Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 268 of 444
Found at i:76937293 original size:23 final size:23
Alignment explanation
Indices: 76937263--76937314 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
76937253 ATGAAGGGCC
76937263 ACGCCCGTTTTGTTTTGGCAGGT
1 ACGCCCGTTTTGTTTTGGCAGGT
76937286 ACGCCCGTTTTGTTTTGGCAGGT
1 ACGCCCGTTTTGTTTTGGCAGGT
*
76937309 TCGCCC
1 ACGCCC
76937315 ACTGTTGCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.08, C:0.27, G:0.29, T:0.37
Consensus pattern (23 bp):
ACGCCCGTTTTGTTTTGGCAGGT
Found at i:76941531 original size:13 final size:13
Alignment explanation
Indices: 76941513--76941538 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76941503 GCTCGGCAGG
76941513 GACACGCCCGTGT
1 GACACGCCCGTGT
76941526 GACACGCCCGTGT
1 GACACGCCCGTGT
76941539 ACGATTACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:76941849 original size:192 final size:192
Alignment explanation
Indices: 76941522--76941905 Score: 741
Period size: 192 Copynumber: 2.0 Consensus size: 192
76941512 GGACACGCCC
76941522 GTGTGACACGCCCGTGTACGATTACTTCAGGCCGTGATCAAGCTTGTTAAATAGGCACGAGCGTG
1 GTGTGACACGCCCGTGTACGATTACTTCAGGCCGTGATCAAGCTTGTTAAATAGGCACGAGCGTG
76941587 TGGTCCACCAGTGTGAGTTGTGCGTCGATTCTGCCAAATTGACACGGCCGTGTGGTCTGCCCGTG
66 TGGTCCACCAGTGTGAGTTGTGCGTCGATTCTGCCAAATTGACACGGCCGTGTGGTCTGCCCGTG
76941652 TGAGGAGGTCCAAACTGTGTTGATTTCGTACGTTGGCCCATTTTCTCTGTTTTTGGCCCGTT
131 TGAGGAGGTCCAAACTGTGTTGATTTCGTACGTTGGCCCATTTTCTCTGTTTTTGGCCCGTT
*
76941714 GTGTGACACGCCCGTGTACGATTACTTCAGGTCGTGATCAAGCTTGTTAAATAGGCACGAGCGTG
1 GTGTGACACGCCCGTGTACGATTACTTCAGGCCGTGATCAAGCTTGTTAAATAGGCACGAGCGTG
* *
76941779 TGGTCCACCAGTGTGAGTTGTGCGTCGATTCTGCCAAATTGACATGGCCGTTTGGTCTGCCCGTG
66 TGGTCCACCAGTGTGAGTTGTGCGTCGATTCTGCCAAATTGACACGGCCGTGTGGTCTGCCCGTG
76941844 TGAGGAGGTCCAAACTGTGTTGATTTCGTACGTTGGCCCATTTTCTCTGTTTTTGGCCCGTT
131 TGAGGAGGTCCAAACTGTGTTGATTTCGTACGTTGGCCCATTTTCTCTGTTTTTGGCCCGTT
76941906 ACTCGTTCCT
Statistics
Matches: 189, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
192 189 1.00
ACGTcount: A:0.17, C:0.23, G:0.29, T:0.32
Consensus pattern (192 bp):
GTGTGACACGCCCGTGTACGATTACTTCAGGCCGTGATCAAGCTTGTTAAATAGGCACGAGCGTG
TGGTCCACCAGTGTGAGTTGTGCGTCGATTCTGCCAAATTGACACGGCCGTGTGGTCTGCCCGTG
TGAGGAGGTCCAAACTGTGTTGATTTCGTACGTTGGCCCATTTTCTCTGTTTTTGGCCCGTT
Found at i:76944060 original size:40 final size:40
Alignment explanation
Indices: 76944005--76944145 Score: 187
Period size: 40 Copynumber: 3.5 Consensus size: 40
76943995 CATTTGAATG
76944005 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
76944045 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * * *
76944085 ATGTCCGGGTTAAGACCAGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
76944125 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
76944146 AAACTTGGGT
Statistics
Matches: 88, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
38 1 0.01
39 11 0.12
40 76 0.86
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:76949788 original size:13 final size:13
Alignment explanation
Indices: 76949770--76949794 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76949760 ATTAGAAGGG
76949770 TTCTCTCGTTTTC
1 TTCTCTCGTTTTC
76949783 TTCTCTCGTTTT
1 TTCTCTCGTTTT
76949795 TGTTCCTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.28, G:0.08, T:0.64
Consensus pattern (13 bp):
TTCTCTCGTTTTC
Found at i:76967732 original size:40 final size:40
Alignment explanation
Indices: 76967624--76967873 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
76967614 CGGGATTTAA
* * * * *
76967624 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
76967664 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76967704 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76967744 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76967784 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76967824 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76967864 CCGGATATAT
1 CCGGATATAT
76967874 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:76975906 original size:40 final size:40
Alignment explanation
Indices: 76975798--76976007 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
76975788 CGGGATTTAA
* * * * *
76975798 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
76975838 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76975878 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76975918 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76975958 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76975998 CCGGATATAT
1 CCGGATATAT
76976008 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:76978504 original size:20 final size:20
Alignment explanation
Indices: 76978456--76978519 Score: 67
Period size: 20 Copynumber: 3.0 Consensus size: 20
76978446 ATCATGTTAG
*
76978456 ATGTTAGAATTGACTTGGTTAT
1 ATGTTTGAATTGA-TTGG-TAT
*
76978478 AATGTTTGAATTGGTTGGTAT
1 -ATGTTTGAATTGATTGGTAT
76978499 ATGTTTGCAATT-ATTGGTAT
1 ATGTTTG-AATTGATTGGTAT
76978519 A
1 A
76978520 GATTGTTGGA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
20 15 0.41
21 7 0.19
22 4 0.11
23 11 0.30
ACGTcount: A:0.27, C:0.03, G:0.23, T:0.47
Consensus pattern (20 bp):
ATGTTTGAATTGATTGGTAT
Found at i:76988444 original size:16 final size:17
Alignment explanation
Indices: 76988417--76988449 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
76988407 TATCTATCAG
*
76988417 TATAGTATAAGGTACAT
1 TATAGTATAAGGAACAT
76988434 TATAG-ATAAGGAACAT
1 TATAGTATAAGGAACAT
76988450 ACTCGTGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.45, C:0.06, G:0.18, T:0.30
Consensus pattern (17 bp):
TATAGTATAAGGAACAT
Found at i:76989580 original size:15 final size:15
Alignment explanation
Indices: 76989560--76989593 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
76989550 TCACAGGTGA
76989560 AGCTGATACCTCTTT
1 AGCTGATACCTCTTT
76989575 AGCTGATACCTCTTT
1 AGCTGATACCTCTTT
76989590 AGCT
1 AGCT
76989594 TCAACATTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (15 bp):
AGCTGATACCTCTTT
Found at i:76991997 original size:14 final size:14
Alignment explanation
Indices: 76991978--76992006 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
76991968 AGAGAGAACA
76991978 GTCAGCACAAAGAG
1 GTCAGCACAAAGAG
76991992 GTCAGCACAAAGAG
1 GTCAGCACAAAGAG
76992006 G
1 G
76992007 GTAAAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.21, G:0.31, T:0.07
Consensus pattern (14 bp):
GTCAGCACAAAGAG
Found at i:77005719 original size:30 final size:30
Alignment explanation
Indices: 77005684--77005741 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
77005674 TAGGCACTTC
*
77005684 CACACAGGT-GATCCACACGCCCGTGTGTGA
1 CACACAAGTAGAT-CACACGCCCGTGTGTGA
*
77005714 CACACAATTAGATCACACGCCCGTGTGT
1 CACACAAGTAGATCACACGCCCGTGTGT
77005742 CATGGCTATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.88
31 3 0.12
ACGTcount: A:0.26, C:0.33, G:0.22, T:0.19
Consensus pattern (30 bp):
CACACAAGTAGATCACACGCCCGTGTGTGA
Found at i:77008622 original size:47 final size:47
Alignment explanation
Indices: 77008547--77008657 Score: 161
Period size: 47 Copynumber: 2.4 Consensus size: 47
77008537 CCCCTCGGGA
* * *
77008547 CTTATCACATT-TATACACTTTCATATTCATCGCATTGGCCATTCGGC
1 CTTATCAC-TTATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
77008594 CTTATCACTTATATACACTTTGACATTCATCACATCGGCCATTCGGC
1 CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
77008641 CTTATCACATATATACA
1 CTTATCACTTATATACA
77008658 TCTCATACAT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 2 0.03
47 56 0.97
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.36
Consensus pattern (47 bp):
CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTCGGC
Found at i:77008713 original size:46 final size:46
