Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 266 of 444
Found at i:76386560 original size:22 final size:21
Alignment explanation
Indices: 76386535--76386590 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
76386525 TTCCCAAAGT
*
76386535 AGCGATTCT-TTCTCTTTAAGCC
1 AGCGATGCTCTTCTC-TT-AGCC
*
76386557 AGCGCTGCTCTTCTCTTAGCC
1 AGCGATGCTCTTCTCTTAGCC
*
76386578 AGCGTTGCTCTTC
1 AGCGATGCTCTTC
76386591 ACGGAGCCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 16 0.53
22 9 0.30
23 5 0.17
ACGTcount: A:0.12, C:0.32, G:0.18, T:0.38
Consensus pattern (21 bp):
AGCGATGCTCTTCTCTTAGCC
Found at i:76386579 original size:21 final size:23
Alignment explanation
Indices: 76386544--76386590 Score: 71
Period size: 21 Copynumber: 2.1 Consensus size: 23
76386534 TAGCGATTCT
76386544 TTCTCTTTAAGCCAGCGCTGCTC
1 TTCTCTTTAAGCCAGCGCTGCTC
*
76386567 TTCTC-TT-AGCCAGCGTTGCTC
1 TTCTCTTTAAGCCAGCGCTGCTC
76386588 TTC
1 TTC
76386591 ACGGAGCCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 16 0.70
22 2 0.09
23 5 0.22
ACGTcount: A:0.11, C:0.34, G:0.17, T:0.38
Consensus pattern (23 bp):
TTCTCTTTAAGCCAGCGCTGCTC
Found at i:76386598 original size:21 final size:21
Alignment explanation
Indices: 76386553--76386620 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
76386543 TTTCTCTTTA
* **
76386553 AGCCAGCGCTGCTCTTCTCTT
1 AGCCAGCGCTGCTCTTCACGG
*
76386574 AGCCAGCGTTGCTCTTCACGG
1 AGCCAGCGCTGCTCTTCACGG
* * * *
76386595 AGCCATCGCTGTTCCTCACGA
1 AGCCAGCGCTGCTCTTCACGG
76386616 AGCCA
1 AGCCA
76386621 CCTGGTTTCT
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.16, C:0.37, G:0.22, T:0.25
Consensus pattern (21 bp):
AGCCAGCGCTGCTCTTCACGG
Found at i:76386886 original size:3 final size:3
Alignment explanation
Indices: 76386878--76386907 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
76386868 AAAACAAACT
76386878 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
76386908 AGCTGATACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:76395711 original size:42 final size:42
Alignment explanation
Indices: 76395583--76395738 Score: 172
Period size: 42 Copynumber: 3.7 Consensus size: 42
76395573 TACCGTACCA
** *
76395583 ATGCCATATCCCAGATATGGTCTTTTATGTAA-TCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCGTATCG
** * * ***
76395625 AAT-CCAATAGGCCAGCTATAGTCTTACACGAAGTCTCACCTCG
1 -ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCGTATCG
76395668 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCGTATCG
*
76395710 ATGCCACATCCCAGATATGGTCTTACACG
1 ATGCCATATCCCAGATATGGTCTTACACG
76395739 TAATCTTAGT
Statistics
Matches: 92, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
42 64 0.70
43 28 0.30
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCGTATCG
Found at i:76398353 original size:34 final size:34
Alignment explanation
Indices: 76398315--76398382 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
76398305 TAACTTGATC
*
76398315 TAAATAATCAAATTCAATCCATTTAGTATTCATT
1 TAAATAATCAAATTCAATCCATTTAGCATTCATT
76398349 TAAATAATCAAATTCAATCCATTTAGCATTCATT
1 TAAATAATCAAATTCAATCCATTTAGCATTCATT
76398383 CTATTTGATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.41, C:0.16, G:0.03, T:0.40
Consensus pattern (34 bp):
TAAATAATCAAATTCAATCCATTTAGCATTCATT
Found at i:76412345 original size:115 final size:115
Alignment explanation
Indices: 76412139--76412486 Score: 606
Period size: 115 Copynumber: 3.0 Consensus size: 115
76412129 TTTCCACCAC
*
76412139 CCATTTCAAGCATGTACCTACAAGCCATTTGCACCCTCGTTCAAAGCATCAAAACATACCAAAAC
1 CCATTTCAAGCATGTACCTACAAGCCATTTGCACCCTTGTTCAAAGCATCAAAACATACCAAAAC
*
76412204 ATGCATGAAATGACCAATTCACTATACCATTATTCCATCCGACCAATATG
66 ATGCATGAAATGACCAATTCACTATACCATTATTCCATCCAACCAATATG
* * * * * *
76412254 CCATTTGAAGCATGTACCTACAAGCTATTTGCACCCTTTTTCAAAGTATTAAAAAATACCAAAAC
1 CCATTTCAAGCATGTACCTACAAGCCATTTGCACCCTTGTTCAAAGCATCAAAACATACCAAAAC
*
76412319 ATGCATGAAATGACCAATTCAGTATACCATTATTCCATCCAACCAATATG
66 ATGCATGAAATGACCAATTCACTATACCATTATTCCATCCAACCAATATG
*
76412369 CCATTTCAAGCATGTACCTATAAGCCATTTGCACCCTTGTTCAAAGCATCAAAACATACCAAAAC
1 CCATTTCAAGCATGTACCTACAAGCCATTTGCACCCTTGTTCAAAGCATCAAAACATACCAAAAC
76412434 ATGCATGAAATGACCAATTCACTATACCATTATTCCATCCAACCAATATG
66 ATGCATGAAATGACCAATTCACTATACCATTATTCCATCCAACCAATATG
76412484 CCA
1 CCA
76412487 ATAAGGAACC
Statistics
Matches: 216, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
115 216 1.00
ACGTcount: A:0.37, C:0.27, G:0.09, T:0.26
Consensus pattern (115 bp):
CCATTTCAAGCATGTACCTACAAGCCATTTGCACCCTTGTTCAAAGCATCAAAACATACCAAAAC
ATGCATGAAATGACCAATTCACTATACCATTATTCCATCCAACCAATATG
Found at i:76416260 original size:40 final size:39
Alignment explanation
Indices: 76416215--76416344 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
76416205 CGGAATATAA
76416215 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
76416255 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
76416295 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
76416335 CCGGATATAA
1 CCGGATATAA
76416345 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:76416359 original size:40 final size:40
Alignment explanation
Indices: 76416231--76416382 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
76416221 ATAACCATGT
* * *
76416231 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
76416271 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
76416311 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
76416351 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
76416383 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:76416365 original size:80 final size:80
Alignment explanation
Indices: 76416231--76416380 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
76416221 ATAACCATGT
*
76416231 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
76416295 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
76416311 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
76416374 CCCGGAT
64 CCCGGAT
76416381 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:76424273 original size:40 final size:39
Alignment explanation
Indices: 76424228--76424357 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
76424218 CGGAATATAA
76424228 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
76424268 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
76424308 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
76424348 CCGGATATAA
1 CCGGATATAA
76424358 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:76424372 original size:40 final size:40
Alignment explanation
Indices: 76424244--76424395 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
76424234 ATAACCATGT
* * *
76424244 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
76424284 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
76424324 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
76424364 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
76424396 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:76424378 original size:80 final size:80
Alignment explanation
Indices: 76424244--76424393 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
76424234 ATAACCATGT
*
76424244 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
76424308 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
76424324 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
76424387 CCCGGAT
64 CCCGGAT
76424394 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:76427694 original size:39 final size:40
Alignment explanation
Indices: 76427507--76427710 Score: 243
Period size: 40 Copynumber: 5.2 Consensus size: 40
76427497 TTCTTCGAAT
* * *
76427507 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
76427546 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
76427586 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
76427626 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
76427666 TTAGCCCGGATAT-ATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
76427705 TTAGCC
1 TTAGCC
76427711 GGGTATTATT
Statistics
Matches: 142, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
39 35 0.25
40 106 0.75
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:76435641 original size:40 final size:40
Alignment explanation
Indices: 76435592--76435796 Score: 213
Period size: 39 Copynumber: 5.2 Consensus size: 40
76435582 TCTTCGGAAT
* *
76435592 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
** * * *
76435631 TTAATCCGGATTTGTA--ACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAT-AACCACTAGCACAAATGCCTTCGGGTC
* * *
76435670 TTAGCCCGGATATAACAACTCGCACGAATGCCTTC-GGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
76435709 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
** * *
76435749 TTAGCCCGGATATATTCACTAGCATAAATGCC-TCGGGGC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
76435788 TTAGCCCGG
1 TTAGCCCGG
76435797 GTATTATTTA
Statistics
Matches: 141, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
38 1 0.01
39 82 0.58
40 57 0.40
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:76437582 original size:109 final size:105
Alignment explanation
Indices: 76437368--76437584 Score: 382
Period size: 109 Copynumber: 2.0 Consensus size: 105
76437358 CACAAGTCCT
76437368 ATTGACTAAATTCACATGAAATTTACTAAATAAACTTGAAATTTTCACACATTCACATATAACAT
1 ATTGACTAAATTCACATGAAATTTACTAAATAAACTTGAAATTTTCACACATTCACATATAACAT
76437433 ATTAGACAATAATATTACGTCCAAACATTTCGGTGACTCG
66 ATTAGACAATAATATTACGTCCAAACATTTCGGTGACTCG
76437473 ATTGACTAAATTCACATGAAATTTACTAAATCAAAACTTGAAATTTTCACACATTCACATAT-AC
1 ATTGACTAAATTCACATGAAATTTACTAAAT--AAACTTGAAATTTTCACACATTCACATATAAC
76437537 ATATTCTAGACAATAAATATTACGTCCAAACATTTCGGTGACTCG
64 ATA-T-TAGACAAT-AATATTACGTCCAAACATTTCGGTGACTCG
76437582 ATT
1 ATT
76437585 TAGCGGTCCC
Statistics
Matches: 107, Mismatches: 0, Indels: 6
0.95 0.00 0.05
Matches are distributed among these distances:
105 31 0.29
106 5 0.05
107 30 0.28
108 8 0.07
109 33 0.31
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.33
Consensus pattern (105 bp):
ATTGACTAAATTCACATGAAATTTACTAAATAAACTTGAAATTTTCACACATTCACATATAACAT
ATTAGACAATAATATTACGTCCAAACATTTCGGTGACTCG
Found at i:76448264 original size:80 final size:80
Alignment explanation
Indices: 76448180--76448328 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
76448170 TATGGTAACC
* * * *
76448180 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
76448244 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
76448260 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
76448325 CCGG
66 CCGG
76448329 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:76448270 original size:40 final size:38
Alignment explanation
Indices: 76448221--76448328 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
76448211 ATCACGATTT
*
76448221 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
76448261 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
76448301 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
76448329 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:76455549 original size:80 final size:80
Alignment explanation
Indices: 76455465--76455613 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
76455455 TATGGTAACC
* * * *
76455465 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
76455529 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
76455545 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
76455610 CCGG
66 CCGG
76455614 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:76455555 original size:40 final size:38
Alignment explanation
Indices: 76455506--76455613 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
