Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 267 of 444
Found at i:76658619 original size:27 final size:27
Alignment explanation
Indices: 76658589--76658695 Score: 142
Period size: 27 Copynumber: 4.0 Consensus size: 27
76658579 AATCTCATAT
* *
76658589 CTGTAGGCTAGCATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
76658616 CTGTAGGGTAGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* * * *
76658643 TTGAAGTGTAGAATTACTGAAATGCCC
1 CTGTAGGGTAGAATTACTGAAATACCC
**
76658670 CTGTAGGGTAGAATTACAAAAATACC
1 CTGTAGGGTAGAATTACTGAAATACC
76658696 ATTGGTTTAC
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACTGAAATACCC
Found at i:76658711 original size:27 final size:27
Alignment explanation
Indices: 76658681--76658847 Score: 158
Period size: 27 Copynumber: 6.2 Consensus size: 27
76658671 TGTAGGGTAG
* ** *
76658681 AATTACAAAAATACCATTGGTTTACAA
1 AATTACCAAAATACCCCTGGTTTATAA
*
76658708 AATTACCAAAAGACCCCTGGTTTATAA
1 AATTACCAAAATACCCCTGGTTTATAA
* * *
76658735 AATTACCAAATTACCCTTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTATAA
* *
76658762 AATTACCAAAATACCCCTGATTTATGA
1 AATTACCAAAATACCCCTGGTTTATAA
** *
76658789 AATTA-CAGAAATA-CCCTCGACTTGTAA
1 AATTACCA-AAATACCCCT-GGTTTATAA
* * *
76658816 AATTACCAAAATACCCCCGATTTATAG
1 AATTACCAAAATACCCCTGGTTTATAA
76658843 AATTA
1 AATTA
76658848 ATATTTTACC
Statistics
Matches: 115, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
26 6 0.05
27 104 0.90
28 5 0.04
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGGTTTATAA
Found at i:76658725 original size:54 final size:53
Alignment explanation
Indices: 76658667--76658803 Score: 121
Period size: 54 Copynumber: 2.5 Consensus size: 53
76658657 TACTGAAATG
* *
76658667 CCCCTGTAGGGTAGAATTACAAAAATACCATTGGTTTACAAAATTACCAAAAGA
1 CCCCTGT-GGATAAAATTACAAAAATACCATTGGTTTACAAAATTACCAAAAGA
** * * * ** *
76658721 CCCCTGGTTTATAAAATTACCAAATTACCCTTGGTTTGTAAAATTACCAAAATA
1 CCCCT-GTGGATAAAATTACAAAAATACCATTGGTTTACAAAATTACCAAAAGA
** * *
76658775 CCCCTGATTTATGAAATTACAGAAATACC
1 CCCCTG-TGGATAAAATTACAAAAATACC
76658804 CTCGACTTGT
Statistics
Matches: 67, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
53 1 0.01
54 64 0.96
55 2 0.03
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.28
Consensus pattern (53 bp):
CCCCTGTGGATAAAATTACAAAAATACCATTGGTTTACAAAATTACCAAAAGA
Found at i:76658804 original size:54 final size:53
Alignment explanation
Indices: 76658681--76658847 Score: 199
Period size: 54 Copynumber: 3.1 Consensus size: 53
76658671 TGTAGGGTAG
* ** * *
76658681 AATTACAAAAATACCATTGGTTTACAAAATTACCAAAAGACCCCTGGTTTATAA
1 AATTAC-AAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGATTTATAA
* *
76658735 AATTACCAAATTACCCTTGGTTTGTAAAATTACCAAAATACCCCTGATTTATGA
1 AATTA-CAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGATTTATAA
* ** * *
76658789 AATTACAGAAATACCCTCGACTTGTAAAATTACCAAAATACCCCCGATTTATAG
1 AATTACA-AAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGATTTATAA
76658843 AATTA
1 AATTA
76658848 ATATTTTACC
Statistics
Matches: 97, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
53 2 0.02
54 94 0.97
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.29
Consensus pattern (53 bp):
AATTACAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGATTTATAA
Found at i:76658900 original size:27 final size:27
Alignment explanation
Indices: 76658877--76658949 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 27
76658867 CAAAATTATT
76658877 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
76658904 GAAATACCCCTGTAGGGTAGGACTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
** *
76658931 GATTTACCCCTGGAGGGTA
1 GAAATACCCCTGTAGGGTA
76658950 AAATGACTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:76660282 original size:27 final size:27
Alignment explanation
Indices: 76660217--76660395 Score: 254
Period size: 27 Copynumber: 6.7 Consensus size: 27
76660207 TTTGGTTTAC
76660217 AAAATTACCAAAATA-CCCT-GCTTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
* * * *
76660243 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGT
76660270 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
76660297 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
76660324 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
76660351 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* **
76660378 GAAATTACTGAAATACCC
1 AAAATTACCAAAATACCC
76660396 TCGACCTGTA
Statistics
Matches: 138, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
26 14 0.10
27 123 0.89
28 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:76660338 original size:81 final size:80
Alignment explanation
Indices: 76660217--76660449 Score: 272
Period size: 81 Copynumber: 2.9 Consensus size: 80
76660207 TTTGGTTTAC
* *
76660217 AAAATTACCAAAATACCCTGCTTTGTAAAATTA-CTAAAATACCCTTGGTTTATAAAATTACCAA
1 AAAATTACCAAAATACCCTGATTTGTAAAATTATC-AAAATACCCTTGGTTTGTAAAATTACCAA
*
76660281 AATACCCCTAGTTTGT
65 AATACCCCTAATTTGT
* *
76660297 AAAATTACCAAAATACCCCT-AGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCA
1 AAAATTACCAAAATA-CCCTGA-TTTGTAAAATTATCAAAATACCCTTGGTTTGTAAAATTACCA
76660361 AAATACCCCTAATTTGT
64 AAATACCCCTAATTTGT
* ** ** ** * **
76660378 GAAATTACTGAAATACCCTCGACCTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCT-GATTTGTAAAATTATCAAAATACCCTTGGTTTGTAAAATTACCAA
*
76660443 AGTACCC
65 AATACCC
76660450 TCGATTTATA
Statistics
Matches: 130, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
80 19 0.15
81 109 0.84
82 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTGATTTGTAAAATTATCAAAATACCCTTGGTTTGTAAAATTACCAAA
ATACCCCTAATTTGT
Found at i:76660409 original size:27 final size:27
Alignment explanation
Indices: 76660379--76660453 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
76660369 CTAATTTGTG
76660379 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* *
76660406 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
*
76660433 AAATTAC-CAAAGTACCCTCGA
1 AAATTACTGAAA-TACCCTCGA
76660454 TTTATAGAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.07
27 40 0.93
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.27
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:76660654 original size:160 final size:162
Alignment explanation
Indices: 76660445--76660761 Score: 460
Period size: 160 Copynumber: 2.0 Consensus size: 162
76660435 ATTACCAAAG
* ** *
76660445 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTCACCCTCGATT
* * *
76660510 TACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTACCCTCGATTTATAGAATTA
66 TACAGAATTACCATTTTACCCTCGA-TTTACAGAATTACTATTTTACCCTCGATTTACAAAATTA
*
76660574 CCGTTTTACCC-CAATTTACATAATTACCGTTT
130 CCGTTTTACCCTCAATTTACAAAATTACCGTTT
* * *
76660606 TACCC-CGATTTACATAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTCACCCTCGATT
* * *
76660670 TACAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAAAATTAC
66 TACAGAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
* *
76660735 TGTTTTACCCTCGATTTACAAAATTAC
131 CGTTTTACCCTCAATTTACAAAATTAC
76660762 TAAAATACCC
Statistics
Matches: 138, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
160 118 0.86
161 20 0.14
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (162 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTCACCCTCGATT
TACAGAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
CGTTTTACCCTCAATTTACAAAATTACCGTTT
Found at i:76660762 original size:27 final size:27
Alignment explanation
Indices: 76660445--76660761 Score: 433
Period size: 27 Copynumber: 11.8 Consensus size: 27
76660435 ATTACCAAAG
*
76660445 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
** *
76660472 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
76660499 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
76660526 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
*
76660553 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
76660580 TACCC-CAATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
76660606 TACCC-CGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
76660632 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
76660659 CACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
76660686 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
76660713 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
76660740 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
76660762 TAAAATACCC
Statistics
Matches: 260, Mismatches: 27, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
26 48 0.18
27 211 0.81
28 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:76660798 original size:81 final size:81
Alignment explanation
Indices: 76660432--76660805 Score: 252
Period size: 81 Copynumber: 4.6 Consensus size: 81
76660422 CTCGACTTGT
* *** **
76660432 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCGT
1 AAAATTACCAAAATACCCTCGATTTATAGAATTACCGCAATACCCTCGATTTACAAAATTACCGT
*
76660497 TTTACCCTCGATTTAC
66 TTCACCCTCGATTTAC
* **** * ***** * *
76660513 AGAATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCG
1 AAAATTACCAAAATACCCTCGA-TTTATAGAATTACCGCAATACCCTCGATTTACAAAATTACCG
* *
76660577 TTTTACCC-CAATTTAC
65 TTTCACCCTCGATTTAC
* **** * * * *** *
76660593 ATAATTACCGTTTTACCC-CGATTTACATAATTATCGTTTTACCCTCGATTTACAGAATTACCGT
1 AAAATTACCAAAATACCCTCGATTTATAGAATTACCGCAATACCCTCGATTTACAAAATTACCGT
76660657 TTCACCCTCGATTTAC
66 TTCACCCTCGATTTAC
* *** * *** * *
76660673 AGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAAAATTACTGT
1 AAAATTACCAAAATACCCTCGATTTATAGAATTACCGCAATACCCTCGATTTACAAAATTACCGT
*
76660738 TTTACCCTCGATTTAC
66 TTCACCCTCGATTTAC
* * * * *
76660754 AAAATTACTAAAATACCCTTGGTTTGT-GAAATTACCGCAATACCCTCAATTT
1 AAAATTACCAAAATACCCTCGATTTATAG-AATTACCGCAATACCCTCGATTT
76660806 GTAAAACTAC
Statistics
Matches: 245, Mismatches: 43, Indels: 10
0.82 0.14 0.03
Matches are distributed among these distances:
79 45 0.18
80 50 0.20
81 150 0.61
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCGATTTATAGAATTACCGCAATACCCTCGATTTACAAAATTACCGT
