTAAGTGCCATTATGGTGT
1 ATTCTGTAAGTGCCTTTGTGGCGT
* *
75965531 ATTCTGTAAGTTCCTTTGTGACGT
1 ATTCTGTAAGTGCCTTTGTGGCGT
* * *
75965555 ATTCTATAAGTACCTTTCTGGCGT
1 ATTCTGTAAGTGCCTTTGTGGCGT
*
75965579 ATTCTATAAGTGCCTTTGTGGCGT
1 ATTCTGTAAGTGCCTTTGTGGCGT
75965603 ATTCTGTAAGTGCCTTTGTGGCGT
1 ATTCTGTAAGTGCCTTTGTGGCGT
75965627 ATTC
1 ATTC
75965631 GGGAATGCCT
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 88 1.00
ACGTcount: A:0.18, C:0.17, G:0.23, T:0.43
Consensus pattern (24 bp):
ATTCTGTAAGTGCCTTTGTGGCGT
Found at i:75966991 original size:16 final size:16
Alignment explanation
Indices: 75966970--75967003 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
75966960 AGAAATAGAA
75966970 GGCATGAAAAGAGGAG
1 GGCATGAAAAGAGGAG
75966986 GGCATGAAAAGAGGAG
1 GGCATGAAAAGAGGAG
75967002 GG
1 GG
75967004 GCTGGACCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.41, C:0.06, G:0.47, T:0.06
Consensus pattern (16 bp):
GGCATGAAAAGAGGAG
Found at i:75986876 original size:40 final size:39
Alignment explanation
Indices: 75986716--75986909 Score: 244
Period size: 39 Copynumber: 4.9 Consensus size: 39
75986706 TGTGTATGAA
* *
75986716 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAA
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
75986755 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAA
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
75986794 TGTGCGAGATATGATATCCGGGCTAAGCCCGAAGGCGAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
75986833 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
* * * * *
75986873 TGTGCGGGTTATCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGC
75986910 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:75986937 original size:79 final size:78
Alignment explanation
Indices: 75986733--75986947 Score: 191
Period size: 78 Copynumber: 2.7 Consensus size: 78
75986723 ATTGTGATAT
* * ** * * * *
75986733 CCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAATGTG
1 CCGGGCTAAGCCCGAAGGCGATTGAACGAGTAGTGATATCCGAGTTAAGCCCGAAGGCAAATGTG
* *
75986798 CGAGATATGATAT
66 CGAGATATCATAA
** * * **
75986811 CCGGGCTAAGCCCGAAGGCGATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCGATTGAACGAGTAGTGATATCCGAGTTAAG-CCCGAAGGCAAATGT
* *
75986876 GCGGGTTATCATAA
65 GCGAGATATCATAA
* * *
75986890 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCC-AGTTAAACTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCGATTGAACGAGTAG-TGATATCCGAGTTAAGC-CCGAAGG
75986948 TATGTGATTT
Statistics
Matches: 116, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
78 46 0.40
79 44 0.38
80 25 0.22
81 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCGATTGAACGAGTAGTGATATCCGAGTTAAGCCCGAAGGCAAATGTG
CGAGATATCATAA
Found at i:76003303 original size:90 final size:90
Alignment explanation
Indices: 76003116--76003310 Score: 216
Period size: 90 Copynumber: 2.2 Consensus size: 90
76003106 GCTCCTTGTA
* * * *
76003116 CTTAAT-AAGTTCATAGCCCAGAGTTTGGGTGGTCATGTTAAGACGAACTTGATGAATTCACTAA
1 CTTAATGAA-TTCATAACCCAGAGTTTGGGTGGTCATATTAAGACGAACTTGATAAACTCACTAA
* *
76003180 ATTTATAAGATGAACTACTAGATGCT
65 ATTTATAAGATGAACCACTAAATGCT
* * * * * *
76003206 ATAAATGATTTCATAACCCAGGGTTTGGGTGGTCATATTAAGACGAACTTGATAAAC-CTATTGA
1 CTTAATGAATTCATAACCCAGAGTTTGGGTGGTCATATTAAGACGAACTTGATAAACTC-ACTAA
* *
76003270 ATTTATAGGAT-AAGCCACTAAATGTT
65 ATTTATAAGATGAA-CCACTAAATGCT
76003296 CTTAATGAATTCATA
1 CTTAATGAATTCATA
76003311 TCCTGTGCTT
Statistics
Matches: 85, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
89 3 0.04
90 81 0.95
91 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (90 bp):
CTTAATGAATTCATAACCCAGAGTTTGGGTGGTCATATTAAGACGAACTTGATAAACTCACTAAA