76455496 ATCACGATTT
*
76455506 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
76455546 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
76455586 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
76455614 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:76457372 original size:40 final size:40
Alignment explanation
Indices: 76457326--76457510 Score: 183
Period size: 40 Copynumber: 4.6 Consensus size: 40
76457316 CTTGCGCAAG
* * * *
76457326 GCCTTCGGGTCTTAGCCCAGATGTGGTCACTTGCATAAAT
1 GCCTTCGGGTCTTAGCCCAGATATAGTCACTAGCACAAAT
* * *
76457366 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCAGATATAGTCACTAGCACAAAT
** * *
76457406 GCCTTCGGGTCTTAGCCTGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCAGATATAGTC-ACTAGCACAAAT
* * * * *
76457446 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCAGATATAGTCA-CTAGCACAAAT
* *
76457487 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCAGATAT
76457511 CATTCGAATA
Statistics
Matches: 119, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 89 0.75
41 29 0.24
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCAGATATAGTCACTAGCACAAAT
Found at i:76457419 original size:80 final size:81
Alignment explanation
Indices: 76457326--76457510 Score: 214
Period size: 80 Copynumber: 2.3 Consensus size: 81
76457316 CTTGCGCAAG
* * * *
76457326 GCCTTCGGGTCTTAGCCCAGATGTGGTC-ACTTGCATAAATGCCTTCGGGA-CTTAGCCCGGATA
1 GCCTTCGGGTCTTAGCCCAGATATAG-CAACTCGCACAAATGCCTTC-GGATCTTAGCCCGGATA
* *
76457389 TAGTC-GCTAGCACAAAT
64 TAGTCACCTAGCACAAAA
** * * *
76457406 GCCTTCGGGTCTTAGCCTGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATA
1 GCCTTCGGGTCTTAGCCCAGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATATA
76457471 GTCACCTAGCACAAAA
66 GTCACCTAGCACAAAA
* *
76457487 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCAGATAT
76457511 CATTCGAATA
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
79 4 0.04
80 53 0.60
81 32 0.36
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (81 bp):
GCCTTCGGGTCTTAGCCCAGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATATA
GTCACCTAGCACAAAA
Found at i:76460420 original size:4 final size:4
Alignment explanation
Indices: 76460404--76460469 Score: 61
Period size: 4 Copynumber: 17.5 Consensus size: 4
76460394 AACAAACATA
* * *
76460404 TTTC TCTTC -TTC TTTC TTT- TCTC TTT- TTTC TTT- TTTT TTTC -TCC
1 TTTC T-TTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
76460448 TTTC TTTC TTTC TTTC TTTC TT
1 TTTC TTTC TTTC TTTC TTTC TT
76460470 CTCCCTCTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
3 13 0.25
4 35 0.69
5 3 0.06
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:76460436 original size:18 final size:18
Alignment explanation
Indices: 76460404--76460458 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
76460394 AACAAACATA
*
76460404 TTTCTC-TTCTTCTTTCT
1 TTTCTCTTTTTTCTTTCT
*
76460421 TTTCTCTTTTTTCTTTTT
1 TTTCTCTTTTTTCTTTCT
* **
76460439 TTTTTCTCCTTTCTTTCT
1 TTTCTCTTTTTTCTTTCT
76460457 TT
1 TT
76460459 CTTTCTTTCT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
17 6 0.19
18 25 0.81
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTCTCTTTTTTCTTTCT
Found at i:76460471 original size:26 final size:25
Alignment explanation
Indices: 76460425--76460487 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
76460415 CTTTCTTTTC
* *
76460425 TCTTTTTTCTTTTTTTTTTCTCCTT
1 TCTTTTTTCTTTCTTTCTTCTCCTT
*
76460450 TCTTTCTTTCTTTCTTTCTTCTCC-C
1 TCTTT-TTTCTTTCTTTCTTCTCCTT
76460475 TCTTTTCTTCTTT
1 TCTTTT-TTCTTT
76460488 ACTGCTGCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 1 0.03
25 16 0.48
26 16 0.48
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (25 bp):
TCTTTTTTCTTTCTTTCTTCTCCTT
Found at i:76463924 original size:30 final size:29
Alignment explanation
Indices: 76463890--76463968 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 29
76463880 AGTCGAAGCT
* *
76463890 ATCCCTTCTCATTATTTGATGGTTGTCAGC
1 ATCCCTT-TCATTATTTGATGGTCGTCACC
*
76463920 ATCCCCTTTCATT-GTTGATGGTCGTCACC
1 AT-CCCTTTCATTATTTGATGGTCGTCACC
* *
76463949 ATCGCTTTCCATAATTTGAT
1 ATCCCTTT-CATTATTTGAT
76463969 AGCCAAAGCT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
28 5 0.12
29 18 0.45
30 12 0.30
31 5 0.12
ACGTcount: A:0.18, C:0.25, G:0.15, T:0.42
Consensus pattern (29 bp):
ATCCCTTTCATTATTTGATGGTCGTCACC
Found at i:76470285 original size:27 final size:26
Alignment explanation
Indices: 76470237--76470288 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
76470227 GCGAGGCTGC
*
76470237 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
76470263 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
76470289 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:76471111 original size:26 final size:27
Alignment explanation
Indices: 76470952--76471109 Score: 151
Period size: 27 Copynumber: 5.9 Consensus size: 27
76470942 CTTGCCCTAC
* *
76470952 AGGGGTATTTCGGTAATTTTATAAA-T
1 AGGGGTATTTTGGTAATTTTACAAACT
* *** * *
76470978 TGAGGGTAAAATGGTAATTCTATAAA-T
1 AG-GGGTATTTTGGTAATTTTACAAACT
* **
76471005 CAGGGGTACTTTGGTAATTTTACAATTT
1 -AGGGGTATTTTGGTAATTTTACAAACT
* *
76471033 AAGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACT
76471060 AGGGGTATTTTGGTAA-TTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
*
76471086 AGGGGTATTTTAGTAATTTTACAA
1 AGGGGTATTTTGGTAATTTTACAA
76471110 CTTATCCACT
Statistics
Matches: 107, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
26 25 0.23
27 80 0.75
28 2 0.02
ACGTcount: A:0.32, C:0.07, G:0.22, T:0.39
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:76477123 original size:2 final size:2
Alignment explanation
Indices: 76477116--76477153 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
76477106 CCACCAGAAC
76477116 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76477154 GTGGCGAAGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76477234 original size:27 final size:26
Alignment explanation
Indices: 76477187--76477237 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
76477177 CGAGGCTGCC
*
76477187 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
76477213 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
76477238 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:76477962 original size:27 final size:26
Alignment explanation
Indices: 76477932--76478023 Score: 89
Period size: 27 Copynumber: 3.5 Consensus size: 26
76477922 GGGTAAAATA
*
76477932 GTAATTCTATAAATCAGGGGTACTTTG
1 GTAATTCTACAAATCAGGGGTA-TTTG
* *
76477959 GTAATTTTACAAGTC-GAGGGTATTTG
1 GTAATTCTACAAATCAG-GGGTATTTG
* *
76477985 GTAATTTTACAAA-CTAGGGGTATTTTA
1 GTAATTCTACAAATC-AGGGGTA-TTTG
76478012 GTAATTCTACAA
1 GTAATTCTACAA
76478024 CTTATCCACT
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
25 1 0.02
26 22 0.40
27 32 0.58
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.38
Consensus pattern (26 bp):
GTAATTCTACAAATCAGGGGTATTTG
Found at i:76481073 original size:16 final size:16
Alignment explanation
Indices: 76481054--76481096 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
76481044 ATTTTCGACC
*
76481054 TTTCGGCTTTTTAAAT
1 TTTCGGCTTTTCAAAT
* **
76481070 TTTCGACTTTTCAGCT
1 TTTCGGCTTTTCAAAT
76481086 TTTCGGCTTTT
1 TTTCGGCTTTT
76481097 GCTATTACAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.12, C:0.19, G:0.14, T:0.56
Consensus pattern (16 bp):
TTTCGGCTTTTCAAAT
Found at i:76481075 original size:24 final size:24
Alignment explanation
Indices: 76481043--76481088 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
76481033 TCGACATCCC
*
76481043 AATTTTCGACCTTTCGGCTTTTTA
1 AATTTTCGACCTTTCAGCTTTTTA
*
76481067 AATTTTCGACTTTTCAGCTTTT
1 AATTTTCGACCTTTCAGCTTTT
76481089 CGGCTTTTGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.17, C:0.20, G:0.11, T:0.52
Consensus pattern (24 bp):
AATTTTCGACCTTTCAGCTTTTTA
Found at i:76483232 original size:39 final size:40
Alignment explanation
Indices: 76483158--76483294 Score: 208
Period size: 39 Copynumber: 3.5 Consensus size: 40
76483148 CGGATGATAA
76483158 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
76483198 CCGGGCTAAGTCCCGAAGG-ATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
76483237 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
76483277 CC-GGCTAAATCCTGAAGG
1 CCGGGCTAAGTCCCGAAGG
76483295 TACTTGGGTT
Statistics
Matches: 90, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
39 54 0.60
40 36 0.40
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:76490206 original size:27 final size:28
Alignment explanation
Indices: 76490150--76490219 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
76490140 AAACTTGTAC
76490150 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
76490178 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
76490205 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
76490220 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:76490230 original size:27 final size:27
Alignment explanation
Indices: 76490150--76490231 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
76490140 AAACTTGTAC
* *
76490150 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
76490178 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
76490205 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
76490232 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:76495998 original size:40 final size:40
Alignment explanation
Indices: 76495939--76496146 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
76495929 CAATTGAATG
* * * *
76495939 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
76495979 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
76496019 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
76496059 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
76496099 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
76496139 ATATCCGG
1 ATATCCGG
76496147 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:76496077 original size:80 final size:80
Alignment explanation
Indices: 76495940--76496146 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
76495930 AATTGAATGA
* * ** * * *
76495940 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
76496005 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
76496018 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
76496083 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
76496100 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
76496147 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:76501518 original size:27 final size:28
Alignment explanation
Indices: 76501462--76501531 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
76501452 AAACTTGTAC
76501462 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
76501490 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
76501517 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
76501532 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:76501542 original size:27 final size:27
Alignment explanation
Indices: 76501462--76501543 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
76501452 AAACTTGTAC
* *
76501462 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
76501490 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
76501517 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
76501544 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:76505700 original size:40 final size:40
Alignment explanation
Indices: 76505645--76505780 Score: 204
Period size: 40 Copynumber: 3.4 Consensus size: 40
76505635 GATGATAACT
*
76505645 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