TTCACCCTCGATTTAC
Found at i:76662094 original size:9 final size:9
Alignment explanation
Indices: 76662082--76662138 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
76662072 TTTGATAAAC
76662082 ATGATATGT
1 ATGATATGT
*
76662091 ATGATATGCAC
1 ATGATATG--T
*
76662102 ATGACATGT
1 ATGATATGT
*
76662111 ATGATATGCAC
1 ATGATATG--T
76662122 ATGATATGT
1 ATGATATGT
76662131 ATGATATG
1 ATGATATG
76662139 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:76662105 original size:20 final size:20
Alignment explanation
Indices: 76662080--76662142 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
76662070 ATTTTGATAA
76662080 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
76662100 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
76662120 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
76662140 ACA
1 ACA
76662143 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:76662252 original size:24 final size:23
Alignment explanation
Indices: 76662196--76662385 Score: 274
Period size: 24 Copynumber: 8.0 Consensus size: 23
76662186 GAGGAAGTGA
76662196 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
76662219 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
76662242 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
76662266 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
76662290 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
76662314 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
76662337 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
76662361 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
76662385 A
1 A
76662386 TGATAAAGCA
Statistics
Matches: 154, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
23 63 0.41
24 81 0.53
25 10 0.06
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:76662265 original size:47 final size:47
Alignment explanation
Indices: 76662196--76662363 Score: 293
Period size: 47 Copynumber: 3.6 Consensus size: 47
76662186 GAGGAAGTGA
76662196 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
76662243 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
*
76662291 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
76662337 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
76662364 AGAGGCTAGG
Statistics
Matches: 115, Mismatches: 5, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
46 25 0.22
47 45 0.39
48 45 0.39
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:76662319 original size:71 final size:70
Alignment explanation
Indices: 76662196--76662384 Score: 274
Period size: 71 Copynumber: 2.7 Consensus size: 70
76662186 GAGGAAGTGA
* *
76662196 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCCA
76662261 GTTAT
66 GTTAT
*
76662266 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT-TAAAGGGCTTATGCCC
1 -AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCC
76662330 CAGTTAT
64 CAGTTAT
* *
76662337 AAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTACGCC-CCAGTTAT
76662385 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
70 31 0.28
71 57 0.52
72 21 0.19
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (70 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTAT
Found at i:76662613 original size:31 final size:31
Alignment explanation
Indices: 76662575--76662638 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
76662565 CCGTTTACGT
*
76662575 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
76662606 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
76662637 AA
1 AA
76662639 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:76665486 original size:27 final size:27
Alignment explanation
Indices: 76665421--76665599 Score: 254
Period size: 27 Copynumber: 6.7 Consensus size: 27
76665411 TTTGGTTTAC
76665421 AAAATTACCAAAATA-CCCT-GCTTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
* * * *
76665447 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGT
76665474 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
76665501 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
76665528 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
76665555 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* **
76665582 GAAATTACTGAAATACCC
1 AAAATTACCAAAATACCC
76665600 TCGACCTGTA
Statistics
Matches: 138, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
26 14 0.10
27 123 0.89
28 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:76665542 original size:81 final size:80
Alignment explanation
Indices: 76665421--76665653 Score: 272
Period size: 81 Copynumber: 2.9 Consensus size: 80
76665411 TTTGGTTTAC
* *
76665421 AAAATTACCAAAATACCCTGCTTTGTAAAATTA-CTAAAATACCCTTGGTTTATAAAATTACCAA
1 AAAATTACCAAAATACCCTGATTTGTAAAATTATC-AAAATACCCTTGGTTTGTAAAATTACCAA
*
76665485 AATACCCCTAGTTTGT
65 AATACCCCTAATTTGT
* *
76665501 AAAATTACCAAAATACCCCT-AGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCA
1 AAAATTACCAAAATA-CCCTGA-TTTGTAAAATTATCAAAATACCCTTGGTTTGTAAAATTACCA
76665565 AAATACCCCTAATTTGT
64 AAATACCCCTAATTTGT
* ** ** ** * **
76665582 GAAATTACTGAAATACCCTCGACCTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCT-GATTTGTAAAATTATCAAAATACCCTTGGTTTGTAAAATTACCAA
*
76665647 AGTACCC
65 AATACCC
76665654 TCGATTTATA
Statistics
Matches: 130, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
80 19 0.15
81 109 0.84
82 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTGATTTGTAAAATTATCAAAATACCCTTGGTTTGTAAAATTACCAAA
ATACCCCTAATTTGT
Found at i:76665613 original size:27 final size:27
Alignment explanation
Indices: 76665583--76665657 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
76665573 CTAATTTGTG
76665583 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* *
76665610 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
*
76665637 AAATTAC-CAAAGTACCCTCGA
1 AAATTACTGAAA-TACCCTCGA
76665658 TTTATAGAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.07
27 40 0.93
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.27
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:76665965 original size:27 final size:27
Alignment explanation
Indices: 76665649--76665964 Score: 433
Period size: 27 Copynumber: 11.8 Consensus size: 27
76665639 ATTACCAAAG
*
76665649 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
** *
76665676 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
76665703 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
76665730 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
*
76665757 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
76665784 TACCC-CAATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
76665810 TACCC-CGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
76665836 TACCCTCGATTTACAGAATTACCG-TT
1 TACCCTCGATTTACAGAATTACCGTTT
*
76665862 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
76665889 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
76665916 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
76665943 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
76665965 TAAAATACCC
Statistics
Matches: 260, Mismatches: 25, Indels: 8
0.89 0.09 0.03
Matches are distributed among these distances:
26 73 0.28
27 186 0.72
28 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:76667308 original size:20 final size:20
Alignment explanation
Indices: 76667283--76667345 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
76667273 ATTTTGATAA
76667283 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
76667303 ACATGACATGTGTGATATGC
1 ACATGATATGTATGATATGC
76667323 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
76667343 ACA
1 ACA
76667346 CGAGATGTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:76667455 original size:24 final size:23
Alignment explanation
Indices: 76667399--76667588 Score: 274
Period size: 24 Copynumber: 8.0 Consensus size: 23
76667389 GAGGAAGTGA
76667399 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
76667422 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
76667445 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
76667469 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
76667493 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
76667517 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
76667540 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
76667564 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
76667588 A
1 A
76667589 TGATAAAGCA
Statistics
Matches: 154, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
23 63 0.41
24 81 0.53
25 10 0.06
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:76667468 original size:47 final size:47
Alignment explanation
Indices: 76667399--76667566 Score: 293
Period size: 47 Copynumber: 3.6 Consensus size: 47
76667389 GAGGAAGTGA
76667399 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
76667446 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
*
76667494 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
76667540 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
76667567 AGAGGCTAGG
Statistics
Matches: 115, Mismatches: 5, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
46 25 0.22
47 45 0.39
48 45 0.39
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:76667522 original size:71 final size:70
Alignment explanation
Indices: 76667399--76667587 Score: 274
Period size: 71 Copynumber: 2.7 Consensus size: 70
76667389 GAGGAAGTGA
* *
76667399 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCCA
76667464 GTTAT
66 GTTAT
*
76667469 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT-TAAAGGGCTTATGCCC
1 -AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCC
76667533 CAGTTAT
64 CAGTTAT
* *
76667540 AAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTACGCC-CCAGTTAT
76667588 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
70 31 0.28
71 57 0.52
72 21 0.19
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (70 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTAT
