Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 265 of 444
Found at i:76063725 original size:31 final size:31
Alignment explanation
Indices: 76063690--76063757 Score: 118
Period size: 31 Copynumber: 2.2 Consensus size: 31
76063680 TAAATAATTA
* *
76063690 ATTTAACATTAAAATATTTAATATCAACAAT
1 ATTTAACATTAAAATATTTAATATAAAAAAT
76063721 ATTTAACATTAAAATATTTAATATAAAAAAT
1 ATTTAACATTAAAATATTTAATATAAAAAAT
76063752 ATTTAA
1 ATTTAA
76063758 TAACATAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (31 bp):
ATTTAACATTAAAATATTTAATATAAAAAAT
Found at i:76063776 original size:16 final size:18
Alignment explanation
Indices: 76063693--76063790 Score: 81
Period size: 16 Copynumber: 5.9 Consensus size: 18
76063683 ATAATTAATT
76063693 TAACATTAAAATATTTAA
1 TAACATTAAAATATTTAA
* *
76063711 TATCA--ACAATA-TT--
1 TAACATTAAAATATTTAA
76063724 TAACATTAAAATATTTAA
1 TAACATTAAAATATTTAA
76063742 TATA-A--AAAATATTTAA
1 TA-ACATTAAAATATTTAA
76063758 TAACA-TAAAATATTT-A
1 TAACATTAAAATATTTAA
*
76063774 TAAAATTATAAATATTT
1 TAACATTA-AAATATTT
76063791 TTATAGAATT
Statistics
Matches: 65, Mismatches: 5, Indels: 20
0.72 0.06 0.22
Matches are distributed among these distances:
13 4 0.06
15 8 0.12
16 26 0.40
17 11 0.17
18 15 0.23
19 1 0.02
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (18 bp):
TAACATTAAAATATTTAA
Found at i:76063935 original size:34 final size:34
Alignment explanation
Indices: 76063871--76063936 Score: 80
Period size: 34 Copynumber: 1.9 Consensus size: 34
76063861 ATTCTTATGT
* * **
76063871 ATGTATTTTTATAACTTTTTTTTATTATTTTATC
1 ATGTATTTTTATAAATTTTTTTAAAAATTTTATC
76063905 ATGTATTTTT-TAAATTATTTTTAAAAATTTTA
1 ATGTATTTTTATAAATT-TTTTTAAAAATTTTA
76063937 ATTTTGCATG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 5 0.19
34 22 0.81
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (34 bp):
ATGTATTTTTATAAATTTTTTTAAAAATTTTATC
Found at i:76064133 original size:22 final size:22
Alignment explanation
Indices: 76064107--76064155 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
76064097 ACTTTATTTT
*
76064107 ATTTTGGTCACTTAGTTATT-A
1 ATTTTTGTCACTTAGTTATTGA
* * *
76064128 ATTTTTTTGATTTAGTTATTGA
1 ATTTTTGTCACTTAGTTATTGA
76064150 ATTTTT
1 ATTTTT
76064156 TAAAATTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.22, C:0.04, G:0.12, T:0.61
Consensus pattern (22 bp):
ATTTTTGTCACTTAGTTATTGA
Found at i:76064337 original size:19 final size:19
Alignment explanation
Indices: 76064300--76064337 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
76064290 CTGCTTTTCT
76064300 TTTCTTTTTTCTTTCACCAG
1 TTTCTTTTTTC-TTCACCAG
76064320 TTTCTTCTTTTC-TCACCA
1 TTTCTT-TTTTCTTCACCA
76064338 ACAAGACTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 6 0.35
21 5 0.29
ACGTcount: A:0.11, C:0.29, G:0.03, T:0.58
Consensus pattern (19 bp):
TTTCTTTTTTCTTCACCAG
Found at i:76071236 original size:27 final size:27
Alignment explanation
Indices: 76071135--76071274 Score: 183
Period size: 27 Copynumber: 5.2 Consensus size: 27
76071125 GAAAACTAAT
76071135 AACTGCCTTTGTGGTGTACTCTGAAAG
1 AACTGCCTTTGTGGTGTACTCTGAAAG
*
76071162 AATTGCCTTTGT-GTGTACTCTGAAAG
1 AACTGCCTTTGTGGTGTACTCTGAAAG
* * *** * *
76071188 AATTGCCTTGGTGACATTCTCTGAAGG
1 AACTGCCTTTGTGGTGTACTCTGAAAG
*
76071215 AACTGCCTTTGTGGTGTACTCTGAAAT
1 AACTGCCTTTGTGGTGTACTCTGAAAG
*
76071242 AATTGCCTTTGTGGTGTACTCTGAAAG
1 AACTGCCTTTGTGGTGTACTCTGAAAG
76071269 AACTGC
1 AACTGC
76071275 TTTTATGGAA
Statistics
Matches: 94, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
26 25 0.27
27 69 0.73
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (27 bp):
AACTGCCTTTGTGGTGTACTCTGAAAG
Found at i:76071305 original size:80 final size:80
Alignment explanation
Indices: 76071135--76071339 Score: 238
Period size: 80 Copynumber: 2.5 Consensus size: 80
76071125 GAAAACTAAT
* *
76071135 AACTGCCTTTGTGGTGTACTCTGAAAGAATTGCCTTTGTGTGTACTCTGAAAGAATTGCCTTGGT
1 AACTGCCTTTGTGGTGTACTCTGAAAGAATTGCCTTTGTGTGTACTCTGAAAGAACTGCCTTGAT
* * *
76071200 GACATTCTCTGAAGG
66 GAAAATCTCTAAAGG
* * *
76071215 AACTGCCTTTGTGGTGTACTCTGAAATAATTGCCTTTGTGGTGTACTCTGAAAGAACTGCTTTTA
1 AACTGCCTTTGTGGTGTACTCTGAAAGAATTGCCTTTGT-GTGTACTCTGAAAGAACTGCCTTGA
76071280 TGGAAAAATCT-TAAAGG
65 T-G-AAAATCTCTAAAGG
* **
76071297 AA-TG-CTTTGTGGTGTGA-TCTAAAAGAGGTGCCTTTGTTGTGTA
1 AACTGCCTTTGTGGTGT-ACTCTGAAAGAATTGCCTTTG-TGTGTA
76071340 TTTTGGGGGA
Statistics
Matches: 108, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
80 69 0.64
81 26 0.24
82 8 0.07
83 5 0.05
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.36
Consensus pattern (80 bp):
AACTGCCTTTGTGGTGTACTCTGAAAGAATTGCCTTTGTGTGTACTCTGAAAGAACTGCCTTGAT
GAAAATCTCTAAAGG
Found at i:76078017 original size:29 final size:29
Alignment explanation
Indices: 76077916--76078009 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
76077906 GTGACGAGAT
76077916 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
76077945 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
76077974 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
76078003 CGGCACT
1 TGGCACT
76078010 GGGTGTGCGA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:76078034 original size:58 final size:58
Alignment explanation
Indices: 76077912--76078046 Score: 175
Period size: 58 Copynumber: 2.3 Consensus size: 58
76077902 TACGGTGACG
* *
76077912 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
* **
76077969 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
76078027 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
76078047 GGGCTTAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 3 0.04
58 63 0.94
59 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.26
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:76078127 original size:2 final size:2
Alignment explanation
Indices: 76078122--76078146 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
76078112 TCTCTCTCTC
76078122 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
76078147 CTCCGATCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:76080193 original size:40 final size:40
Alignment explanation
Indices: 76080138--76080355 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
76080128 TGGTTGATAA
* * *
76080138 CCGGGCTAAGTCCCGAAGGCATTCGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TAT
* *
76080178 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
*
76080218 CCGGGCTAAGTCCCGAAGGCATTCGTGAGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
*
76080258 CCGGGCTATGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
76080298 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
76080338 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
76080356 TACTTGGCTT
Statistics
Matches: 162, Mismatches: 14, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
39 16 0.10
40 146 0.90
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:76088298 original size:40 final size:40
Alignment explanation
Indices: 76088243--76088500 Score: 378
Period size: 40 Copynumber: 6.5 Consensus size: 40
76088233 TGGATGATAA
* * *
76088243 CCGGGCTAAGTCCCGAAGGCATTCGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TAT
* *
76088283 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
76088323 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
*
76088363 CCGGGCTAAGTCCCGAAGGCATTCGTGAGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
*
76088403 CCGGGCTATGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
76088443 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
76088483 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
76088501 TACTTGGCTT
Statistics
Matches: 202, Mismatches: 14, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
39 16 0.08
40 186 0.92
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:76096260 original size:26 final size:26
Alignment explanation
Indices: 76096228--76096279 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
76096218 CATATTTGGC
76096228 CATAACAA-ATATAAATTCTAACATTT
1 CATAACAACATATAAATT-TAACATTT
*
76096254 CATAACAACGTATAAATTTAACATTT
1 CATAACAACATATAAATTTAACATTT
76096280 AATTACCATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.35
Consensus pattern (26 bp):
CATAACAACATATAAATTTAACATTT
Found at i:76103769 original size:28 final size:28
Alignment explanation
Indices: 76103721--76103789 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
76103711 ATTTAAACCC
*
76103721 TAGGGGT-ATATCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
76103748 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
76103776 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
76103790 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:76104441 original size:27 final size:27
Alignment explanation
Indices: 76104411--76104500 Score: 101
Period size: 27 Copynumber: 3.3 Consensus size: 27
76104401 GGGCAAAATG
*
76104411 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCAACAAGGGTATTTCA
* * *
76104438 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCAACAAGGGTATTTCA
* * *
76104465 GTAATTTT-TCAAACTAAGGGTATTTCG
1 GTAATTTTACCCAAC-AAGGGTATTTCA
76104492 GTAATTTTA
1 GTAATTTTA
76104501 GTAAACTAAA
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 3 0.06
27 49 0.94
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCAACAAGGGTATTTCA
Found at i:76107581 original size:28 final size:28
Alignment explanation
Indices: 76107533--76107601 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
76107523 ATTTAAACCC
*
76107533 TAGGGGT-ATATCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
76107560 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