76505685 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
76505725 GGGCTAAGCCCCGAAGGCATTTGAGCGAG-TAGCTATAT-C
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
76505764 TGGCTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
76505781 TACTTGGGTT
Statistics
Matches: 89, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 17 0.19
40 72 0.81
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:76517708 original size:108 final size:109
Alignment explanation
Indices: 76517513--76517717 Score: 279
Period size: 109 Copynumber: 1.9 Consensus size: 109
76517503 ATTAGGGTTT
* * * ** * *
76517513 AAAGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTTCAAGGCAAGGAAATCAT
1 AAAGATACCAAGTAAGACCATGCCAAGGCATGGAAATAGTAAGTTCATCAAGGCAAGGAAACCAC
76517578 GTAAGACCATGTCAAGACATGGC-ATTGATAAACTACTATAAGGC
66 GTAAGACCATGTCAAGACATGGCAATTG-TAAACTACTATAAGGC
* * * * *
76517622 AAAGATCCCATGTAAGACCATGCCAAGGCATGGAAATAGTGAGTTCAT-AAGGGAAGGATACCAC
1 AAAGATACCAAGTAAGACCATGCCAAGGCATGGAAATAGTAAGTTCATCAAGGCAAGGAAACCAC
76517686 GTAAGACCATGTCAAGACATGGCAATTGTAAA
66 GTAAGACCATGTCAAGACATGGCAATTGTAAA
76517718 TTTAAAAAGG
Statistics
Matches: 83, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
108 39 0.47
109 44 0.53
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (109 bp):
AAAGATACCAAGTAAGACCATGCCAAGGCATGGAAATAGTAAGTTCATCAAGGCAAGGAAACCAC
GTAAGACCATGTCAAGACATGGCAATTGTAAACTACTATAAGGC
Found at i:76521228 original size:31 final size:31
Alignment explanation
Indices: 76521193--76521296 Score: 111
Period size: 31 Copynumber: 3.3 Consensus size: 31
76521183 ATATGGATTG
76521193 TTTTGAATAATTTGGTGAATAAAAGGGTTAA
1 TTTTGAATAATTTGGTGAATAAAAGGGTTAA
* ** * * * *
76521224 TTTTGAATACATATATTGTGTGTATATGGATT-G
1 TTTTGAATA-AT-T-TGGTGAATAAAAGGGTTAA
76521257 TTTTGAATAATTTGGTGAATAAAAGGGTTAA
1 TTTTGAATAATTTGGTGAATAAAAGGGTTAA
76521288 TTTTGAATA
1 TTTTGAATA
76521297 CATATAGATC
Statistics
Matches: 55, Mismatches: 14, Indels: 8
0.71 0.18 0.10
Matches are distributed among these distances:
30 11 0.20
31 19 0.35
32 4 0.07
33 10 0.18
34 11 0.20
ACGTcount: A:0.35, C:0.01, G:0.21, T:0.43
Consensus pattern (31 bp):
TTTTGAATAATTTGGTGAATAAAAGGGTTAA
Found at i:76521253 original size:64 final size:64
Alignment explanation
Indices: 76521174--76521302 Score: 258
Period size: 64 Copynumber: 2.0 Consensus size: 64
76521164 AAATGCCCTA
76521174 ATTGTGTGTATATGGATTGTTTTGAATAATTTGGTGAATAAAAGGGTTAATTTTGAATACATAT
1 ATTGTGTGTATATGGATTGTTTTGAATAATTTGGTGAATAAAAGGGTTAATTTTGAATACATAT
76521238 ATTGTGTGTATATGGATTGTTTTGAATAATTTGGTGAATAAAAGGGTTAATTTTGAATACATAT
1 ATTGTGTGTATATGGATTGTTTTGAATAATTTGGTGAATAAAAGGGTTAATTTTGAATACATAT
76521302 A
1 A
76521303 GATCAAGAAA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.33, C:0.02, G:0.22, T:0.43
Consensus pattern (64 bp):
ATTGTGTGTATATGGATTGTTTTGAATAATTTGGTGAATAAAAGGGTTAATTTTGAATACATAT
Found at i:76524814 original size:36 final size:36
Alignment explanation
Indices: 76524771--76524841 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
76524761 AGAAAGAAAG
76524771 ATGCAGTATAGGTTGTGATTGATAAGCTAACGAAGA
1 ATGCAGTATAGGTTGTGATTGATAAGCTAACGAAGA
76524807 ATGCAGTATAGGTTGTGATTGATAAGCTAACGAAG
1 ATGCAGTATAGGTTGTGATTGATAAGCTAACGAAG
76524842 TCGACTCATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.28
Consensus pattern (36 bp):
ATGCAGTATAGGTTGTGATTGATAAGCTAACGAAGA
Found at i:76527113 original size:41 final size:41
Alignment explanation
Indices: 76526942--76527101 Score: 177
Period size: 41 Copynumber: 3.9 Consensus size: 41
76526932 GGGTCTAAAT
76526942 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * * * *
76526983 CCGAACTTAGTTTCGAAGGGCTTTAGAGCCAGTG-TCATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * *
76527023 CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGTGGTCTAAT--
1 CCGAG-CTTGGTCT-CGAAGGGCTTTTGAGCCAGT-G-CTAATAA
76527064 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
76527102 GAATCGGGCT
Statistics
Matches: 100, Mismatches: 12, Indels: 16
0.78 0.09 0.12
Matches are distributed among these distances:
39 5 0.05
40 33 0.33
41 57 0.57
42 2 0.02
43 3 0.03
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (41 bp):
CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
Found at i:76535114 original size:41 final size:41
Alignment explanation
Indices: 76534943--76535102 Score: 168
Period size: 41 Copynumber: 3.9 Consensus size: 41
76534933 GGATCTAAAT
76534943 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * * * * *
76534984 CCGAACTTAGTTTCGAAGGGATTTAGAGCCAGTG-TCATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * *
76535024 CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGTGGTCTAAT--
1 CCGAG-CTTGGTCT-CGAAGGGCTTTTGAGCCAGT-G-CTAATAA
76535065 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
76535103 GAATCGGGCT
Statistics
Matches: 98, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
39 5 0.05
40 32 0.33
41 56 0.57
42 2 0.02
43 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (41 bp):
CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
Found at i:76538334 original size:40 final size:40
Alignment explanation
Indices: 76538267--76538416 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 40
76538257 ACAACCACAA
* * *** *
76538267 GCACAATTGCCTT-GGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
76538306 GCACCATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* * *
76538346 GCACGA-TGCCTTCGGGTCTTAGCCCGGACATAATC-ACTA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * *
76538385 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
76538417 CATTCAAATG
Statistics
Matches: 94, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
39 45 0.48
40 49 0.52
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:76538356 original size:39 final size:40
Alignment explanation
Indices: 76538313--76538416 Score: 140
Period size: 39 Copynumber: 2.6 Consensus size: 40
76538303 CTTGCACCAT
* **
76538313 TGCCTTCGGGTCTTAGCCCGGATATAA-CAACTCGCA-CGA
1 TGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAA
*
76538352 TGCCTTCGGGTCTTAGCCCGGACATAATCACTAGCATAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAA
*
76538392 TGCCTTCGGGACTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
76538417 CATTCAAATG
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
39 32 0.56
40 25 0.44
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAA
Found at i:76552849 original size:28 final size:29
Alignment explanation
Indices: 76552780--76552851 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 29
76552770 GACAAGATTG
* *
76552780 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-AAATTATACA
* *
76552810 GCACTAAGTGTGCGAGTTT-GATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTATACA
76552838 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
76552852 GATTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 20 0.53
30 18 0.47
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.31
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTAAATTATACA
Found at i:76555128 original size:3 final size:3
Alignment explanation
Indices: 76555120--76555150 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
76555110 AGATATTTAC
*
76555120 TTA TTA TTA TTA TTA TTA TGA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
76555151 CAATAATTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:76555267 original size:22 final size:23
Alignment explanation
Indices: 76555225--76555271 Score: 58
Period size: 26 Copynumber: 1.9 Consensus size: 23
76555215 ACACATGTAG
*
76555225 TATTTTTATTTATATTAATTAGA
1 TATTTTTAATTATATTAATTAGA
76555248 TATTTTATAATTAATTATTAATTA
1 TATTTT-TAATT-A-TATTAATTA
76555272 AGTAAATGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 6 0.30
24 4 0.20
25 1 0.05
26 9 0.45
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (23 bp):
TATTTTTAATTATATTAATTAGA
Found at i:76558149 original size:40 final size:40
Alignment explanation
Indices: 76558104--76558271 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
76558094 CGGAATACAA
76558104 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
76558144 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
76558184 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
76558224 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
76558264 CCGGATAT
1 CCGGATAT
76558272 CATTCAATTG
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 102 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:76566220 original size:40 final size:40
Alignment explanation
Indices: 76566175--76566304 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
76566165 CGGAATACAA
76566175 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * * *
76566215 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTAAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
76566255 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
76566295 CCGGATATAA
1 CCGGATATAA
76566305 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:76576637 original size:20 final size:19
Alignment explanation
Indices: 76576599--76576663 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 19
76576589 ATAATGCTAT
76576599 ACAGAGGCAAGTAGTGCAA
1 ACAGAGGCAAGTAGTGCAA
* *
76576618 ACAGAGGCATGATTGTGCAA
1 ACAGAGGCAAG-TAGTGCAA
* *
76576638 TCAGAGG-AACTGGAGTGCAA
1 ACAGAGGCAA--GTAGTGCAA
76576658 ACAGAG
1 ACAGAG
76576664 AAGTGCAAAT
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
19 11 0.31
20 24 0.67
21 1 0.03
ACGTcount: A:0.38, C:0.15, G:0.32, T:0.14
Consensus pattern (19 bp):
ACAGAGGCAAGTAGTGCAA
Found at i:76577866 original size:30 final size:30
Alignment explanation
Indices: 76577832--76577892 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
76577822 TTCCCGAGCC
76577832 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
76577862 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
76577892 T
1 T
76577893 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:76580267 original size:91 final size:91
Alignment explanation
Indices: 76580112--76580294 Score: 348
Period size: 91 Copynumber: 2.0 Consensus size: 91
76580102 GTAAAATGAG
*
76580112 TATGAGAGATACATGTATGATGATATACAAATGCTATGTTTGTGGTTTAATTGAGAATATTTAAT
1 TATGAGAGACACATGTATGATGATATACAAATGCTATGTTTGTGGTTTAATTGAGAATATTTAAT
*
76580177 CATAAATGAATACCATGTTGTATGCT
66 CATAAATGAATACCATGTTATATGCT
76580203 TATGAGAGACACATGTATGATGATATACAAATGCTATGTTTGTGGTTTAATTGAGAATATTTAAT
1 TATGAGAGACACATGTATGATGATATACAAATGCTATGTTTGTGGTTTAATTGAGAATATTTAAT
76580268 CATAAATGAATACCATGTTATATGCT
66 CATAAATGAATACCATGTTATATGCT
76580294 T
1 T
76580295 TTGATTTTGT
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 90 1.00
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.38
Consensus pattern (91 bp):
TATGAGAGACACATGTATGATGATATACAAATGCTATGTTTGTGGTTTAATTGAGAATATTTAAT
CATAAATGAATACCATGTTATATGCT
Found at i:76586194 original size:12 final size:12
Alignment explanation
Indices: 76586177--76586201 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76586167 GGAGCGAACT
76586177 AAAAACTGCCCC
1 AAAAACTGCCCC
76586189 AAAAACTGCCCC
1 AAAAACTGCCCC
76586201 A
1 A
76586202 TCCCATTTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.40, G:0.08, T:0.08
Consensus pattern (12 bp):
AAAAACTGCCCC
Found at i:76588549 original size:10 final size:10
Alignment explanation
Indices: 76588499--76588558 Score: 63
Period size: 11 Copynumber: 6.0 Consensus size: 10
76588489 TTATAATTCG
76588499 TAATAATTTT
1 TAATAATTTT
76588509 TAAATAATTTAT
1 T-AATAATTT-T
*
76588521 TAAT--TTAT
1 TAATAATTTT