Found at i:76667815 original size:31 final size:31
Alignment explanation
Indices: 76667780--76667843 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
76667770 CGTTTACCGT
*
76667780 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
76667811 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
76667842 AA
1 AA
76667844 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:76669045 original size:27 final size:26
Alignment explanation
Indices: 76669001--76669052 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
76668991 TTCGCTGCAA
*
76669001 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
76669028 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
76669053 GCAACATCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:76673800 original size:27 final size:27
Alignment explanation
Indices: 76673758--76673864 Score: 142
Period size: 27 Copynumber: 4.0 Consensus size: 27
76673748 AATCTCATAT
* *
76673758 CTGTAGGCTAGCATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
76673785 CTGTTGGGTAGAATTATTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
76673812 CTGTAGGGTAGAATTACTGAAATGCCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* **
76673839 CTATAGGGTAGAATTACCAAAATACC
1 CTGTAGGGTAGAATTACTGAAATACC
76673865 ATTGGTTTAC
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.27
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACTGAAATACCC
Found at i:76673878 original size:27 final size:27
Alignment explanation
Indices: 76673850--76674001 Score: 178
Period size: 27 Copynumber: 5.6 Consensus size: 27
76673840 TATAGGGTAG
* ** *
76673850 AATTACCAAAATACCATTGGTTTACAG
1 AATTACCAAAATACCCTTGGTTTGTAA
*
76673877 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
76673904 AATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* *
76673931 AATTACCAAAATACCCTTGATTTGTGA
1 AATTACCAAAATACCCTTGGTTTGTAA
* * * **
76673958 AATTACCGAAATAACCTCGACTTGTAAA
1 AATTACCAAAATACCCTTGGTTTGT-AA
*
76673986 AATTACCAAAGTACCC
1 AATTACCAAAATACCC
76674002 CCGATTTACA
Statistics
Matches: 108, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
27 94 0.87
28 14 0.13
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTGTAA
Found at i:76673879 original size:54 final size:54
Alignment explanation
Indices: 76673821--76673970 Score: 140
Period size: 54 Copynumber: 2.8 Consensus size: 54
76673811 CCTGTAGGGT
** * *
76673821 AGAATTACTGAAATGCCCCT-ATAGGGTAGAATTACCAAAATACCATTGGTTTAC
1 AGAATTACCAAAATACCCCTGAT-GGGTAAAATTACCAAAATACCATTGGTTTAC
* ** * **
76673875 AGAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGT
1 AGAATTACCAAAATACCCCTGATGGGTAAAATTACCAAAATACCATTGGTTTAC
* * ** * *
76673929 AAAATTACCAAAATACCCTTGATTTGTGAAATTACCGAAATA
1 AGAATTACCAAAATACCCCTGATGGGTAAAATTACCAAAATA
76673971 ACCTCGACTT
Statistics
Matches: 80, Mismatches: 15, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
54 79 0.99
55 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (54 bp):
AGAATTACCAAAATACCCCTGATGGGTAAAATTACCAAAATACCATTGGTTTAC
Found at i:76674108 original size:27 final size:27
Alignment explanation
Indices: 76674048--76674119 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 27
76674038 AAAATTATTG
* *
76674048 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAACTACCA
* *
76674075 AAATACCCCTGTAGGGTAGGACTACCG
1 AAATACCCCTGTAGGGTAGAACTACCA
** *
76674102 ATTTACCCCTGAAGGGTA
1 AAATACCCCTGTAGGGTA
76674120 AAATGACTAT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAACTACCA
Found at i:76674840 original size:2 final size:2
Alignment explanation
Indices: 76674833--76674870 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
76674823 GTGGCTTCGC
76674833 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
76674871 TATATATATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:76674941 original size:26 final size:26
Alignment explanation
Indices: 76674890--76674948 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
76674880 ATATATATAT
*
76674890 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGGACTAGCCACA
* *
76674916 ATATCTGTATCTGGT-GACTTGTCACA
1 ATATCTGT-TCTGGTGGACTAGCCACA
76674942 ATATCTG
1 ATATCTG
76674949 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 23 0.79
27 6 0.21
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGGACTAGCCACA
Found at i:76677618 original size:43 final size:43
Alignment explanation
Indices: 76677495--76677629 Score: 134
Period size: 43 Copynumber: 3.1 Consensus size: 43
76677485 TTTGGGATGT
* * * * *
76677495 TGGCATCGAT-TTGTAATTTACGTGTAAGACCATGTCTGGGACAT
1 TGGCATCGATATT-TGA-TTACATGTAAAACCACGTCTGGGACAG
* * *
76677539 TGGCATCG-TATATGATTTCATGTAAAACC-CTATCTGGGACAG
1 TGGCATCGATATTTGATTACATGTAAAACCAC-GTCTGGGACAG
76677581 TGGCATCGATATTTGATTACATGTAAAACCACGTCTGGGAC-G
1 TGGCATCGATATTTGATTACATGTAAAACCACGTCTGGGACAG
76677623 TTGGCAT
1 -TGGCAT
76677630 TGTACGAGCT
Statistics
Matches: 75, Mismatches: 11, Indels: 11
0.77 0.11 0.11
Matches are distributed among these distances:
42 29 0.39
43 36 0.48
44 10 0.13
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (43 bp):
TGGCATCGATATTTGATTACATGTAAAACCACGTCTGGGACAG
Found at i:76684588 original size:86 final size:85
Alignment explanation
Indices: 76684443--76684789 Score: 428
Period size: 86 Copynumber: 4.1 Consensus size: 85
76684433 TATTTAAAAA
* * * * * * *
76684443 AATTAAAATTGAATAAAATATGTTTCAAAATTTATTCCCGTCGTTTAATAAATTTTATTCCATTC
1 AATTAAAATTGAATAAAATTTGTTTCGAGATTTATTCCCGCCGTTCAACAGATTTTATTCCATT-
*
76684508 TTTATTTTGTTTCCAAACGAG
65 TTTATTTTGTTTCCAAACAAG
* *
76684529 AATTAAAATTGAATAAAATTTGTTTCGAGATTTATTCCTGCCATTCAACAGATTTTATTCCATTT
1 AATTAAAATTGAATAAAATTTGTTTCGAGATTTATTCCCGCCGTTCAACAGATTTTATTCCA-TT
* **
76684594 TTTATTTTGTCTCCAAACGGG
65 TTTATTTTGTTTCCAAACAAG
* * * * * *
76684615 ATTTAAAATTGAATAAAATTTGTTTAGGGATTTATTACCTCCGTTCAACATATTTTATTCCATTT
1 AATTAAAATTGAATAAAATTTGTTTCGAGATTTATTCCCGCCGTTCAACAGATTTTATTCCATTT
*
76684680 TGATTTTGTTTCCAAACAAG
66 TTATTTTGTTTCCAAACAAG
* * * *
76684700 AATTAAAATTGAAT--AATTCTGTTTCGGGATTTATTCCCACCGTTCAATAGATTTTATTCAATT
1 AATTAAAATTGAATAAAATT-TGTTTCGAGATTTATTCCCGCCGTTCAACAGATTTTATTCCATT
*
76684763 TTTATTTTGTTTCCAAATAAG
65 TTTATTTTGTTTCCAAACAAG
76684784 AATTAA
1 AATTAA
76684790 TTGAACCGGG
Statistics
Matches: 227, Mismatches: 32, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
83 4 0.02
84 63 0.28
85 32 0.14
86 126 0.56
87 2 0.01
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.44
Consensus pattern (85 bp):
AATTAAAATTGAATAAAATTTGTTTCGAGATTTATTCCCGCCGTTCAACAGATTTTATTCCATTT
TTATTTTGTTTCCAAACAAG
Found at i:76684805 original size:72 final size:72
Alignment explanation
Indices: 76684724--76684863 Score: 183
Period size: 72 Copynumber: 1.9 Consensus size: 72
76684714 AATTCTGTTT
* * * * *
76684724 CGGGATTTATTCCCACCGT-TCAATAGATTTTATTCAATTTTTATTTTGTTTCCAAATAAGAATT
1 CGGGATTTATTCCCACCGTGT-AACAGATTTTATTCAAGTTTGATTTAGTTTCCAAACAAGAATT
76684788 AATTGAAC
65 AATTGAAC
** * *
76684796 CGGGATTTATTCCTGCCGTGTAACAGATTTTATTCGAGTTTGATTTAGTTTCCAAACAAGATTTA
1 CGGGATTTATTCCCACCGTGTAACAGATTTTATTCAAGTTTGATTTAGTTTCCAAACAAGAATTA
76684861 ATT
66 ATT
76684864 AAATCGTTCA
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
72 57 0.98
73 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.42
Consensus pattern (72 bp):
CGGGATTTATTCCCACCGTGTAACAGATTTTATTCAAGTTTGATTTAGTTTCCAAACAAGAATTA
ATTGAAC
Found at i:76689158 original size:27 final size:27
Alignment explanation
Indices: 76689128--76689219 Score: 132
Period size: 27 Copynumber: 3.4 Consensus size: 27
76689118 TAGAATTATT
*
76689128 AAAATACCCCTGGTTTGTAAAATTACC
1 AAAATACCCCTAGTTTGTAAAATTACC
76689155 AAAATACCCCTAGTTTGTAAAATTACC
1 AAAATACCCCTAGTTTGTAAAATTACC
**
76689182 AAAATA-CCCTCAACTTGTAAAATTACC
1 AAAATACCCCT-AGTTTGTAAAATTACC
*
76689209 AAAGTACCCCT
1 AAAATACCCCT
76689220 GATTTACAGA
Statistics
Matches: 59, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
26 4 0.07
27 51 0.86
28 4 0.07
ACGTcount: A:0.40, C:0.25, G:0.08, T:0.27
Consensus pattern (27 bp):
AAAATACCCCTAGTTTGTAAAATTACC
Found at i:76689270 original size:27 final size:26
Alignment explanation
Indices: 76689128--76689272 Score: 101
Period size: 27 Copynumber: 5.4 Consensus size: 26
76689118 TAGAATTATT
* *
76689128 AAAATACCCCTGGTTTGTAAAATTACC
1 AAAATACCCC-GATTTATAAAATTACC
* *
76689155 AAAATACCCCTAGTTTGTAAAATTACC
1 AAAATACCCCGA-TTTATAAAATTACC
* * *
76689182 AAAATACCCTCAACTTGTAAAATTACC
1 AAAATACCC-CGATTTATAAAATTACC
* * * *
76689209 AAAGTACCCCTGATTTACAGAATTATC
1 AAAATACCCC-GATTTATAAAATTACC
*** * *
76689236 ATTTTACCCTCGATTTAAAAAATTATC
1 AAAATACCC-CGATTTATAAAATTACC
76689263 AAAATACCCC
1 AAAATACCCC
76689273 TGTAGGGTAG
Statistics
Matches: 95, Mismatches: 19, Indels: 9
0.77 0.15 0.07
Matches are distributed among these distances:
26 2 0.02
27 90 0.95
28 3 0.03
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (26 bp):
AAAATACCCCGATTTATAAAATTACC
Found at i:76689981 original size:27 final size:26
Alignment explanation
Indices: 76689937--76689988 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
76689927 CTCGCTGCAA
*
76689937 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
76689964 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
76689989 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:76696710 original size:27 final size:27
Alignment explanation
Indices: 76696672--76696776 Score: 140
Period size: 27 Copynumber: 3.9 Consensus size: 27
76696662 AGTGGATAAG
* *
76696672 TTGTAGAATTACTAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
*
76696699 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTGGT
**
76696726 TTGTAAAATTACCAAAATA-CCCTCGAC
1 TTGTAAAATTACCAAAATACCCCT-GGT
*
76696753 TTGTAAAATTACCAAAGTACCCCT
1 TTGTAAAATTACCAAAATACCCCT
76696777 AATTTACAGA
Statistics
Matches: 69, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
26 4 0.06
27 61 0.88
28 4 0.06
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTGGT
Found at i:76696757 original size:54 final size:54