Alignment explanation
Indices: 77008661--77008842 Score: 337
Period size: 46 Copynumber: 4.0 Consensus size: 46
77008651 ATATACATCT
* * *
77008661 CATACATGTTTCATACTAGCCATTTGGCTTTACCACACATATATCT
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
77008707 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
77008753 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
77008799 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
77008843 ATATTTAACT
Statistics
Matches: 133, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 133 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.34
Consensus pattern (46 bp):
CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
Found at i:77014580 original size:40 final size:40
Alignment explanation
Indices: 77014524--77014691 Score: 170
Period size: 40 Copynumber: 4.2 Consensus size: 40
77014514 CAATTGAATG
*
77014524 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGTGACTT
77014565 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG--TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AG-TGACTT
* * * *
77014604 AAATCCGGGCTAATACCCGAAGGCATTTGTGCA-AGACGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGAC-TT
*
77014644 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCATGTG-GTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCA-GTGACTT
77014684 ATATCCGG
1 ATATCCGG
77014692 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 11, Indels: 21
0.77 0.08 0.15
Matches are distributed among these distances:
37 1 0.01
39 8 0.08
40 92 0.87
41 4 0.04
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGACTT
Found at i:77014659 original size:80 final size:80
Alignment explanation
Indices: 77014526--77014691 Score: 237
Period size: 80 Copynumber: 2.1 Consensus size: 80
77014516 ATTGAATGAT
* *
77014526 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGACTTTATCCGGGCTAAGACCCGAAGGCATT
*
77014591 CGTGCAAGTTGTTAA
66 CGTGCAAGTGGTTAA
* *
77014606 ATCCGGGCTAATACCCGAAGGCATTTGTGC-A-AGACGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGAC-TT-TATCCGGGCTAAGACCCGAAGGCA
* *
77014669 TTCGTGCATGTGGTTAT
64 TTCGTGCAAGTGGTTAA
77014686 ATCCGG
1 ATCCGG
77014692 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
78 3 0.04
79 3 0.04
80 71 0.92
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGACTTTATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGTTAA
Found at i:77019413 original size:40 final size:40
Alignment explanation
Indices: 77019357--77019524 Score: 161
Period size: 40 Copynumber: 4.2 Consensus size: 40
77019347 CAATTGAATG
*
77019357 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGTGACTT
*
77019398 -TATCCGGGCTAAGACCCGAAGGC-GTTCGTGCAAGTTG--TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AG-TGACTT
* * * *
77019437 AAATCCGGGCTAATACCCGAAGGCATTTGTGCA-AGACGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGAC-TT
*
77019477 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCATGTG-GTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCA-GTGACTT
77019517 ATATCCGG
1 ATATCCGG
77019525 TTGTATTCCG
Statistics
Matches: 105, Mismatches: 12, Indels: 21
0.76 0.09 0.15
Matches are distributed among these distances:
37 1 0.01
39 7 0.07
40 92 0.88
41 4 0.04
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGACTT
Found at i:77019492 original size:80 final size:80
Alignment explanation
Indices: 77019359--77019524 Score: 228
Period size: 80 Copynumber: 2.1 Consensus size: 80
77019349 ATTGAATGAT
* * *
77019359 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCGTT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGACTTTATCCGGGCTAAGACCCGAAGGCATT
*
77019424 CGTGCAAGTTGTTAA
66 CGTGCAAGTGGTTAA
* *
77019439 ATCCGGGCTAATACCCGAAGGCATTTGTGC-A-AGACGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGAC-TT-TATCCGGGCTAAGACCCGAAGGCA
* *
77019502 TTCGTGCATGTGGTTAT
64 TTCGTGCAAGTGGTTAA
77019519 ATCCGG
1 ATCCGG
77019525 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
78 3 0.04
79 3 0.04
80 70 0.92
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGACTTTATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGTTAA
Found at i:77022622 original size:102 final size:102
Alignment explanation
Indices: 77022441--77022644 Score: 390
Period size: 102 Copynumber: 2.0 Consensus size: 102
77022431 TTTAACAGTG
77022441 TGATTATGTGATTGATATTATGATGCATGACTGTATTATTTGGTATGAGATTGGTTGTATATATG
1 TGATTATGTGATTGATATTATGATGCATGACTGTATTATTTGGTATGAGATTGGTTGTATATATG
77022506 GCATGATTTACTGAAATCTGAGTTTATGCATGATATA
66 GCATGATTTACTGAAATCTGAGTTTATGCATGATATA
*
77022543 TGATTATGTGATTGATATTATGATGCATGACTGTATTATTTGGTATGAGATTGGTTGTATGTATG
1 TGATTATGTGATTGATATTATGATGCATGACTGTATTATTTGGTATGAGATTGGTTGTATATATG
*
77022608 GCATGATTTGCTGAAATCTGAGTTTATGCATGATATA
66 GCATGATTTACTGAAATCTGAGTTTATGCATGATATA
77022645 ATTGCCTGGA
Statistics
Matches: 100, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
102 100 1.00
ACGTcount: A:0.27, C:0.06, G:0.24, T:0.43
Consensus pattern (102 bp):
TGATTATGTGATTGATATTATGATGCATGACTGTATTATTTGGTATGAGATTGGTTGTATATATG
GCATGATTTACTGAAATCTGAGTTTATGCATGATATA
Found at i:77034261 original size:16 final size:17
Alignment explanation
Indices: 77034232--77034263 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
77034222 TAAGGTCACT
77034232 TCATAATGATCATGAAC
1 TCATAATGATCATGAAC
77034249 TCATAAT-ATCATGAA
1 TCATAATGATCATGAA
77034264 GCCAATGCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (17 bp):
TCATAATGATCATGAAC
Found at i:77034539 original size:42 final size:42
Alignment explanation
Indices: 77034493--77034577 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 42
77034483 ACGATGTCTT
* *
77034493 ATATCGATGCCATGTCCCAGACATGGTCTTACACAAAATCAC
1 ATATCGATGCCATATACCAGACATGGTCTTACACAAAATCAC
** * *
77034535 ATATCGATGCCATATACTTGATATGGTCTTACACGAAATCAC
1 ATATCGATGCCATATACCAGACATGGTCTTACACAAAATCAC
77034577 A
1 A
77034578 CATAACCCTA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (42 bp):
ATATCGATGCCATATACCAGACATGGTCTTACACAAAATCAC
Found at i:77038053 original size:40 final size:40
Alignment explanation
Indices: 77037972--77038192 Score: 324
Period size: 40 Copynumber: 5.6 Consensus size: 40
77037962 AAACCAAGTA
* * * *
77037972 CCTTCGGGGCTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAATTG
77038011 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
77038051 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
* *
77038091 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
* *
77038131 CCTTC-GGACTTGGCCCGGATATAGTAACTCGCACAAATT-
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC-AATTG
77038170 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
77038193 CAATCCGAAT
Statistics
Matches: 168, Mismatches: 10, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
39 47 0.28
40 121 0.72
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
Found at i:77040665 original size:40 final size:40
Alignment explanation
Indices: 77040621--77040787 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
77040611 TCGAATATAA
77040621 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
77040661 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
77040701 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
77040741 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
77040780 CCGGATAT
1 CCGGATAT
77040788 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:77045653 original size:40 final size:39
Alignment explanation
Indices: 77045567--77045750 Score: 156
Period size: 40 Copynumber: 4.6 Consensus size: 39
77045557 AAATTGAATG
* * * * *
77045567 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAA-AATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC--AAGTAGT