76588529 TAATAAATTTT
1 TAAT-AATTTT
76588540 T-ATAATTTT
1 TAATAATTTT
76588549 TAATAATTTT
1 TAATAATTTT
76588559 AAATGTCTCT
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
8 5 0.12
9 9 0.21
10 11 0.26
11 15 0.36
12 2 0.05
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
TAATAATTTT
Found at i:76588556 original size:31 final size:30
Alignment explanation
Indices: 76588499--76588557 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
76588489 TTATAATTCG
*
76588499 TAATAATTTTTAAATAATTTATTAATTTAT
1 TAATAATTTTTAAATAATTTAATAATTTAT
*
76588529 TAATAAATTTTTATAAT-TTTTAATAATTT
1 TAAT-AATTTTTA-AATAATTTAATAATTT
76588558 TAAATGTCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 4 0.16
31 18 0.72
32 3 0.12
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (30 bp):
TAATAATTTTTAAATAATTTAATAATTTAT
Found at i:76588558 original size:19 final size:19
Alignment explanation
Indices: 76588501--76588558 Score: 73
Period size: 19 Copynumber: 2.9 Consensus size: 19
76588491 ATAATTCGTA
*
76588501 ATAATTTTTAAATAATTTAT
1 ATAATTTTT-AATAATTTTT
76588521 -TAATTTATTAATAAATTTTT
1 ATAATTT-TTAAT-AATTTTT
76588541 ATAATTTTTAATAATTTT
1 ATAATTTTTAATAATTTT
76588559 AAATGTCTCT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
19 15 0.44
20 13 0.38
21 6 0.18
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
ATAATTTTTAATAATTTTT
Found at i:76597361 original size:40 final size:40
Alignment explanation
Indices: 76597316--76597481 Score: 296
Period size: 40 Copynumber: 4.2 Consensus size: 40
76597306 ACCGGATGTC
*
76597316 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACG
* *
76597356 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCTGGATTCG
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACG
76597396 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACG
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACG
*
76597436 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACT
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACG
76597476 ATTCCA
1 ATTCCA
76597482 CATCAAATAA
Statistics
Matches: 120, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 120 1.00
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (40 bp):
ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACG
Found at i:76597407 original size:80 final size:78
Alignment explanation
Indices: 76597290--76597481 Score: 296
Period size: 80 Copynumber: 2.4 Consensus size: 78
76597280 TATCTAGCAC
* *
76597290 AGCCTGCAGGTTTTTAA-CCGGATGTCATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATA
1 AGCCTGCGGGTCTTTAAGCCGGAT-TCATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATA
76597354 CAATTCCAGCACGA
65 CAATTCCAGCACGA
76597368 AGCCTGCGGGTCTTTAAGCCTGGATTCGATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGAT
1 AGCCTGCGGGTCTTTAAGCC-GGATTC-ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGAT
*
76597433 ACGATTCCAGCACGA
64 ACAATTCCAGCACGA
*
76597448 AGCCTGCGGGTCTTTAAGCCCGGATACTATTCCA
1 AGCCTGCGGGTCTTTAAG-CCGGATTC-ATTCCA
76597482 CATCAAATAA
Statistics
Matches: 105, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
78 15 0.14
79 4 0.04
80 84 0.80
81 2 0.02
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Consensus pattern (78 bp):
AGCCTGCGGGTCTTTAAGCCGGATTCATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATAC
AATTCCAGCACGA
Found at i:76606200 original size:40 final size:40
Alignment explanation
Indices: 76606156--76606321 Score: 296
Period size: 40 Copynumber: 4.2 Consensus size: 40
76606146 CCCGGATGTC
76606156 ATTCCAGCACGAAGCCTACGGGTCTTTAAGCCCGGATACA
1 ATTCCAGCACGAAGCCTACGGGTCTTTAAGCCCGGATACA
*
76606196 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
1 ATTCCAGCACGAAGCCTACGGGTCTTTAAGCCCGGATACA
* *
76606236 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACG
1 ATTCCAGCACGAAGCCTACGGGTCTTTAAGCCCGGATACA
*
76606276 ATTCCAGCACGAAGCCTACGGGTCTTTAAGCCCGGATACC
1 ATTCCAGCACGAAGCCTACGGGTCTTTAAGCCCGGATACA
76606316 ATTCCA
1 ATTCCA
76606322 CATCAAATAA
Statistics
Matches: 122, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 122 1.00
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.20
Consensus pattern (40 bp):
ATTCCAGCACGAAGCCTACGGGTCTTTAAGCCCGGATACA
Found at i:76606240 original size:80 final size:79
Alignment explanation
Indices: 76606129--76606321 Score: 298
Period size: 80 Copynumber: 2.4 Consensus size: 79
76606119 TATCTAGCAC
* * *
76606129 AGCCTGCAGGTTTTTAA-CCCGGATGTCATTCCAGCACGAAGCCTACGGGTCTTTAAGCCCGGAT
1 AGCCTGCGGGTCTTTAAGCCCGGAT-ACATTCCAGCACGAAGCCTACGGGTCTTTAAGCCCGGAT
76606193 ACAATTCCAGCACGA
65 ACAATTCCAGCACGA
*
76606208 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGAT
1 AGCCTGCGGGTCTTTAAGCCCGGATAC-ATTCCAGCACGAAGCCTACGGGTCTTTAAGCCCGGAT
*
76606273 ACGATTCCAGCACGA
65 ACAATTCCAGCACGA
*
76606288 AGCCTACGGGTCTTTAAGCCCGGATACCATTCCA
1 AGCCTGCGGGTCTTTAAGCCCGGATA-CATTCCA
76606322 CATCAAATAA
Statistics
Matches: 105, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
79 16 0.15
80 88 0.84
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (79 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACATTCCAGCACGAAGCCTACGGGTCTTTAAGCCCGGATA
CAATTCCAGCACGA
Found at i:76610014 original size:26 final size:26
Alignment explanation
Indices: 76609961--76610015 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
76609951 TTTTCCCTAC
* *
76609961 AAAATTTTGACAATTTTACTCTTAGT
1 AAAATTTTAACAATTTTACCCTTAGT
* *
76609987 AAAATTTTAACAATTTTGCCCTTGGT
1 AAAATTTTAACAATTTTACCCTTAGT
76610013 AAA
1 AAA
76610016 TTTCGAAAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.42
Consensus pattern (26 bp):
AAAATTTTAACAATTTTACCCTTAGT
Found at i:76612422 original size:30 final size:30
Alignment explanation
Indices: 76612386--76612655 Score: 189
Period size: 30 Copynumber: 9.1 Consensus size: 30
76612376 CAACTTATCA
*
76612386 ACGACCATCTAATTATGAAAATGGATGGTG
1 ACGACCATCTAATTATGAAAAGGGATGGTG
*
76612416 ACGACCAT-TGAATTATGAAAAGGGATAGCT-
1 ACGACCATCT-AATTATGAAAAGGGAT-GGTG
* * * * * *
76612446 TCAACTATC-GATTATGAAAAGGGATAGTA
1 ACGACCATCTAATTATGAAAAGGGATGGTG
76612475 ACGACCAT-TGAATTATGAAAAGGGATGGTG
1 ACGACCATCT-AATTATGAAAAGGGATGGTG
* * *
76612505 ACGACCATCGAATTATGAAAAAGGATAGCT-
1 ACGACCATCTAATTATGAAAAGGGAT-GGTG
* * *
76612535 TC-AGCTATCAAATTATGAAAAGGGATGGTG
1 ACGA-CCATCTAATTATGAAAAGGGATGGTG
* *
76612565 ACGATCAT-TGAATTATGAAAAAGGATGGTG
1 ACGACCATCT-AATTATGAAAAGGGATGGTG
* * ** * *
76612595 ACAACCATCGAATTACAAAAAAGGATAGCT-
1 ACGACCATCTAATTATGAAAAGGGAT-GGTG
* * *
76612625 TCGACTATC-GATTATGAAAAGGGATGGTG
1 ACGACCATCTAATTATGAAAAGGGATGGTG
76612654 AC
1 AC
76612656 AACGATCATG
Statistics
Matches: 183, Mismatches: 42, Indels: 31
0.71 0.16 0.12
Matches are distributed among these distances:
28 3 0.02
29 37 0.20
30 136 0.74
31 7 0.04
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.24
Consensus pattern (30 bp):
ACGACCATCTAATTATGAAAAGGGATGGTG
Found at i:76612591 original size:90 final size:89
Alignment explanation
Indices: 76612386--76612655 Score: 391
Period size: 89 Copynumber: 3.0 Consensus size: 89
76612376 CAACTTATCA
* * * *
76612386 ACGACCATCT-AATTATGAAAATGGATGGTGACGACCATTGAATTATGAAAAGGGATAGCTTCAA
1 ACGACCAT-TGAATTATGAAAAAGGATGGTGACGACCATCGAATTATGAAAAAGGATAGCTTCAG
* *
76612450 CTATCGATTATGAAAAGGGATAGTA
65 CTATCGATTATGAAAAGGGATGGTG
*
76612475 ACGACCATTGAATTATGAAAAGGGATGGTGACGACCATCGAATTATGAAAAAGGATAGCTTCAGC
1 ACGACCATTGAATTATGAAAAAGGATGGTGACGACCATCGAATTATGAAAAAGGATAGCTTCAGC
*
76612540 TATCAAATTATGAAAAGGGATGGTG
66 TATC-GATTATGAAAAGGGATGGTG
* * **
76612565 ACGATCATTGAATTATGAAAAAGGATGGTGACAACCATCGAATTACAAAAAAGGATAGCTTC-GA
1 ACGACCATTGAATTATGAAAAAGGATGGTGACGACCATCGAATTATGAAAAAGGATAGCTTCAG-
76612629 CTATCGATTATGAAAAGGGATGGTG
65 CTATCGATTATGAAAAGGGATGGTG
76612654 AC
1 AC
76612656 AACGATCATG
Statistics
Matches: 165, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
88 1 0.01
89 85 0.52
90 79 0.48
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.24
Consensus pattern (89 bp):
ACGACCATTGAATTATGAAAAAGGATGGTGACGACCATCGAATTATGAAAAAGGATAGCTTCAGC
TATCGATTATGAAAAGGGATGGTG
Found at i:76612609 original size:60 final size:60
Alignment explanation
Indices: 76612386--76612658 Score: 218
Period size: 60 Copynumber: 4.6 Consensus size: 60
76612376 CAACTTATCA
* * * * * *
76612386 ACGACCATCTAATTATGAAAATGGATGGTGACGACCATTGAATTATGAAAAGGGATAGCT-
1 ACGAACATCGAATTATGAAAAAGGATGGTGACAACCATCGAATTATGAAAAGGGAT-GGTG
* * * * * *
76612446 TC-AACTATCG-ATTATGAAAAGGGATAGTAACGACCATTGAATTATGAAAAGGGATGGTG
1 ACGAAC-ATCGAATTATGAAAAAGGATGGTGACAACCATCGAATTATGAAAAGGGATGGTG
* * * * * *
76612505 ACGACCATCGAATTATGAAAAAGGATAGCT-TCAGCTATCAAATTATGAAAAGGGATGGTG
1 ACGAACATCGAATTATGAAAAAGGAT-GGTGACAACCATCGAATTATGAAAAGGGATGGTG
* * ** * *
76612565 ACGATCATTGAATTATGAAAAAGGATGGTGACAACCATCGAATTACAAAAAAGGATAGCT-
1 ACGAACATCGAATTATGAAAAAGGATGGTGACAACCATCGAATTATGAAAAGGGAT-GGTG
* *
76612625 TCG-ACTATCG-ATTATGAAAAGGGATGGTGACAAC
1 ACGAAC-ATCGAATTATGAAAAAGGATGGTGACAAC
76612659 GATCATGATT
Statistics
Matches: 172, Mismatches: 33, Indels: 17
0.77 0.15 0.08
Matches are distributed among these distances:
58 2 0.01
59 75 0.44
60 92 0.53
61 3 0.02
ACGTcount: A:0.40, C:0.13, G:0.23, T:0.24
Consensus pattern (60 bp):
ACGAACATCGAATTATGAAAAAGGATGGTGACAACCATCGAATTATGAAAAGGGATGGTG
Found at i:76619220 original size:22 final size:22
Alignment explanation
Indices: 76619192--76619256 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
76619182 GCAAATATGT
* *
76619192 TTGGCACACATCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
76619214 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
76619236 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
76619257 AATAATTGGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:76619441 original size:41 final size:41
Alignment explanation
Indices: 76619393--76619511 Score: 166
Period size: 41 Copynumber: 2.9 Consensus size: 41
76619383 AGGCCTAAAA
* * *
76619393 GATCCACGGTTGTCAAGCAACCATGCAATCCTTAATTGGTG
1 GATCCACGGTCGTCAAGCAACCATGCGATCCTCAATTGGTG
* * *
76619434 GATCCACGATCGTCAAGCAACCATGCGATTCTCAATCGGTG
1 GATCCACGGTCGTCAAGCAACCATGCGATCCTCAATTGGTG
* *
76619475 GATCCATGGTCATCAAGCAACCATGCGATCCTCAATT
1 GATCCACGGTCGTCAAGCAACCATGCGATCCTCAATT
76619512 TCTTCCTACG
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 67 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (41 bp):
GATCCACGGTCGTCAAGCAACCATGCGATCCTCAATTGGTG
Found at i:76619800 original size:27 final size:27
Alignment explanation
Indices: 76619748--76620117 Score: 298
Period size: 27 Copynumber: 13.7 Consensus size: 27
76619738 TTTCACCTTA
* * * * *
76619748 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * *
76619775 CAAGGGTATTTCGATAATTTTGCAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAT
* **
76619802 CAATGGTATTTC-GTAATTTTTGAAAGT
1 CAAGGGTATTTCGGTAATTTTACAAA-T
* * * * *
76619829 CAAAGGTATATCTGCAATTTTATAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* *
76619856 CAAGGGTATTTCTGTAATTTTCCAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * *
76619883 TAAGGGTATTTCGGTACTTTTTCAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* *
76619910 CGAGGGTATTTCGGTAATTTTACAAGT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* **
76619937 CAAGGGTATTTCGATAATTTTACATGT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * ** **
76619964 CGAGGGCATTTCAATAATTTTACAGGTT
1 CAAGGGTATTTCGGTAATTTTACA-AAT
**
76619992 C-AGGGTATTTCGGTAATTTTACAGGT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * * *
76620018 CGAGGGTATTTCAGTAATTTCAAAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
*
76620045 CAGGGGTATTTCGGTAATTTTACAAA-