76107588 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
76107602 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:76108249 original size:27 final size:27
Alignment explanation
Indices: 76108219--76108308 Score: 101
Period size: 27 Copynumber: 3.3 Consensus size: 27
76108209 GGGCAAAATG
*
76108219 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCAACAAGGGTATTTCA
* * *
76108246 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCAACAAGGGTATTTCA
* * *
76108273 GTAATTTT-TCAAACTAAGGGTATTTCG
1 GTAATTTTACCCAAC-AAGGGTATTTCA
76108300 GTAATTTTA
1 GTAATTTTA
76108309 GTAAACTAAA
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 3 0.06
27 49 0.94
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCAACAAGGGTATTTCA
Found at i:76111389 original size:28 final size:28
Alignment explanation
Indices: 76111341--76111409 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
76111331 ATTTAAACCC
*
76111341 TAGGGGT-ATATCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
76111368 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
76111396 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
76111410 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:76112053 original size:27 final size:27
Alignment explanation
Indices: 76112023--76112112 Score: 101
Period size: 27 Copynumber: 3.3 Consensus size: 27
76112013 GGGCAAAATG
*
76112023 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCAACAAGGGTATTTCA
* * *
76112050 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCAACAAGGGTATTTCA
* * *
76112077 GTAATTTT-TCAAACTAAGGGTATTTCG
1 GTAATTTTACCCAAC-AAGGGTATTTCA
76112104 GTAATTTTA
1 GTAATTTTA
76112113 GTAAACTAAA
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 3 0.06
27 49 0.94
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCAACAAGGGTATTTCA
Found at i:76117565 original size:46 final size:46
Alignment explanation
Indices: 76117498--76117631 Score: 137
Period size: 46 Copynumber: 2.9 Consensus size: 46
76117488 ATATATATAC
* * *
76117498 ATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATCT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * *
76117544 ATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATATAT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * * *
76117590 A-CAT-GTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 ATC-TCATACACA-TC-TCACATTAGCCATTCGGCCTTACCACA
76117632 CATACGCATG
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
45 6 0.08
46 43 0.59
47 24 0.33
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (46 bp):
ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
Found at i:76117773 original size:53 final size:47
Alignment explanation
Indices: 76117561--76117829 Score: 421
Period size: 47 Copynumber: 5.6 Consensus size: 47
76117551 ACACATTTCG
* * * **
76117561 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
76117608 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
76117655 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
76117702 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACA-T--T--CA-TCA
*
76117755 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
76117802 CATTGGCCATTCGGCCTTATCACGCATA
1 CATTGGCCATTCGGCCTTATCACACATA
76117830 TATATACAGG
Statistics
Matches: 209, Mismatches: 7, Indels: 12
0.92 0.03 0.05
Matches are distributed among these distances:
47 159 0.76
48 3 0.01
50 2 0.01
52 3 0.01
53 42 0.20
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:76125517 original size:42 final size:43
Alignment explanation
Indices: 76125446--76125549 Score: 138
Period size: 42 Copynumber: 2.4 Consensus size: 43
76125436 TAGCTCAACT
* *
76125446 ATGGTCTTATACGAAATCAAATAACGATGCCAATGTCCCAG-C
1 ATGGTCTTACACGTAATCAAATAACGATGCCAATGTCCCAGAC
** *
76125488 ATGGTCTTACACGTAATCGCATAATGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCAAATAACGATGCCAATGTCCCAGAC
* *
76125531 ATCGTCTTACACATAATCA
1 ATGGTCTTACACGTAATCA
76125550 CATTTCGTTA
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 36 0.68
43 17 0.32
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCAAATAACGATGCCAATGTCCCAGAC
Found at i:76128814 original size:14 final size:14
Alignment explanation
Indices: 76128795--76128821 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
76128785 TTTAACTCTG
76128795 TCAGAGCCATTCTA
1 TCAGAGCCATTCTA
76128809 TCAGAGCCATTCT
1 TCAGAGCCATTCT
76128822 GTACGGAGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.30
Consensus pattern (14 bp):
TCAGAGCCATTCTA
Found at i:76131079 original size:21 final size:20
Alignment explanation
Indices: 76131055--76131093 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
76131045 GAGTATTTTG
76131055 ATGTTTGATGATAGATTATGA
1 ATGTTTGATGATAG-TTATGA
76131076 ATGTTTGATGATAGTTAT
1 ATGTTTGATGATAGTTAT
76131094 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (20 bp):
ATGTTTGATGATAGTTATGA
Found at i:76131103 original size:21 final size:21
Alignment explanation
Indices: 76131055--76131101 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
76131045 GAGTATTTTG
*
76131055 ATGTTTGATGATAGATTATGA
1 ATGTTTGATGATAGATTATCA
76131076 ATGTTTGATGATAG-TTATACA
1 ATGTTTGATGATAGATTAT-CA
76131097 A-GTTT
1 ATGTTT
76131102 TGTTAAGTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.45
Consensus pattern (21 bp):
ATGTTTGATGATAGATTATCA
Found at i:76136602 original size:27 final size:27
Alignment explanation
Indices: 76136571--76136894 Score: 139
Period size: 27 Copynumber: 12.0 Consensus size: 27
76136561 TTAGTTTACC
*
76136571 AATTACAGAAATACCCTCGACTTGTAA
1 AATTACAGAAATACCCTCGATTTGTAA
* * *
76136598 AATTACCA-AAGTACCCTCGATTTATAG
1 AATTA-CAGAAATACCCTCGATTTGTAA
* *** **
76136625 AATCACTA-TTTTACCCTCGATTTACAA
1 AATTAC-AGAAATACCCTCGATTTGTAA
* ***
76136652 AATTACCGTTTTACCCTCGATTATG--A
1 AATTACAGAAATACCCTCGATT-TGTAA
* * * *
76136678 AATTACTGAAATACCC-CTATATGGTAG
1 AATTACAGAAATACCCTCGAT-TTGTAA
*
76136705 AATTACCA-AAATACCC-CTAGTTTGTAA
1 AATTA-CAGAAATACCCTCGA-TTTGTAA
* *
76136732 AATTACCA-AAATACCACT-GTTTTGTGA
1 AATTA-CAGAAATACC-CTCGATTTGTAA
* *
76136759 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACAGAAATACCCTCGATTTGTAA
**
76136786 AATTACCA-AAATACCC-CTGATTTACAA
1 AATTA-CAGAAATACCCTC-GATTTGTAA
* *
76136813 AATTACAGAAATACCCTTGACTTTCTAAA
1 AATTACAGAAATACCCTCGA-TTTGT-AA
* * * * **
76136842 AATTATAGAAATACCATTGGTTTACAA
1 AATTACAGAAATACCCTCGATTTGTAA
* * *
76136869 AATTACTGAAATACCCTTGGTTTGTA
1 AATTACAGAAATACCCTCGATTTGTA
76136895 GATTTACCAA
Statistics
Matches: 231, Mismatches: 47, Indels: 38
0.73 0.15 0.12
Matches are distributed among these distances:
25 4 0.02
26 21 0.09
27 174 0.75
28 13 0.06
29 19 0.08
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.32
Consensus pattern (27 bp):
AATTACAGAAATACCCTCGATTTGTAA
Found at i:76136815 original size:81 final size:81
Alignment explanation
Indices: 76136675--76136827 Score: 204
Period size: 81 Copynumber: 1.9 Consensus size: 81
76136665 CCCTCGATTA
* * * **
76136675 TGAAATTACTGAAATACCCCTATATGGTAGAATTACCAAAATACCCCTAGTTTGTAAAATTACCA
1 TGAAATTACCGAAATACCCCAATATGGTAAAATTACCAAAATACCCCTAGTTTACAAAATTA-CA
76136740 -AAATACCACTGTTTTG
65 GAAATACCACTGTTTTG
*
76136756 TGAAATTACCGAAATACCCTCAAT-TTGTAAAATTACCAAAATACCCCT-GATTTACAAAATTAC
1 TGAAATTACCGAAATACCC-CAATATGGTAAAATTACCAAAATACCCCTAG-TTTACAAAATTAC
76136819 AGAAATACC
64 AGAAATACC
76136828 CTTGACTTTC
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
80 3 0.05
81 57 0.90
82 3 0.05
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (81 bp):
TGAAATTACCGAAATACCCCAATATGGTAAAATTACCAAAATACCCCTAGTTTACAAAATTACAG
AAATACCACTGTTTTG
Found at i:76136816 original size:54 final size:54
Alignment explanation
Indices: 76136705--76136885 Score: 177
Period size: 54 Copynumber: 3.3 Consensus size: 54
76136695 TATATGGTAG
* * * ***
76136705 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCACTGTTTTGTGA
1 AATTACCGAAATACCCTC-AATTTGTAAAATTACCAAAATACCACTGATTTACAA
*
76136759 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAA
1 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTGATTTACAA
* * * * * * *
76136813 AATTACAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAA
1 AATTACCGAAATACCC-TCAATTTGT-AAAATTACCA-AAATACCACTGATTTACAA
*
76136869 AATTACTGAAATACCCT
1 AATTACCGAAATACCCT
76136886 TGGTTTGTAG
Statistics
Matches: 107, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
54 60 0.56
55 9 0.08
56 38 0.36
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (54 bp):
AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTGATTTACAA
Found at i:76136975 original size:27 final size:27
Alignment explanation
Indices: 76136932--76137005 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 27
76136922 AAATGACTAA
*
76136932 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
76136959 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
*
76136986 AATACCCCTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
76137006 TGATGAATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
26 3 0.08
27 35 0.90
28 1 0.03
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:76137857 original size:25 final size:25
Alignment explanation
Indices: 76137819--76137888 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
76137809 AGGAAGTGCT
* *
76137819 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
76137844 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
76137869 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
76137889 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:76137901 original size:24 final size:24