TTTATAAGATGAACCACTAAATGCT
Found at i:76008891 original size:23 final size:23
Alignment explanation
Indices: 76008838--76008918 Score: 83
Period size: 23 Copynumber: 3.6 Consensus size: 23
76008828 TAGCTCATAT
*
76008838 GAGCTTACCGTTTCATCTCTTCG
1 GAGCTTACCGTTTCATCTCTACG
* * * *
76008861 GGGATTACTGTTTTATCTCTACG
1 GAGCTTACCGTTTCATCTCTACG
* *
76008884 GAGCTTACCG-TTCAGCTCTTCG
1 GAGCTTACCGTTTCATCTCTACG
*
76008906 AAGCTTACCGTTT
1 GAGCTTACCGTTT
76008919 ATCAGCTCAG
Statistics
Matches: 45, Mismatches: 12, Indels: 2
0.76 0.20 0.03
Matches are distributed among these distances:
22 18 0.40
23 27 0.60
ACGTcount: A:0.16, C:0.26, G:0.20, T:0.38
Consensus pattern (23 bp):
GAGCTTACCGTTTCATCTCTACG
Found at i:76009107 original size:9 final size:9
Alignment explanation
Indices: 76009095--76009149 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
76009085 TAATAGCTAT
76009095 ATGAATTAC
1 ATGAATTAC
76009104 ATGAATT--
1 ATGAATTAC
76009111 AT-AAGTTAC
1 ATGAA-TTAC
*
76009120 ATGATTTAC
1 ATGAATTAC
*
76009129 ATGAATTAT
1 ATGAATTAC
*
76009138 ATGACTTAC
1 ATGAATTAC
76009147 ATG
1 ATG
76009150 GATAATATGA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
6 2 0.05
7 4 0.11
9 30 0.81
10 1 0.03
ACGTcount: A:0.40, C:0.09, G:0.13, T:0.38
Consensus pattern (9 bp):
ATGAATTAC
Found at i:76009146 original size:18 final size:18
Alignment explanation
Indices: 76009120--76009159 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
76009110 TATAAGTTAC
* *
76009120 ATGATTTACATGAATTAT
1 ATGACTTACATGAATAAT
*
76009138 ATGACTTACATGGATAAT
1 ATGACTTACATGAATAAT
76009156 ATGA
1 ATGA
76009160 TACATGAGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.40, C:0.07, G:0.15, T:0.38
Consensus pattern (18 bp):
ATGACTTACATGAATAAT
Found at i:76016600 original size:9 final size:9
Alignment explanation
Indices: 76016588--76016642 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
76016578 TAATAGCTAT
*
76016588 ATGATTTAC
1 ATGAATTAC
76016597 ATGAATT--
1 ATGAATTAC
76016604 AT-AAGTTAC
1 ATGAA-TTAC
*
76016613 ATGATTTAC
1 ATGAATTAC
*
76016622 ATGAATTAT
1 ATGAATTAC
76016631 ATGAATTAC
1 ATGAATTAC
76016640 ATG
1 ATG
76016643 GATAATATGA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
6 2 0.05
7 4 0.11
9 30 0.81
10 1 0.03
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (9 bp):
ATGAATTAC
Found at i:76016639 original size:18 final size:18
Alignment explanation
Indices: 76016613--76016652 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
76016603 TATAAGTTAC
* *
76016613 ATGATTTACATGAATTAT
1 ATGAATTACATGAATAAT
*
76016631 ATGAATTACATGGATAAT
1 ATGAATTACATGAATAAT
76016649 ATGA
1 ATGA
76016653 TACATGAGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.15, T:0.38
Consensus pattern (18 bp):
ATGAATTACATGAATAAT
Found at i:76021025 original size:46 final size:46
Alignment explanation
Indices: 76020953--76021180 Score: 332
Period size: 46 Copynumber: 5.0 Consensus size: 46
76020943 AGTGTGCTCT
*
76020953 CTGAAATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
76020999 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
76021045 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
76021091 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
76021137 ATGACA-GAAAACGAGTAAAACCATAGTTGAAAGATACTATGGCA
1 CTGACATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
76021181 TCATGTCGAA
Statistics
Matches: 170, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.01
46 169 0.99
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:76026498 original size:49 final size:48
Alignment explanation
Indices: 76026434--76026608 Score: 233
Period size: 49 Copynumber: 3.5 Consensus size: 48