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * *
76620071 CTAGGGATATTTTGGTAATTTTACAAAC
1 CAAGGG-TATTTCGGTAATTTTACAAAT
*
76620099 CAAGGGTA-TTCAGTAATTT
1 CAAGGGTATTTCGGTAATTT
76620118 CAGTAAATCT
Statistics
Matches: 279, Mismatches: 58, Indels: 13
0.80 0.17 0.04
Matches are distributed among these distances:
26 26 0.09
27 236 0.85
28 17 0.06
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAT
Found at i:76623128 original size:22 final size:22
Alignment explanation
Indices: 76623100--76623151 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
76623090 GCAAATACAT
76623100 TTGGCACACAACCATAAT-CAGG
1 TTGGCACACAACCAT-ATGCAGG
* * *
76623122 TTGGCACAGAGCCATATGTAGG
1 TTGGCACACAACCATATGCAGG
76623144 TTGGCACA
1 TTGGCACA
76623152 AAGCCATGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 2 0.08
22 24 0.92
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.21
Consensus pattern (22 bp):
TTGGCACACAACCATATGCAGG
Found at i:76623297 original size:22 final size:21
Alignment explanation
Indices: 76623261--76623324 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 21
76623251 GCAAATACAT
76623261 TTGGCACACAA-CCATAATCAGG
1 TTGGCACA-AAGCCAT-ATCAGG
* * *
76623283 TTGGCGCAGAGCCATATGTAGG
1 TTGGCACAAAGCCATAT-CAGG
76623305 TTGGCACAAAGCCATGATCA
1 TTGGCACAAAGCCAT-ATCA
76623325 AAATAATTGG
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 28 0.85
23 2 0.06
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.20
Consensus pattern (21 bp):
TTGGCACAAAGCCATATCAGG
Found at i:76623337 original size:161 final size:161
Alignment explanation
Indices: 76623062--76623408 Score: 667
Period size: 161 Copynumber: 2.1 Consensus size: 161
76623052 AGAGTCGTCA
76623062 ATAATCATATATTGGCACATAGCCTTAGGCAAATACATTTGGCACACAACCATAATCAGGTTGGC
1 ATAAT-ATA-ATTGGCACATAGCCTTAGGCAAATACATTTGGCACACAACCATAATCAGGTTGGC
76623127 ACAGAGCCATATGTAGGTTGGCACAAAGCCATGATCAAAATAATTGGCTTGAAGCCATCGGTAGC
64 ACAGAGCCATATGTAGGTTGGCACAAAGCCATGATCAAAATAATTGGCTTGAAGCCATCGGTAGC
76623192 TGTATCATGTTAGGTTTATAGCCATCAGTGACG
129 TGTATCATGTTAGGTTTATAGCCATCAGTGACG
*
76623225 ATAATATAATTGGCACATAGCCTTAGGCAAATACATTTGGCACACAACCATAATCAGGTTGGCGC
1 ATAATATAATTGGCACATAGCCTTAGGCAAATACATTTGGCACACAACCATAATCAGGTTGGCAC
76623290 AGAGCCATATGTAGGTTGGCACAAAGCCATGATCAAAATAATTGGCTTGAAGCCATCGGTAGCTG
66 AGAGCCATATGTAGGTTGGCACAAAGCCATGATCAAAATAATTGGCTTGAAGCCATCGGTAGCTG
76623355 TATCATGTTAGGTTTATAGCCATCAGTGACG
131 TATCATGTTAGGTTTATAGCCATCAGTGACG
76623386 ATAATATAATTGGCACATAGCCT
1 ATAATATAATTGGCACATAGCCT
76623409 CGTGTAAATA
Statistics
Matches: 183, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
161 175 0.96
162 3 0.02
163 5 0.03
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (161 bp):
ATAATATAATTGGCACATAGCCTTAGGCAAATACATTTGGCACACAACCATAATCAGGTTGGCAC
AGAGCCATATGTAGGTTGGCACAAAGCCATGATCAAAATAATTGGCTTGAAGCCATCGGTAGCTG
TATCATGTTAGGTTTATAGCCATCAGTGACG
Found at i:76623531 original size:41 final size:41
Alignment explanation
Indices: 76623469--76623548 Score: 133
Period size: 41 Copynumber: 2.0 Consensus size: 41
76623459 AAAGCCACCG
*
76623469 GTGGATCCACGGTCATCAAGCAACCATGCGATTCTCAATCA
1 GTGGATCCACGGTCATCAAGCAACCATGCGATCCTCAATCA
* *
76623510 GTGGATCCACGGTCGTTAAGCAACCATGCGATCCTCAAT
1 GTGGATCCACGGTCATCAAGCAACCATGCGATCCTCAAT
76623549 TTCTTCCTCT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.23
Consensus pattern (41 bp):
GTGGATCCACGGTCATCAAGCAACCATGCGATCCTCAATCA
Found at i:76623857 original size:27 final size:27
Alignment explanation
Indices: 76623827--76624174 Score: 120
Period size: 27 Copynumber: 12.9 Consensus size: 27
76623817 GGTATTTCGA
* *
76623827 TAATTTTGCAAACCAATGGTATTTTTG
1 TAATTTTGCAAATCAAGGGTATTTTTG
*
76623854 TAATTTTTG-AAAGTCAAAGGTATTTCTT-
1 TAA-TTTTGCAAA-TCAAGGGTATTT-TTG
* * * *
76623882 TAATCTTGTAAATCAGGGGTATTTCTG
1 TAATTTTGCAAATCAAGGGTATTTTTG
* * **
76623909 TAATTTTTCAAATCAAGGGTATCTCGG
1 TAATTTTGCAAATCAAGGGTATTTTTG
** **
76623936 TAATTTT-CAAAATTGAGGGTATTTCAG
1 TAATTTTGC-AAATCAAGGGTATTTTTG
* * * * *
76623963 AAATTTTACAAGTCGAGGGTATTTTAG
1 TAATTTTGCAAATCAAGGGTATTTTTG
* ** **
76623990 TAATTTTACAGGTCAAGGGTATTTCGG
1 TAATTTTGCAAATCAAGGGTATTTTTG
* * **
76624017 TAATTTTACAAGTCGAA-GGTATTTCGG
1 TAATTTTGCAAATC-AAGGGTATTTTTG
* *** * *
76624044 TAATTTTACTGGTCGAGGGTA-TTTCG
1 TAATTTTGCAAATCAAGGGTATTTTTG
** * *
76624070 ATAATTTCACAAAT-TAGGGATATTTTGG
1 -TAATTTTGCAAATCAAGGG-TATTTTTG
* *
76624098 TAATTTTACAAA-CCAGGGT-TGTTTTGG
1 TAATTTTGCAAATCAAGGGTAT-TTTT-G
* * *
76624125 TAATTTTACAAA-CTAGGGGTATTTTGG
1 TAATTTTGCAAATC-AAGGGTATTTTTG
* * *
76624152 TAATTTTACAAACCAATGGTATT
1 TAATTTTGCAAATCAAGGGTATT
76624175 CATTAATTTC
Statistics
Matches: 258, Mismatches: 45, Indels: 36
0.76 0.13 0.11
Matches are distributed among these distances:
25 1 0.00
26 14 0.05
27 204 0.79
28 36 0.14
29 3 0.01
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
TAATTTTGCAAATCAAGGGTATTTTTG
Found at i:76623960 original size:54 final size:54
Alignment explanation
Indices: 76623817--76624183 Score: 210
Period size: 54 Copynumber: 6.8 Consensus size: 54
76623807 ATAAACCAAT
* * * * ** *
76623817 GGTATTTCGATAATTTTGCAAACCAATGGTATTTTTGTAATTTTTGA-AAGTCAAA
1 GGTATTTCGGTAATTTTACAAATCAAGGGTATTTCAGTAA-TTTT-ACAAGTCAAG
** * ** * * * *
76623872 GGTATTTCTTTAATCTTGTAAATCAGGGGTATTTCTGTAATTTTTCAAATCAAG
1 GGTATTTCGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTACAAGTCAAG
* ** * *
76623926 GGTATCTCGGTAATTTT-CAAAATTGAGGGTATTTCAGAAATTTTACAAGTCGAG
1 GGTATTTCGGTAATTTTAC-AAATCAAGGGTATTTCAGTAATTTTACAAGTCAAG
** ** *
76623980 GGTATTTTAGTAATTTTACAGGTCAAGGGTATTTCGGTAATTTTACAAGTCGAA-
1 GGTATTTCGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTACAAGTC-AAG
*** * * * *
76624034 GGTATTTCGGTAATTTTACTGGTCGAGGGTATTTC-GATAATTTCACAAAT-TAG
1 GGTATTTCGGTAATTTTACAAATCAAGGGTATTTCAG-TAATTTTACAAGTCAAG
* * * ** * *
76624087 GGATATTTTGGTAATTTTACAAA-CCAGGGTTGTTTTGGTAATTTTACAA-ACTAGG
1 GG-TATTTCGGTAATTTTACAAATCAAGGG-TATTTCAGTAATTTTACAAGTC-AAG
* * * *
76624142 GGTATTTTGGTAATTTTACAAACCAATGGTA-TTCATTAATTT
1 GGTATTTCGGTAATTTTACAAATCAAGGGTATTTCAGTAATTT
76624184 CAGTAAATCT
Statistics
Matches: 242, Mismatches: 58, Indels: 26
0.74 0.18 0.08
Matches are distributed among these distances:
52 1 0.00
53 16 0.07
54 183 0.76
55 42 0.17
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.41
Consensus pattern (54 bp):
GGTATTTCGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTACAAGTCAAG
Found at i:76623993 original size:81 final size:81
Alignment explanation
Indices: 76623898--76624109 Score: 225
Period size: 81 Copynumber: 2.6 Consensus size: 81
76623888 TGTAAATCAG
* * *
76623898 GGGTATTTCTGTAATTTTTCAAATCAAGGGTATCTCGGTAATTTT-CAAAATTGAGGGTATTTCA
1 GGGTATTTCTGTAATTTTACAAATCAAGGGTATCTCGGTAATTTTAC-AAATCGAAGGTATTTCA
76623962 GAAATTTTACAAGTCGA
65 GAAATTTTACAAGTCGA
** * * *
76623979 GGGTATTT-TAGTAATTTTACAGGTCAAGGGTATTTCGGTAATTTTACAAGTCGAAGGTATTTCG
1 GGGTATTTCT-GTAATTTTACAAATCAAGGGTATCTCGGTAATTTTACAAATCGAAGGTATTTCA
* **
76624043 GTAATTTTACTGGTCGA
65 GAAATTTTACAAGTCGA
* * * *
76624060 GGGTATTTC-GATAATTTCACAAAT-TAGGGATATTTTGGTAATTTTACAAA
1 GGGTATTTCTG-TAATTTTACAAATCAAGGG-TATCTCGGTAATTTTACAAA
76624110 CCAGGGTTGT
Statistics
Matches: 109, Mismatches: 17, Indels: 10
0.80 0.12 0.07
Matches are distributed among these distances:
80 6 0.06
81 102 0.94
82 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (81 bp):
GGGTATTTCTGTAATTTTACAAATCAAGGGTATCTCGGTAATTTTACAAATCGAAGGTATTTCAG
AAATTTTACAAGTCGA
Found at i:76624659 original size:27 final size:27
Alignment explanation
Indices: 76624607--76624995 Score: 239
Period size: 27 Copynumber: 14.4 Consensus size: 27
76624597 TTTCACCCTA
* * * * *
76624607 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * *
76624634 CAAGGGTATTTCGATAATTTTGCAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAT
* ** **
76624661 CAATGGTATTTTTGTAATTTTTGAAAGT
1 CAAGGGTATTTCGGTAATTTTACAAA-T
* ** * **
76624689 CAAAGGTATTTCTTTAATCTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * *
76624716 CAGGGGTATTTCTGTAATTTTTCAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* *
76624743 CAAGGGTATCTAGGTAATTTT-CAAAAT
1 CAAGGGTATTTCGGTAATTTTAC-AAAT
** * * *
76624770 TGAGGGTATTTCAGAAATTTTACAAGT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* ** **
76624797 CGAGGGTATTTTAGTAATTTTACAGGT
1 CAAGGGTATTTCGGTAATTTTACAAAT
*
76624824 CAAGGGTATTTCGGTAATTTTACAAGT
1 CAAGGGTATTTCGGTAATTTTACAAAT
***
76624851 CGAA-GGTATTTCGGTAATTTTACTGGT
1 C-AAGGGTATTTCGGTAATTTTACAAAT
* * *
76624878 CGAGGGTATTTCGATAATTTCACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* *
76624905 -TAGGGATATTTTGGTAATTTTACAAA-
1 CAAGGG-TATTTCGGTAATTTTACAAAT
* * *
76624931 CCAGGGTTGTTTTGGTAATTTTACAAA-
1 CAAGGG-TATTTCGGTAATTTTACAAAT
* * *
76624958 CTAGGGGTATTTTGGTAATTTTACAAAC
1 C-AAGGGTATTTCGGTAATTTTACAAAT
*
76624986 CAATGGTATT
1 CAAGGGTATT
76624996 CATTAATTTC
Statistics
Matches: 289, Mismatches: 64, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
26 6 0.02
27 256 0.89
28 27 0.09
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAT
Found at i:76624697 original size:55 final size:54
Alignment explanation
Indices: 76624629--76624751 Score: 129
Period size: 55 Copynumber: 2.3 Consensus size: 54
76624619 GGTAAATCTA
* * * * *
76624629 CAAACCAAGGGTATTTCGATAATTTTGCAAACCAATGGTATTTTTGTAATTTTT
1 CAAATCAAAGGTATTTCGATAATCTTGCAAACCAAGGGTATTTCTGTAATTTTT
* ** * * *
76624683 GAAAGTCAAAGGTATTTCTTTAATCTTGTAAATCAGGGGTATTTCTGTAATTTTT
1 CAAA-TCAAAGGTATTTCGATAATCTTGCAAACCAAGGGTATTTCTGTAATTTTT
*
76624738 CAAATCAAGGGTAT
1 CAAATCAAAGGTAT
76624752 CTAGGTAATT
Statistics
Matches: 55, Mismatches: 13, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
54 12 0.22
55 43 0.78
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (54 bp):
CAAATCAAAGGTATTTCGATAATCTTGCAAACCAAGGGTATTTCTGTAATTTTT
Found at i:76625337 original size:821 final size:821
Alignment explanation
Indices: 76623754--76626217 Score: 4489
Period size: 821 Copynumber: 3.0 Consensus size: 821
76623744 GGTCTTTTTG
* * *
76623754 CCTATTAGGGGTATTTTAGCCATTTCACCCTACAAGAGTGTTTTGGTAAATCTATAAACCAATGG
1 CCTATTAGGGGTATTTTAGCCATTTCACCCTACAAGGGTGTTTTGGTAAATCTACAAACCAAGGG
76623819 TATTTCGATAATTTTGCAAACCAATGGTATTTTTGTAATTTTTGAAAGTCAAAGGTATTTCTTTA
66 TATTTCGATAATTTTGCAAACCAATGGTATTTTTGTAATTTTTGAAAGTCAAAGGTATTTCTTTA
*
76623884 ATCTTGTAAATCAGGGGTATTTCTGTAATTTTTCAAATCAAGGGTATCTCGGTAATTTTCAAAAT
131 ATCTTGTAAATCAGGGGTATTTCTGTAATTTTTCAAATCAAGGGTATCTAGGTAATTTTCAAAAT
76623949 TGAGGGTATTTCAGAAATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAGGTCAAGGGTATTT
196 TGAGGGTATTTCAGAAATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAGGTCAAGGGTATTT
76624014 CGGTAATTTTACAAGTCGAAGGTATTTCGGTAATTTTACTGGTCGAGGGTATTTCGATAATTTCA
261 CGGTAATTTTACAAGTCGAAGGTATTTCGGTAATTTTACTGGTCGAGGGTATTTCGATAATTTCA
76624079 CAAATTAGGGATATTTTGGTAATTTTACAAACCAGGGTTGTTTTGGTAATTTTACAAACTAGGGG
326 CAAATTAGGGATATTTTGGTAATTTTACAAACCAGGGTTGTTTTGGTAATTTTACAAACTAGGGG
76624144 TATTTTGGTAATTTTACAAACCAATGGTATTCATTAATTTCAGTAAATCTGTAAACTAAGGGTAT
391 TATTTTGGTAATTTTACAAACCAATGGTATTCATTAATTTCAGTAAATCTGTAAACTAAGGGTAT
76624209 TTTAGTAATTTTACCCTACAGGGGCATTTCAGTAATACTAGCCTACAGATATGAGATTCACATAG
456 TTTAGTAATTTTACCCTACAGGGGCATTTCAGTAATACTAGCCTACAGATATGAGATTCACATAG
76624274 TCCAATCCAATATTTACTACACAATCATACAATTTATCCACTTGGGCCCGCATGGCCCATCTCGA
521 TCCAATCCAATATTTACTACACAATCATACAATTTATCCACTTGGGCCCGCATGGCCCATCTCGA
*
76624339 CCCATCGTGGCCCAAAGCAACCTAAGCCCACGAGAGCACTCATGATTAACTCAACCATCACGTTA
586 CCCATCGTGGCCCAAAGCAACCTAAGCCCACGAGAGCACTCATGATTACCTCAACCATCACGTTA
*
76624404 AAACTCCTACACGTGCGCTCGCACGCTTGTGTGGCAGCAATCGCCGTGTGACCGGCATTTCGGCA