Alignment explanation
Indices: 76137818--76137901 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
76137808 GAGGAAGTGC
* *
76137818 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
76137843 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
76137867 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTTTGCCCCAGTTTAT
76137891 TAAAAGAGGCT
1 TAAAAG-GGCT
76137902 AGGCCTCCAA
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 5 0.10
24 8 0.15
25 39 0.75
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:76138159 original size:31 final size:31
Alignment explanation
Indices: 76138108--76138185 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
76138098 CGCTTACAGT
*
76138108 AAAGGCTTCGG-CTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
76138138 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
76138169 AAAGGCTTTGGCTCAGT
1 AAAGGCTTCGGCCCAGT
76138186 ACATGTCGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 11 0.25
31 33 0.75
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:76141304 original size:28 final size:28
Alignment explanation
Indices: 76141272--76141325 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
76141262 AAATATTAAA
76141272 AATATTAATATAAA-ATAT-TATATTTTTT
1 AATATT-AT-TAAACATATATATATTTTTT
76141300 AATATTATTAAACATATATATATTTT
1 AATATTATTAAACATATATATATTTT
76141326 ATTATTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 4 0.17
27 6 0.25
28 14 0.58
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (28 bp):
AATATTATTAAACATATATATATTTTTT
Found at i:76141319 original size:26 final size:28
Alignment explanation
Indices: 76141272--76141336 Score: 73
Period size: 26 Copynumber: 2.4 Consensus size: 28
76141262 AAATATTAAA
*
76141272 AATATTAATATAAAATATTATATTTTTT
1 AATATTAATATAAAATATTATATATTTT
76141300 AATATT-AT-TAAACATA-TATATATTTT
1 AATATTAATATAAA-ATATTATATATTTT
* *
76141326 ATTATTTATAT
1 AATATTAATAT
76141337 TTAGTCATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
26 18 0.56
27 7 0.22
28 7 0.22
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (28 bp):
AATATTAATATAAAATATTATATATTTT
Found at i:76141494 original size:15 final size:15
Alignment explanation
Indices: 76141474--76141530 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
76141464 ATTCAATATT
76141474 AATATTTTAATAATA
1 AATATTTTAATAATA
*
76141489 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
76141508 AATATATTAATAATA
1 AATATTTTAATAATA
*
76141523 AATGTTTT
1 AATATTTT
76141531 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:76141853 original size:25 final size:25
Alignment explanation
Indices: 76141825--76141902 Score: 70
Period size: 25 Copynumber: 3.2 Consensus size: 25
76141815 TAAAGATAAA
*
76141825 ATAAATTCGATTAAACAATGAAAAT
1 ATAAATTCAATTAAACAATGAAAAT
** ** * *
76141850 AT-AATAAAATTTTATAAAGATAAA-
1 ATAAATTCAATTAAACAATGA-AAAT
76141874 ATAAATTCAATTAAACAATGAAAAT
1 ATAAATTCAATTAAACAATGAAAAT
76141899 ATAA
1 ATAA
76141903 GAAAATCTCA
Statistics
Matches: 37, Mismatches: 13, Indels: 6
0.66 0.23 0.11
Matches are distributed among these distances:
24 16 0.43
25 21 0.57
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.29
Consensus pattern (25 bp):
ATAAATTCAATTAAACAATGAAAAT
Found at i:76141868 original size:49 final size:49
Alignment explanation
Indices: 76141792--76141908 Score: 179
Period size: 49 Copynumber: 2.5 Consensus size: 49
76141782 ATATATGCAA
* *
76141792 AAACAATGTAAA-AT-AT-AAA-TTTATAAAGATAAAATAAATTCGATT
1 AAACAATGAAAATATAATAAAATTTTATAAAGATAAAATAAATTCAATT
76141837 AAACAATGAAAATATAATAAAATTTTATAAAGATAAAATAAATTCAATT
1 AAACAATGAAAATATAATAAAATTTTATAAAGATAAAATAAATTCAATT
*
76141886 AAACAATGAAAATATAAGAAAAT
1 AAACAATGAAAATATAATAAAAT
76141909 CTCAAATGTA
Statistics
Matches: 65, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
45 11 0.17
46 2 0.03
47 2 0.03
48 3 0.05
49 47 0.72
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.28
Consensus pattern (49 bp):
AAACAATGAAAATATAATAAAATTTTATAAAGATAAAATAAATTCAATT
Found at i:76142056 original size:14 final size:14
Alignment explanation
Indices: 76142037--76142066 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
76142027 TCAGGAAAGT
76142037 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
76142051 AAATCATTTTTCAG
1 AAATCATTTTCCAG
76142065 AA
1 AA
76142067 GCCATTTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.37
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:76147851 original size:27 final size:27
Alignment explanation
Indices: 76147457--76147844 Score: 517
Period size: 27 Copynumber: 14.4 Consensus size: 27
76147447 CCCCAAAATA
* ** *
76147457 GGTAAAATGATCGTAATAACCCTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
76147484 GGTAAAATGACTGTAATGACCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
76147511 GGTAAAATGACCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * *
76147538 GATAAAATGACCGTAATACCCATGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * *
76147565 TGTAAAATGACCGTAATGCCCCTATTG
1 GGTAAAATGACCGTAATGCCCCTGTAG
** *
76147592 GGTAAAATGATTGTAATGCCCTTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
76147619 GGTAAAATGACCGTAATGCCCTTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
76147646 GGTAAAATGATCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
76147673 GGTAAAATGACCGTAATGACCTTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
76147700 GGTAAAATGACCGTAATGACCCTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
76147727 GGTAAAATGACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
76147754 GGTAAAAT-ACCGTAGTGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
76147780 GATAAAATGACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
76147807 GGTAAAATGACCGTAATGGCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
76147834 GATAAAATGAC
1 GGTAAAATGAC
76147845 TATAATGACT
Statistics
Matches: 318, Mismatches: 42, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
26 23 0.07
27 295 0.93
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTGTAG
Found at i:76147859 original size:36 final size:36
Alignment explanation
Indices: 76147812--76147880 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 36
76147802 TGTAGGGTAA
*
76147812 AATGACCGTAATGGCCCTGTAGGATAAAATGACTAT
1 AATGACCGTAATGCCCCTGTAGGATAAAATGACTAT
* *
76147848 AATGACTGTAATGCCCCTGTAGGGTAAAATGAC
1 AATGACCGTAATGCCCCTGTAGGATAAAATGAC
76147881 GATTATGCCC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (36 bp):
AATGACCGTAATGCCCCTGTAGGATAAAATGACTAT
Found at i:76154187 original size:52 final size:52
Alignment explanation
Indices: 76154130--76154233 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 52
76154120 ATTGAGAGAA
*
76154130 TATTTTGAGAATGAAAATGGTTTGATTTATTCTCTGATGATAGATCTTTAAG
1 TATTTTGAGAATGAAAACGGTTTGATTTATTCTCTGATGATAGATCTTTAAG
*
76154182 TATTTTGAGAATGAAAACGGTTTGATTTATTCTTTGATGATAGATCTTTAAG
1 TATTTTGAGAATGAAAACGGTTTGATTTATTCTCTGATGATAGATCTTTAAG
76154234 AACATGCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (52 bp):
TATTTTGAGAATGAAAACGGTTTGATTTATTCTCTGATGATAGATCTTTAAG
Found at i:76156308 original size:25 final size:25
Alignment explanation
Indices: 76156279--76156371 Score: 114
Period size: 25 Copynumber: 3.7 Consensus size: 25
76156269 TTCCGACCCA
*
76156279 CAGCTTGTGTGAGCATACCGATTTG
1 CAGCTCGTGTGAGCATACCGATTTG
* * * *
76156304 TAGCTCGTGAGAGCATACCGATCTA
1 CAGCTCGTGTGAGCATACCGATTTG
*
76156329 CAGCTCGAGTGAGCATACCGATTTG
1 CAGCTCGTGTGAGCATACCGATTTG
* *
76156354 CAGCTCGTATTAGCATAC
1 CAGCTCGTGTGAGCATAC
76156372 ATGTACATGA
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 55 1.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (25 bp):
CAGCTCGTGTGAGCATACCGATTTG
Found at i:76158397 original size:40 final size:40
Alignment explanation
Indices: 76158342--76158549 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 40
76158332 TGAATGATAC
* * *
76158342 CCGGGCTAAGTCCCGAAGGCATTTATGCTCGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
76158382 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
76158422 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * ** *
76158462 CCGGGCTAAGACCCAAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
76158502 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
76158542 CC-GGCTAA
1 CCGGGCTAA
76158550 ATTCCAAAGA
Statistics
Matches: 143, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 6 0.04
40 135 0.94
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:76161396 original size:40 final size:40
Alignment explanation
Indices: 76161327--76161503 Score: 236
Period size: 40 Copynumber: 4.5 Consensus size: 40
76161317 AAGCCAAGTA
* * *
76161327 CCTTCGGGATTTA-ACC-GATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACGAATG
* *
76161365 CCTTCGGGACATAGCCTGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
76161405 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* * *
76161445 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCGAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACGAATG
76161485 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
76161504 TTATCAACGA
Statistics
Matches: 125, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
38 11 0.09
39 3 0.02
40 111 0.89
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
Found at i:76169522 original size:40 final size:40
Alignment explanation
Indices: 76169398--76169676 Score: 403
Period size: 40 Copynumber: 7.1 Consensus size: 40
76169388 CGAGATTTAA
*
76169398 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGA-TATAGC