Alignment explanation
Indices: 76696672--76696831 Score: 187
Period size: 54 Copynumber: 3.0 Consensus size: 54
76696662 AGTGGATAAG
* * *
76696672 TTGTAGAATTACTAAAATACCC-CTGGTTTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAGAATTACCAAAATACCCTC-GATTTGTAAAATTACCAAAATACCCCTAAT
* * *
76696726 TTGTAAAATTACCAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTAAT
1 TTGTAGAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTAAT
** *** **
76696780 TTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCAAAATACCCCTA
1 TTGTAGAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTA
76696832 TGGGGTAGGA
Statistics
Matches: 89, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
54 88 0.99
55 1 0.01
ACGTcount: A:0.39, C:0.24, G:0.07, T:0.30
Consensus pattern (54 bp):
TTGTAGAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTAAT
Found at i:76696789 original size:27 final size:27
Alignment explanation
Indices: 76696678--76696831 Score: 116
Period size: 27 Copynumber: 5.7 Consensus size: 27
76696668 TAAGTTGTAG
* ** **
76696678 AATTACTAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTAATTTACAA
* **
76696705 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAATTTACAA
* *
76696732 AATTACCAAAATACCCTCGACTTGT--AA
1 AATTACCAAAATACCC-CTAATT-TACAA
* *
76696759 AATTACCAAAGTACCCCTAATTTACAG
1 AATTACCAAAATACCCCTAATTTACAA
*** *
76696786 AATTACCATTTTA-CCCTCGATTTACAA
1 AATTACCAAAATACCCCT-AATTTACAA
76696813 AATTACCAAAATACCCCTA
1 AATTACCAAAATACCCCTA
76696832 TGGGGTAGGA
Statistics
Matches: 104, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
25 1 0.01
26 8 0.08
27 86 0.83
28 8 0.08
29 1 0.01
ACGTcount: A:0.40, C:0.25, G:0.06, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTACAA
Found at i:76697605 original size:26 final size:27
Alignment explanation
Indices: 76697576--76697635 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
76697566 CCACATATAT
*
76697576 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
76697602 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
76697629 ATATCTG
1 ATATCTG
76697636 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:76705047 original size:17 final size:17
Alignment explanation
Indices: 76705025--76705069 Score: 81
Period size: 17 Copynumber: 2.6 Consensus size: 17
76705015 AAAATTGGGT
76705025 TCTAATAGCTAAAGGCG
1 TCTAATAGCTAAAGGCG
*
76705042 TCTAATAGCTAAAGGTG
1 TCTAATAGCTAAAGGCG
76705059 TCTAATAGCTA
1 TCTAATAGCTA
76705070 TATAAATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.29
Consensus pattern (17 bp):
TCTAATAGCTAAAGGCG
Found at i:76707486 original size:40 final size:40
Alignment explanation
Indices: 76707401--76707551 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
76707391 AATTGAATGA
* * *
76707401 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
76707441 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
76707482 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
76707521 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
76707552 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:76707565 original size:40 final size:40
Alignment explanation
Indices: 76707438--76707567 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
76707428 ATGCTGGAAA
* * * *
76707438 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
76707478 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
76707518 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
76707558 TTATATCCGG
1 TTATATCCGG
76707568 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:76714589 original size:17 final size:17
Alignment explanation
Indices: 76714569--76714602 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
76714559 CATTCTTGAG
76714569 CATGATTCATGCATGTT
1 CATGATTCATGCATGTT
* *
76714586 CATGCTTCTTGCATGTT
1 CATGATTCATGCATGTT
76714603 AGTTAAAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.21, G:0.18, T:0.44
Consensus pattern (17 bp):
CATGATTCATGCATGTT
Found at i:76715496 original size:40 final size:40
Alignment explanation
Indices: 76715411--76715561 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
76715401 AATTGAATGA
* * *
76715411 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
76715451 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
76715492 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
76715531 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
76715562 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:76715575 original size:40 final size:40
Alignment explanation
Indices: 76715448--76715577 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
76715438 ATGCTGGAAA
* * * *
76715448 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
76715488 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
76715528 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
76715568 TTATATCCGG
1 TTATATCCGG
76715578 TTATGTTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:76728936 original size:55 final size:53
Alignment explanation
Indices: 76728822--76729010 Score: 227
Period size: 55 Copynumber: 3.5 Consensus size: 53
76728812 AACTTACCAT
* * * *
76728822 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCCTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCAACAA
* * *
76728875 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCAACAA
* * * *
76728930 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTAACAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCAACAA
*
76728984 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
76729011 ATATCCTTAT
Statistics
Matches: 117, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
52 2 0.02
53 34 0.29
54 34 0.29
55 45 0.38
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCAACAA
Found at i:76729052 original size:47 final size:47
Alignment explanation
Indices: 76728997--76729118 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
76728987 CATGCCTTGG
* *
76728997 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGATCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGATCCAAA
* *
76729044 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGATCCAAA
76729091 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
76729119 GTGCCAATGC
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGATCCAAA
Found at i:76735612 original size:20 final size:20
Alignment explanation
Indices: 76735587--76735637 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
76735577 GTTATGCCTC
76735587 ACACGCCCGTGTGCTTGGGG
1 ACACGCCCGTGTGCTTGGGG
76735607 ACACGCCCGTGTGCTTGGGG
1 ACACGCCCGTGTGCTTGGGG
76735627 ACACGCCCGTG
1 ACACGCCCGTG
76735638 CCCCTCACCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.12, C:0.33, G:0.37, T:0.18
Consensus pattern (20 bp):
ACACGCCCGTGTGCTTGGGG
Found at i:76736857 original size:78 final size:78
Alignment explanation
Indices: 76736728--76736884 Score: 305
Period size: 78 Copynumber: 2.0 Consensus size: 78
76736718 TTTTAGACTA
*
76736728 AAATGGTAATTTTGTCATTTTTGTATTCGAGGTAAGTTCGCGTGATTGAATAAGCATATTATTCA
1 AAATGGTAATTTTGTCATTTTCGTATTCGAGGTAAGTTCGCGTGATTGAATAAGCATATTATTCA
76736793 TGTTATTATTGTT
66 TGTTATTATTGTT
76736806 AAATGGTAATTTTGTCATTTTCGTATTCGAGGTAAGTTCGCGTGATTGAATAAGCATATTATTCA
1 AAATGGTAATTTTGTCATTTTCGTATTCGAGGTAAGTTCGCGTGATTGAATAAGCATATTATTCA
76736871 TGTTATTATTGTT
66 TGTTATTATTGTT
76736884 A
1 A
76736885 TACATGAAAT
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 78 1.00
ACGTcount: A:0.27, C:0.08, G:0.19, T:0.45
Consensus pattern (78 bp):
AAATGGTAATTTTGTCATTTTCGTATTCGAGGTAAGTTCGCGTGATTGAATAAGCATATTATTCA
TGTTATTATTGTT
Found at i:76736952 original size:17 final size:17
Alignment explanation
Indices: 76736913--76736955 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
76736903 CTATGATTGT
**
76736913 ATTGA-ATTTGATGTTA
1 ATTGACATTTGATGGAA
*
76736929 ATGGACATTTGATGGAA
1 ATTGACATTTGATGGAA
76736946 ATTGACATTT
1 ATTGACATTT
76736956 TAAATGAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.42
Consensus pattern (17 bp):
ATTGACATTTGATGGAA
Found at i:76743533 original size:28 final size:28
Alignment explanation
Indices: 76743500--76743567 Score: 104
Period size: 27 Copynumber: 2.5 Consensus size: 28
76743490 GCGTAGATCA
76743500 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
76743528 TGAAATTA-CCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
76743555 CGATA-TACCCCTA
1 CGAAATTACCCCTA
76743568 GGTTTTAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
26 2 0.06
27 27 0.75
28 7 0.19
ACGTcount: A:0.44, C:0.25, G:0.10, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:76747039 original size:28 final size:28
Alignment explanation
Indices: 76747006--76747074 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
76746996 GCGTAGATCA
76747006 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
76747034 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
76747062 CGATA-TACCCCTA
1 CGAAATTACCCCTA
76747075 GAGTTTTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 8 0.21
28 30 0.79
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:76752574 original size:22 final size:22
Alignment explanation
Indices: 76752547--76752603 Score: 96
Period size: 22 Copynumber: 2.6 Consensus size: 22
76752537 GTGTTGAAGA
76752547 CACACGGGCATGTCCCTGTGTC
1 CACACGGGCATGTCCCTGTGTC
* *
76752569 CTCACGGGCGTGTCCCTGTGTC
1 CACACGGGCATGTCCCTGTGTC
76752591 CACACGGGCATGT
1 CACACGGGCATGT
76752604 GGCTCCGCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.12, C:0.35, G:0.30, T:0.23
Consensus pattern (22 bp):
CACACGGGCATGTCCCTGTGTC
Found at i:76760013 original size:56 final size:56
Alignment explanation
Indices: 76759927--76760041 Score: 158
Period size: 56 Copynumber: 2.1 Consensus size: 56
76759917 ACCATACAAA
* *
76759927 TTCCCTTTCGTACTCTGGCACAGTCCTATTTCCTTGTTTGAGTTCCAGGAACTCCT
1 TTCCCTTTCGTACTCTGACACAGTACTATTTCCTTGTTTGAGTTCCAGGAACTCCT
* * * * * *
76759983 TTCCCTTTCGTCCTCTTACACAGTATTATTTCTTTTTTTGAGTTCCAGGAACTCTT