* * *
77045607 ACATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAG-T
*
77045647 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAG-T
* * * *
77045687 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
* * *
77045726 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
77045751 CTTGGTGCGG
Statistics
Matches: 118, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
38 1 0.01
39 5 0.04
40 110 0.93
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
Found at i:77049834 original size:56 final size:56
Alignment explanation
Indices: 77049762--77050061 Score: 485
Period size: 56 Copynumber: 5.4 Consensus size: 56
77049752 ATCCCAATAG
* * *
77049762 GGTCTTACTCGCACACATTTATCGAAGTCACATATCGATGCCAATGTATAAAACAT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
*
77049818 GGTCTTACCCGCACACATATATCTG-AGTCACATATCGATGCCAACGTATAAAACGT
1 GGTCTTACTCGCACACATATATC-GAAGTCACATATCGATGCCAACGTATAAAACGT
*
77049874 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAATGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
* *
77049930 AGTCTTACTCGTACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
* *
77049986 GGTCTTACTCACACACATATATCGATGTCACATATCGATGCCAACGTATAAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
* *
77050042 AGTCTTAGTCGCACACATAT
1 GGTCTTACTCGCACACATAT
77050062 CGGAATCCTA
Statistics
Matches: 226, Mismatches: 16, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
55 1 0.00
56 224 0.99
57 1 0.00
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
Found at i:77051478 original size:19 final size:20
Alignment explanation
Indices: 77051431--77051474 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
77051421 TAGGTTACTT
*
77051431 TGGGCCATGATGGGCCTAGA
1 TGGGCCATGATGGGCCCAGA
77051451 TGGGCCATG-TGGGCCCA-A
1 TGGGCCATGATGGGCCCAGA
77051469 TGGGCC
1 TGGGCC
77051475 CATGGGCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.30
19 7 0.30
20 9 0.39
ACGTcount: A:0.16, C:0.25, G:0.41, T:0.18
Consensus pattern (20 bp):
TGGGCCATGATGGGCCCAGA
Found at i:77051586 original size:27 final size:27
Alignment explanation
Indices: 77051544--77051597 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
77051534 AATCTCATAT
* * *
77051544 CTGTAGGCTAGCATTACTAAAGTACCC
1 CTGTAGGCTAGAATTACCAAAATACCC
*
77051571 CTGTAGGGTAGAATTACCAAAATACCC
1 CTGTAGGCTAGAATTACCAAAATACCC
77051598 TTGGTTTACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (27 bp):
CTGTAGGCTAGAATTACCAAAATACCC
Found at i:77051639 original size:21 final size:22
Alignment explanation
Indices: 77051613--77051654 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
77051603 TTACAAAATT
*
77051613 ACCAAAATA-CCCTGGTTTGTA
1 ACCAAAATACCCCTGATTTGTA
77051634 ACCAAAATACCCCTGATTTGT
1 ACCAAAATACCCCTGATTTGT
77051655 GAAATTATCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (22 bp):
ACCAAAATACCCCTGATTTGTA
Found at i:77051670 original size:27 final size:27
Alignment explanation
Indices: 77051638--77051892 Score: 235
Period size: 27 Copynumber: 9.4 Consensus size: 27
77051628 TTTGTAACCA
* *
77051638 AAATACCCCTGATTTGTGAAATTATCG
1 AAATACCCTTGATTTGTAAAATTATCG
** *
77051665 AAATACCCTTGACCTGTAAAATTACCG
1 AAATACCCTTGATTTGTAAAATTATCG
*
77051692 AAATA-CCTTCGACTTGTAAAATTATCG
1 AAATACCCTT-GATTTGTAAAATTATCG
* * * *
77051719 AAATACCCTCGATTTGTAAAGTTACCA
1 AAATACCCTTGATTTGTAAAATTATCG
* *
77051746 AAATACCCTTGATTTGGAAAAGTATCG
1 AAATACCCTTGATTTGTAAAATTATCG
* *
77051773 AAATACCCTTAATTTGGAAAATTA-CAG
1 AAATACCCTTGATTTGTAAAATTATC-G
** *
77051800 AAATACCCTTGACTTTCAAAAATTATAG
1 AAATACCCTTGA-TTTGTAAAATTATCG
* * * *
77051828 AAATACCATTGCTTTGCAAAATTATTG
1 AAATACCCTTGATTTGTAAAATTATCG
* * * *
77051855 AAATACCCTTGGTTTGTAGATTTACCG
1 AAATACCCTTGATTTGTAAAATTATCG
*
77051882 AAACACCCTTG
1 AAATACCCTTG
77051893 TAGGATGAAA
Statistics
Matches: 186, Mismatches: 37, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
26 5 0.03
27 157 0.84
28 24 0.13
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (27 bp):
AAATACCCTTGATTTGTAAAATTATCG
Found at i:77051960 original size:27 final size:27
Alignment explanation
Indices: 77051922--77052023 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 27
77051912 TACCCTACTA
* * *
77051922 GGTAAAAAGACCGTAATGCCCTTGTAG
1 GGTAAAATGACCATAATGCCCCTGTAG
* *
77051949 GGTAAAATGACCATAAAGCCCCTGTGG
1 GGTAAAATGACCATAATGCCCCTGTAG
* * * *
77051976 GGTAAAGTGACCATAATACCCCTATAT
1 GGTAAAATGACCATAATGCCCCTGTAG
* *
77052003 GGTAAAATGACAATTATGCCC
1 GGTAAAATGACCATAATGCCC
77052024 TTATGTTCCG
Statistics
Matches: 60, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.23
Consensus pattern (27 bp):
GGTAAAATGACCATAATGCCCCTGTAG
Found at i:77052199 original size:27 final size:26
Alignment explanation
Indices: 77052169--77052249 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 26
77052159 GTGACTATGT
77052169 CACATTCACTATTTCTGGTGGCTTTGC
1 CACATT-ACTATTTCTGGTGGCTTTGC
*
77052196 CACAATTACTGA-TACTGGTGGCTTTGC
1 CAC-ATTACT-ATTTCTGGTGGCTTTGC
* **
77052223 CACATTTACTGTTTCTGGCAGCTTTGC
1 CACA-TTACTATTTCTGGTGGCTTTGC
77052250 TGCGATATTG
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
26 1 0.02
27 40 0.89
28 4 0.09
ACGTcount: A:0.17, C:0.25, G:0.20, T:0.38
Consensus pattern (26 bp):
CACATTACTATTTCTGGTGGCTTTGC
Found at i:77061331 original size:20 final size:21
Alignment explanation
Indices: 77061288--77061333 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
77061278 ACTGCTTTGT
77061288 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
77061308 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
77061327 TATGGGC
1 TATGGGC
77061334 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:77061426 original size:60 final size:60
Alignment explanation
Indices: 77061326--77061463 Score: 163
Period size: 60 Copynumber: 2.3 Consensus size: 60
77061316 AACTGTGTTA
* * * *
77061326 ATATGGGCAAGGCCCAATATATCTCGACTTGTAATAGGGCTACGACCCAGATTGATACTG
1 ATATGGGCTAGGCCCAGTATATCTCGAATTGTAATAGGGCTACGACCCAGATTAATACTG
* * * *
77061386 ATATGGGCTAGGCCCAGTATA-CTCTGATATTGTAA-GGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAGTATATCTC-GA-ATTGTAATAGGGCTACGACCCAGATTAATACTG
77061446 ATATGGGCTAAGGCCCAG
1 ATATGGGCT-AGGCCCAG
77061464 ATTAATATTG
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
59 3 0.04
60 50 0.75
61 14 0.21
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAGTATATCTCGAATTGTAATAGGGCTACGACCCAGATTAATACTG
Found at i:77061453 original size:28 final size:28
Alignment explanation
Indices: 77061422--77061487 Score: 123
Period size: 28 Copynumber: 2.4 Consensus size: 28
77061412 ATATTGTAAG
*
77061422 GGGCTATGGCCCAGATTAATATTGATAT
1 GGGCTAAGGCCCAGATTAATATTGATAT
77061450 GGGCTAAGGCCCAGATTAATATTGATAT
1 GGGCTAAGGCCCAGATTAATATTGATAT
77061478 GGGCTAAGGC
1 GGGCTAAGGC
77061488 TTGAACTGAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATATTGATAT
Found at i:77065823 original size:55 final size:54
Alignment explanation
Indices: 77065736--77065986 Score: 259
Period size: 55 Copynumber: 4.7 Consensus size: 54
77065726 ATTAGGGTTT
*
77065736 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * *
77065791 AAGGATATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * * *
77065846 AAAGG-TCCCATGTGAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* *
77065899 AAGGATACCATGTAAAACCATGTCAAGACATGGCAA-TGGTAAGTTT-T-A-G-
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * **
77065948 AAGGATACCACGTAAGACCATGACAAGTTATGGCAATTG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTG
77065987 TGAGGTACCC
Statistics
Matches: 164, Mismatches: 24, Indels: 21
0.78 0.11 0.10
Matches are distributed among these distances:
49 31 0.19
50 3 0.02
51 1 0.01
52 6 0.04
53 39 0.24
54 11 0.07
55 69 0.42
56 4 0.02