1 CCGGATATAG-TAACTCGCACGAATGCCTTCGGGACT-TAGC
76169438 CC-GATATAGTAACTCGCACGAATGCCTTC--GACTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
76169475 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
76169515 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
* *
76169555 CCGGATATAGTAACTCGCGCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
* *
76169595 CCGAATATAGTAACTCGCACAAATGCCTTCGGGAC-TAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
* * *
76169634 CCGGA-ACTAGTCACTAGCGC-AATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACGAATGCCTTCGGGACTTAGC
76169673 CCGG
1 CCGG
76169677 TTATCAACCA
Statistics
Matches: 223, Mismatches: 9, Indels: 15
0.90 0.04 0.06
Matches are distributed among these distances:
37 8 0.04
38 44 0.20
39 50 0.22
40 121 0.54
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
Found at i:76174879 original size:9 final size:9
Alignment explanation
Indices: 76174865--76174895 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
76174855 ATTGGCCCAC
*
76174865 CATTTGGAA
1 CATTTGAAA
76174874 CATTTGAAA
1 CATTTGAAA
76174883 CATTTGAAA
1 CATTTGAAA
76174892 CATT
1 CATT
76174896 ACTGGTTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (9 bp):
CATTTGAAA
Found at i:76175126 original size:11 final size:11
Alignment explanation
Indices: 76175078--76175133 Score: 51
Period size: 11 Copynumber: 4.9 Consensus size: 11
76175068 AAGGTCCATC
76175078 TTGAATTGTCT
1 TTGAATTGTCT
* *
76175089 TTGAGTTGTTCG
1 TTGAATTG-TCT
*
76175101 TTCACATCT-TCT
1 TTGA-AT-TGTCT
76175113 TTGAATTGTCT
1 TTGAATTGTCT
76175124 TTGAATTGTC
1 TTGAATTGTC
76175134 ATAAACACTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
10 1 0.03
11 22 0.63
12 10 0.29
13 1 0.03
14 1 0.03
ACGTcount: A:0.16, C:0.14, G:0.18, T:0.52
Consensus pattern (11 bp):
TTGAATTGTCT
Found at i:76179420 original size:31 final size:31
Alignment explanation
Indices: 76179379--76179464 Score: 113
Period size: 31 Copynumber: 2.8 Consensus size: 31
76179369 TCAATCTCAG
*
76179379 CATAT-ACTGGGCCAAAGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
*
76179409 CATATCACTGGGCCGAAGCCTCTT-TATTATT
1 CATATCACTGGGCCGAAGCCT-TTACATTATT
* *
76179440 CATATCACTAGGCTGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
76179465 TGTAAATGGT
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
30 7 0.15
31 39 0.81
32 2 0.04
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.33
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:76179770 original size:2 final size:2
Alignment explanation
Indices: 76179763--76179790 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
76179753 CAACCCATGC
76179763 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76179791 CATGGCATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76179800 original size:10 final size:10
Alignment explanation
Indices: 76179787--76179831 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
76179777 ATATATATAT
76179787 ATATCATGGC
1 ATATCATGGC
*
76179797 ATATCATGTAC
1 ATATCATG-GC
76179808 ATATCATGGC
1 ATATCATGGC
* *
76179818 ATATTATAGC
1 ATATCATGGC
76179828 ATAT
1 ATAT
76179832 TATGTACAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
10 21 0.70
11 9 0.30
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.36
Consensus pattern (10 bp):
ATATCATGGC
Found at i:76194171 original size:40 final size:40
Alignment explanation
Indices: 76194063--76194347 Score: 420
Period size: 40 Copynumber: 7.2 Consensus size: 40
76194053 CGGGATTTAA
* * * * *
76194063 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
76194103 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76194143 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76194183 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76194223 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76194263 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAG-
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76194302 CCGG--ATA-CAACTCGCACGAATGCCTTC-GGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76194338 CCGGATATAT
1 CCGGATATAT
76194348 TCCAATGTTC
Statistics
Matches: 224, Mismatches: 15, Indels: 13
0.89 0.06 0.05
Matches are distributed among these distances:
35 8 0.04
36 24 0.11
37 3 0.01
38 3 0.01
39 5 0.02
40 181 0.81
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:76198872 original size:28 final size:28
Alignment explanation
Indices: 76198840--76198896 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
76198830 CATGTAATTT
76198840 ACTAAATCGAAGCTTAAAACTTTCACAC
1 ACTAAATCGAAGCTTAAAACTTTCACAC
76198868 ACTAAATCGAAGCTTAAAACTTTCACAC
1 ACTAAATCGAAGCTTAAAACTTTCACAC
76198896 A
1 A
76198897 TTCATAATCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.44, C:0.25, G:0.07, T:0.25
Consensus pattern (28 bp):
ACTAAATCGAAGCTTAAAACTTTCACAC
Found at i:76204085 original size:17 final size:18
Alignment explanation
Indices: 76204059--76204092 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
76204049 TTTTTGTTTA
76204059 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
76204076 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
76204093 ATATTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:76204706 original size:24 final size:25
Alignment explanation
Indices: 76204677--76204733 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
76204667 TTTTCTCCTA
*
76204677 AATTTTAATTTTATTCAATTATT-T
1 AATTTTAAGTTTATTCAATTATTAT
* *
76204701 AATTTTTCAGTTTATTGAATTATTAAT
1 AA-TTTTAAGTTTATTCAATTATT-AT
76204728 AATTTT
1 AATTTT
76204734 TGTGAATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
24 2 0.07
25 18 0.67
26 4 0.15
27 3 0.11
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.60
Consensus pattern (25 bp):
AATTTTAAGTTTATTCAATTATTAT
Found at i:76205662 original size:13 final size:13
Alignment explanation
Indices: 76205644--76205668 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76205634 CCAAGCACAC
76205644 GCCCGTGTCCTTG
1 GCCCGTGTCCTTG
76205657 GCCCGTGTCCTT
1 GCCCGTGTCCTT
76205669 TACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.40, G:0.28, T:0.32
Consensus pattern (13 bp):
GCCCGTGTCCTTG
Found at i:76209413 original size:22 final size:22
Alignment explanation
Indices: 76209388--76209432 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
76209378 CTGGATATTC
76209388 ACATACTATTGGTATGGACTCA
1 ACATACTATTGGTATGGACTCA
76209410 ACATACTATTGGTATGGACTCA
1 ACATACTATTGGTATGGACTCA
76209432 A
1 A
76209433 TCTTCAACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (22 bp):
ACATACTATTGGTATGGACTCA
Found at i:76211934 original size:19 final size:20
Alignment explanation
Indices: 76211904--76211942 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
76211894 CATTCTGACA
76211904 TAGTATTTTTAGGTACAGGT
1 TAGTATTTTTAGGTACAGGT
*
76211924 TAGTA-TTTTAGGTGCAGGT
1 TAGTATTTTTAGGTACAGGT
76211943 GACACACGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.23, C:0.05, G:0.28, T:0.44
Consensus pattern (20 bp):
TAGTATTTTTAGGTACAGGT
Found at i:76220637 original size:37 final size:37
Alignment explanation
Indices: 76220578--76220723 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
76220568 AGCTCAGACG
* *
76220578 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
76220615 AAATCTCTACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
76220652 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
76220689 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
76220724 ATATATTTCT
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:76221042 original size:47 final size:47
Alignment explanation
Indices: 76220926--76221072 Score: 204
Period size: 47 Copynumber: 3.1 Consensus size: 47
76220916 CATACATATT
* * * *
76220926 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
76220973 CCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * **
76221020 TCACATTGGCCATTCGGCCTTATCTCGTATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
76221067 TCACAT
1 TCACAT
76221073 AAAATCCTAA
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 89 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:76224764 original size:25 final size:25
Alignment explanation
Indices: 76224727--76224778 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
76224717 AAGGAATTCG
76224727 CACACACACAGTGC-CTCTAATCATT
1 CACACACACAGTGCTCT-TAATCATT
* *
76224752 CACACACATAGTGCTCTTATTCATT
1 CACACACACAGTGCTCTTAATCATT
76224777 CA
1 CA
76224779 TTATTACACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.29
Consensus pattern (25 bp):
CACACACACAGTGCTCTTAATCATT
Found at i:76224962 original size:40 final size:40
Alignment explanation
Indices: 76224930--76225321 Score: 570
Period size: 40 Copynumber: 9.8 Consensus size: 40
76224920 CCAGCATGAT
* * * * *
76224930 TGCTCTTTGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
76224970 TGCTCTTCAGGG-TTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTC-GGGACTTAGCCCGGATACATCACTAGCACGAA
*
76225010 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
76225050 TGCTCTTCGGGACTTAGTCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
76225090 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* **
76225130 TGCTCTTCGGGACTTAGTCTAGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
76225170 TGCTCCTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
76225210 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
76225250 TGCTCTTCGGGACTTAGCCCGGATATATCACTAACACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
76225290 TGCTCTTCGGGACTCAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