1 TTCCCTTTCGTACTCTGACACAGTACTATTTCCTTGTTTGAGTTCCAGGAACTCCT
76760039 TTC
1 TTC
76760042 GCTTCGATTC
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 51 1.00
ACGTcount: A:0.15, C:0.28, G:0.13, T:0.44
Consensus pattern (56 bp):
TTCCCTTTCGTACTCTGACACAGTACTATTTCCTTGTTTGAGTTCCAGGAACTCCT
Found at i:76762286 original size:21 final size:20
Alignment explanation
Indices: 76762244--76762286 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
76762234 TCACCTCGAG
*
76762244 TATCGATACTCAAGATAAAA
1 TATCGATACTCAAGACAAAA
76762264 TATCGATACCTACAAG-CAAAA
1 TATCGATA-CT-CAAGACAAAA
76762285 TA
1 TA
76762287 GACTGTTTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 8 0.40
21 8 0.40
22 4 0.20
ACGTcount: A:0.49, C:0.19, G:0.09, T:0.23
Consensus pattern (20 bp):
TATCGATACTCAAGACAAAA
Found at i:76772170 original size:5 final size:5
Alignment explanation
Indices: 76772162--76772187 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
76772152 AAATCGAATC
76772162 AATTA AATTA AATTA AATTA AATTA A
1 AATTA AATTA AATTA AATTA AATTA A
76772188 TTACAAACAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
AATTA
Found at i:76772205 original size:20 final size:20
Alignment explanation
Indices: 76772182--76772219 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
76772172 AATTAAATTA
76772182 AATTA-ATTACAAACAGATCC
1 AATTATATTA-AAACAGATCC
76772202 AATTATATTAAAACAGAT
1 AATTATATTAAAACAGAT
76772220 TGAGAGAGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.53, C:0.13, G:0.05, T:0.29
Consensus pattern (20 bp):
AATTATATTAAAACAGATCC
Found at i:76774261 original size:16 final size:17
Alignment explanation
Indices: 76774237--76774270 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
76774227 TAAAATTTTA
76774237 AAATAATAAAATAATAT
1 AAATAATAAAATAATAT
*
76774254 AAAT-ATAATATAATAT
1 AAATAATAAAATAATAT
76774270 A
1 A
76774271 TTATAATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
AAATAATAAAATAATAT
Found at i:76775869 original size:588 final size:589
Alignment explanation
Indices: 76774687--76775857 Score: 1649
Period size: 593 Copynumber: 2.0 Consensus size: 589
76774677 AGGTTTTGAG
76774687 TACTTAAATTTGTTTTAAGTTTTAAAGTACTTATTTATTTATTTTAAATTTTATTTTTATCTCAA
1 TACTTAAATTTGTTTTAAGTTTTAAAG-AC-TATTTATTTATTTTAAATTTTATTTTTATCTCAA
*
76774752 AACCCAATCATTCCACATTATTTTTCCCACTTTAGTTCTCTGTGACTTTTCTGTAATCCCTTCTT
64 AACCCAATCATTCCACATTATTTTTCCCACTTTAGTTCTCTGTGACTTTTCTATAATCCCTTCTT
* * *
76774817 CCTTATTTCTTTCCCAAAATTCAGTTTTCTTGTAATTTCTTACTTTTTCGGTTTTATCGTTACTT
129 CCTTATTTCTTCCCCAAAATTCAATTTTCTTGTAATTTCTTACTTCTTCGGTTTTATCGTTACTT
* * **
76774882 GTCGTCTATCAAGAGAGTTTTGTCCTCGTGTGTTCTTTTAATCAGAGGTCAAGAAGGTTTTGAAC
194 GTCGCCTATCAAGAGAGTTTTGTCCTCG-GTG----TTTAATCAGAGGTCAAGAAGGATCCGAAC
* * *
76774947 GGTTTGGTGAGGCAAATCAAACGGTTCGTGGTGCTGGGAATCACGATTTAATGTGTGTGTTTTGA
254 GATTTGGTGAGG-AAATCAAACGGTTCGTGGTACTGGGAATCACGATTTAATGTGTGTGTTCTGA
**
76775012 ACCTGTTTAAATTTGCTATTTAATCATTGTCAGATTCTATGGAATACGACGATCTCTTGAGTGTT
318 ACCTGTTTAAATTTGCTATCGAATCATTGTCAGATTCTATGGAATACGACGATCTCTTGAGTGTT
*
76775077 TCTGAAATTAAAGTGAGTAGGGATCGTTTTGATGGTGGATTTCTTGATTTCCATTTGATTTTAGT
383 TCTGAAATTAAAGTGAGTAGGGATCGTTTTGATGGTGGATTTCTTGATTTCCATTTGATTTCAGT
* * * * * * * * * *
76775142 GTGGGTTTTGGCACTATTGATGTCGGTATTCTTTTCGTTAAAGAAGTTTACGTTTTGGGGTTATT
448 GTGGGTTTTAGCACTACTAATGTCGATATTCATTTCGTTAAAGAAATTCACATTTTGAGGCTATT
* *
76775207 TTAGGGTGGTTTCGTGACCACACGGATGTCCACACAGCCATGTTCAATTGGGAATTAGGGTTTTA
513 TTAGGGTGGTTTCGTGACCACACGGATGGCCACACAGCCATGTTCAATTGAGAATTAGGGTTTTA
76775272 AGGAATTTTTTT
578 AGGAATTTTTTT
*
76775284 TACTTAAATTTGTTTTAAGTTTTAAA-A-TATTTATTTATTTT-AATTTTAATTTTTATTTCAAA
1 TACTTAAATTTGTTTTAAGTTTTAAAGACTATTTATTTATTTTAAATTTT-ATTTTTATCTCAAA
* * **
76775346 ACCCAA-CAATTCCACTTTCTTTTTCCCACTTTAGTTCTCTGTGACTTTTCTATAATTTCTTCTT
65 ACCCAATC-ATTCCACATTATTTTTCCCACTTTAGTTCTCTGTGACTTTTCTATAATCCCTTCTT
* * * *
76775410 TCTTCTTTCTTCCCCAAAATTCAATTTTCTTGTAATTTCTTGCTTCTTCGGTTTTATTGTTACTT
129 CCTTATTTCTTCCCCAAAATTCAATTTTCTTGTAATTTCTTACTTCTTCGGTTTTATCGTTACTT
* * *
76775475 GTCGCCTGTCAAGGGAGTTTTGTCCTC-GTG-TTAATCAGAGGTGAAGAAGGATCCGAACGATTT
194 GTCGCCTATCAAGAGAGTTTTGTCCTCGGTGTTTAATCAGAGGTCAAGAAGGATCCGAACGATTT
** * *
76775538 GGTAGAGTG-AATTGAATGGTTCGTGGTACTGGGAATCGCGATTTAAGGTGTGTGTGTTCTGAAC
259 GGT-GAG-GAAATCAAACGGTTCGTGGTACTGGGAATCACGATTTAA--TGTGTGTGTTCTGAAC
* * *
76775602 TTGTTTAAATTTGCTATCGAATCATTGTTAGATTCTATGGAATACGACGATCTGTTGAGTGTTTC
320 CTGTTTAAATTTGCTATCGAATCATTGTCAGATTCTATGGAATACGACGATCTCTTGAGTGTTTC
* * *
76775667 TGAAATTAAGGTGAGTAGAGG-TTGTTTTGATGGTGGATTTCTTGATTTCCATTTGATTTCGGTG
385 TGAAATTAAAGTGAGTAG-GGATCGTTTTGATGGTGGATTTCTTGATTTCCATTTGATTTCAGTG
* * *
76775731 TGGGTTTTAGCAC-ACTAATGTTGATATTCATTTCGTTGAAGAAATTCACATTTTTAGGCTATTT
449 TGGGTTTTAGCACTACTAATGTCGATATTCATTTCGTTAAAGAAATTCACATTTTGAGGCTATTT
* * * *
76775795 TAGGGTGGTTTCGTGACCACACGGGTGGCCACACGGTCGTGTTCAATTGAGAATTAGGGTTTT
514 TAGGGTGGTTTCGTGACCACACGGATGGCCACACAGCCATGTTCAATTGAGAATTAGGGTTTT
76775858 TGGGCAATTT
Statistics
Matches: 512, Mismatches: 55, Indels: 24
0.87 0.09 0.04
Matches are distributed among these distances:
586 63 0.12
587 99 0.19
588 145 0.28
589 2 0.00
591 3 0.01
592 7 0.01
593 166 0.32
595 1 0.00
597 26 0.05
ACGTcount: A:0.23, C:0.14, G:0.20, T:0.43
Consensus pattern (589 bp):
TACTTAAATTTGTTTTAAGTTTTAAAGACTATTTATTTATTTTAAATTTTATTTTTATCTCAAAA
CCCAATCATTCCACATTATTTTTCCCACTTTAGTTCTCTGTGACTTTTCTATAATCCCTTCTTCC
TTATTTCTTCCCCAAAATTCAATTTTCTTGTAATTTCTTACTTCTTCGGTTTTATCGTTACTTGT
CGCCTATCAAGAGAGTTTTGTCCTCGGTGTTTAATCAGAGGTCAAGAAGGATCCGAACGATTTGG
TGAGGAAATCAAACGGTTCGTGGTACTGGGAATCACGATTTAATGTGTGTGTTCTGAACCTGTTT
AAATTTGCTATCGAATCATTGTCAGATTCTATGGAATACGACGATCTCTTGAGTGTTTCTGAAAT
TAAAGTGAGTAGGGATCGTTTTGATGGTGGATTTCTTGATTTCCATTTGATTTCAGTGTGGGTTT
TAGCACTACTAATGTCGATATTCATTTCGTTAAAGAAATTCACATTTTGAGGCTATTTTAGGGTG
GTTTCGTGACCACACGGATGGCCACACAGCCATGTTCAATTGAGAATTAGGGTTTTAAGGAATTT
TTTT
Found at i:76778729 original size:16 final size:18
Alignment explanation
Indices: 76778700--76778732 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
76778690 TTTTTTTAGG
76778700 TTTTAAAATATTTATTTA
1 TTTTAAAATATTTATTTA
76778718 TTTT-AAAT-TTTATTT
1 TTTTAAAATATTTATTT
76778733 TTATTTCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTAAAATATTTATTTA
Found at i:76778735 original size:18 final size:18
Alignment explanation
Indices: 76778683--76778738 Score: 55
Period size: 18 Copynumber: 3.1 Consensus size: 18
76778673 TATTTTTTAC
76778683 TTAAATTTT-TTTTTAGGTT
1 TTAAATTTTATTTTTA--TT
76778702 TTAAAATATTTA--TTTATT
1 TT-AAAT-TTTATTTTTATT
76778720 TTAAATTTTATTTTTATT
1 TTAAATTTTATTTTTATT
76778738 T
1 T
76778739 CAAAACCCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
16 4 0.12
17 4 0.12
18 11 0.34
19 2 0.06
20 8 0.25
21 3 0.09
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.68
Consensus pattern (18 bp):
TTAAATTTTATTTTTATT
Found at i:76782613 original size:31 final size:30
Alignment explanation
Indices: 76782576--76782636 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 30
76782566 ACTTAACAAG
76782576 CAAATG-CTTCTAAAATAATAATAAAAATTAA
1 CAAATGCCTT-TAAAATAATAA-AAAAATTAA
76782607 CAAATGCCTTTAAAATAATAAAAAAATTAA
1 CAAATGCCTTTAAAATAATAAAAAAATTAA
76782637 TAAAATAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
30 9 0.31
31 17 0.59
32 3 0.10
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.28
Consensus pattern (30 bp):
CAAATGCCTTTAAAATAATAAAAAAATTAA
Found at i:76803790 original size:17 final size:18
Alignment explanation
Indices: 76803758--76803791 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76803748 TGCAAAAGCG
*
76803758 ACAAACACGGCAGCAAAT
1 ACAAACACGACAGCAAAT
76803776 ACAAACAC-ACAGCAAA
1 ACAAACACGACAGCAAA
76803792 ACAGACAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.29, G:0.12, T:0.03
Consensus pattern (18 bp):
ACAAACACGACAGCAAAT
Found at i:76806371 original size:131 final size:132
Alignment explanation
Indices: 76806132--76806410 Score: 344
Period size: 131 Copynumber: 2.1 Consensus size: 132
76806122 TAGGAATTCT
** * * * * * * *
76806132 TTAAAACGAAGGTGATATTCGATACTTGGTAATTCGTGGAATCGTGCCTTAACGTATTGGGTTGC
1 TTAAAACGAAGGCAATGTGCGATACTTGGCAATTCGCGGAATAGTGCCCTAACGTACTGGGTTGC
* * * * * * * *
76806197 AATTTATCGTTTGCTCAAAGTAATCGAAGGTCCCTTTAGAATTTCACCCATGTCTTTTAAAAATC
66 AATTTATCGTCTGCTCAAAATAATCAAAGATCCCTTCAAAATTTCACCCATATCTTCTAAAAATC
76806262 CC
131 CC
*
76806264 TT-AAACGAAGGCAATGTGCGATATTTGGCAATTCGCGGAATAGTGCCCTAACGTACTGGGTTGC
1 TTAAAACGAAGGCAATGTGCGATACTTGGCAATTCGCGGAATAGTGCCCTAACGTACTGGGTTGC
* * * *
76806328 AATTTCTCGTCTGCTTAAAATAATCAAATATCCCTTCAAAATTTCACTCATATCTTCTAAAAATC
66 AATTTATCGTCTGCTCAAAATAATCAAAGATCCCTTCAAAATTTCACCCATATCTTCTAAAAATC
*
76806393 CT
131 CC
76806395 TTAAAACGAAGGCAAT
1 TTAAAACGAAGGCAAT
76806411 ACTCGGTGTT
Statistics
Matches: 123, Mismatches: 23, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
131 108 0.88
132 15 0.12
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (132 bp):
TTAAAACGAAGGCAATGTGCGATACTTGGCAATTCGCGGAATAGTGCCCTAACGTACTGGGTTGC
AATTTATCGTCTGCTCAAAATAATCAAAGATCCCTTCAAAATTTCACCCATATCTTCTAAAAATC
CC
Found at i:76806435 original size:131 final size:131
Alignment explanation
Indices: 76806162--76806468 Score: 332
Period size: 131 Copynumber: 2.3 Consensus size: 131
76806152 GATACTTGGT
* * * * * * * * *
76806162 AATTCGTGGAATCGTGCCTTAACGTATTGGGTTGCAATTTATCGTTTGCTCAAAGTAATCGAAGG
1 AATTCGCGGAATAGTGCCCTAACGTACTGGGTTGCAATTTCTCGTCTGCTCAAAATAATCAAAGA
* * * * * **
76806227 TCCCTTTAGAATTTCACCCATGTCTTTTAAAAATCCCTTAAACGAAGGCAATGTGCGATATTTGG
66 TCCCTTCAAAATTTCACCCATATCTTCTAAAAATCCCTTAAACGAAGGCAATCTGCGATATTTAA
76806292 C
131 C
* *
76806293 AATTCGCGGAATAGTGCCCTAACGTACTGGGTTGCAATTTCTCGTCTGCTTAAAATAATCAAATA
1 AATTCGCGGAATAGTGCCCTAACGTACTGGGTTGCAATTTCTCGTCTGCTCAAAATAATCAAAGA
* * * *
76806358 TCCCTTCAAAATTTCACTCATATCTTCTAAAAATCCTTTAAAACGAAGGCAATACT-CGGTGTTT
66 TCCCTTCAAAATTTCACCCATATCTTCTAAAAATCCCTT-AAACGAAGGCAAT-CTGCGATATTT
76806422 AAC
129 AAC