651 AAACTCCTACACGTGCGCTCGCACGCTTGTGTGGCAGCCATCGCCGTGTGACCGGCATTTCGGCA
76624469 TTTGCCATTCTACAGCTAGAGTAGTGCGAAATACACATCTGTTTATGAGCATGTGCTGAAGTCCA
716 TTTGCCATTCTACAGCTAGAGTAGTGCGAAATACACATCTGTTTATGAGCATGTGCTGAAGTCCA
76624534 CGATCACCAACTTTGGCACATCCTGCATTCAGTCTTAATCA
781 CGATCACCAACTTTGGCACATCCTGCATTCAGTCTTAATCA
76624575 CCTATTAGGGGTATTTTAGCCATTTCACCCTACAAGGGTGTTTTGGTAAATCTACAAACCAAGGG
1 CCTATTAGGGGTATTTTAGCCATTTCACCCTACAAGGGTGTTTTGGTAAATCTACAAACCAAGGG
76624640 TATTTCGATAATTTTGCAAACCAATGGTATTTTTGTAATTTTTGAAAGTCAAAGGTATTTCTTTA
66 TATTTCGATAATTTTGCAAACCAATGGTATTTTTGTAATTTTTGAAAGTCAAAGGTATTTCTTTA
76624705 ATCTTGTAAATCAGGGGTATTTCTGTAATTTTTCAAATCAAGGGTATCTAGGTAATTTTCAAAAT
131 ATCTTGTAAATCAGGGGTATTTCTGTAATTTTTCAAATCAAGGGTATCTAGGTAATTTTCAAAAT
76624770 TGAGGGTATTTCAGAAATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAGGTCAAGGGTATTT
196 TGAGGGTATTTCAGAAATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAGGTCAAGGGTATTT
76624835 CGGTAATTTTACAAGTCGAAGGTATTTCGGTAATTTTACTGGTCGAGGGTATTTCGATAATTTCA
261 CGGTAATTTTACAAGTCGAAGGTATTTCGGTAATTTTACTGGTCGAGGGTATTTCGATAATTTCA
76624900 CAAATTAGGGATATTTTGGTAATTTTACAAACCAGGGTTGTTTTGGTAATTTTACAAACTAGGGG
326 CAAATTAGGGATATTTTGGTAATTTTACAAACCAGGGTTGTTTTGGTAATTTTACAAACTAGGGG
*
76624965 TATTTTGGTAATTTTACAAACCAATGGTATTCATTAATTTCAGTAAATCTATAAACTAAGGGTAT
391 TATTTTGGTAATTTTACAAACCAATGGTATTCATTAATTTCAGTAAATCTGTAAACTAAGGGTAT
76625030 TTTAGTAATTTTACCCTACAGGGGCATTTCAGTAATACTAGCCTACAGATATGAGATTCACATAG
456 TTTAGTAATTTTACCCTACAGGGGCATTTCAGTAATACTAGCCTACAGATATGAGATTCACATAG
*
76625095 TCCAATCCAATATTTACTACACAATCATACAATTTATCCACTTGGGCCTGCATGGCCCATCTCGA
521 TCCAATCCAATATTTACTACACAATCATACAATTTATCCACTTGGGCCCGCATGGCCCATCTCGA
76625160 CCCATCGTGGCCCAAAGCAACCTAAGCCCACGAGAGCACTCATGATTACCTCAACCATCACGTTA
586 CCCATCGTGGCCCAAAGCAACCTAAGCCCACGAGAGCACTCATGATTACCTCAACCATCACGTTA
*
76625225 AAACTCCTACACGTGCGCTCGCACGCTTGTGTGGCAGCCATCGCCGTGTGACCGGCATTTCAGCA
651 AAACTCCTACACGTGCGCTCGCACGCTTGTGTGGCAGCCATCGCCGTGTGACCGGCATTTCGGCA
76625290 TTTGCCATTCTACAGCTAGAGTAGTGCGAAATACACATCTGTTTATGAGCATGTGCTGAAGTCCA
716 TTTGCCATTCTACAGCTAGAGTAGTGCGAAATACACATCTGTTTATGAGCATGTGCTGAAGTCCA
76625355 CGATCACCAACTTTGGCACATCCTGCATTCAGTCTTAATCA
781 CGATCACCAACTTTGGCACATCCTGCATTCAGTCTTAATCA
*
76625396 CCTATTAGGGGTATTTTAACCATTTCACCCTACAAGGGTGTTTTGGTAAATCTACAAACCAAGGG
1 CCTATTAGGGGTATTTTAGCCATTTCACCCTACAAGGGTGTTTTGGTAAATCTACAAACCAAGGG
76625461 TATTTCGATAATTTTGCAAACCAATGGTATTTTTGTAATTTTTGAAAGTCAAAGGTATTTCTTTA
66 TATTTCGATAATTTTGCAAACCAATGGTATTTTTGTAATTTTTGAAAGTCAAAGGTATTTCTTTA
*
76625526 ATCTTGTAAATCAGGGGCATTTCTGTAATTTTTCAAATCAAGGGTATCTCA-GTAATTTTCAAAA
131 ATCTTGTAAATCAGGGGTATTTCTGTAATTTTTCAAATCAAGGGTATCT-AGGTAATTTTCAAAA
* * * * ** *
76625590 TCGAGGGTATTTCGGCAATTTTACAAGTCGAGGGTATTTCAGTAATTTTGTAGGTCAAAGGTATT
195 TTGAGGGTATTTCAGAAATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAGGTCAAGGGTATT
* *
76625655 TCGGTAATTTTACAAGTTGAAGGTATTTCAGTAATTTTACTGGTCGAGGGTATTTCGATAATTTC
260 TCGGTAATTTTACAAGTCGAAGGTATTTCGGTAATTTTACTGGTCGAGGGTATTTCGATAATTTC
* * * *
76625720 ACAAATTAGGGATATTTTGGTAATTTTACAAACTAGAGTTATTTTGGTAATTTTACAAACCAGGG
325 ACAAATTAGGGATATTTTGGTAATTTTACAAACCAGGGTTGTTTTGGTAATTTTACAAACTAGGG
* *
76625785 CTATTTTGGTAATTTTACAAACCAATGGTATTCATTAATTTCAATAAATCTGTAAACTAAGGGTA
390 GTATTTTGGTAATTTTACAAACCAATGGTATTCATTAATTTCAGTAAATCTGTAAACTAAGGGTA
* * *
76625850 TTTCAGTAATTTTACCCTACAAGGGCATTTCAGTAATACTAGCCTACAGATATGAGATTCATATA
455 TTTTAGTAATTTTACCCTACAGGGGCATTTCAGTAATACTAGCCTACAGATATGAGATTCACATA
* *
76625915 GTCCAATCCAATATTTACTACACAATCATACAATTTATCCACTTGAGCCCACATGGCCCATCTCG
520 GTCCAATCCAATATTTACTACACAATCATACAATTTATCCACTTGGGCCCGCATGGCCCATCTCG
* * * ** * *
76625980 ACCCATCGTGGTCCAAAGCAACCTAAGCCCAGGAAAGCACTCATGATGGCCTCAACCATTACGTC
585 ACCCATCGTGGCCCAAAGCAACCTAAGCCCACGAGAGCACTCATGATTACCTCAACCATCACGTT
* * * * *
76626045 AAAACTCCCACACGTGCGCTTGCACGCTTTTGTGGCTGCCATCGCCGTGTGACCGGCATGTCGGC
650 AAAACTCCTACACGTGCGCTCGCACGCTTGTGTGGCAGCCATCGCCGTGTGACCGGCATTTCGGC
* * * *
76626110 ATTTGCCGTTCTGCAGCTAGAGTAGTGCGAAATACACATCTATTTATGAGCACGTGCTGAAGTCC
715 ATTTGCCATTCTACAGCTAGAGTAGTGCGAAATACACATCTGTTTATGAGCATGTGCTGAAGTCC
76626175 ACGATCACCAACTTTGGCACATCCTGCATTCAGTCTTAATCA
780 ACGATCACCAACTTTGGCACATCCTGCATTCAGTCTTAATCA
76626217 C
1 C
76626218 TTTTCCCCTT
Statistics
Matches: 1592, Mismatches: 50, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
821 1591 1.00
822 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (821 bp):
CCTATTAGGGGTATTTTAGCCATTTCACCCTACAAGGGTGTTTTGGTAAATCTACAAACCAAGGG
TATTTCGATAATTTTGCAAACCAATGGTATTTTTGTAATTTTTGAAAGTCAAAGGTATTTCTTTA
ATCTTGTAAATCAGGGGTATTTCTGTAATTTTTCAAATCAAGGGTATCTAGGTAATTTTCAAAAT
TGAGGGTATTTCAGAAATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAGGTCAAGGGTATTT
CGGTAATTTTACAAGTCGAAGGTATTTCGGTAATTTTACTGGTCGAGGGTATTTCGATAATTTCA
CAAATTAGGGATATTTTGGTAATTTTACAAACCAGGGTTGTTTTGGTAATTTTACAAACTAGGGG
TATTTTGGTAATTTTACAAACCAATGGTATTCATTAATTTCAGTAAATCTGTAAACTAAGGGTAT
TTTAGTAATTTTACCCTACAGGGGCATTTCAGTAATACTAGCCTACAGATATGAGATTCACATAG
TCCAATCCAATATTTACTACACAATCATACAATTTATCCACTTGGGCCCGCATGGCCCATCTCGA
CCCATCGTGGCCCAAAGCAACCTAAGCCCACGAGAGCACTCATGATTACCTCAACCATCACGTTA
AAACTCCTACACGTGCGCTCGCACGCTTGTGTGGCAGCCATCGCCGTGTGACCGGCATTTCGGCA
TTTGCCATTCTACAGCTAGAGTAGTGCGAAATACACATCTGTTTATGAGCATGTGCTGAAGTCCA
CGATCACCAACTTTGGCACATCCTGCATTCAGTCTTAATCA
Found at i:76625480 original size:27 final size:27
Alignment explanation
Indices: 76625450--76625718 Score: 113
Period size: 27 Copynumber: 9.9 Consensus size: 27
76625440 GGTAAATCTA
*
76625450 CAAACCAAGGGTATTTCGATAATTTTG
1 CAAATCAAGGGTATTTCGATAATTTTG
* * *
76625477 CAAACCAATGGTATTTTTG-TAATTTTTG
1 CAAATCAAGGGTA-TTTCGATAA-TTTTG
* ** *
76625505 -AAAGTCAAAGGTATTTCTTTAATCTTG
1 CAAA-TCAAGGGTATTTCGATAATTTTG
* * * *
76625532 TAAATCAGGGGCATTTCTG-TAATTTTT
1 CAAATCAAGGGTATTTC-GATAATTTTG
*
76625559 CAAATCAAGGGTATCTC-AGTAATTTT-
1 CAAATCAAGGGTATTTCGA-TAATTTTG
* ** *
76625585 CAAAATCGAGGGTATTTCGGCAATTTTA
1 C-AAATCAAGGGTATTTCGATAATTTTG
* *
76625613 CAAGTCGAGGGTATTTC-AGTAATTTTG
1 CAAATCAAGGGTATTTCGA-TAATTTTG
* ** * * *
76625640 TAGGTCAAAGGTATTTCGGTAATTTTA
1 CAAATCAAGGGTATTTCGATAATTTTG
* * *
76625667 CAAGTTGAA-GGTATTTC-AGTAATTTTA
1 CAA-ATCAAGGGTATTTCGA-TAATTTTG
*** *
76625694 CTGGTCGAGGGTATTTCGATAATTT
1 CAAATCAAGGGTATTTCGATAATTT
76625719 CACAAATTAG
Statistics
Matches: 184, Mismatches: 41, Indels: 34
0.71 0.16 0.13
Matches are distributed among these distances:
26 3 0.02
27 154 0.84
28 27 0.15
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAATCAAGGGTATTTCGATAATTTTG
Found at i:76625637 original size:81 final size:80
Alignment explanation
Indices: 76625544--76625718 Score: 183
Period size: 81 Copynumber: 2.1 Consensus size: 80
76625534 AATCAGGGGC
* * *
76625544 ATTTCTGTAATTTT-TCAAATCAAGGGTATCTCAGTAATTTT-CAAAATCGAGGGTATTTCGGCA
1 ATTTC-GTAATTTTGT-AAATCAAAGGTATCTCAGTAATTTTAC-AAATCGAAGGTATTTCAGCA
76625607 ATTTTACAAGTCGAGGGT
63 ATTTTACAAGTCGAGGGT
** * * * * *
76625625 ATTTCAGTAATTTTGTAGGTCAAAGGTATTTCGGTAATTTTACAAGTTGAAGGTATTTCAGTAAT
1 ATTTC-GTAATTTTGTAAATCAAAGGTATCTCAGTAATTTTACAAATCGAAGGTATTTCAGCAAT
**
76625690 TTTACTGGTCGAGGGT
65 TTTACAAGTCGAGGGT
76625706 ATTTCGATAATTT
1 ATTTCG-TAATTT
76625719 CACAAATTAG
Statistics
Matches: 78, Mismatches: 13, Indels: 6
0.80 0.13 0.06
Matches are distributed among these distances:
80 1 0.01
81 75 0.96
82 2 0.03
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.40
Consensus pattern (80 bp):
ATTTCGTAATTTTGTAAATCAAAGGTATCTCAGTAATTTTACAAATCGAAGGTATTTCAGCAATT
TTACAAGTCGAGGGT
Found at i:76625707 original size:54 final size:54
Alignment explanation
Indices: 76625544--76625723 Score: 193
Period size: 54 Copynumber: 3.3 Consensus size: 54
76625534 AATCAGGGGC
* * * * * **
76625544 ATTTCTGTAATTTTTCAAATC-AAGGGTATCTCAGTAATTTTCAAAATCGAGGGT
1 ATTTCGGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTCTAGGTCGAGGGT
* * * * *
76625598 ATTTCGGCAATTTTACAAGTCGAGGGTATTTCAGTAATTTTGTAGGTCAAAGGT
1 ATTTCGGTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTCTAGGTCGAGGGT
*
76625652 ATTTCGGTAATTTTACAAGTTGAAGGTATTTCAGTAATTTTACT-GGTCGAGGGT
1 ATTTCGGTAATTTTACAAGTCGAAGGTATTTCAGTAATTTT-CTAGGTCGAGGGT
* *
76625706 ATTTCGATAATTTCACAA
1 ATTTCGGTAATTTTACAA
76625724 ATTAGGGATA
Statistics
Matches: 104, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
54 102 0.98
55 2 0.02
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (54 bp):
ATTTCGGTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTCTAGGTCGAGGGT
Found at i:76625735 original size:27 final size:26
Alignment explanation
Indices: 76625701--76625806 Score: 131
Period size: 27 Copynumber: 4.0 Consensus size: 26
76625691 TTACTGGTCG
* * * *
76625701 AGGGTATTTCGATAATTTCACAAATT
1 AGGGTATTTTGGTAATTTTACAAACT
76625727 AGGGATATTTTGGTAATTTTACAAACT
1 AGGG-TATTTTGGTAATTTTACAAACT
* *
76625754 AGAGTTATTTTGGTAATTTTACAAACC
1 AG-GGTATTTTGGTAATTTTACAAACT
76625781 AGGGCTATTTTGGTAATTTTACAAAC
1 AGGG-TATTTTGGTAATTTTACAAAC
76625807 CAATGGTATT
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 5 0.07
27 64 0.91
28 1 0.01
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACT
Found at i:76625736 original size:54 final size:54
Alignment explanation
Indices: 76625566--76625748 Score: 183
Period size: 54 Copynumber: 3.4 Consensus size: 54
76625556 TTTCAAATCA
* * ** * *
76625566 AGGGTATCTCAGTAATTTT-CAAAATCGAGGGTATTTCGGCAATTTTACAAGTCG
1 AGGGTATTTCAGTAATTTTACTAGGTCGAGGGTATTTCGGTAATTTTACAAGT-T
* * *
76625620 AGGGTATTTCAGTAATTTT-GTAGGTCAAAGGTATTTCGGTAATTTTACAAGTT
1 AGGGTATTTCAGTAATTTTACTAGGTCGAGGGTATTTCGGTAATTTTACAAGTT
* * * *
76625673 GAAGGTATTTCAGTAATTTTACT-GGTCGAGGGTATTTCGATAATTTCACAAATT
1 -AGGGTATTTCAGTAATTTTACTAGGTCGAGGGTATTTCGGTAATTTTACAAGTT
**
76625727 AGGGATATTTTGGTAATTTTAC
1 AGGG-TATTTCAGTAATTTTAC
76625749 AAACTAGAGT
Statistics
Matches: 107, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
53 3 0.03
54 103 0.96
55 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACTAGGTCGAGGGTATTTCGGTAATTTTACAAGTT
Found at i:76625816 original size:27 final size:26
Alignment explanation
Indices: 76625732--76625816 Score: 116
Period size: 27 Copynumber: 3.2 Consensus size: 26
76625722 AAATTAGGGA
* *
76625732 TATTTTGGTAATTTTACAAACTAGAGT
1 TATTTTGGTAATTTTACAAACCA-AGG
*
76625759 TATTTTGGTAATTTTACAAACCAGGG
1 TATTTTGGTAATTTTACAAACCAAGG
76625785 CTATTTTGGTAATTTTACAAACCAATGG
1 -TATTTTGGTAATTTTACAAACCAA-GG
76625813 TATT
1 TATT
76625817 CATTAATTTC
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.02
27 49 0.94
28 2 0.04
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.42
Consensus pattern (26 bp):
TATTTTGGTAATTTTACAAACCAAGG
Found at i:76625895 original size:27 final size:27
Alignment explanation
Indices: 76625843--76625897 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
76625833 TCTGTAAACT
* **
76625843 AAGGGTATTTCAGTAATTTTACCCTAC
1 AAGGGCATTTCAGTAATACTACCCTAC
*
76625870 AAGGGCATTTCAGTAATACTAGCCTAC
1 AAGGGCATTTCAGTAATACTACCCTAC
76625897 A
1 A
76625898 GATATGAGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (27 bp):
AAGGGCATTTCAGTAATACTACCCTAC
Found at i:76629157 original size:40 final size:41
Alignment explanation
Indices: 76629071--76629189 Score: 168
Period size: 40 Copynumber: 2.9 Consensus size: 41
76629061 TAAAAGCCAC
* * *
76629071 CGGTGGATCCACGGTCTTCAAGTAACCATGCGATCCTTAAT
1 CGGTGGATCCACGGTCATCAAGCAACCATGCGATCCTCAAT
* *
76629112 CGGTGGGTCCACGGTCATCAAGCAACCAT-TGATCCTCAAT
1 CGGTGGATCCACGGTCATCAAGCAACCATGCGATCCTCAAT
* *
76629152 CGGTGGATCCACGGTCGTCAAGCAACCATGCAATCCTC
1 CGGTGGATCCACGGTCATCAAGCAACCATGCGATCCTC
76629190 GAATTCTTCC
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