76225322 CTCAATTTTC
Statistics
Matches: 320, Mismatches: 30, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
39 2 0.01
40 315 0.98
41 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:76226640 original size:37 final size:37
Alignment explanation
Indices: 76226548--76226691 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
76226538 GCTCAGACGA
* * *
76226548 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
76226585 AATCT-CACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
76226621 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
76226658 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
76226692 ATATATTTCA
Statistics
Matches: 103, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
36 33 0.32
37 70 0.68
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:76226642 original size:73 final size:74
Alignment explanation
Indices: 76226548--76226691 Score: 254
Period size: 73 Copynumber: 2.0 Consensus size: 74
76226538 GCTCAGACGA
*
76226548 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAAAATCT-CACACGTAGTCATCGGGTCTTA
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTA
76226612 CCCGGACAT
66 CCCGGACAT
* *
76226621 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCATCGGGTCTTA
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTA
76226686 CCCGGA
66 CCCGGA
76226692 ATATATTTCA
Statistics
Matches: 67, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
73 39 0.58
74 28 0.42
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (74 bp):
AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTA
CCCGGACAT
Found at i:76226963 original size:47 final size:47
Alignment explanation
Indices: 76226893--76227086 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
76226883 CATACATATT
* * *
76226893 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATGTTCACATTCA
* * *
76226940 CCACATTGGCCATTCGGCCTTACCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATGTTCACATTCA
*
76226987 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATGTTCACATTCA
* * * **
76227034 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATGTTCACATTCA
76227081 TCACAT
1 TCACAT
76227087 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTACCACATATATGCATGTTCACATTCA
Found at i:76227012 original size:22 final size:22
Alignment explanation
Indices: 76226986--76227057 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
76226976 GCTCACATTC
76226986 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
76227008 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
76227032 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
76227055 ATC
1 ATC
76227058 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:76240370 original size:28 final size:28
Alignment explanation
Indices: 76240305--76240376 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 28
76240295 ATAGTGAATC
* *
76240305 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATAGA-TATCAGCT
76240334 CGCACACTTAGTGCTATAGA-ATCAAGCT
1 CGCACACTTAGTGCTATAGATATC-AGCT
76240362 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76240377 GTACAATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.47
29 19 0.47
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAGATATCAGCT
Found at i:76248270 original size:28 final size:28
Alignment explanation
Indices: 76248205--76248276 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 28
76248195 ATAGTGAATC
* *
76248205 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATAGA-TATCAGCT
76248234 CGCACACTTAGTGCTATAGA-ATCAAGCT
1 CGCACACTTAGTGCTATAGATATC-AGCT
76248262 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76248277 GTACAATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.47
29 19 0.47
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAGATATCAGCT
Found at i:76252844 original size:48 final size:48
Alignment explanation
Indices: 76252753--76252975 Score: 218
Period size: 48 Copynumber: 4.6 Consensus size: 48
76252743 TGTGCTAGTA
* * *
76252753 TAAGACCATGTCTGGGGCATAGCATCGGCCACATTATGAGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCTCATTATGAGAGCCAGTG
* * * * *
76252801 TAGGACCATGTCTGGGACATGGCATCAGCCTCAATATGCGAGCCAGTA
1 TAAGACCATGTCTGGGACATGGCATCGGCCTCATTATGAGAGCCAGTG
* * ** * **
76252849 TAAGACCATGTTTGGAACATGGCATC-GCCATTGTTAT-ATGTGTTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCC-TCATTATGA-GAGCCAGTG
76252897 TAAGACCATGTCTGGGACATGGCATCGGCAC-CGATGTATGAGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGC-CTC-AT-TATGAGAGCCAGTG
* * *
76252947 TAAGACCATGCCTGAGACATGACATCGGC
1 TAAGACCATGTCTGGGACATGGCATCGGC
76252976 ATTTTACCCT
Statistics
Matches: 139, Mismatches: 29, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
47 3 0.02
48 96 0.69
49 3 0.02
50 36 0.26
51 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCCTCATTATGAGAGCCAGTG
Found at i:76257393 original size:21 final size:22
Alignment explanation
Indices: 76257363--76257403 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
76257353 GAGTTGGGTC
* *
76257363 AAAATGAATTTGAGG-GTCCAA
1 AAAATAAATTGGAGGCGTCCAA
76257384 AAAATAAATTGGAGGCGTCC
1 AAAATAAATTGGAGGCGTCC
76257404 CATACTGAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.22
Consensus pattern (22 bp):
AAAATAAATTGGAGGCGTCCAA
Found at i:76265512 original size:40 final size:40
Alignment explanation
Indices: 76265441--76265667 Score: 352
Period size: 40 Copynumber: 5.7 Consensus size: 40
76265431 GCTACTTGCT
*
76265441 CAAATGCCTTCGGGAC-TAGCCCGGTCATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
76265480 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
76265520 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
76265560 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
76265600 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
76265639 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
76265668 CATCCAAATA
Statistics
Matches: 172, Mismatches: 12, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
38 1 0.01
39 49 0.28
40 121 0.70
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:76265640 original size:119 final size:119
Alignment explanation
Indices: 76265441--76265667 Score: 354
Period size: 119 Copynumber: 1.9 Consensus size: 119
76265431 GCTACTTGCT
*
76265441 CAAATGCCTTCGGGACTAGCCCGGTCATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
1 CAAATGCCTTCGGGACTAGCCCGGTCATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
76265506 TATAGTAGCTCGCACAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCA
66 TATAGTAGCTAGCACAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCA
*
76265560 CAAATGCCTTCGGGACTTAGCCCGGAT-ATAGTAGCTCGCACAAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGAC-TAGCCCGG-TCATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
76265623 GA-ATTAGTCA-CTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
64 GATA-TAGT-AGCTAGCACAAATGCCTTCAGGACTTAGCCCGGTTAT
76265668 CATCCAAATA
Statistics
Matches: 100, Mismatches: 4, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
118 1 0.01
119 63 0.63
120 35 0.35
121 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (119 bp):
CAAATGCCTTCGGGACTAGCCCGGTCATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
TATAGTAGCTAGCACAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:76267765 original size:29 final size:29
Alignment explanation
Indices: 76267733--76267809 Score: 118
Period size: 29 Copynumber: 2.7 Consensus size: 29
76267723 AATCATACTC
*
76267733 ATATTGCCCATTAGGCCCAAATCACCTGT
1 ATATGGCCCATTAGGCCCAAATCACCTGT
* *
76267762 ATATGGCCCATTAGGACCAAATCACCTTT
1 ATATGGCCCATTAGGCCCAAATCACCTGT
*
76267791 ATATGGCCCGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
76267810 GTCACATTCA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACCTGT
Found at i:76268057 original size:16 final size:16
Alignment explanation
Indices: 76268032--76268074 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
76268022 GTAGCCAAAC
*
76268032 TTTCGACTTTTC-AGCA
1 TTTCGGCTTTTCGA-CA
*
76268048 TTTCTGCTTTTCGACA
1 TTTCGGCTTTTCGACA
76268064 TTTCGGCTTTT
1 TTTCGGCTTTT
76268075 GCCGATACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 22 0.96
17 1 0.04
ACGTcount: A:0.12, C:0.23, G:0.14, T:0.51
Consensus pattern (16 bp):
TTTCGGCTTTTCGACA
Found at i:76269198 original size:16 final size:16
Alignment explanation
Indices: 76269177--76269209 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
76269167 AAAAGTTCAA
*
76269177 GATTTTGGGATTTTTG
1 GATTTTAGGATTTTTG
76269193 GATTTTAGGATTTTTG
1 GATTTTAGGATTTTTG
76269209 G
1 G
76269210 GGCGTTACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.00, G:0.30, T:0.55
Consensus pattern (16 bp):
GATTTTAGGATTTTTG
Found at i:76272891 original size:43 final size:43
Alignment explanation
Indices: 76272814--76272937 Score: 128
Period size: 43 Copynumber: 2.9 Consensus size: 43
76272804 AGTACAATAT
* * * *
76272814 CAACGTCCTAGACGTGGTCTTACATGTA-ATCACATATCAATGC
1 CAACGTCCCAGACGTGGTCTTAAACG-AGAACACATATCAATGC
* * * *
76272857 C-ACTGTCCCATACAG-GGTTTTACACGAGAACACATGTCAATGC
1 CAAC-GTCCCAGAC-GTGGTCTTAAACGAGAACACATATCAATGC
76272900 CAACGTCCCAGACGTGGTCTTAAACGAGAACACATATC
1 CAACGTCCCAGACGTGGTCTTAAACGAGAACACATATC
76272938 GAAAATCCTA
Statistics
Matches: 66, Mismatches: 10, Indels: 10
0.77 0.12 0.12
Matches are distributed among these distances:
42 4 0.06
43 59 0.89
44 3 0.05
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (43 bp):
CAACGTCCCAGACGTGGTCTTAAACGAGAACACATATCAATGC
Found at i:76279067 original size:46 final size:46