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:77065942 original size:108 final size:110
Alignment explanation
Indices: 77065743--77065943 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
77065733 TTTAAGGATA
* *
77065743 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAAA
*
77065808 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
77065853 CCATGTGAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAA
*
77065915 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
77065944 TTAGAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAAA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:77066152 original size:19 final size:19
Alignment explanation
Indices: 77066123--77066166 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
77066113 AGGTAAGTAC
77066123 ATAATGTTCATGTATGCTTG
1 ATAA-GTTCATGTATGCTTG
77066143 ATAAGTTCATGTATGCTTG
1 ATAAGTTCATGTATGCTTG
77066162 ATAAG
1 ATAAG
77066167 GAAAAAGGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 20 0.83
20 4 0.17
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (19 bp):
ATAAGTTCATGTATGCTTG
Found at i:77066222 original size:16 final size:16
Alignment explanation
Indices: 77066201--77066231 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77066191 ATAAATTTGA
77066201 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
77066217 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
77066232 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:77068774 original size:27 final size:27
Alignment explanation
Indices: 77068714--77068778 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
77068704 AAACCCCTAG
*
77068714 TTGTAAAATTACCAAAGTACCCCCGGT
1 TTGTAAAATTACCAAAGTACCCCCGAT
* * *
77068741 TTATAAAATTACCCAAA-TATCCTCGAT
1 TTGTAAAATTA-CCAAAGTACCCCCGAT
77068768 TTGTAAAATTA
1 TTGTAAAATTA
77068779 TCGAAATACC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 27 0.84
28 5 0.16
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTACCAAAGTACCCCCGAT
Found at i:77068832 original size:54 final size:54
Alignment explanation
Indices: 77068774--77069074 Score: 340
Period size: 54 Copynumber: 5.6 Consensus size: 54
77068764 CGATTTGTAA
* * * * * * *
77068774 AATTATCGAAATACCACTATAAGGTACAATTACTGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * *
77068828 AATTACCAAAATACCCTTGTAGGGTAGAATTACTAAAATA-CCCTAGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCT-GTAGGGTAG
* * *
77068882 AATTACCG-AATACCCCTATAGAGTAGAATTACTGAAATACCCCCGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
*
77068935 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
** * *
77068989 AATTACTAAAATACCCCTGTAGGGTAAAATTACT-ACAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGA-AATACCCCTGTAGGGTAG
* * * * *
77069043 AATTATCGAGATA-CCTTGTGGGGTAAAATTAC
1 AATTACCGAAATACCCCTGTAGGGTAGAATTAC
77069075 CATTTTGCCC
Statistics
Matches: 212, Mismatches: 31, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
53 65 0.31
54 147 0.69
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (54 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
Found at i:77068920 original size:107 final size:107
Alignment explanation
Indices: 77068774--77069074 Score: 356
Period size: 107 Copynumber: 2.8 Consensus size: 107
77068764 CGATTTGTAA
* * * * * *
77068774 AATTATCGAAATACCACTATA-AGGTACAATTACTGAAATACCCCTATAAGGTAGAATTACCAAA
1 AATTACCG-AATACCCCTATAGA-GTAAAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAA
77068838 ATACCCTTGTAGGGTAGAATTACTAAAATACCCTAGTAAGGTAG
64 ATACCCTTGTAGGGTAGAATTACTAAAATACCCTAGTAAGGTAG
* *
77068882 AATTACCGAATACCCCTATAGAGTAGAATTACTGAAATACCCCCGTAGGGTAGAATTACCGAAAT
1 AATTACCGAATACCCCTATAGAGTAAAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAAT
* * * *
77068947 ACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAG
66 ACCCTTGTAGGGTAGAATTACTAAAATACCCTAGTAAGGTAG
** * * * * *
77068989 AATTACTAAAATACCCCTGTAGGGTAAAATTACT-ACAATACCCCTGTAGGGTGGAATTATCGAG
1 AATTAC-CGAATACCCCTATAGAGTAAAATTACTGA-AATACCCCTGTAGGGTAGAATTACCGAA
* *
77069053 ATA-CCTTGTGGGGTAAAATTAC
64 ATACCCTTGTAGGGTAGAATTAC
77069075 CATTTTGCCC
Statistics
Matches: 167, Mismatches: 23, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
107 110 0.66
108 57 0.34
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (107 bp):
AATTACCGAATACCCCTATAGAGTAAAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAAT
ACCCTTGTAGGGTAGAATTACTAAAATACCCTAGTAAGGTAG
Found at i:77069056 original size:27 final size:26
Alignment explanation
Indices: 77068774--77069074 Score: 275
Period size: 27 Copynumber: 11.2 Consensus size: 26
77068764 CGATTTGTAA
* * * *
77068774 AATTATCGAAATACCACTATAAGGTAC
1 AATTA-CGAAATACCCCTGTAGGGTAG
* *
77068801 AATTACTGAAATACCCCTATAAGGTAG
1 AATTAC-GAAATACCCCTGTAGGGTAG
* *
77068828 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTA-CGAAATACCCCTGTAGGGTAG
* *
77068855 AATTACTAAAATA-CCCTAGTAAGGTAG
1 AATTAC-GAAATACCCCT-GTAGGGTAG
* *
77068882 AATTACCG-AATACCCCTATAGAGTAG
1 AATTA-CGAAATACCCCTGTAGGGTAG
*
77068908 AATTACTGAAATACCCCCGTAGGGTAG
1 AATTAC-GAAATACCCCTGTAGGGTAG
77068935 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTA-CGAAATACCCCTGTAGGGTAG
*
77068962 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTAC-GAAATACCCCTGTAGGGTAG
* *
77068989 AATTACTAAAATACCCCTGTAGGGTAA
1 AATTAC-GAAATACCCCTGTAGGGTAG
* *
77069016 AATTACTACAATACCCCTGTAGGGTGG
1 AATTACGA-AATACCCCTGTAGGGTAG
* * * *
77069043 AATTATCGAGATA-CCTTGTGGGGTAA
1 AATTA-CGAAATACCCCTGTAGGGTAG
77069069 AATTAC
1 AATTAC
77069075 CATTTTGCCC
Statistics
Matches: 233, Mismatches: 29, Indels: 26
0.81 0.10 0.09
Matches are distributed among these distances:
25 2 0.01
26 37 0.16
27 189 0.81
28 5 0.02
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (26 bp):
AATTACGAAATACCCCTGTAGGGTAG
Found at i:77069467 original size:6 final size:6
Alignment explanation
Indices: 77069458--77069554 Score: 65
Period size: 6 Copynumber: 15.8 Consensus size: 6
77069448 ATTTTGTTAC
* * * *
77069458 CTGATA CTGATT CTGGTT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
77069507 CTGATT CTG-TCAC CTGATA CTGATT CTAATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
77069555 AATGTTTCTT
Statistics
Matches: 71, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
5 4 0.06
6 58 0.82
7 7 0.10
8 2 0.03
ACGTcount: A:0.20, C:0.19, G:0.16, T:0.45
Consensus pattern (6 bp):
CTGATT
Found at i:77069488 original size:31 final size:31
Alignment explanation
Indices: 77069435--77069545 Score: 150
Period size: 31 Copynumber: 3.5 Consensus size: 31
77069425 TTGCATTCGC
* *
77069435 ATTCTGATTTTTTATTTTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
*
77069467 ATTCTGGTTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* *
77069498 ATTCTGATTCTGATTCTGTCACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* *
77069529 ATTCTAATTCTGATTCT
1 ATTCTGATTTTGATTCT
77069546 AGTTCTGATA
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
31 66 0.92
32 6 0.08
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:77072401 original size:34 final size:34
Alignment explanation
Indices: 77072362--77072430 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
77072352 TGAGAGATAA
77072362 TCAGTTGTATGCCAAGTTCAACCAAAGTGAGTTC
1 TCAGTTGTATGCCAAGTTCAACCAAAGTGAGTTC
77072396 TCAGTTGTATGCCAAGTTCAACCAAAGTGAGTTC
1 TCAGTTGTATGCCAAGTTCAACCAAAGTGAGTTC
77072430 T
1 T
77072431 GGCTACGAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.30
Consensus pattern (34 bp):
TCAGTTGTATGCCAAGTTCAACCAAAGTGAGTTC
Found at i:77075947 original size:55 final size:54
Alignment explanation
Indices: 77075860--77076113 Score: 260
Period size: 55 Copynumber: 4.8 Consensus size: 54
77075850 ATTAGTGTTT
*
77075860 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * *
77075915 AAGGATATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
77075970 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* *
77076023 AAGGATACCATGTAAAACCATGTCAAGACATGG-AA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* ** *
77076071 AAGGATACCACGTAAGACCATGAGAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
77076114 GTACCCGTGT
Statistics
Matches: 169, Mismatches: 22, Indels: 22
0.79 0.10 0.10
Matches are distributed among these distances:
48 28 0.17
49 9 0.05
51 2 0.01
52 11 0.07
53 37 0.22
54 8 0.05
55 70 0.41
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:77076303 original size:16 final size:16
Alignment explanation
Indices: 77076282--77076312 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77076272 ATAAATTTGA
77076282 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
77076298 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
77076313 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:77084805 original size:29 final size:29
Alignment explanation
Indices: 77084770--77084843 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
77084760 GTTGTGAGAT
* *
77084770 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
77084799 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
77084828 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
77084844 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:77092578 original size:29 final size:29
Alignment explanation
Indices: 77092546--77092619 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
77092536 GTTGTGAGAT
* *
77092546 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
77092575 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
77092604 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
77092620 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:77099964 original size:29 final size:29
Alignment explanation
Indices: 77099929--77100002 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
77099919 GTTGTGAGAT
* *
77099929 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
77099958 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
77099987 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
77100003 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:77107105 original size:18 final size:19
Alignment explanation
Indices: 77107077--77107112 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
77107067 ATACCAATAC
77107077 CATATCAACATCTATCATA
1 CATATCAACATCTATCATA
*
77107096 CATA-CAACATTTATCAT
1 CATATCAACATCTATCAT
77107113 GCCATAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.42, C:0.25, G:0.00, T:0.33
Consensus pattern (19 bp):
CATATCAACATCTATCATA
Found at i:77108305 original size:42 final size:42
Alignment explanation
Indices: 77108189--77108352 Score: 211
Period size: 42 Copynumber: 3.9 Consensus size: 42
77108179 TACCATACCA
* *
77108189 ATGCCATATCCCAGATATGGTCTTACACGTAACCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * *
77108231 ATGCCAATAGCCCAGTTATGGTCTTACGCGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATATCG
** *
77108274 ATGCCATATCTTAGATATGGTCTTACACGAAATCTCATATAG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* ** *
77108316 ATGTCATATCTTAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCA
77108353 GAAACCCTAA
Statistics
Matches: 108, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
42 71 0.66
43 37 0.34
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:77108971 original size:13 final size:13
Alignment explanation
Indices: 77108953--77108979 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
77108943 TATCAAACTT
77108953 TCATAATCTATCA
1 TCATAATCTATCA
77108966 TCATAATCTATCA
1 TCATAATCTATCA
77108979 T
1 T
77108980 TAAACATCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (13 bp):
TCATAATCTATCA
Found at i:77114798 original size:21 final size:20
Alignment explanation
Indices: 77114770--77114808 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
77114760 GCATGTGTTT
*
77114770 TGAAGTTTCTTGATAGATTA
1 TGAAGTTTCTTAATAGATTA
*
77114790 TGAATGTTTGTTAATAGAT
1 TGAA-GTTTCTTAATAGAT
77114809 ATACAAGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.31, C:0.03, G:0.21, T:0.46
Consensus pattern (20 bp):
TGAAGTTTCTTAATAGATTA
Found at i:77126238 original size:46 final size:46
Alignment explanation
Indices: 77126185--77126360 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
77126175 TATTTGGGCA
77126185 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *** * * * *
77126231 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-GCG
*
77126278 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG-G
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AGCG
*
77126324 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77126361 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 17, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
45 1 0.01
46 70 0.65
47 36 0.33
48 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:77126340 original size:93 final size:93
Alignment explanation
Indices: 77126181--77126352 Score: 285
Period size: 93 Copynumber: 1.8 Consensus size: 93
77126171 GGGATATTTG
77126181 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
*
77126246 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
77126274 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG-G-CTCGAGCTCGTTG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AGCGTC-CGAACTCGTTG
77126337 AGTTGAGTCCGAGTTC
64 AGTTGAGTCCGAGTTC
77126353 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
92 1 0.01
93 71 0.96
94 2 0.03
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:77138341 original size:40 final size:40
Alignment explanation
Indices: 77138297--77138399 Score: 154
Period size: 40 Copynumber: 2.5 Consensus size: 40
77138287 CGACAATTCA
* *
77138297 GCTATGTATGGCACTTAATGTGCGACTT-GAGATAGCTTCG
1 GCTATGTATGGCACTTAGTGTGC-AATTCGAGATAGCTTCG
77138337 GCTATGTATGGCACTTAGTGTGCAATTCGAGATAGCTTCG
1 GCTATGTATGGCACTTAGTGTGCAATTCGAGATAGCTTCG
*
77138377 GCTATGTATTAGCACTTAGTGTG
1 GCTATGTA-TGGCACTTAGTGTG
77138400 TTAGAATTCG
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
39 3 0.05
40 42 0.72
41 13 0.22
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.34
Consensus pattern (40 bp):
GCTATGTATGGCACTTAGTGTGCAATTCGAGATAGCTTCG
Found at i:77141202 original size:12 final size:12
Alignment explanation
Indices: 77141185--77141210 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
77141175 AATATCACCA
77141185 AAATAAATGTCC
1 AAATAAATGTCC
77141197 AAATAAATGTCC
1 AAATAAATGTCC
77141209 AA
1 AA
77141211 TGTCCATTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.15, G:0.08, T:0.23
Consensus pattern (12 bp):
AAATAAATGTCC
Found at i:77150982 original size:135 final size:136
Alignment explanation
Indices: 77150735--77151010 Score: 342
Period size: 135 Copynumber: 2.0 Consensus size: 136
77150725 GCGATCGCTC
* * * **
77150735 GTGGGGTAAACTGAGCCCACAAAACGTGGGCGTACGTCGAGGAAGGCCACCATGTGCGATCTCAT
1 GTGGGGTAAACTGAACCCACAAAACGTAGGCATACGTCGAGGAAGGCCACCATGAACGATCTCAT
* * *
77150800 GGGCCTAGGCTGGAATGGGTCGTATGGGCCCAATAGGCCTGTGGGCCCAC-TG-GGTAAACTTCA
66 GGGCCTAGGCTGGAATGGGTCATATGGGCCCAATAGGCCGGTCGGCCCACGTGAGG-AAACTTCA
77150863 CTGTTAA
130 CTGTTAA
* * * *
77150870 GTGGGGTAAATTGAACCCACGAAATGTAGGCATATGTCGAGGAAGGCCACCATGAACGATCTCAT
1 GTGGGGTAAACTGAACCCACAAAACGTAGGCATACGTCGAGGAAGGCCACCATGAACGATCTCAT
* * * * * *
77150935 GGGCCT-GGGTAGTAATGGGTCATATGGGCCCAATGGGTCGGTCGGCCCGCGTGAGGAAGCTTCA
66 GGGCCTAGGCT-GGAATGGGTCATATGGGCCCAATAGGCCGGTCGGCCCACGTGAGGAAACTTCA
*
77150999 GTGTTAA
130 CTGTTAA
77151006 GTGGG
1 GTGGG
77151011 ACGTAGATAG
Statistics
Matches: 119, Mismatches: 19, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