40 36 0.53
41 32 0.47
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.23
Consensus pattern (41 bp):
CGGTGGATCCACGGTCATCAAGCAACCATGCGATCCTCAAT
Found at i:76629546 original size:27 final size:27
Alignment explanation
Indices: 76629488--76629748 Score: 147
Period size: 27 Copynumber: 9.6 Consensus size: 27
76629478 ACAAACCAAT
* ** * *
76629488 GGTATTTCTATAATTTTTGAAAGTCAAA
1 GGTATTTCTGTAATTTTCCAAA-TCGAG
** *
76629516 GGTATTTCTGTAATTTTGTAAATCGGG
1 GGTATTTCTGTAATTTTCCAAATCGAG
* * **
76629543 GGTATTTTTTTAATTTTCCAAATAAAG
1 GGTATTTCTGTAATTTTCCAAATCGAG
76629570 GGTATTTC-GATAATTTTCCAAATCGAG
1 GGTATTTCTG-TAATTTTCCAAATCGAG
* * * * *
76629597 GGTATTTCAGAAATTTTACAAGTTGAG
1 GGTATTTCTGTAATTTTCCAAATCGAG
* * **
76629624 GATATTT-TGATAATTTTACAGGTCGAG
1 GGTATTTCTG-TAATTTTCCAAATCGAG
** * * *
76629651 GGTATTTCAATAATTTTACAAGTCGAA
1 GGTATTTCTGTAATTTTCCAAATCGAG
* *
76629678 GGTATTTCGGTAATTTCCCAAATC-AG
1 GGTATTTCTGTAATTTTCCAAATCGAG
* *
76629704 GAGTATTT-TGGTAATTTTACAAA-CCAGG
1 G-GTATTTCT-GTAATTTTCCAAATCGA-G
76629732 GGTATTT-TGGTAATTTT
1 GGTATTTCT-GTAATTTT
76629749 ATAAACCAAG
Statistics
Matches: 185, Mismatches: 40, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
26 4 0.02
27 159 0.86
28 22 0.12
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (27 bp):
GGTATTTCTGTAATTTTCCAAATCGAG
Found at i:76629612 original size:54 final size:54
Alignment explanation
Indices: 76629488--76629725 Score: 173
Period size: 54 Copynumber: 4.4 Consensus size: 54
76629478 ACAAACCAAT
* ** *
76629488 GGTATTTCTATAATTTTTGA-AAGTCAAA-GGTATTTCTG-TAATTTTGTAAATCGGG
1 GGTATTTCAATAA-TTTT-ACAAGT-AAAGGGTATTTC-GATAATTTTCCAAATCGAG
*** * *
76629543 GGTATTTTTTTAATTTTCCAAATAAAGGGTATTTCGATAATTTTCCAAATCGAG
1 GGTATTTCAATAATTTTACAAGTAAAGGGTATTTCGATAATTTTCCAAATCGAG
** * * * **
76629597 GGTATTTCAGA-AATTTTACAAGTTGAGGATATTTTGATAATTTTACAGGTCGAG
1 GGTATTTCA-ATAATTTTACAAGTAAAGGGTATTTCGATAATTTTCCAAATCGAG
* * *
76629651 GGTATTTCAATAATTTTACAAGTCGAA-GGTATTTCGGTAATTTCCCAAATC-AG
1 GGTATTTCAATAATTTTACAAGT-AAAGGGTATTTCGATAATTTTCCAAATCGAG
***
76629704 GAGTATTTTGGTAATTTTACAA
1 G-GTATTTCAATAATTTTACAA
76629726 ACCAGGGGTA
Statistics
Matches: 145, Mismatches: 31, Indels: 15
0.76 0.16 0.08
Matches are distributed among these distances:
53 8 0.06
54 125 0.86
55 12 0.08
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (54 bp):
GGTATTTCAATAATTTTACAAGTAAAGGGTATTTCGATAATTTTCCAAATCGAG
Found at i:76629735 original size:81 final size:81
Alignment explanation
Indices: 76629463--76629738 Score: 223
Period size: 81 Copynumber: 3.4 Consensus size: 81
76629453 AAACCAAGGC
* * * * * * *
76629463 TATTTTAGAAATTTCACAAACCAATGGTATTTCTATAATTTTTGA-AAGTCAAAGGTATTTCTGT
1 TATTTTGGTAATTTTACAAACCAAGGGTATTTCAATAA-TTTT-ACAAGTCGAAGGTATTTCAGT
** * *
76629527 AATTTTGTAAATCGGGGG
64 AATTTTACAAATCAGGAG
** * ** * * * * *
76629545 TATTTTTTTAATTTTCCAAATAAAGGGTATTTCGATAATTTTCCAAATCGAGGGTATTTCAGAAA
1 TATTTTGGTAATTTTACAAACCAAGGGTATTTCAATAATTTTACAAGTCGAAGGTATTTCAGTAA
* *
76629610 TTTTACAAGTTGAGGA-
66 TTTTACAA-ATCAGGAG
* *** * *
76629626 TATTTTGATAATTTTACAGGTCGAGGGTATTTCAATAATTTTACAAGTCGAAGGTATTTCGGTAA
1 TATTTTGGTAATTTTACAAACCAAGGGTATTTCAATAATTTTACAAGTCGAAGGTATTTCAGTAA
**
76629691 TTTCCCAAATCAGGAG
66 TTTTACAAATCAGGAG
*
76629707 TATTTTGGTAATTTTACAAACCAGGGGTATTT
1 TATTTTGGTAATTTTACAAACCAAGGGTATTT
76629739 TGGTAATTTT
Statistics
Matches: 147, Mismatches: 44, Indels: 7
0.74 0.22 0.04
Matches are distributed among these distances:
80 5 0.03
81 110 0.75
82 32 0.22
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.40
Consensus pattern (81 bp):
TATTTTGGTAATTTTACAAACCAAGGGTATTTCAATAATTTTACAAGTCGAAGGTATTTCAGTAA
TTTTACAAATCAGGAG
Found at i:76629749 original size:27 final size:27
Alignment explanation
Indices: 76629678--76629764 Score: 111
Period size: 27 Copynumber: 3.2 Consensus size: 27
76629668 ACAAGTCGAA
* ** *
76629678 GGTATTTCGGTAATTTCCCAAATCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
76629705 AGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
* *
76629732 GGTATTTTGGTAATTTTATAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
76629759 GGTATT
1 GGTATT
76629765 CAGTAATTTC
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACCAGG
Found at i:76629827 original size:27 final size:27
Alignment explanation
Indices: 76629797--76629861 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
76629787 AACCAAGGGT
* * *
76629797 ATTTCAATAATTTTACCATACAGGGGC
1 ATTTCAGTAATTCTACCATACAGCGGC
* * *
76629824 ATTTTAGTAATTCTACCCTACAGCGGT
1 ATTTCAGTAATTCTACCATACAGCGGC
76629851 ATTTCAGTAAT
1 ATTTCAGTAAT
76629862 ACTAGCCTAC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCATACAGCGGC
Found at i:76629870 original size:27 final size:27
Alignment explanation
Indices: 76629810--76629873 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
76629800 TCAATAATTT
* * * *
76629810 TACCATACAGGGGCATTTTAGTAATTC
1 TACCCTACAGCGGCATTTCAGTAATAC
*
76629837 TACCCTACAGCGGTATTTCAGTAATAC
1 TACCCTACAGCGGCATTTCAGTAATAC
*
76629864 TAGCCTACAG
1 TACCCTACAG
76629874 ATATGAGATT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (27 bp):
TACCCTACAGCGGCATTTCAGTAATAC
Found at i:76632855 original size:22 final size:22
Alignment explanation
Indices: 76632819--76632882 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
76632809 GCAAATACGT
76632819 TTGGCACACAA-CCATAATCAGG
1 TTGGCACA-AAGCCATAATCAGG
* *
76632841 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
**
76632863 TTGGTGCAAAGCCATAATCA
1 TTGGCACAAAGCCATAATCA
76632883 AAATAATTGG
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 28 0.85
23 2 0.06
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:76633396 original size:27 final size:28
Alignment explanation
Indices: 76633344--76633640 Score: 209
Period size: 27 Copynumber: 10.9 Consensus size: 28
76633334 TTTCATCTTA
* * * * *
76633344 CAAGGGTGTTTTGGTAAATCTACAAACT
1 CAAGGGTATTTCGGTAATTTTACAAAGT
* *
76633372 C-AGGGTATTTCGGTAATTTTGCAAA-C
1 CAAGGGTATTTCGGTAATTTTACAAAGT
** * * **
76633398 CAATAGCATTTCTGTAATTTTTGAAAGT
1 CAAGGGTATTTCGGTAATTTTACAAAGT
* * * **
76633426 CAAAGTTATTTCTGTAATTTTGTAAA-T
1 CAAGGGTATTTCGGTAATTTTACAAAGT
* *
76633453 CAAGGGTGTTTCTGTAATTTT-CTAAA-T
1 CAAGGGTATTTCGGTAATTTTAC-AAAGT
**
76633480 CAAGGGTATTTTAGTAATTTTACAAA-T
1 CAAGGGTATTTCGGTAATTTTACAAAGT
* * *
76633507 CAAGTGTTTTTCGATAATTTTAC-AAGT
1 CAAGGGTATTTCGGTAATTTTACAAAGT
* * ** *
76633534 CGAGGGTATTTCAGTAATTTT-TTAGGT
1 CAAGGGTATTTCGGTAATTTTACAAAGT
*
76633561 CAAGGGTATTTCGGTAATTTTAC-AGGT
1 CAAGGGTATTTCGGTAATTTTACAAAGT
* *
76633588 CAAGGGTATTTCGGTAATTTTA-TAGGT
1 CAAGGGTATTTCGGTAATTTTACAAAGT
*
76633615 CAAGGGTATTTTGGTAATTTTACAAA
1 CAAGGGTATTTCGGTAATTTTACAAA
76633641 CCAGGGATAT
Statistics
Matches: 216, Mismatches: 44, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
26 3 0.01
27 190 0.88
28 23 0.11
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.41
Consensus pattern (28 bp):
CAAGGGTATTTCGGTAATTTTACAAAGT
Found at i:76633651 original size:27 final size:26
Alignment explanation
Indices: 76633617--76633670 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
76633607 TTATAGGTCA
*
76633617 AGGGTATTTTGGTAATTTTACAAACC
1 AGGGTATTTTGGCAATTTTACAAACC
*
76633643 AGGGATATTTTGGCCATTTTACAAACC
1 AGGG-TATTTTGGCAATTTTACAAACC
76633670 A
1 A
76633671 AAGGTATTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (26 bp):
AGGGTATTTTGGCAATTTTACAAACC
Found at i:76633662 original size:54 final size:54
Alignment explanation
Indices: 76633452--76633663 Score: 153
Period size: 54 Copynumber: 3.9 Consensus size: 54
76633442 ATTTTGTAAA
* * ** * * **
76633452 TCAAGGGTGTTTCTGTAATTTT-CTA-AATCAAGGGTATTTTAGTAATTTTACAAA
1 TCAAGGGTATTTCGGTAATTTTAC-AGAA-CAAGGGTATTTCGGCAATTTTATAGG
* * * * * * * *
76633506 TCAAGTGTTTTTCGATAATTTTACA-AGTCGAGGGTATTTCAGTAATTTTTTAGG
1 TCAAGGGTATTTCGGTAATTTTACAGA-ACAAGGGTATTTCGGCAATTTTATAGG
** *
76633560 TCAAGGGTATTTCGGTAATTTTACAGGTCAAGGGTATTTCGGTAATTTTATAGG
1 TCAAGGGTATTTCGGTAATTTTACAGAACAAGGGTATTTCGGCAATTTTATAGG
* * * *
76633614 TCAAGGGTATTTTGGTAATTTTACA-AACCAGGGATATTTTGGCCATTTTA
1 TCAAGGGTATTTCGGTAATTTTACAGAACAAGGG-TATTTCGGCAATTTTA
76633664 CAAACCAAAG
Statistics
Matches: 129, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
53 5 0.04
54 123 0.95
55 1 0.01
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.42
Consensus pattern (54 bp):
TCAAGGGTATTTCGGTAATTTTACAGAACAAGGGTATTTCGGCAATTTTATAGG
Found at i:76633678 original size:27 final size:26
Alignment explanation
Indices: 76633619--76633678 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 26
76633609 ATAGGTCAAG
* *
76633619 GGTATTTTGGTAATTTTACAAACCAG
1 GGTATTTTGGCAATTTTACAAACCAA
*
76633645 GGATATTTTGGCCATTTTACAAACCAAA
1 GG-TATTTTGGCAATTTTACAAACC-AA
76633673 GGTATT
1 GGTATT
76633679 CAGTAATTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 2 0.07
27 24 0.83
28 3 0.10
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (26 bp):
GGTATTTTGGCAATTTTACAAACCAA
Found at i:76633785 original size:27 final size:27
Alignment explanation
Indices: 76633717--76633779 Score: 110
Period size: 27 Copynumber: 2.3 Consensus size: 27
76633707 GGGTATTTTT
76633717 AGTAATTCTATCCTACAGGAGCATTTC
1 AGTAATTCTATCCTACAGGAGCATTTC
76633744 AGTAATTCTATCCTACAAGG-GCATTTC
1 AGTAATTCTATCCTAC-AGGAGCATTTC
76633771 AGTAATTCT
1 AGTAATTCT
76633780 GCCCTATAGC
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
27 32 0.91
28 3 0.09
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (27 bp):
AGTAATTCTATCCTACAGGAGCATTTC
Found at i:76636624 original size:29 final size:29
Alignment explanation
Indices: 76636591--76636664 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
76636581 GTGACGAGAT
76636591 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
76636620 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
76636649 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76636665 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:76636680 original size:29 final size:29
Alignment explanation
Indices: 76636591--76636723 Score: 94
Period size: 29 Copynumber: 4.6 Consensus size: 29
76636581 GTGACGAGAT
* * **
76636591 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCT-GAAGTCGCA
* **
76636620 TGGCACTAAGTGTGC-ATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGA-GCT-GAAGTCGCA
*
76636649 TGGCACTAAGTGTGCGAGCTCGAAG-GGCA
1 TGGCACTAAGTGTGCGAGCT-GAAGTCGCA
** * *
76636678 TGGCACTGTGTGTGCGGGCTTAAGTCGCA
1 TGGCACTAAGTGTGCGAGCTGAAGTCGCA
76636707 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
76636724 AATCGAGTAT
Statistics
Matches: 87, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
28 3 0.03
29 83 0.95
30 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGAAGTCGCA
Found at i:76640744 original size:24 final size:24
Alignment explanation
Indices: 76640675--76640746 Score: 83
Period size: 24 Copynumber: 3.0 Consensus size: 24
76640665 ATTCAAATCA
* * * *
76640675 GCACACATAGTGCTAATCAACTCC
1 GCACACATAGTGCCAATCTACACT
76640699 GCACACATAGTGCC-ATACTACACT
1 GCACACATAGTGCCAAT-CTACACT
*
76640723 GCACACATAGTGCCAATGTACACT
1 GCACACATAGTGCCAATCTACACT
76640747 TTCTATGATA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
23 2 0.05
24 37 0.90
25 2 0.05
ACGTcount: A:0.33, C:0.32, G:0.14, T:0.21
Consensus pattern (24 bp):
GCACACATAGTGCCAATCTACACT
Found at i:76643380 original size:48 final size:48
Alignment explanation
Indices: 76643309--76643836 Score: 858
Period size: 48 Copynumber: 11.0 Consensus size: 48
76643299 AGATAAATAT
76643309 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
76643357 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