Alignment explanation
Indices: 76278995--76279146 Score: 193
Period size: 46 Copynumber: 3.4 Consensus size: 46
76278985 GCTAATTATG
*
76278995 TGCACTTAGTGTGCGAAATCGAGATAGCTTCGGCTATATATATTTT
1 TGCACTTAGTGTGCGAGATCGAGATAGCTTCGGCTATATATATTTT
* * *
76279041 TGCATTTAGTGTGCGAGATCAAGATAGCTTCGGCTATATATATATT
1 TGCACTTAGTGTGCGAGATCGAGATAGCTTCGGCTATATATATTTT
* * * * *
76279087 GGCACTTAGTGTGCAAGATTGATACAGCTTCGGCTAT-T-TA-TTT
1 TGCACTTAGTGTGCGAGATCGAGATAGCTTCGGCTATATATATTTT
*
76279130 TGCACTAAGTGTGCGAG
1 TGCACTTAGTGTGCGAG
76279147 TTTCTCAAGT
Statistics
Matches: 91, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
43 16 0.18
44 2 0.02
45 1 0.01
46 72 0.79
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.36
Consensus pattern (46 bp):
TGCACTTAGTGTGCGAGATCGAGATAGCTTCGGCTATATATATTTT
Found at i:76280089 original size:33 final size:34
Alignment explanation
Indices: 76280045--76280116 Score: 110
Period size: 33 Copynumber: 2.1 Consensus size: 34
76280035 AACAGTGCAT
* *
76280045 GCAGTAACAGTCTGGGCCTGAGCCCTATTCAGTA
1 GCAGTAACAGTCTGGGCCTAAGCCCTATACAGTA
*
76280079 TCAGT-ACAGTCTGGGCCTAAGCCCTATACAGTA
1 GCAGTAACAGTCTGGGCCTAAGCCCTATACAGTA
76280112 GCAGT
1 GCAGT
76280117 GTGGGCCTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 30 0.88
34 4 0.12
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.24
Consensus pattern (34 bp):
GCAGTAACAGTCTGGGCCTAAGCCCTATACAGTA
Found at i:76280121 original size:28 final size:27
Alignment explanation
Indices: 76280080--76280139 Score: 84
Period size: 28 Copynumber: 2.2 Consensus size: 27
76280070 TATTCAGTAT
*
76280080 CAGTACAGTCTGGGCCTAAGCCCTATA
1 CAGTACAGTCTGGGCCTAAGCCCAATA
* *
76280107 CAGTAGCAGTGTGGGCCTAAGCCCAATG
1 CAGTA-CAGTCTGGGCCTAAGCCCAATA
76280135 CAGTA
1 CAGTA
76280140 ACAATACAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 5 0.17
28 24 0.83
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (27 bp):
CAGTACAGTCTGGGCCTAAGCCCAATA
Found at i:76280352 original size:27 final size:27
Alignment explanation
Indices: 76280322--76280386 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
76280312 AATGTGGTAA
* *
76280322 AGCCACCAGTATCAGT-AATTATGGCAT
1 AGCCACCAGTAACAGTGAA-TATGACAT
*
76280349 AGCCACCAGTAACAGTGAATGTGACAT
1 AGCCACCAGTAACAGTGAATATGACAT
*
76280376 AGTCACCAGTA
1 AGCCACCAGTA
76280387 CAGAACTTCC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 31 0.94
28 2 0.06
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (27 bp):
AGCCACCAGTAACAGTGAATATGACAT
Found at i:76280620 original size:26 final size:27
Alignment explanation
Indices: 76280559--76280654 Score: 77
Period size: 27 Copynumber: 3.6 Consensus size: 27
76280549 TCACGATCAC
*
76280559 TTTACCCTACAAGGGCTTTACAGTCAT
1 TTTACCCTACAAGGGCATTACAGTCAT
* * * *
76280586 TTTATCCTACAGGGGCATTACGGTCTT
1 TTTACCCTACAAGGGCATTACAGTCAT
* * * **
76280613 TTTA-CCTATTAGGGGTATTTTAGTCAT
1 TTTACCCTA-CAAGGGCATTACAGTCAT
*
76280640 TTCACCCTACAAGGG
1 TTTACCCTACAAGGG
76280655 TGTTTTGGTA
Statistics
Matches: 53, Mismatches: 14, Indels: 4
0.75 0.20 0.06
Matches are distributed among these distances:
26 4 0.08
27 45 0.85
28 4 0.08
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (27 bp):
TTTACCCTACAAGGGCATTACAGTCAT
Found at i:76280817 original size:54 final size:55
Alignment explanation
Indices: 76280732--76280876 Score: 161
Period size: 54 Copynumber: 2.7 Consensus size: 55
76280722 TTTGAAAGTT
* ** *
76280732 AAGGGTATTTTTGTAATTTTGTAAATCAAGGGTATTTCTG-TAATTTTCCAAATC-
1 AAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTC-GATAATTTTACAAATCG
* **
76280786 AAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGATAATTTTACAGGTCG
1 AAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATCG
* * * *
76280841 AA-GGTATTTCGGTAACTTTACAAACCAGGGGTATTT
1 AAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTT
76280877 TAGTAATACT
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
53 1 0.01
54 74 0.96
55 2 0.03
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (55 bp):
AAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATCG
Found at i:76280833 original size:27 final size:27
Alignment explanation
Indices: 76280669--76280876 Score: 138
Period size: 27 Copynumber: 7.7 Consensus size: 27
76280659 TTGGTAAATC
*
76280669 TACAAA-CTAAGGGTATTTCAATAATTT
1 TACAAATC-AAGGGTATTTCGATAATTT
* * * *
76280696 TGCAAACCAATGGTATTT-TAGTAATTT
1 TACAAATCAAGGGTATTTCGA-TAATTT
** * *
76280723 TTGAAAGTTAAGGGTATTTTTG-TAATTT
1 TACAAA-TCAAGGGTA-TTTCGATAATTT
**
76280751 TGTAAATCAAGGGTATTTCTG-TAATTT
1 TACAAATCAAGGGTATTTC-GATAATTT
* * *
76280778 TCCAAATCAAGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
*
76280805 TACAAATTAAGGGTATTTCGATAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
** * *
76280832 TACAGGTCGAA-GGTATTTCGGTAACTT
1 TACAAATC-AAGGGTATTTCGATAATTT
* *
76280859 TACAAACCAGGGGTATTT
1 TACAAATCAAGGGTATTT
76280877 TAGTAATACT
Statistics
Matches: 143, Mismatches: 29, Indels: 18
0.75 0.15 0.09
Matches are distributed among these distances:
26 6 0.04
27 115 0.80
28 19 0.13
29 3 0.02
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
TACAAATCAAGGGTATTTCGATAATTT
Found at i:76283634 original size:33 final size:33
Alignment explanation
Indices: 76283596--76283672 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
76283586 GAGGTGTACA
76283596 TTCCTTTCCAAATGGTACACACAAAGTATACCT
1 TTCCTTTCCAAATGGTACACACAAAGTATACCT
* * * *
76283629 TTCCTTTTCATATGGTATACACAAAGTATATCT
1 TTCCTTTCCAAATGGTACACACAAAGTATACCT
**
76283662 AACCTTTCCAA
1 TTCCTTTCCAA
76283673 GTGTACATAA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.32, C:0.25, G:0.08, T:0.35
Consensus pattern (33 bp):
TTCCTTTCCAAATGGTACACACAAAGTATACCT
Found at i:76283689 original size:13 final size:13
Alignment explanation
Indices: 76283671--76283695 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76283661 TAACCTTTCC
76283671 AAGTGTACATAAA
1 AAGTGTACATAAA
76283684 AAGTGTACATAA
1 AAGTGTACATAA
76283696 CATTTTCAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.08, G:0.16, T:0.24
Consensus pattern (13 bp):
AAGTGTACATAAA
Found at i:76301353 original size:16 final size:16
Alignment explanation
Indices: 76301313--76301355 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
76301303 CTTACCATTC
*
76301313 ATGTTCATCAAGTAAT
1 ATGTTCATTAAGTAAT
*
76301329 -TCGTACATTAAGTAAT
1 AT-GTTCATTAAGTAAT
76301345 ATGTTCATTAA
1 ATGTTCATTAA
76301356 CTTAGTCAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
15 1 0.05
16 20 0.91
17 1 0.05
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (16 bp):
ATGTTCATTAAGTAAT
Found at i:76301653 original size:32 final size:33
Alignment explanation
Indices: 76301594--76301658 Score: 80
Period size: 32 Copynumber: 2.0 Consensus size: 33
76301584 CATATAGTAT
*
76301594 ACACAAAGTAGACCTAACATTTCCAAG-TGTAC
1 ACACAAAGTAGACATAACATTTCCAAGTTGTAC
* *
76301626 ACACAAAGT-GTACATAACCTTTTCAAGTTGTAC
1 ACACAAAGTAG-ACATAACATTTCCAAGTTGTAC
76301659 CATTTGGGTC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 1 0.04
32 22 0.79
33 5 0.18
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.26
Consensus pattern (33 bp):
ACACAAAGTAGACATAACATTTCCAAGTTGTAC
Found at i:76304339 original size:96 final size:96
Alignment explanation
Indices: 76304239--76304412 Score: 244
Period size: 96 Copynumber: 1.8 Consensus size: 96
76304229 TTTACTTTCT
* * * *
76304239 TCTCTTGTTGGATATTTAATTGGACATCGAAAACCCTTAT-ATCCTTTTCAACTACACTAATAAC
1 TCTCTAGTTGGATATTTAATTGGACATCGAAAACACTTATGAT-CTTTGCAACTACACCAATAAC
76304303 A-TTGCACAAAAGGTGATAGCTCAATCTTGTTC
65 AGTT-CACAAAAGGTGATAGCTCAATCTTGTTC
* * *
76304335 TCTCTAGTTGGATATTTTATTGGACATCGGAAACACTTATGATCTTTGGAACTACACCAATAACA
1 TCTCTAGTTGGATATTTAATTGGACATCGAAAACACTTATGATCTTTGCAACTACACCAATAACA
*
76304400 GTTCACAATAGGT
66 GTTCACAAAAGGT
76304413 AAAAGATCAA
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
96 64 0.94
97 4 0.06
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (96 bp):
TCTCTAGTTGGATATTTAATTGGACATCGAAAACACTTATGATCTTTGCAACTACACCAATAACA
GTTCACAAAAGGTGATAGCTCAATCTTGTTC
Found at i:76312992 original size:41 final size:41
Alignment explanation
Indices: 76312947--76313115 Score: 148
Period size: 41 Copynumber: 4.1 Consensus size: 41
76312937 GCACAAACAT
* *
76312947 CCTTCGGAA-TCAAGCCCGATTCTTAGCACTGGCTCAAAAGC
1 CCTTCGGAACT-AAGCCCGATTATGAGCACTGGCTCAAAAGC
* * * * *
76312988 CCTTC-GAGACCAAGCTCAGATTA-GACCACTGGCTCGAAGGC
1 CCTTCGGA-ACTAAGC-CCGATTATGAGCACTGGCTCAAAAGC
* * *
76313029 CCTTCGGAACTAAGTCCGGTTATGA-CACTGGCTCTAAAGC
1 CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
* ** * *
76313069 CCTTCGAAACTAAGTTCGGTTATTAGCACTGGCTCAAAAGC
1 CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
76313110 CCTTCG
1 CCTTCG
76313116 AGACCAAGCT
Statistics
Matches: 105, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
40 42 0.40
41 56 0.53
42 7 0.07
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (41 bp):
CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
Found at i:76313116 original size:41 final size:41
Alignment explanation
Indices: 76312969--76313116 Score: 167
Period size: 41 Copynumber: 3.6 Consensus size: 41
76312959 AGCCCGATTC
* * * *
76312969 TTAGCACTGGCTCAAAAGCCCTTCGAGACCAAGCTCAG--A
1 TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
* * * *
76313008 TTAGACCACTGGCTCGAAGGCCCTTCGGAACTAAGTCCGGTTA
1 TTAG--CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
* *
76313051 TGA-CACTGGCTCTAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
76313091 TTAGCACTGGCTCAAAAGCCCTTCGA
1 TTAGCACTGGCTCAAAAGCCCTTCGA
76313117 GACCAAGCTC
Statistics