* * **
76806425 AATTCG-GGAATCA-TGCCCTATCGTGCTGGGTTGTGATTTCTCGT
1 AATTCGCGGAAT-AGTGCCCTAACGTACTGGGTTGCAATTTCTCGT
76806469 TTATTCAAAA
Statistics
Matches: 147, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
131 119 0.81
132 27 0.18
133 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (131 bp):
AATTCGCGGAATAGTGCCCTAACGTACTGGGTTGCAATTTCTCGTCTGCTCAAAATAATCAAAGA
TCCCTTCAAAATTTCACCCATATCTTCTAAAAATCCCTTAAACGAAGGCAATCTGCGATATTTAA
C
Found at i:76806489 original size:131 final size:130
Alignment explanation
Indices: 76806227--76806649 Score: 361
Period size: 131 Copynumber: 3.2 Consensus size: 130
76806217 TAATCGAAGG
* * * * * * *
76806227 TCCCTTTAGAATTTCACCCATGTCTTTTAAAAATCCCTT-AAACGAAGGCAATGTGCGATATTTG
1 TCCCTTCAGAATTTCACTCATATCTTCTAAAAATCCTTTAAAACGAAGGCAATCT-CGATGTTTG
* * * ** *
76806291 GCAATTCGCGGAAT-AGTGCCCTAACGTACTGGGTTGCAATTTCTCGTCTGCTT-AAAATAATCA
65 GCAATTCG-GGAATCA-TGCCCTATCGTGCTGGGTTGCGATTTCTCGT-TTATTCAAAACAATCA
76806354 AATA
127 AATA
* * *
76806358 TCCCTTCAAAATTTCACTCATATCTTCTAAAAATCCTTTAAAACGAAGGCAATACTCGGTGTTTA
1 TCCCTTCAGAATTTCACTCATATCTTCTAAAAATCCTTTAAAACGAAGGCAAT-CTCGATGTTTG
* * *
76806423 ACAATTCGGGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTATTCAAAACAATCGAAT
65 GCAATTCGGGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTATTCAAAACAATCAAAT
76806488 A
130 A
* * ** * * * * * *
76806489 TTCCTTTAGGTTTTCACTCATGT-TTATTAAAAA-CCTTTCAAAACGAAGACGATGTTTGATGTT
1 TCCCTTCAGAATTTCACTCATATCTT-CTAAAAATCCTTT-AAAACGAAGGCAAT-CTCGATGTT
* * * * * * * **
76806552 TGGCGATTTGAGAATCGTGCCCTATCGTGCTGGGTTGCGCTTTTTCATTTGCTCAAAACAATCAA
63 TGGCAATTCGGGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTATTCAAAACAATCAA
*
76806617 ACA
128 ATA
* * *
76806620 TCCCTTCGGAATTTCACTCGTATTTTCTAA
1 TCCCTTCAGAATTTCACTCATATCTTCTAA
76806650 GGCGAGGCAA
Statistics
Matches: 231, Mismatches: 54, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
130 10 0.04
131 191 0.83
132 29 0.13
133 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (130 bp):
TCCCTTCAGAATTTCACTCATATCTTCTAAAAATCCTTTAAAACGAAGGCAATCTCGATGTTTGG
CAATTCGGGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTATTCAAAACAATCAAATA
Found at i:76809717 original size:16 final size:16
Alignment explanation
Indices: 76809696--76809727 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
76809686 AACCAAACCA
76809696 TGAATATCCACTAACT
1 TGAATATCCACTAACT
76809712 TGAATATCCACTAACT
1 TGAATATCCACTAACT
76809728 ATATAAATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (16 bp):
TGAATATCCACTAACT
Found at i:76811523 original size:2 final size:2
Alignment explanation
Indices: 76811518--76811542 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
76811508 ATAAAAATCA
76811518 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
76811543 GAAAGAGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:76811866 original size:2 final size:2
Alignment explanation
Indices: 76811859--76811884 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
76811849 TAAGCAAACA
76811859 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
76811885 TTCCATTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76812747 original size:24 final size:23
Alignment explanation
Indices: 76812702--76812754 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 23
76812692 TTATTAATAA
76812702 TAAATA-TTATTGAAAATATTAT
1 TAAATATTTATTGAAAATATTAT
76812724 TAAATATTTAATTG-AAATACTTAT
1 TAAATATTT-ATTGAAAATA-TTAT
76812748 TAAATAT
1 TAAATAT
76812755 AAAAAAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
22 6 0.21
23 7 0.25
24 15 0.54
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (23 bp):
TAAATATTTATTGAAAATATTAT
Found at i:76815435 original size:13 final size:14
Alignment explanation
Indices: 76815417--76815445 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
76815407 CTAAAAATTT
76815417 AAAAAT-ATTTTTA
1 AAAAATCATTTTTA
76815430 AAAAATCATTTTTA
1 AAAAATCATTTTTA
76815444 AA
1 AA
76815446 CTTGTATAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (14 bp):
AAAAATCATTTTTA
Found at i:76819959 original size:47 final size:47
Alignment explanation
Indices: 76819905--76820145 Score: 347
Period size: 47 Copynumber: 5.1 Consensus size: 47
76819895 TTAGGATTTT
** * * *
76819905 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
76819952 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
76819999 ATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
76820046 ATGTGATGAATGTGAGCTTGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
76820093 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
76820140 ATGTGA
1 ATGTGA
76820146 AATATGTATG
Statistics
Matches: 173, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 173 1.00
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:76819980 original size:25 final size:25
Alignment explanation
Indices: 76819952--76820030 Score: 78
Period size: 25 Copynumber: 3.3 Consensus size: 25
76819942 TGAATGGCCA
76819952 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
76819977 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
76819999 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
76820024 ATGTGAT
1 ATGTGAT
76820031 AAAGCCGAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 8 0.20
23 9 0.22
24 9 0.22
25 15 0.37
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:76820213 original size:141 final size:139
Alignment explanation
Indices: 76819934--76820198 Score: 338
Period size: 141 Copynumber: 1.9 Consensus size: 139
76819924 GTATATATGA
* * *
76819934 GATAAGGCTGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAAGCCGAATGGCCA
* * *
76819999 ATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGACCAATGTGATGAATGTGAGCT
66 ATGTGATAAATGTGAACATG-ATATATGTGATAAAGCCGAATGACCAATGTGA-GAATATGAGAT
76820064 TGCATATGTGT
129 TGCATATGTGT
* * *
76820075 GATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 GATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAAGCCGAATGGCCA
* * **
76820140 ATGTGA-AATATGTATGAGATATG-TATATGTGGTAAAGCCGAATGGTCAATGTGA-AATAT
66 ATGTGATAA-ATG--TGA-ACATGATATATGTGATAAAGCCGAATGACCAATGTGAGAATAT
76820199 ATATATGAGA
Statistics
Matches: 108, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
140 5 0.05
141 68 0.63
142 28 0.26
143 3 0.03
144 4 0.04
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (139 bp):
GATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAAGCCGAATGGCCA
ATGTGATAAATGTGAACATGATATATGTGATAAAGCCGAATGACCAATGTGAGAATATGAGATTG
CATATGTGT
Found at i:76820267 original size:50 final size:48
Alignment explanation
Indices: 76820115--76820251 Score: 222
Period size: 50 Copynumber: 2.8 Consensus size: 48
76820105 TGAACATGCA
76820115 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
76820163 TATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
76820213 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
76820252 GGCGATGTGC
Statistics
Matches: 82, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
47 1 0.01
48 34 0.41
49 4 0.05
50 42 0.51
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:76820448 original size:37 final size:37
Alignment explanation
Indices: 76820398--76820505 Score: 198
Period size: 37 Copynumber: 2.9 Consensus size: 37
76820388 AGAAATATAT
76820398 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
76820435 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
76820472 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
76820506 TCGTCTGAGC
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:76824029 original size:18 final size:18
Alignment explanation
Indices: 76824006--76824041 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
76823996 TAACATATAA
76824006 AAGTATATAATACATACC
1 AAGTATATAATACATACC
76824024 AAGTATATAATACATACC
1 AAGTATATAATACATACC
76824042 TGACCAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.28
Consensus pattern (18 bp):
AAGTATATAATACATACC
Found at i:76824243 original size:39 final size:39
Alignment explanation
Indices: 76824166--76824368 Score: 293
Period size: 39 Copynumber: 5.2 Consensus size: 39
76824156 TCACCACCAG
* *
76824166 AAAGCATGCGGGACTTTAAGCCTGGATATAATACCAGCAT
1 AAAGCCTGCGGGACTTT-AGCCCGGATATAATACCAGCAT
76824206 AAAGCCTGCGGGACTTTAGCCCGGATATAATACCAGCAT
1 AAAGCCTGCGGGACTTTAGCCCGGATATAATACCAGCAT
* *
76824245 AAAGCCTGCGGGACTTTAGCCCGGATATAACACCAGCAC
1 AAAGCCTGCGGGACTTTAGCCCGGATATAATACCAGCAT
* * *
76824284 AAATGCCTTCGGGAC-TTAGCCCGGATATAACACCAGCAC
1 AAA-GCCTGCGGGACTTTAGCCCGGATATAATACCAGCAT
*
76824323 AAATGCCTTCGGGAC-TTAGCCCGGATATAATACCAGCAT
1 AAA-GCCTGCGGGACTTTAGCCCGGATATAATACCAGCAT
76824362 AAAGCCT
1 AAAGCCT
76824369 ACGGACCTCA
Statistics
Matches: 155, Mismatches: 7, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
38 4 0.03
39 125 0.81
40 26 0.17
ACGTcount: A:0.32, C:0.27, G:0.22, T:0.20
Consensus pattern (39 bp):
AAAGCCTGCGGGACTTTAGCCCGGATATAATACCAGCAT
Found at i:76836048 original size:12 final size:12
Alignment explanation
Indices: 76836031--76836065 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
76836021 GGTTTCGTGA
76836031 CCATATAGGTGG
1 CCATATAGGTGG
76836043 CCATATAGGTGG
1 CCATATAGGTGG
76836055 CCATATAGGTG
1 CCATATAGGTG
76836066 TGTGCTAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (12 bp):
CCATATAGGTGG
Found at i:76836321 original size:20 final size:20
Alignment explanation
Indices: 76836296--76836333 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
76836286 TGTTCTTAGG
* *
76836296 TCACACGGGCGTGTGCCTCC
1 TCACACGAGCATGTGCCTCC
76836316 TCACACGAGCATGTGCCT
1 TCACACGAGCATGTGCCT
76836334 TCTTTCACAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.37, G:0.26, T:0.21
Consensus pattern (20 bp):
TCACACGAGCATGTGCCTCC
Found at i:76838184 original size:29 final size:29
Alignment explanation
Indices: 76838150--76838227 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
76838140 GTGACGAGAT
* *
76838150 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