76643405 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
76643453 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
76643501 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
76643549 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
76643597 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
76643645 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCAAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
76643693 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
76643741 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
76643789 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
76643837 TGTTGTAACA
Statistics
Matches: 440, Mismatches: 40, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 440 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:76643483 original size:96 final size:96
Alignment explanation
Indices: 76643319--76643836 Score: 964
Period size: 96 Copynumber: 5.4 Consensus size: 96
76643309 ATATATGTGT
76643319 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTAGATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTAGATGTGGTA
76643384 AAGCCGAATGGCGAATGTGAAATATGTATGA
66 AAGCCGAATGGCGAATGTGAAATATGTATGA
76643415 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTAGATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTAGATGTGGTA
76643480 AAGCCGAATGGCGAATGTGAAATATGTATGA
66 AAGCCGAATGGCGAATGTGAAATATGTATGA
76643511 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTAGATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTAGATGTGGTA
76643576 AAGCCGAATGGCGAATGTGAAATATGTATGA
66 AAGCCGAATGGCGAATGTGAAATATGTATGA
76643607 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTAGATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTAGATGTGGTA
*
76643672 AAGCCGAATGGCAAATGTGAAATATGTATGA
66 AAGCCGAATGGCGAATGTGAAATATGTATGA
* * *
76643703 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTAGATGTGGTA
* * * *
76643768 AAGCCGAATGGCTAATGTGAAATATATGTGT
66 AAGCCGAATGGCGAATGTGAAATATGTATGA
76643799 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
76643837 TGTTGTAACA
Statistics
Matches: 414, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 414 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (96 bp):
GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTAGATGTGGTA
AAGCCGAATGGCGAATGTGAAATATGTATGA
Found at i:76643936 original size:37 final size:37
Alignment explanation
Indices: 76643881--76644003 Score: 219
Period size: 37 Copynumber: 3.3 Consensus size: 37
76643871 GGAAATATAT
* *
76643881 TCCGGGTGAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
76643918 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
76643955 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
76643992 TTCGGGTAAGAC
1 TCCGGGTAAGAC
76644004 TTCGTAATAA
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:76648677 original size:29 final size:29
Alignment explanation
Indices: 76648644--76648746 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
76648634 GTGACGAGAT
76648644 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
76648673 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
76648702 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
76648731 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
76648747 AGTTCGGAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:76651063 original size:26 final size:27
Alignment explanation
Indices: 76651009--76651063 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
76650999 ATTCAACACC
* * *
76651009 TAGGGGTATTTTGGTCATTTTTACTCT
1 TAGGGGCATTTCGGTAATTTTTACTCT
76651036 TAGGGGCATTTCGGTAATTTTT-CTCT
1 TAGGGGCATTTCGGTAATTTTTACTCT
76651062 TA
1 TA
76651064 TTACGGTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 6 0.24
27 19 0.76
ACGTcount: A:0.16, C:0.13, G:0.22, T:0.49
Consensus pattern (27 bp):
TAGGGGCATTTCGGTAATTTTTACTCT
Found at i:76651414 original size:30 final size:28
Alignment explanation
Indices: 76651321--76651418 Score: 92
Period size: 29 Copynumber: 3.4 Consensus size: 28
76651311 TACATACATG
*
76651321 CATATGGCCCACTAGGTCCAA-TCTTATT
1 CATATGGCCCACTAGGCCCAATTC-TATT
* *
76651349 CAAATGGCCCATCTA-GCCCAGTTCATATT
1 CATATGGCCCA-CTAGGCCCAATTC-TATT
* *
76651378 CTTATGGCCCCACCAGGCCCAATTCTCATT
1 CATATGG-CCCACTAGGCCCAATTCT-ATT
76651408 CATATGGCCCA
1 CATATGGCCCA
76651419 ATAGCCTCAA
Statistics
Matches: 56, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
28 14 0.25
29 21 0.38
30 21 0.38
ACGTcount: A:0.24, C:0.34, G:0.14, T:0.28
Consensus pattern (28 bp):
CATATGGCCCACTAGGCCCAATTCTATT
Found at i:76651434 original size:59 final size:57
Alignment explanation
Indices: 76651323--76651436 Score: 131
Period size: 59 Copynumber: 2.0 Consensus size: 57
76651313 CATACATGCA
* * * * **
76651323 TATGGCCCACTAGGTCCAATCTTATTCAAATGGCCCATCTAGCCCAGTTCATATTCT
1 TATGGCCCACCAGGCCCAATCTCATTCAAATGGCCCATATAGCCCAAATCATATTCT
*
76651380 TATGGCCCCACCAGGCCCAATTCTCATTCATATGGCCCA-ATAGCCTCAAATCATATT
1 TATGG-CCCACCAGGCCCAA-TCTCATTCAAATGGCCCATATAGCC-CAAATCATATT
76651437 ATATTTATAC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
57 5 0.11
58 17 0.36
59 25 0.53
ACGTcount: A:0.26, C:0.32, G:0.13, T:0.29
Consensus pattern (57 bp):
TATGGCCCACCAGGCCCAATCTCATTCAAATGGCCCATATAGCCCAAATCATATTCT
Found at i:76651542 original size:19 final size:18
Alignment explanation
Indices: 76651509--76651545 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
76651499 TGGGCCCAAC
76651509 AGCCCATCAGGCCCATTT
1 AGCCCATCAGGCCCATTT
*
76651527 AGCCCATTCCGGCCCATTT
1 AGCCCA-TCAGGCCCATTT
76651546 GGCCAATTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.19, C:0.41, G:0.16, T:0.24
Consensus pattern (18 bp):
AGCCCATCAGGCCCATTT
Found at i:76651554 original size:19 final size:19
Alignment explanation
Indices: 76651518--76651554 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
76651508 CAGCCCATCA
*
76651518 GGCCCATTTAGCCCATTCC
1 GGCCCATTTAGCCAATTCC
*
76651537 GGCCCATTTGGCCAATTC
1 GGCCCATTTAGCCAATTC
76651555 TCAACCCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.38, G:0.19, T:0.27
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCC
Found at i:76653517 original size:101 final size:101
Alignment explanation
Indices: 76653389--76653570 Score: 301
Period size: 101 Copynumber: 1.8 Consensus size: 101
76653379 CTAGTACACG
* * * * **
76653389 TAGTAGCCTGCACTTAGTACTAGACATGTGACTTATCCATTTGATACACGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACACGTAGTAGCCTACACTT
*
76653454 AGTACTACCCACATGATCGAAGTTAACGGGTACGTA
66 AGTACTACACACATGATCGAAGTTAACGGGTACGTA
76653490 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACACGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACACGTAGTAGCCTACACTT
76653555 AGTACTACACACATGA
66 AGTACTACACACATGA
76653571 CCTAACCATC
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 74 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACACGTAGTAGCCTACACTT
AGTACTACACACATGATCGAAGTTAACGGGTACGTA
Found at i:76653605 original size:151 final size:151
Alignment explanation
Indices: 76653331--76653726 Score: 551
Period size: 151 Copynumber: 2.6 Consensus size: 151
76653321 GAGGCTCTCT
* *
76653331 GGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAAT-CTAGTACACGTAGTAG
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGA-TACACGTAGTAG
* ** * * * * *
76653395 CCTGCACTTAGTACTAGACATGTGACTTATCCATTTGATACACGTAGTAGCCTACACTTAGTACT
65 CCTGCACTTAGTACTACACACATGACCTAACCATCTGATACACATAGTAGCCAACACTTAGTACT
* ** *
76653460 ACCCACATGATCGAAGTTAACG
130 ACACACATGATCGAAACTAACA
*
76653482 GGTACGTATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACACGTAGTAGC
* *
76653547 CTACACTTAGTACTACACACATGACCTAACCATCTGATACACATAGTAGCCAACACTTAGTACTT
66 CTGCACTTAGTACTACACACATGACCTAACCATCTGATACACATAGTAGCCAACACTTAGTACTA
* *
76653612 CACACGTGATCGAAACTATCA
131 CACACATGATCGAAACTAACA
* * * * * *
76653633 GGTATGCGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTATC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACACGTAGTAGC
76653698 CTGCACTTAGTACTACACACATGACCTAA
66 CTGCACTTAGTACTACACACATGACCTAA
76653727 AACTGTCTTA
Statistics
Matches: 217, Mismatches: 27, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
151 215 0.99
152 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACACGTAGTAGC
CTGCACTTAGTACTACACACATGACCTAACCATCTGATACACATAGTAGCCAACACTTAGTACTA
CACACATGATCGAAACTAACA
Found at i:76653724 original size:50 final size:50
Alignment explanation
Indices: 76653328--76653726 Score: 341
Period size: 50 Copynumber: 7.9 Consensus size: 50
76653318 ACCGAGGCTC
* * * * * *
76653328 TCTGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * * * *
76653378 TCTAGTACACGTAGTAGCCTGCACTTAGTACTAGACATGTGACTTATCCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * * * * * *
76653428 TTTGATACACGTAGTAGCCTACACTTAGTACTACCCACATGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA--CAA
* *** * * *
76653480 -CGGGTACGTATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * * *
76653529 TCCGATACACGTAGTAGCCTACACTTAGTACTACACACATGACCTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * ** * ** *
76653579 TCTGATACACATAGTAGCCAACACTTAGTACTTCACACGTGATCGAAACTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAACAA
* ** * *
76653630 TCAGGTATGCGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* *
76653680 TCTGGTACACGTAGTATCCTGCACTTAGTACTACACACATGACCTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
76653727 AACTGTCTTA
Statistics
Matches: 269, Mismatches: 76, Indels: 8
0.76 0.22 0.02
Matches are distributed among these distances:
49 2 0.01
50 197 0.73
51 69 0.26
52 1 0.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
Found at i:76655765 original size:25 final size:25
Alignment explanation
Indices: 76655736--76655792 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
76655726 TGAATCAATA
76655736 AACTCATAAGTAAAATATCAAACAT
1 AACTCATAAGTAAAATATCAAACAT
*
76655761 AACTCATGAGTAAAATATCAAACAT
1 AACTCATAAGTAAAATATCAAACAT
76655786 AAC-CATA
1 AACTCATA
76655793 CTTATATATA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
24 3 0.10
25 27 0.90
ACGTcount: A:0.54, C:0.18, G:0.05, T:0.23
Consensus pattern (25 bp):
AACTCATAAGTAAAATATCAAACAT
Found at i:76655824 original size:15 final size:16
Alignment explanation
Indices: 76655804--76655833 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
76655794 TTATATATAT
76655804 CAAAACCA-AATCAAC
1 CAAAACCATAATCAAC
76655819 CAAAACCATAATCAA
1 CAAAACCATAATCAA
76655834 ACATAATCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.60, C:0.30, G:0.00, T:0.10
Consensus pattern (16 bp):
CAAAACCATAATCAAC
Found at i:76657226 original size:43 final size:42
Alignment explanation
Indices: 76657053--76657229 Score: 155
Period size: 43 Copynumber: 4.1 Consensus size: 42
76657043 TAACGCATAT
* * *
76657053 CATA-CAATGCCAACGTCCCATACGTGGTCTTACATGTAATCA
1 CATATCAATGCCAACGTCCCAGACGTGGTCTTACACG-AAACA
* * *
76657095 CATGTCGATGCC-ACTGTCCCAGACAG-GGTCTTACACGAATCA
1 CATATCAATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAACA
* * * * * *
76657137 CA-ATTACGATGCCGATGTCCAAGACATGGTCTTACTCGAAATCA
1 CATA-T-CAATGCCAACGTCCCAGACGTGGTCTTACACGAAA-CA
76657181 CATATCAATGCCAACGTCCCAGACGTGGTCTTACACGAGAACA
1 CATATCAATGCCAACGTCCCAGACGTGGTCTTACACGA-AACA
76657224 CATATC
1 CATATC
76657230 GGAAATCCTA
Statistics
Matches: 109, Mismatches: 16, Indels: 19
0.76 0.11 0.13
Matches are distributed among these distances:
42 13 0.12
43 86 0.79
44 9 0.08
45 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.23
Consensus pattern (42 bp):
CATATCAATGCCAACGTCCCAGACGTGGTCTTACACGAAACA
Done.