134 3 0.03
135 94 0.79
136 20 0.17
137 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.34, T:0.21
Consensus pattern (136 bp):
GTGGGGTAAACTGAACCCACAAAACGTAGGCATACGTCGAGGAAGGCCACCATGAACGATCTCAT
GGGCCTAGGCTGGAATGGGTCATATGGGCCCAATAGGCCGGTCGGCCCACGTGAGGAAACTTCAC
TGTTAA
Found at i:77151089 original size:19 final size:19
Alignment explanation
Indices: 77151065--77151101 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
77151055 TGGGCCACGT
77151065 TGGGCCTAGATGGG-TCGTC
1 TGGGCCTA-ATGGGCTCGTC
77151084 TGGGCCTAATGGGCTCGT
1 TGGGCCTAATGGGCTCGT
77151102 GGGCCTCACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.11, C:0.22, G:0.41, T:0.27
Consensus pattern (19 bp):
TGGGCCTAATGGGCTCGTC
Found at i:77153371 original size:20 final size:20
Alignment explanation
Indices: 77153330--77153371 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
77153320 TTCAAGACTG
**
77153330 CCTTTGGTGTCGTGACACAA
1 CCTTTGGTGTCGCAACACAA
77153350 CCTTTGGATGTCGCAACA-AA
1 CCTTTGG-TGTCGCAACACAA
77153370 CC
1 CC
77153372 CCTGAAGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (20 bp):
CCTTTGGTGTCGCAACACAA
Found at i:77153432 original size:21 final size:21
Alignment explanation
Indices: 77153408--77153461 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
77153398 ACTCCCTTTG
*
77153408 ATGTCGCGACATAAGACTACT
1 ATGTCGTGACATAAGACTACT
77153429 ATGTCGTGACATAAGACTACT
1 ATGTCGTGACATAAGACTACT
77153450 ATGTCGTGACAT
1 ATGTCGTGACAT
77153462 CGACTCTGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (21 bp):
ATGTCGTGACATAAGACTACT
Found at i:77168709 original size:42 final size:42
Alignment explanation
Indices: 77168662--77168768 Score: 130
Period size: 40 Copynumber: 2.6 Consensus size: 42
77168652 ACACTCAAAT
* * **
77168662 TCTCGCACATTAAGTGCCAATACATAGCCGAAGCTAT-TTTAA
1 TCTCGCACACTAAGTGCC-ATACATAGCCAAAGCTATCTCGAA
* *
77168704 TCTCGCACACTAAGTGTCGTACATAGCCAAAGCTATCTCGAA
1 TCTCGCACACTAAGTGCCATACATAGCCAAAGCTATCTCGAA
77168746 --TCGCACACTAAGTGCCATACATA
1 TCTCGCACACTAAGTGCCATACATA
77168769 ATCGAATTGT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
40 21 0.38
41 16 0.29
42 19 0.34
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (42 bp):
TCTCGCACACTAAGTGCCATACATAGCCAAAGCTATCTCGAA
Found at i:77174061 original size:39 final size:39
Alignment explanation
Indices: 77174017--77174257 Score: 383
Period size: 39 Copynumber: 6.2 Consensus size: 39
77174007 GCTCTGGTGA
*
77174017 GCTTCAGTCAGCCTCCGGGCTTCCGTTTAGCACTTCTGT
1 GCTTCAGTCAGCCTTCGGGCTTCCGTTTAGCACTTCTGT
*
77174056 GCTTCAGTCAGCCTTTGGGCTTCCGTTTAGCACTTCTGT
1 GCTTCAGTCAGCCTTCGGGCTTCCGTTTAGCACTTCTGT
*
77174095 GCTTCAGTCAGCCTTCGGGCTTCCGTTTAGCACTTCAGT
1 GCTTCAGTCAGCCTTCGGGCTTCCGTTTAGCACTTCTGT
*
77174134 GCTTCAGTCAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTCAGCCTTCGGGCTTCCGTTTAGCACTTCTGT
* * *
77174173 GCTTCAGTTAGCCTTTGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTCAGCCTTCGGGCTTCCGTTTAGCACTTCTGT
* * * *
77174212 GCTTCAATTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTCAGCCTTCGGGCTTCCGTTTAGCACTTCTGT
77174251 GCTTCAG
1 GCTTCAG
77174258 CTAAACTTCG
Statistics
Matches: 189, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 189 1.00
ACGTcount: A:0.12, C:0.29, G:0.23, T:0.36
Consensus pattern (39 bp):
GCTTCAGTCAGCCTTCGGGCTTCCGTTTAGCACTTCTGT
Found at i:77183162 original size:21 final size:20
Alignment explanation
Indices: 77183128--77183166 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
77183118 AAGCTTGTAT
*
77183128 ATCTATTAACAAACATTCATA
1 ATCTATCAACAAAC-TTCATA
*
77183149 ATCTATCAAGAAACTTCA
1 ATCTATCAACAAACTTCA
77183167 AAACACATGC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.46, C:0.21, G:0.03, T:0.31
Consensus pattern (20 bp):
ATCTATCAACAAACTTCATA
Found at i:77185192 original size:51 final size:49
Alignment explanation
Indices: 77185081--77185325 Score: 265
Period size: 49 Copynumber: 4.9 Consensus size: 49
77185071 TCTATTGTGA
* *
77185081 GGTCACGTGTATAGTACTAAATGCAGGCTACTACGTGTACCAGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *** *
77185130 GGTCGCATGTGTAGTACTAAGTGCAGACTACTATACGTACCCGATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * ****
77185180 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGCCA
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AATT
* *
77185231 GGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
77185280 GGTCGCATGTGTAGTTCTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
77185326 GCTTTGGCTA
Statistics
Matches: 156, Mismatches: 37, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
49 77 0.49
50 43 0.28
51 36 0.23
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:77185217 original size:28 final size:28
Alignment explanation
Indices: 77185185--77185268 Score: 76
Period size: 28 Copynumber: 3.2 Consensus size: 28
77185175 AACTTCGATC
77185185 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
*
77185213 ACGTGTATCAG-A-T--G-GCCAGG-T-C-
1 ACGTGTGT-AGTACTAAGTG-CAGGCTACT
*
77185235 ACGTGTGTAGTACTAAGTGCAAGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
77185263 ACGTGT
1 ACGTGT
77185269 ACCGGATAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 20
0.65 0.05 0.30
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 2 0.05
25 9 0.21
26 2 0.05
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:77185324 original size:99 final size:101
Alignment explanation
Indices: 77185083--77185324 Score: 258
Period size: 100 Copynumber: 2.4 Consensus size: 101
77185073 TATTGTGAGG
* * * * **** * *
77185083 TCACGTGTATAGTACTAAATGCAGGCTACTACGTGTACCAGAT-AATTGGTCGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATGGCCAGGTCACGTGTGTAGTAC
*
77185147 TAAGTGCAGACTACTATACGTACCCGATAACTTCGA
66 TAAGTGCAGACTACTACACGTACCCGATAACTTCGA
* * *
77185183 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGCCAGGTCACGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATGGCCAGGTCACGTGTGTAGTAC
** * *
77185248 TAAGTGCA-AGCTACTACGTGTACCGGATAA-TT-GG
66 TAAGTGCAGA-CTACTACACGTACCCGATAACTTCGA
* * *
77185282 TCGCATGTGTAGTTCTAAGTGCAGGCTACTATGCGTACCAGAT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAT
77185325 AGCTTTGGCT
Statistics
Matches: 120, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
99 38 0.32
100 43 0.36
101 39 0.32
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (101 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATGGCCAGGTCACGTGTGTAGTAC
TAAGTGCAGACTACTACACGTACCCGATAACTTCGA
Found at i:77189377 original size:43 final size:43
Alignment explanation
Indices: 77189282--77189402 Score: 127
Period size: 43 Copynumber: 2.8 Consensus size: 43
77189272 ATCGAGATGT
* * * *
77189282 GATTACATGTAAGATCATGTCTAAGACATTGGCATTGTATTGA
1 GATTACGTGTAAGACCATGTCTGAGACATTGGCATTGTAATGA
* *
77189325 GATTACGTGTAAGACCATGTCTGCGACATTGGCATTGTTAAT-C
1 GATTACGTGTAAGACCATGTCTGAGACATTGGCATTG-TAATGA
* * * * *
77189368 GATTTCGTGTAAGACCTTGTCCGGGACAGTGGCAT
1 GATTACGTGTAAGACCATGTCTGAGACATTGGCAT
77189403 CGATATGTAA
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
43 63 0.95
44 3 0.05
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGAGACATTGGCATTGTAATGA
Found at i:77189757 original size:57 final size:57
Alignment explanation
Indices: 77189687--77189796 Score: 211
Period size: 57 Copynumber: 1.9 Consensus size: 57
77189677 TTGATATTTA
*
77189687 AATGTCATGTGATGACTTTATTTGTATATGGCCTACTAAGCTTTTAAAGCTTAGTTT
1 AATGTCATCTGATGACTTTATTTGTATATGGCCTACTAAGCTTTTAAAGCTTAGTTT
77189744 AATGTCATCTGATGACTTTATTTGTATATGGCCTACTAAGCTTTTAAAGCTTA
1 AATGTCATCTGATGACTTTATTTGTATATGGCCTACTAAGCTTTTAAAGCTTA
77189797 CTTTGTGTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.43
Consensus pattern (57 bp):
AATGTCATCTGATGACTTTATTTGTATATGGCCTACTAAGCTTTTAAAGCTTAGTTT