Matches: 89, Mismatches: 15, Indels: 8
0.79 0.13 0.07
Matches are distributed among these distances:
39 4 0.04
40 35 0.39
41 47 0.53
43 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
Found at i:76318047 original size:40 final size:40
Alignment explanation
Indices: 76317996--76318173 Score: 252
Period size: 40 Copynumber: 4.5 Consensus size: 40
76317986 GGCTAATTCC
76317996 GGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCG
*
76318036 GGCTAAGTCCCGAAGGCATTCGTGCGAGCTAGTATATCCG
1 GGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCG
* * * *
76318076 GGCTAAGTCCCGAAGG-GTTTGTGCGAGTTATTATA-CCG
1 GGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCG
* * * * *
76318114 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACCATAACCG
1 GGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCG
76318154 GGCTAAGTCCCGAAGGCATT
1 GGCTAAGTCCCGAAGGCATT
76318174 TGAGCTAGTG
Statistics
Matches: 127, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
38 19 0.15
39 30 0.24
40 78 0.61
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCG
Found at i:76318174 original size:40 final size:40
Alignment explanation
Indices: 76317950--76318175 Score: 248
Period size: 40 Copynumber: 5.7 Consensus size: 40
76317940 TGTTCGGATG
* * *
76317950 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAG-TGGCT
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGCT-ACT
* *
76317990 A-ATTCC-GGCTAAGTCCCGAAGGCATTCGTGCGAGCTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACT
* * *
76318029 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACT
* * * *
76318069 ATATCCGGGCTAAGTCCCGAAGG-GTTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACT
* * *
76318108 AT-ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACT
76318147 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
76318176 AGCTAGTGGC
Statistics
Matches: 164, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
38 19 0.12
39 57 0.35
40 88 0.54
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACT
Found at i:76318190 original size:118 final size:116
Alignment explanation
Indices: 76317996--76318207 Score: 300
Period size: 118 Copynumber: 1.8 Consensus size: 116
76317986 GGCTAATTCC
* * * *
76317996 GGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 GGCTAAGTCCCGAAGGCATTCGTGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTCGAGC
*
76318061 GAGCTAGTATATCCGGGCTAAGTCCCGAAGGGTTTGTGCGAGTTATTATACCG
66 GAGCTAGTATATCC-GGCTAA-ACCCGAAGGGTTTGTGCGAGTTATTATACCG
* * *
76318114 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACCATAACCGGGCTAAGTCCCGAAGGCATTTGAGC
1 GGCTAAGTCCCGAAGGCATTCGTGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTCGAGC
* *
76318179 TAG-TGGCTATATCCGGCTAAACCCGAAGG
66 GAGCTAG-TATATCCGGCTAAACCCGAAGG
76318208 TACTTGGTTT
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
116 8 0.10
117 8 0.10
118 67 0.81
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (116 bp):
GGCTAAGTCCCGAAGGCATTCGTGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTCGAGC
GAGCTAGTATATCCGGCTAAACCCGAAGGGTTTGTGCGAGTTATTATACCG
Found at i:76318204 original size:78 final size:79
Alignment explanation
Indices: 76317996--76318207 Score: 252
Period size: 78 Copynumber: 2.7 Consensus size: 79
76317986 GGCTAATTCC
*
76317996 GGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* ** *
76318061 GAGCTAGTATATCCG
65 AAGCTACCATAACCG
* * *
76318076 GGCTAAGTCCCGAAGG-GTTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
76318139 AAGTTACCATAACCG
65 AAGCTACCATAACCG
* * * *
76318154 GGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA-ACCCGAAGG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGGCTAAGTCCCGAAGG
76318208 TACTTGGTTT
Statistics
Matches: 113, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
78 62 0.55
79 33 0.29
80 18 0.16
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (79 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCA
AGCTACCATAACCG
Found at i:76324897 original size:15 final size:16
Alignment explanation
Indices: 76324877--76324906 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
76324867 AAGATCTTAT
76324877 AATCATAA-CTTACTC
1 AATCATAACCTTACTC
76324892 AATCATAACCTTACT
1 AATCATAACCTTACT
76324907 GAGGGTTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (16 bp):
AATCATAACCTTACTC
Found at i:76326650 original size:34 final size:33
Alignment explanation
Indices: 76326603--76326684 Score: 92
Period size: 34 Copynumber: 2.4 Consensus size: 33
76326593 AGGCCCTTAT
* * * *
76326603 CAGTAGCAATATCAGTGTGGGCCTTAGCCCACTA
1 CAGTA-CAGTATCAGTATAGGCCTTAGCCCAATA
* *
76326637 CGGTAACAGTATCAGTATAGGCCTTAGCCCAATT
1 CAGT-ACAGTATCAGTATAGGCCTTAGCCCAATA
76326671 CAGTACAGTATCAG
1 CAGTACAGTATCAG
76326685 AGATGCAATC
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
33 10 0.25
34 29 0.73
35 1 0.03
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (33 bp):
CAGTACAGTATCAGTATAGGCCTTAGCCCAATA
Found at i:76332385 original size:20 final size:21
Alignment explanation
Indices: 76332348--76332386 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
76332338 TGTAGTTTTG
* *
76332348 AAAATTTTCATTATTTTCTAA
1 AAAATTTTCATGAGTTTCTAA
76332369 AAAATTTT-ATGAGTTTCT
1 AAAATTTTCATGAGTTTCT
76332387 GATTTAGTCC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.36, C:0.08, G:0.05, T:0.51
Consensus pattern (21 bp):
AAAATTTTCATGAGTTTCTAA
Found at i:76337570 original size:22 final size:22
Alignment explanation
Indices: 76337542--76337590 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
76337532 TGGCAAACGG
76337542 GCGTGCCCCTGTGTCCACACGA
1 GCGTGCCCCTGTGTCCACACGA
76337564 GCGTGCCCCTGTGTCCACACGA
1 GCGTGCCCCTGTGTCCACACGA
76337586 GCGTG
1 GCGTG
76337591 TGACTCTGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.12, C:0.39, G:0.31, T:0.18
Consensus pattern (22 bp):
GCGTGCCCCTGTGTCCACACGA
Found at i:76339407 original size:23 final size:23
Alignment explanation
Indices: 76339387--76339432 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
76339377 CAAGTTAATG
76339387 TACATCAATGG-CTAAGATTAAAA
1 TACATCAA-GGACTAAGATTAAAA
76339410 TACATCAAGGACTAAGATTAAAA
1 TACATCAAGGACTAAGATTAAAA
76339433 ACAATCTACA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 2 0.09
23 20 0.91
ACGTcount: A:0.50, C:0.13, G:0.13, T:0.24
Consensus pattern (23 bp):
TACATCAAGGACTAAGATTAAAA
Found at i:76339470 original size:23 final size:24
Alignment explanation
Indices: 76339439--76339485 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
76339429 AAAAACAATC
76339439 TACAAAATCAAATC-TCTAAGATT
1 TACAAAATCAAATCTTCTAAGATT
* *
76339462 TACAGAATCATATCTTCTAAGATT
1 TACAAAATCAAATCTTCTAAGATT
76339486 ACATATCATC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.43, C:0.17, G:0.06, T:0.34
Consensus pattern (24 bp):
TACAAAATCAAATCTTCTAAGATT
Found at i:76339492 original size:17 final size:17
Alignment explanation
Indices: 76339470--76339523 Score: 81
Period size: 17 Copynumber: 3.2 Consensus size: 17
76339460 TTTACAGAAT
*
76339470 CATATCTTCTAAGATTA
1 CATATCTTCCAAGATTA
*
76339487 CATATCATCCAAGATTA
1 CATATCTTCCAAGATTA
*
76339504 CATATCTTCGAAGATTA
1 CATATCTTCCAAGATTA
76339521 CAT
1 CAT
76339524 TCCATATTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 33 1.00
ACGTcount: A:0.37, C:0.20, G:0.07, T:0.35
Consensus pattern (17 bp):
CATATCTTCCAAGATTA
Found at i:76340189 original size:19 final size:18
Alignment explanation
Indices: 76340161--76340196 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
76340151 AGTTTGTAAT
*
76340161 ATAATATATAGATAAATA
1 ATAATATATACATAAATA
76340179 ATAACTATATACATAAAT
1 ATAA-TATATACATAAAT
76340197 TTTAATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.58, C:0.06, G:0.03, T:0.33
Consensus pattern (18 bp):
ATAATATATACATAAATA
Found at i:76353022 original size:19 final size:19
Alignment explanation
Indices: 76352978--76353025 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
76352968 AAAATAATTT
*
76352978 TAAAAAATGTAATAGTAAA
1 TAAAAAATATAATAGTAAA
**
76352997 TTTAAAATATATATA-TAAA
1 TAAAAAATATA-ATAGTAAA
76353016 TAAAAAATAT
1 TAAAAAATAT
76353026 TGTTGACAGT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 20 0.87
20 3 0.13
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (19 bp):
TAAAAAATATAATAGTAAA
Found at i:76353450 original size:28 final size:28
Alignment explanation
Indices: 76353406--76353471 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
76353396 GGAGATTTAT
*
76353406 AAAATAAATTGGAGTTTAGGGA-TTTAAA
1 AAAATAAATTGAAGTTTA-GGATTTTAAA
*
76353434 AAAATAAA-TGAAGGTTTAGGATTTTTAA
1 AAAATAAATTGAA-GTTTAGGATTTTAAA
*
76353462 AAAATTAATT
1 AAAATAAATT
76353472 AAATTAGGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
27 6 0.19
28 25 0.78
29 1 0.03
ACGTcount: A:0.48, C:0.00, G:0.17, T:0.35
Consensus pattern (28 bp):
AAAATAAATTGAAGTTTAGGATTTTAAA
Found at i:76353464 original size:27 final size:28
Alignment explanation
Indices: 76353401--76353464 Score: 69
Period size: 27 Copynumber: 2.3 Consensus size: 28
76353391 GGTTTGGAGA
*
76353401 TTTATAAAATAAATTGGAGTTTAGGGATT
1 TTTA-AAAATAAATTGAAGTTTAGGGATT
**
76353430 TAAAAAAATAAA-TGAAGGTTTA-GGATT
1 TTTAAAAATAAATTGAA-GTTTAGGGATT
76353457 TTTAAAAA
1 TTTAAAAA
76353465 ATTAATTAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 14 0.48
28 13 0.45
29 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.36
Consensus pattern (28 bp):
TTTAAAAATAAATTGAAGTTTAGGGATT
Found at i:76353499 original size:33 final size:32
Alignment explanation
Indices: 76353445--76353535 Score: 119