76838179 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
76838208 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
76838228 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:76846035 original size:29 final size:28
Alignment explanation
Indices: 76846002--76846129 Score: 104
Period size: 28 Copynumber: 4.6 Consensus size: 28
76845992 GNGTGACGAG
*
76846002 ATGGCACTAAGTGTGCGTGCTGGAAATAT
1 ATGGCACTAAGTGTGCGAGCTGGAAA-AT
76846031 ATGGCACTAAGTGTGC-AGCTGGAAAAT
1 ATGGCACTAAGTGTGCGAGCTGGAAAAT
* * ***
76846058 ACGGCACT--GTGTGCGAGCTCGAGGGT
1 ATGGCACTAAGTGTGCGAGCTGGAAAAT
** * *
76846084 ATGGCACTGTGTGTGCGGGCT--TAAAT
1 ATGGCACTAAGTGTGCGAGCTGGAAAAT
76846110 ACGTGGCACTAAGTGTGCGA
1 A--TGGCACTAAGTGTGCGA
76846130 AATCGAGTAT
Statistics
Matches: 79, Mismatches: 15, Indels: 11
0.75 0.14 0.10
Matches are distributed among these distances:
25 6 0.08
26 16 0.20
27 9 0.11
28 32 0.41
29 16 0.20
ACGTcount: A:0.24, C:0.17, G:0.34, T:0.24
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTGGAAAAT
Found at i:76848833 original size:29 final size:29
Alignment explanation
Indices: 76848799--76848876 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
76848789 GTGACGAGAT
* *
76848799 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
76848828 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
76848857 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
76848877 CGAGGGTATG
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:76856669 original size:29 final size:29
Alignment explanation
Indices: 76856635--76856712 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
76856625 GTGACGAGAT
* *
76856635 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
76856664 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
76856693 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
76856713 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:76860771 original size:79 final size:81
Alignment explanation
Indices: 76860635--76860817 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
76860625 TTGAATGATG
* * *
76860635 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAAGCATT
*
76860699 CGTGTGAGTTACTA-A
66 CGTGCGAGTTACTATA
* * **
76860714 TTCCGGGCTAAGT-CCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAAGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAAGCA
*
76860776 TTTGTGCGAGTTACTATA
64 TTCGTGCGAGTTACTATA
* *
76860794 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
76860818 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAAGCATT
CGTGCGAGTTACTATA
Found at i:76860826 original size:40 final size:40
Alignment explanation
Indices: 76860635--76860819 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
76860625 TTGAATGATG
* * *
76860635 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
76860675 TCCGGACTAAGAT-CCGAAGGCATTCGTGTGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76860715 TCCGGGCTAAGT-CCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
76860754 TCCGGGTTAAGTCCCGAAAGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
76860795 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76860820 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 36 0.29
40 80 0.65
41 8 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76860841 original size:79 final size:79
Alignment explanation
Indices: 76860636--76860850 Score: 210
Period size: 79 Copynumber: 2.7 Consensus size: 79
76860626 TGAATGATGT
* * *
76860636 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAGATCCGAAAGCATT
* *
76860699 CGTGTGAGTTACTAATT
63 CGTGCGAGTTACTAATA
* *
76860716 CCGGGCTAAGT-CCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAG-TCCCGAAAGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGAT-CCGAAAGCATT
*
76860778 TGTGCGAGTTACT-ATAA
63 CGTGCGAGTTACTAAT-A
* **
76860795 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA-ACTCCGAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGA-TCCGAA
76860851 GGTACGTGAT
Statistics
Matches: 112, Mismatches: 13, Indels: 21
0.77 0.09 0.14
Matches are distributed among these distances:
78 3 0.03
79 65 0.58
80 44 0.39
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGATCCGAAAGCATTCGT
GCGAGTTACTAATA
Found at i:76864949 original size:7 final size:8
Alignment explanation
Indices: 76864924--76864954 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
76864914 ATGATAAGAG
76864924 AAATATAA
1 AAATATAA
76864932 AAATATAA
1 AAATATAA
76864940 AAATAT-A
1 AAATATAA
76864947 AAATATAA
1 AAATATAA
76864955 GATAATTATC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 7 0.32
8 15 0.68
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (8 bp):
AAATATAA
Found at i:76864951 original size:15 final size:16
Alignment explanation
Indices: 76864924--76864954 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
76864914 ATGATAAGAG
76864924 AAATATAAAAATATAA
1 AAATATAAAAATATAA
76864940 AAATAT-AAAATATAA
1 AAATATAAAAATATAA
76864955 GATAATTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
AAATATAAAAATATAA
Found at i:76867262 original size:32 final size:32
Alignment explanation
Indices: 76867226--76867330 Score: 79
Period size: 32 Copynumber: 3.3 Consensus size: 32
76867216 TTGGGCTTAA
76867226 AAAGCCTTCAGTAGCGGTATTATAATTGGCAC
1 AAAGCCTTCAGTAGCGGTATTATAATTGGCAC
* * * **
76867258 AAAGCCATT-GGTAACTGTATTATGTTTGGCAC
1 AAAGCC-TTCAGTAGCGGTATTATAATTGGCAC
* * * * *
76867290 ATAGCCATCAGT-GACGGTAATATAATCGACAC
1 AAAGCCTTCAGTAG-CGGTATTATAATTGGCAC
*
76867322 ACAGCCTTC
1 AAAGCCTTC
76867331 GGTAAATATG
Statistics
Matches: 53, Mismatches: 17, Indels: 6
0.70 0.22 0.08
Matches are distributed among these distances:
31 1 0.02
32 50 0.94
33 2 0.04
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (32 bp):
AAAGCCTTCAGTAGCGGTATTATAATTGGCAC
Found at i:76867460 original size:22 final size:22
Alignment explanation
Indices: 76867399--76867460 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 22
76867389 AATACAATTA
* *
76867399 GCACAAAGCCATAATCAAGATG
1 GCACAAAGCCATAATTAGGATG
* *
76867421 GCACAAAGCCATATTTAGGTTG
1 GCACAAAGCCATAATTAGGATG
*
76867443 GCACAGAGCCATAATTAG
1 GCACAAAGCCATAATTAG
76867461 AATAATTGGC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.19
Consensus pattern (22 bp):
GCACAAAGCCATAATTAGGATG
Found at i:76867908 original size:27 final size:27
Alignment explanation
Indices: 76867870--76867936 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 27
76867860 AAGGGCAAAA
* * * * *
76867870 CAGTCATTTTACCCTACAGGGGTATTT
1 CAGTAATTTTACACTACAAGGGTAATC
76867897 CAGTAATTTTACACTACAAGGGTAATC
1 CAGTAATTTTACACTACAAGGGTAATC
*
76867924 CGGTAATTTTACA
1 CAGTAATTTTACA
76867937 AACTGGGGGT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.34
Consensus pattern (27 bp):
CAGTAATTTTACACTACAAGGGTAATC
Found at i:76867946 original size:27 final size:27
Alignment explanation
Indices: 76867916--76867974 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
76867906 TACACTACAA
*
76867916 GGGTAATCCGGTAATTTTACAAACTGG
1 GGGTAATCCGATAATTTTACAAACTGG
* * * *
76867943 GGGTATTTCGATAATTTTACAGATTGG
1 GGGTAATCCGATAATTTTACAAACTGG
76867970 GGGTA
1 GGGTA
76867975 TTTTTATAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.27, C:0.10, G:0.29, T:0.34
Consensus pattern (27 bp):
GGGTAATCCGATAATTTTACAAACTGG
Found at i:76867975 original size:27 final size:27
Alignment explanation
Indices: 76867927--76868085 Score: 160
Period size: 27 Copynumber: 5.9 Consensus size: 27
76867917 GGTAATCCGG
*
76867927 TAATTTTACAAACTGGGGGTATTTCGA
1 TAATTTTACAAATTGGGGGTATTTCGA
* **
76867954 TAATTTTACAGATTGGGGGTATTTTTA
1 TAATTTTACAAATTGGGGGTATTTCGA
* * * * *
76867981 TAATTTCAAAAACTGAGGGTATTT-TA
1 TAATTTTACAAATTGGGGGTATTTCGA
*
76868007 GTAATTTTACAAATCGGGGGTATTTCAGA
1 -TAATTTTACAAATTGGGGGTATTTC-GA
* **
76868036 -AATTTTACAAATCGGGGGTATTTTAA
1 TAATTTTACAAATTGGGGGTATTTCGA
*
76868062 TAATTTTACAAATTGAGGGTATTT
1 TAATTTTACAAATTGGGGGTATTT
76868086 GTAACACCCC
Statistics
Matches: 109, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
26 3 0.03
27 105 0.96
29 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAATTGGGGGTATTTCGA
Found at i:76868011 original size:81 final size:81
Alignment explanation
Indices: 76867926--76868085 Score: 234
Period size: 81 Copynumber: 2.0 Consensus size: 81
76867916 GGGTAATCCG
* * *
76867926 GTAATTTTACAAA-CTGGGGGTATTTC-GATAATTTTACAGATTGGGGGTATTTTTATAATTTCA
1 GTAATTTTACAAATC-GGGGGTATTTCAGA-AATTTTACAAATCGGGGGTATTTTAATAATTTCA
76867989 AAAACTGAGGGTATTTTA
64 AAAACTGAGGGTATTTTA
* *
76868007 GTAATTTTACAAATCGGGGGTATTTCAGAAATTTTACAAATCGGGGGTATTTTAATAATTTTACA
1 GTAATTTTACAAATCGGGGGTATTTCAGAAATTTTACAAATCGGGGGTATTTTAATAATTTCAAA
*
76868072 AATTGAGGGTATTT
66 AACTGAGGGTATTT
76868086 GTAACACCCC
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
81 68 0.96
82 3 0.04
ACGTcount: A:0.32, C:0.07, G:0.21, T:0.40
Consensus pattern (81 bp):
GTAATTTTACAAATCGGGGGTATTTCAGAAATTTTACAAATCGGGGGTATTTTAATAATTTCAAA
AACTGAGGGTATTTTA
Found at i:76868835 original size:38 final size:38
Alignment explanation
Indices: 76868776--76868883 Score: 180
Period size: 38 Copynumber: 2.8 Consensus size: 38
76868766 TCAATCATGC
*
76868776 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
* *
76868815 ACTGGGCCGAAGCCTTTTCATGTTTTATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
76868853 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
76868884 ACTGGGCCGA
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
38 53 0.83
39 11 0.17
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.41
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:76868879 original size:31 final size:30
Alignment explanation
Indices: 76868837--76868900 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 30
76868827 CCTTTTCATG
76868837 TTTTATATTTCATAATACTGGGCCGAAGCC
1 TTTTATATTTCATAATACTGGGCCGAAGCC
*
76868867 TTTTCATATTTCATATTACTGGGCCGAAGCC
1 TTTT-ATATTTCATAATACTGGGCCGAAGCC
76868898 TTT
1 TTT
76868901 ACTATAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 4 0.12