76026424 CTGGTATGCA
76026434 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAAT-ATCTGGTACACG
* * * * * * *
76026483 TAGTAGCCTGTACTTAGTACTACACGTGTGATCACAATTTTTGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATATCT-GGTACACG
*
76026534 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAA-TATCTGGTACACG
76026583 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
76026609 CGTGACCTCA
Statistics
Matches: 107, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
49 63 0.59
50 6 0.06
51 38 0.36
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATATCTGGTACACG
Found at i:76026548 original size:100 final size:100
Alignment explanation
Indices: 76026426--76026607 Score: 328
Period size: 100 Copynumber: 1.8 Consensus size: 100
76026416 GAAGCTATCT
* *
76026426 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
*
76026491 TGTACTTAGTACTACACGTGTGATCACAATTTTTG
66 TGCACTTAGTACTACACGTGTGATCACAATTTTTG
*
76026526 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
76026591 TGCACTTAGTACTACAC
66 TGCACTTAGTACTACAC
76026608 ACGTGACCTC
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 78 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACGTGTGATCACAATTTTTG
Found at i:76030769 original size:26 final size:24
Alignment explanation
Indices: 76030724--76030775 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
76030714 TATTTATTTT
*
76030724 ATTTTAAATATTAATAATTATAAAA
1 ATTTTAAATATAAATAATTA-AAAA
76030749 ATTTTAAAATATCAAAT-ATTAAAAA
1 ATTTT-AAATAT-AAATAATTAAAAA
76030774 AT
1 AT
76030776 AAAGAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 11 0.46
26 10 0.42
27 3 0.12
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (24 bp):
ATTTTAAATATAAATAATTAAAAA
Found at i:76038005 original size:18 final size:18
Alignment explanation
Indices: 76037982--76038027 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
76037972 GAGTTAAACG
*
76037982 AATCGAATTATTCGAGTT
1 AATCGAATTATTCGAGTC
* *
76038000 AATCGAGTTATTTGAGTC
1 AATCGAATTATTCGAGTC
76038018 AACTCGAATT
1 AA-TCGAATT
76038028 TTTTTTTGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 17 0.74
19 6 0.26
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (18 bp):
AATCGAATTATTCGAGTC
Found at i:76038353 original size:30 final size:29
Alignment explanation
Indices: 76038304--76038360 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
76038294 AACTTTTTAT
* *
76038304 TTTCTCCCTAAAATTTTACTCCCTTCCAC
1 TTTCCCCCAAAAATTTTACTCCCTTCCAC
*
76038333 TTTCCCCCAAAAACTTTTACTTCCTTCC
1 TTTCCCCCAAAAA-TTTTACTCCCTTCC
76038361 TATCCCACGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.21, C:0.39, G:0.00, T:0.40
Consensus pattern (29 bp):
TTTCCCCCAAAAATTTTACTCCCTTCCAC
Found at i:76039010 original size:5 final size:5
Alignment explanation
Indices: 76039000--76039025 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
76038990 GAACAAATAT
76039000 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
76039026 ATTCCATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:76046194 original size:51 final size:51
Alignment explanation
Indices: 76046118--76046221 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
76046108 TAATGAGTAG
*
76046118 GACCATGGATGAAAGGCTCTATGGCATCATATGATAGTATGTCATGATGGC
1 GACCATGGATGAAAGGCTCTATGGCATCATATGATAGTACGTCATGATGGC
76046169 GACCATGGATGAAAGGCTCTATGGCATCATATGATAGTACGTCATGATGGC
1 GACCATGGATGAAAGGCTCTATGGCATCATATGATAGTACGTCATGATGGC
76046220 GA
1 GA
76046222 ATCAGTGTAA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (51 bp):
GACCATGGATGAAAGGCTCTATGGCATCATATGATAGTACGTCATGATGGC
Found at i:76046319 original size:33 final size:33
Alignment explanation