Period size: 32 Copynumber: 2.7 Consensus size: 32
76353435 AAATAAATGA
*
76353445 AGGTTTAGGATTTTTAAAAAATTAATTAAATT
1 AGGTTTAGGGTTTTTAAAAAATTAATTAAATT
* *
76353477 AGGTTTAGGGCTTTTAAGAAAATTAATTAACTT
1 AGGTTTAGGGTTTTTAA-AAAATTAATTAAATT
76353510 AGGGTTTAGGGTTTTTTAAAATAATT
1 A-GGTTTAGGG-TTTTTAAAA-AATT
76353536 TTGTGTTTAG
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
32 15 0.29
33 15 0.29
34 11 0.22
35 10 0.20
ACGTcount: A:0.37, C:0.02, G:0.18, T:0.43
Consensus pattern (32 bp):
AGGTTTAGGGTTTTTAAAAAATTAATTAAATT
Found at i:76360625 original size:15 final size:16
Alignment explanation
Indices: 76360607--76360646 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
76360597 TGAAAAAATA
76360607 TTTATTTTTATATATT
1 TTTATTTTTATATATT
* *
76360623 TTAAAATTTTATATATT
1 TT-TATTTTTATATATT
76360640 TTTATTT
1 TTTATTT
76360647 CTTGTCAACA
Statistics
Matches: 19, Mismatches: 4, Indels: 2
0.76 0.16 0.08
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTATTTTTATATATT
Found at i:76360696 original size:21 final size:21
Alignment explanation
Indices: 76360669--76360723 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
76360659 ATTTTTTTAT
76360669 TTTATATATTTTTAAAAAAT-
1 TTTATATATTTTTAAAAAATA
*
76360689 TATTATAT-TTTTT-GAAAATA
1 T-TTATATATTTTTAAAAAATA
*
76360709 TTTATGTATTTTTAA
1 TTTATATATTTTTAA
76360724 TTTCTTGAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
19 10 0.36
20 12 0.43
21 6 0.21
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (21 bp):
TTTATATATTTTTAAAAAATA
Found at i:76363246 original size:28 final size:28
Alignment explanation
Indices: 76363208--76363309 Score: 159
Period size: 28 Copynumber: 3.6 Consensus size: 28
76363198 GAATCATTCG
*
76363208 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
*
76363236 ATATCTCGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
* *
76363264 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
*
76363292 ATATTTCGTACACTAAGT
1 ATATTTCGCACACTAAGT
76363310 ACCATATTTG
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 69 1.00
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.36
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGTCATTCTCA
Found at i:76365706 original size:27 final size:27
Alignment explanation
Indices: 76365676--76365736 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
76365666 CCTAAATTCG
76365676 AATGTAAAAACCTTAT-AGTTTCATTAA
1 AATGTAAAAACCTTATGA-TTTCATTAA
*
76365703 AATGTAAAAACGTTATGATTTCATTAA
1 AATGTAAAAACCTTATGATTTCATTAA
76365730 AATGTAA
1 AATGTAA
76365737 CACCTACTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.46, C:0.08, G:0.10, T:0.36
Consensus pattern (27 bp):
AATGTAAAAACCTTATGATTTCATTAA
Found at i:76366790 original size:20 final size:19
Alignment explanation
Indices: 76366765--76366822 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 19
76366755 TTAAAACGAC
76366765 TAAAAAACATATTTTTATTT
1 TAAAAAACATATTTTT-TTT
* *
76366785 TAAAAATCTAAACTTTTTTTT
1 TAAAAAAC-ATA-TTTTTTTT
*
76366806 TAAAAAAAAATATTTTT
1 T-AAAAAACATATTTTT
76366823 CTTAAAGATC
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
20 12 0.40
21 8 0.27
22 10 0.33
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.48
Consensus pattern (19 bp):
TAAAAAACATATTTTTTTT
Found at i:76366791 original size:142 final size:144
Alignment explanation
Indices: 76366645--76366951 Score: 378
Period size: 144 Copynumber: 2.1 Consensus size: 144
76366635 TTTTTTTTGC
**
76366645 AAAATC-AAA-GTTTTCTTTAAAAAATCATGTACTTTTCTTAAAAATCAAA-ATTTTATTTCG-A
1 AAAATCTAAACGTTTTCTTTAAAAAA--AAATACTTTTCTTAAAAATCAAAGATTTTATTTCGAA
*
76366706 ATAGTTGAAAAATATCAAAAATTTGTTTTAAAAAATCTAAACTTTTCCTTTAAAACGACT-AAAA
64 ATAGTTGAAAAAAATCAAAAATTTGTTTT-AAAAATCTAAAC-TTTCCTTTAAAACGACTAAAAA
76366770 AACATATTTTTA-TTTTA
127 AACATATTTTTACTTTTA
* * * * * *
76366787 AAAATCTAAACTTTTTTTTTAAAAAAAAATATTTTTCTTAAAGATCAAAGCTTTTATTTTGAAAT
1 AAAATCTAAACGTTTTCTTTAAAAAAAAATACTTTTCTTAAAAATCAAAGATTTTATTTCGAAAT
* * * *
76366852 ATTTGAAAAAAATCAAAATTTTGTTTTAAAAATTTAAACTTTCCTTTAAAATGACTAAAAAAAAA
66 AGTTGAAAAAAATCAAAAATTTGTTTTAAAAATCTAAACTTTCCTTTAAAACGACT--AAAAAAA
76366917 CATATTTTTACTTTT-
129 CATATTTTTACTTTTA
76366932 AAAATCTAAAC-TTTCTCTTT
1 AAAATCTAAACGTTT-TCTTT
76366952 TTTTAAAAAA
Statistics
Matches: 142, Mismatches: 14, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
142 41 0.29
143 23 0.16
144 43 0.30
145 31 0.22
146 4 0.03
ACGTcount: A:0.44, C:0.10, G:0.04, T:0.42
Consensus pattern (144 bp):
AAAATCTAAACGTTTTCTTTAAAAAAAAATACTTTTCTTAAAAATCAAAGATTTTATTTCGAAAT
AGTTGAAAAAAATCAAAAATTTGTTTTAAAAATCTAAACTTTCCTTTAAAACGACTAAAAAAACA
TATTTTTACTTTTA
Found at i:76366811 original size:22 final size:22
Alignment explanation
Indices: 76366731--76366812 Score: 58
Period size: 22 Copynumber: 3.5 Consensus size: 22
76366721 CAAAAATTTG
*
76366731 TTTTAAAAAATCTAAACTTTTC
1 TTTTAAAAAATCTAAACTTTTT
* *
76366753 CTTTAAAACGA-CTAAAAAACATATTTT
1 TTTTAAAA-AATCT---AAAC-T-TTTT
*
76366780 TATTTTAAAAATCTAAACTTTTT
1 T-TTTAAAAAATCTAAACTTTTT
76366803 TTTTAAAAAA
1 TTTTAAAAAA
76366813 AAATATTTTT
Statistics
Matches: 45, Mismatches: 7, Indels: 16
0.66 0.10 0.24
Matches are distributed among these distances:
22 17 0.38
23 6 0.13
24 1 0.02
25 8 0.18
26 1 0.02
27 4 0.09
28 8 0.18
ACGTcount: A:0.45, C:0.11, G:0.01, T:0.43
Consensus pattern (22 bp):
TTTTAAAAAATCTAAACTTTTT
Found at i:76366822 original size:21 final size:21
Alignment explanation
Indices: 76366766--76366822 Score: 55
Period size: 21 Copynumber: 2.7 Consensus size: 21
76366756 TAAAACGACT
*
76366766 AAAAAACATATTTTTATTTTA
1 AAAAAAAATATTTTTATTTTA
* *
76366787 AAAATCTAAA-CTTTTT-TTTTA
1 AAAA--AAAATATTTTTATTTTA
76366808 AAAAAAAATATTTTT
1 AAAAAAAATATTTTT
76366823 CTTAAAGATC
Statistics
Matches: 28, Mismatches: 5, Indels: 7
0.70 0.12 0.17
Matches are distributed among these distances:
19 3 0.11
20 5 0.18
21 13 0.46
22 5 0.18
23 2 0.07
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (21 bp):
AAAAAAAATATTTTTATTTTA
Found at i:76366828 original size:40 final size:42
Alignment explanation
Indices: 76366766--76366846 Score: 96
Period size: 40 Copynumber: 2.0 Consensus size: 42
76366756 TAAAACGACT
* * *
76366766 AAAAAACATATTTTTATTTTAAAAATCTAAA-CTTTTTTTTTA
1 AAAAAAAATATTTTTATCTTAAAAATC-AAAGCTTTTATTTTA
*
76366808 AAAAAAAATA-TTTT-TCTTAAAGATCAAAGCTTTTATTTT
1 AAAAAAAATATTTTTATCTTAAAAATCAAAGCTTTTATTTT
76366847 GAAATATTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
39 3 0.09
40 18 0.53
41 4 0.12
42 9 0.26
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.47
Consensus pattern (42 bp):
AAAAAAAATATTTTTATCTTAAAAATCAAAGCTTTTATTTTA
Found at i:76369719 original size:23 final size:24
Alignment explanation
Indices: 76369680--76369724 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
76369670 AAGCTCACAA
76369680 AGAGCCATATCCGGAAGCTTATAT
1 AGAGCCATATCCGGAAGCTTATAT
76369704 AGAGCC-TAT-CGAGAAGCTTAT
1 AGAGCCATATCCG-GAAGCTTAT
76369725 CTGGGCTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 2 0.10
23 12 0.60
24 6 0.30
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.24
Consensus pattern (24 bp):
AGAGCCATATCCGGAAGCTTATAT
Found at i:76370025 original size:52 final size:52
Alignment explanation
Indices: 76369963--76370068 Score: 185
Period size: 52 Copynumber: 2.0 Consensus size: 52
76369953 ACTGTTTGCT
*
76369963 TTAGAGAAAACTAAATTTTAGTCGTGCTTATCAGTAATAAAATCATCAACAG
1 TTAGAGAAAACCAAATTTTAGTCGTGCTTATCAGTAATAAAATCATCAACAG
* *
76370015 TTAGAGAAAACCGAATTTTAGTCGTGCTTATCAGTGATAAAATCATCAACAG
1 TTAGAGAAAACCAAATTTTAGTCGTGCTTATCAGTAATAAAATCATCAACAG
76370067 TT
1 TT
76370069 CAACAGTCGA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.31
Consensus pattern (52 bp):
TTAGAGAAAACCAAATTTTAGTCGTGCTTATCAGTAATAAAATCATCAACAG
Found at i:76383095 original size:18 final size:19
Alignment explanation
Indices: 76383054--76383095 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
76383044 AATTTAAAAC
76383054 TTATAAAAAAATATAAATA
1 TTATAAAAAAATATAAATA
*
76383073 -AATAAAAAAATA-AAATA
1 TTATAAAAAAATATAAATA
76383090 TTATAA
1 TTATAA
76383096 GTTTATAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (19 bp):
TTATAAAAAAATATAAATA
Found at i:76383235 original size:18 final size:17
Alignment explanation
Indices: 76383208--76383242 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
76383198 TAATATTATT
76383208 TATATATTTTAAATTTTA
1 TATATATTTT-AATTTTA
*
76383226 TATATTTTTTAATTTTA
1 TATATATTTTAATTTTA
76383243 CAATAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TATATATTTTAATTTTA
Found at i:76383398 original size:8 final size:8
Alignment explanation
Indices: 76383369--76383411 Score: 52
Period size: 8 Copynumber: 5.2 Consensus size: 8
76383359 AAAGATTATA
76383369 TTTTTAAT
1 TTTTTAAT
*
76383377 TAATTTATAT
1 T-TTTTA-AT
76383387 TTTTTAAT
1 TTTTTAAT
76383395 TTTTTAA-
1 TTTTTAAT
76383402 TTTTTAAT
1 TTTTTAAT
76383410 TT
1 TT
76383412 AGATCCATTG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
7 7 0.23
8 12 0.40
9 8 0.27
10 3 0.10
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (8 bp):
TTTTTAAT
Found at i:76383407 original size:15 final size:16
Alignment explanation
Indices: 76383364--76383411 Score: 55
Period size: 15 Copynumber: 3.0 Consensus size: 16
76383354 GTGAAAAAGA
76383364 TTAT-ATTTTTAATTAAT
1 TTATAATTTTTAATT--T
*
76383381 TTATATTTTTTAATTT
1 TTATAATTTTTAATTT
76383397 TT-TAATTTTTAATTT
1 TTATAATTTTTAATTT
76383412 AGATCCATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 12 0.43
16 3 0.11
17 4 0.14
18 9 0.32
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TTATAATTTTTAATTT
Done.