31 28 0.88
ACGTcount: A:0.23, C:0.20, G:0.16, T:0.41
Consensus pattern (30 bp):
TTTTATATTTCATAATACTGGGCCGAAGCC
Found at i:76869137 original size:24 final size:24
Alignment explanation
Indices: 76869091--76869209 Score: 145
Period size: 24 Copynumber: 5.0 Consensus size: 24
76869081 GCTTTATCAT
*
76869091 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
76869116 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
76869140 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
* **
76869163 ATAACTAGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTA
76869187 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
76869210 TCACTTCCTC
Statistics
Matches: 83, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
23 23 0.28
24 47 0.57
25 13 0.16
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:76869180 original size:47 final size:48
Alignment explanation
Indices: 76869091--76869209 Score: 163
Period size: 47 Copynumber: 2.5 Consensus size: 48
76869081 GCTTTATCAT
* *
76869091 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTAGGGCCAAAGCCCTTTCA
*
76869140 ATAACTGGGGCATAAGCCCTTTT-ATAACTAGGG-CATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCCA-AAGCCCTTTCA
76869187 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
76869210 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
46 2 0.03
47 42 0.65
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCCAAAGCCCTTTCA
Found at i:76869285 original size:20 final size:20
Alignment explanation
Indices: 76869260--76869319 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
76869250 TATGATTACC
76869260 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
76869280 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
76869300 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
76869320 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:76869290 original size:11 final size:11
Alignment explanation
Indices: 76869260--76869314 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
76869250 TATGATTACC
76869260 TCATGTGCATA
1 TCATGTGCATA
*
76869271 TCA--TACATA
1 TCATGTGCATA
76869280 TCATGTGCATA
1 TCATGTGCATA
* *
76869291 TCA--TACATT
1 TCATGTGCATA
76869300 TCATGTGCATA
1 TCATGTGCATA
76869311 TCAT
1 TCAT
76869315 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:76869394 original size:25 final size:25
Alignment explanation
Indices: 76869362--76869409 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
76869352 ATACATAAAC
* * *
76869362 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
76869387 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
76869410 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:76871181 original size:26 final size:27
Alignment explanation
Indices: 76871108--76871189 Score: 98
Period size: 26 Copynumber: 3.1 Consensus size: 27
76871098 GGATGTTACA
76871108 GTATTTCAGTAATTTTACAAAAT-AGGG
1 GTATTTCAGTAATTTTAC-AAATCAGGG
*
76871135 GTATTTC-GATAATCTTACAAATCA-GG
1 GTATTTCAG-TAATTTTACAAATCAGGG
* *
76871161 GTATTTCAGTAATTTTTCAAATCGGGG
1 GTATTTCAGTAATTTTACAAATCAGGG
76871188 GT
1 GT
76871190 CTTAACGACC
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
26 26 0.55
27 21 0.45
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAATCAGGG
Found at i:76879275 original size:93 final size:93
Alignment explanation
Indices: 76879163--76879334 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
76879153 GCCCATAAGT
* *
76879163 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
76879228 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
76879256 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
76879321 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
76879335 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:76879330 original size:46 final size:46
Alignment explanation
Indices: 76879155--76879330 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
76879145 TGTAACCCGC
* * *
76879155 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
76879201 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
76879251 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
76879294 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
76879331 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:76883349 original size:16 final size:16
Alignment explanation
Indices: 76883328--76883361 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
76883318 TTTATTGTAA
76883328 ATGAATTAATATATAT
1 ATGAATTAATATATAT
76883344 ATGAATTAATATATAT
1 ATGAATTAATATATAT
76883360 AT
1 AT
76883362 ATATGTGTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (16 bp):
ATGAATTAATATATAT
Found at i:76883370 original size:2 final size:2
Alignment explanation
Indices: 76883365--76883399 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
76883355 TATATATATA
76883365 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
76883400 TATTATACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:76891747 original size:27 final size:27
Alignment explanation
Indices: 76891718--76891827 Score: 116
Period size: 27 Copynumber: 4.1 Consensus size: 27
76891708 ATATATACTG
*
76891718 CACATAAGGGCAAAACAGTCATCTTAG
1 CACATAAGGGCAAAACAGTCATCTTAC
* * * *
76891745 CACACAAGGGCAAAATAATTTC-TTTTAC
1 CACATAAGGGCAAAA-CA-GTCATCTTAC
*
76891773 CACATAAGGGCAAAACAGTCATGTTAC
1 CACATAAGGGCAAAACAGTCATCTTAC
* *
76891800 CACATAAAGGC-AAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATCTTAC
76891826 CA
1 CA
76891828 TTTAGGGGTC
Statistics
Matches: 69, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
26 18 0.26
27 30 0.43
28 19 0.28
29 2 0.03
ACGTcount: A:0.41, C:0.23, G:0.15, T:0.22
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATCTTAC
Found at i:76908521 original size:28 final size:28
Alignment explanation
Indices: 76908475--76908543 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
76908465 TTTAAAACCC
*
76908475 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
76908502 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
76908530 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
76908544 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:76910394 original size:19 final size:18
Alignment explanation
Indices: 76910357--76910400 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
76910347 ATACATACAG
76910357 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
76910374 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
76910393 TACTAATT
1 TAATAATT
76910401 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:76912968 original size:29 final size:29
Alignment explanation
Indices: 76912929--76913007 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
76912919 CTTAATAATC
*
76912929 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
76912959 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
76912988 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
76913008 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:76920434 original size:46 final size:46
Alignment explanation
Indices: 76920384--76920558 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
76920374 TGGTTGAGCA
76920384 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
76920430 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
76920475 CATCCGAGCTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
76920522 -CCTAAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76920559 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 3 0.03
45 18 0.17
46 50 0.47
47 23 0.21
49 4 0.04
50 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:76920539 original size:92 final size:93
Alignment explanation
Indices: 76920381--76920551 Score: 292
Period size: 92 Copynumber: 1.8 Consensus size: 93
76920371 GGATGGTTGA
*
76920381 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
76920446 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
76920474 GCATCCGAGCTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACG-CCTAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAA-CTCGTTGAG
76920537 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
76920552 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
91 4 0.05
92 47 0.64
93 23 0.31
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:76928110 original size:45 final size:44
Alignment explanation
Indices: 76927949--76928124 Score: 194
Period size: 45 Copynumber: 3.9 Consensus size: 44
76927939 ATGGTTGAGC
*
76927949 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * * * *
76927993 ATGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAACTAG-GC
1 A--TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGA
76928042 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* *
76928086 ACCCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 ATCC-GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76928125 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 11, Indels: 19
0.79 0.08 0.13
Matches are distributed among these distances:
43 1 0.01
44 6 0.05
45 35 0.32
46 32 0.29
47 31 0.28
48 2 0.02
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (44 bp):
ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:76931404 original size:29 final size:29
Alignment explanation
Indices: 76931365--76931443 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
76931355 CTTAATAATC
*
76931365 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
76931395 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
76931424 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
76931444 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:76932110 original size:2 final size:2
Alignment explanation
Indices: 76932088--76932129 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
76932078 TGATGGCCGA
* * *
76932088 AT AT GT AT AT CT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76932130 CAACTATACT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Done.