Indices: 76046263--76046357 Score: 95
Period size: 33 Copynumber: 2.9 Consensus size: 33
76046253 TGGCATCCAC
* *
76046263 AAAGATAGTCCGCTAGGGCAGTAAACATA-GAAA
1 AAAGATAGTCCACTAGGGCAGTAAACACATG-AA
* *
76046296 AAAGATAGTCCACT-GGGATAGTAAACACATGAC
1 AAAGATAGTCCACTAGGG-CAGTAAACACATGAA
* * *
76046329 AAAGATAGTCCACTAAGACAATAAACACA
1 AAAGATAGTCCACTAGGGCAGTAAACACA
76046358 AAACAGTCAG
Statistics
Matches: 51, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
32 3 0.06
33 46 0.90
34 2 0.04
ACGTcount: A:0.47, C:0.18, G:0.19, T:0.16
Consensus pattern (33 bp):
AAAGATAGTCCACTAGGGCAGTAAACACATGAA
Found at i:76046579 original size:22 final size:22
Alignment explanation
Indices: 76046553--76046596 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
76046543 ATACTGCCAG
76046553 GGCGACAAGTATGAGAACCACA
1 GGCGACAAGTATGAGAACCACA
76046575 GGCGACAAGTATGAGAACCACA
1 GGCGACAAGTATGAGAACCACA
76046597 CATGTAGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.23, G:0.27, T:0.09
Consensus pattern (22 bp):
GGCGACAAGTATGAGAACCACA
Found at i:76048701 original size:20 final size:20
Alignment explanation
Indices: 76048676--76048735 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
76048666 CACACACGTG
76048676 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
* * *
76048696 CCCCTGATTGTACATAC-GTG
1 CCCCTGTTTGTAC-TTCGGTA
*
76048716 CCCCTGTTTATACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
76048736 ATTTCAATCG
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
19 2 0.06
20 27 0.87
21 2 0.06
ACGTcount: A:0.15, C:0.30, G:0.18, T:0.37
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCGGTA
Found at i:76051840 original size:21 final size:21
Alignment explanation
Indices: 76051816--76051859 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
76051806 GAAAAATTAT
*
76051816 TAAAATATTTCTATT-TAAAAA
1 TAAAATATAT-TATTATAAAAA
*
76051837 TAAATTATATTATTATAAAAA
1 TAAAATATATTATTATAAAAA
76051858 TA
1 TA
76051860 TGTTTTTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
TAAAATATATTATTATAAAAA
Found at i:76060888 original size:6 final size:6
Alignment explanation
Indices: 76060879--76060918 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
76060869 ATGGAGATGG
76060879 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGT
1 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGT
76060919 GGGACATAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.33, C:0.15, G:0.35, T:0.17
Consensus pattern (6 bp):
AGGTCA
Found at i:76063710 original size:15 final size:15
Alignment explanation
Indices: 76063690--76063757 Score: 82
Period size: 16 Copynumber: 4.4 Consensus size: 15
76063680 TAAATAATTA
76063690 ATTTAACATTAAAAT
1 ATTTAACATTAAAAT
* *
76063705 ATTTAATATCAACAAT
1 ATTTAACATTAA-AAT
76063721 ATTTAACATTAAAAT
1 ATTTAACATTAAAAT
* *
76063736 ATTTAATATAAAAAAT
1 ATTTAACAT-TAAAAT
76063752 ATTTAA
1 ATTTAA
76063758 TAACATAAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
15 21 0.47
16 24 0.53
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (15 bp):
ATTTAACATTAAAAT
Found at i:76063723 original size:16 final size:16
Alignment explanation
Indices: 76063700--76063773 Score: 87
Period size: 16 Copynumber: 4.6 Consensus size: 16
76063690 ATTTAACATT
76063700 AAAATATTTAATATCA
1 AAAATATTTAATATCA
* * *
76063716 ACAATATTTAACAT-T
1 AAAATATTTAATATCA
*
76063731 AAAATATTTAATATAA
1 AAAATATTTAATATCA
*
76063747 AAAATATTTAATAACA
1 AAAATATTTAATATCA
76063763 TAAAATATTTA
1 -AAAATATTTA
76063774 TAAAATTATA
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
15 12 0.25
16 26 0.54
17 10 0.21
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (16 bp):
AAAATATTTAATATCA
Done.