Found at i:77190369 original size:2 final size:2
Alignment explanation
Indices: 77190362--77190402 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
77190352 TTTGACTGCC
77190362 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
77190403 GTTTAAAATG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:77190812 original size:42 final size:42
Alignment explanation
Indices: 77190746--77190839 Score: 143
Period size: 42 Copynumber: 2.2 Consensus size: 42
77190736 GCCCTATTTT
*
77190746 CACACGGCCTATGACACAGACATGTCTGGTGACCGTATGAGG
1 CACACGGCCTATGACACAGACATGTCTGGTGACCGTATGAAG
** * *
77190788 CACACGGCCTATGACATGGGCATGTCTGGTGACCGTGTGAAG
1 CACACGGCCTATGACACAGACATGTCTGGTGACCGTATGAAG
77190830 CACACGGCCT
1 CACACGGCCT
77190840 TTTTACATTG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.23, C:0.28, G:0.30, T:0.19
Consensus pattern (42 bp):
CACACGGCCTATGACACAGACATGTCTGGTGACCGTATGAAG
Found at i:77192514 original size:29 final size:28
Alignment explanation
Indices: 77192452--77192550 Score: 139
Period size: 28 Copynumber: 3.5 Consensus size: 28
77192442 ACAGTAAGTC
*
77192452 CGCACACTTAGTGCT-TAATATTCAAACT
1 CGCACACTTAGTGCTATCA-ATTCAAACT
*
77192480 CTCACACTTAGTGCTATGCAATTCAAACT
1 CGCACACTTAGTGCTAT-CAATTCAAACT
77192509 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTAT-CAATTCAAACT
77192537 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77192551 CAATCTCATT
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
28 33 0.51
29 31 0.48
30 1 0.02
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATCAATTCAAACT
Found at i:77200181 original size:27 final size:28
Alignment explanation
Indices: 77200113--77200209 Score: 130
Period size: 28 Copynumber: 3.5 Consensus size: 28
77200103 ACAGTAAGTC
*
77200113 CGCACACTTAGTGCT-TAATATTCAAACT
1 CGCACACTTAGTGCTATCA-ATTCAAACT
77200141 CGCACACTTAGTGCTATGCAATTCAAAC-
1 CGCACACTTAGTGCTAT-CAATTCAAACT
77200169 C-CACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTAT-CAATTCAAACT
77200196 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77200210 CAATCTCATT
Statistics
Matches: 63, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
26 4 0.06
27 21 0.33
28 28 0.44
29 9 0.14
30 1 0.02
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATCAATTCAAACT
Found at i:77204429 original size:25 final size:25
Alignment explanation
Indices: 77204401--77204469 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
77204391 ACCGATTCTT
*
77204401 AGCTCG-AGAGAGCTTACTGATATTC
1 AGCTCGCA-AGAGCTTACCGATATTC
* *
77204426 AGCTCGCATGAGCTTACCGATATTT
1 AGCTCGCAAGAGCTTACCGATATTC
* *
77204451 AGCTCGTATGAGCTTACCG
1 AGCTCGCAAGAGCTTACCG
77204470 TTTACAGCTC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 38 0.97
26 1 0.03
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (25 bp):
AGCTCGCAAGAGCTTACCGATATTC
Found at i:77207712 original size:40 final size:40
Alignment explanation
Indices: 77207668--77207853 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
77207658 GCTACTCGTT
* * *
77207668 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
77207708 CAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
77207748 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * *
77207788 CAATTGCCTTC-GGATCTTAGTCCGGATTTAGTAACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
77207829 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77207854 CATCATTCGA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 12 0.09
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:77210670 original size:28 final size:28
Alignment explanation
Indices: 77210633--77210739 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
77210623 GCAATCAAAT
*
77210633 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
77210661 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
77210689 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * *
77210717 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATAT
77210740 CGAATGATTC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:77215734 original size:20 final size:18
Alignment explanation
Indices: 77215694--77215737 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
77215684 TGTGGGTAGG
*
77215694 CCGTGTGGTCTCACACGC
1 CCGTGTGGTCTCACACAC
*
77215712 CCGTGTGGCTCTAGACACAC
1 CCGTGTGG-TCT-CACACAC
77215732 CCGTGT
1 CCGTGT
77215738 CCTCAGCCCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 8 0.36
19 3 0.14
20 11 0.50
ACGTcount: A:0.14, C:0.36, G:0.27, T:0.23
Consensus pattern (18 bp):
CCGTGTGGTCTCACACAC
Found at i:77218322 original size:40 final size:39
Alignment explanation
Indices: 77218262--77218490 Score: 302
Period size: 40 Copynumber: 5.8 Consensus size: 39
77218252 TGGATGATAA
*
77218262 CGAAGGCATTTGTGCGAGTGACTA-ATTCCGGGCTAAGACC
1 CGAAGGCATTTGTGCGAGT-ACTATA-TCCGGGCTAAGTCC
* *
77218302 CGAAGGCATTTGTGCTAGTGACTA-ATTCCAGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGT-ACTATA-TCCGGGCTAAGTCC
* * *
77218342 TGAAGGCATTTGTGTGAGTTACTATATCTGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCC
*
77218382 CGAAGGCATTTGTGCGA-TACTATATCCGAGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCC
77218420 CGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCC
*
77218460 CGAAGGCATTTGAGCGAGTAGCTATATCCGG
1 CGAAGGCATTTGTGCGAGTA-CTATATCCGG
77218491 TTACATCCCG
Statistics
Matches: 170, Mismatches: 14, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
38 36 0.21
39 2 0.01
40 130 0.76
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
CGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCC
Found at i:77218443 original size:78 final size:79
Alignment explanation
Indices: 77218262--77218489 Score: 304
Period size: 78 Copynumber: 2.9 Consensus size: 79
77218252 TGGATGATAA
* *
77218262 CGAAGGCATTTGTGCGAGTGACTA-ATTCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTA
1 CGAAGGCATTTGTGCGAGT-ACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTA
77218326 -ATTCC-AGGCTAAGTCC
63 TA-TCCGAGGCTAAGTCC
* * *
77218342 TGAAGGCATTTGTGTGAGTTACTATATCTGGGCTAAGTCCCGAAGGCATTTGTGCGA-TACTATA
1 CGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATA
77218406 TCCGA-GCTAAGTCC
65 TCCGAGGCTAAGTCC
*
77218420 CGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTAT
1 CGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTAT
77218485 ATCCG
64 ATCCG
77218490 GTTACATCCC
Statistics
Matches: 132, Mismatches: 10, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
78 68 0.52
79 5 0.04
80 57 0.43
81 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
CGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
CCGAGGCTAAGTCC
Found at i:77218485 original size:118 final size:120
Alignment explanation
Indices: 77218262--77218487 Score: 311
Period size: 118 Copynumber: 1.9 Consensus size: 120
77218252 TGGATGATAA
* *
77218262 CGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTAA
1 CGAAGGCATTTGTGCGAGTGACTAATTCCGAGCTAAGACCCGAAGGCATTTGTGCGAGTGACTAA
* * *
77218327 TTCCAGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCTGGGCTAAGTCC
66 TTCCAGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATATCTGGGCTAAGTCC
*
77218382 CGAAGGCATTTGTGCGA-T-ACT-ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGCT-ACT
1 CGAAGGCATTTGTGCGAGTGACTAAT-TCCGAGCTAAGACCCGAAGGCATTTGTGCGAG-TGACT
*
77218443 -ATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATC
64 AAT-TCCAGGCTAAGTCCCGAAGGCATTTGAGCGAGTTA-CTATATC
77218488 CGGTTACATC
Statistics
Matches: 95, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
117 6 0.06
118 70 0.74
119 2 0.02
120 17 0.18
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (120 bp):
CGAAGGCATTTGTGCGAGTGACTAATTCCGAGCTAAGACCCGAAGGCATTTGTGCGAGTGACTAA
TTCCAGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATATCTGGGCTAAGTCC
Found at i:77220891 original size:15 final size:16
Alignment explanation
Indices: 77220873--77220902 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77220863 AACTGTTTTA
77220873 TTACA-AATTTCACTC
1 TTACATAATTTCACTC
77220888 TTACATAATTTCACT
1 TTACATAATTTCACT
77220903 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (16 bp):
TTACATAATTTCACTC
Found at i:77221232 original size:50 final size:50
Alignment explanation
Indices: 77221114--77221395 Score: 237
Period size: 50 Copynumber: 5.6 Consensus size: 50
77221104 CTGGCACGCA
* * * * *
77221114 TAGTATCCTGCACTTAGTACTACACATGTGACC-AACAATCCGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACG
* *
77221163 TAGTAGTCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACG
* * *** * * *
77221213 TAGTAGCCTGCACTTAGTACTACACACGTGATC-AAAGTTGTCAAGTAC-GG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCT-GA-TACACG
* * * * * *
77221263 ATAGTAGTCTGAACTTAGTACTACATATGCGACCTAACTATCTGGTACACG
1 -TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACG
* * * * * * *
77221314 TAGTAGCCTACACTTAGTACTACATATGTGACCTAAAACCATTTTAAATACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACCATCTGATACACG
*
77221366 TAGTAGCCTGCACATAGTACTACACATGTG
1 TAGTAGCCTGCACTTAGTACTACACATGTG
77221396 TTCTCACAAC
Statistics
Matches: 183, Mismatches: 42, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
49 34 0.19
50 78 0.43
51 31 0.17
52 40 0.22
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACG
Found at i:77222078 original size:16 final size:16
Alignment explanation
Indices: 77222039--77222072 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
77222029 TTTTTGCCCC
77222039 TAAACTTTGTCAAAAA
1 TAAACTTTGTCAAAAA
77222055 TAAACTTTGTCAAAAA
1 TAAACTTTGTCAAAAA
77222071 TA
1 TA
77222073 CTCTTTTTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.32
Consensus pattern (16 bp):
TAAACTTTGTCAAAAA
Found at i:77239333 original size:21 final size:21
Alignment explanation
Indices: 77239309--77239349 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
77239299 TCTCTTCTAA
77239309 GTTTTAGTTCAACCCTTATGG
1 GTTTTAGTTCAACCCTTATGG
* * *
77239330 GTTTTCGTTCAGCTCTTATG
1 GTTTTAGTTCAACCCTTATG
77239350 AGCTTTCGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.20, G:0.20, T:0.46
Consensus pattern (21 bp):
GTTTTAGTTCAACCCTTATGG
Found at i:77243308 original size:40 final size:40
Alignment explanation
Indices: 77243158--77243343 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
77243148 TCGAATGATG
* * *
77243158 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
77243198 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77243238 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
77243278 TCCGGGTTAAGTCCCGAAGGCATTTCTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
77243319 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77243344 AACAAGTAGC
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:77243361 original size:80 final size:80
Alignment explanation
Indices: 77243158--77243376 Score: 229
Period size: 80 Copynumber: 2.8 Consensus size: 80
77243148 TCGAATGATG
**
77243158 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTAG-CTATATCCGGGTTAAGATCCGAAGGCAT
* *
77243221 TTGTGCGAGTTACTAAA
64 TTCTGCGAGCTACTAAA
* * *
77243238 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAG-TAGCTATATCCGGGTTAAGAT-CCGAAGGCA
77243300 TTTCTGCGAGCTACTATAA
63 TTTCTGCGAGCTACTA-AA
* **
77243319 -CCGGGCTATGTCCCGAAGGCATTTGAACAAGTAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGGTTAAGA-TCCGAAGG
77243377 TACGTGATTC
Statistics
Matches: 116, Mismatches: 13, Indels: 21
0.77 0.09 0.14
Matches are distributed among these distances:
79 17 0.15
80 88 0.76
81 11 0.09
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGGTTAAGATCCGAAGGCATTT
CTGCGAGCTACTAAA
Found at i:77244840 original size:30 final size:30
Alignment explanation
Indices: 77244805--77244871 Score: 125
Period size: 30 Copynumber: 2.2 Consensus size: 30
77244795 GTGCCAGCCT
*
77244805 GTGTGTCACACACGGCCAGTAGACACGCCC
1 GTGTGTCACACACAGCCAGTAGACACGCCC
77244835 GTGTGTCACACACAGCCAGTAGACACGCCC
1 GTGTGTCACACACAGCCAGTAGACACGCCC
77244865 GTGTGTC
1 GTGTGTC
77244872 TAAGCTGTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.22, C:0.34, G:0.27, T:0.16
Consensus pattern (30 bp):
GTGTGTCACACACAGCCAGTAGACACGCCC
Found at i:77245239 original size:24 final size:24
Alignment explanation
Indices: 77245205--77245250 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
77245195 ATTCATGCCA
77245205 CAAAATATACCAATTCATCATCAT
1 CAAAATATACCAATTCATCATCAT
*
77245229 CAAAATGTACCAATTCATCATC
1 CAAAATATACCAATTCATCATC
77245251 CCTATACCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.43, C:0.26, G:0.02, T:0.28
Consensus pattern (24 bp):
CAAAATATACCAATTCATCATCAT
Found at i:77248011 original size:21 final size:20
Alignment explanation
Indices: 77247977--77248015 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
77247967 AAACTTGTAT
77247977 ATCTATCAACAAACATTCATA
1 ATCTATCAACAAAC-TTCATA
* *
77247998 ATCTATTAAGAAACTTCA
1 ATCTATCAACAAACTTCA
77248016 AATTACATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.46, C:0.21, G:0.03, T:0.31
Consensus pattern (20 bp):
ATCTATCAACAAACTTCATA
Found at i:77251538 original size:40 final size:39
Alignment explanation
Indices: 77251456--77251679 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 39
77251446 TCGAATGATG
* * * *
77251456 TCCGGGCTAAGTCCCAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
77251495 TCCGGACTAAGATCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
77251535 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
77251575 TCCGGGCTACGCCCGAAGGCATTGGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
77251614 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
77251655 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
77251680 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
39 43 0.27
40 108 0.68
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:77251591 original size:79 final size:80
Alignment explanation
Indices: 77251456--77251679 Score: 237
Period size: 79 Copynumber: 2.8 Consensus size: 80
77251446 TCGAATGATG
* * * * *
77251456 TCCGGGCTAAGTCCC-AAGGC-TTTGTGCTAAG-TGACTATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGCT-ACTATAACCGGGCTACG-TCCCGAAGGCA
*
77251517 TTTGTGTGAGTTACTAAA
63 TTTGTGCGAGTTACTAAA
* *
77251535 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTACG-CCCGAAGGCAT
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGCTACTATA-ACCGGGCTACGTCCCGAAGGCAT
* *
77251597 TGGTGCGAGTTATTAAA
64 TTGTGCGAGTTACTAAA
** *
77251614 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTACGTCCCGAAGGCATTT
77251679 G
66 G
77251680 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 13, Indels: 17
0.80 0.08 0.11
Matches are distributed among these distances:
78 1 0.01
79 79 0.64
80 35 0.28
81 8 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTACGTCCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:77251701 original size:79 final size:79
Alignment explanation
Indices: 77251524--77251702 Score: 204
Period size: 79 Copynumber: 2.3 Consensus size: 79
77251514 GCATTTGTGT
** * *
77251524 GAGTTACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTACGCC
1 GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGCTACTAATACCGGGCTACGCC
**
77251588 CGAAGGCATTGGTGC
65 CGAAGGCATTGGAAC
* *
77251603 GAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACT-ATAACCGGGCTATGTC
1 GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAT-ACCGGGCTACG-C
*
77251667 CCGAAGGCATTTGAAC
64 CCGAAGGCATTGGAAC
*
77251683 GAG-TAGCTATATCC-GGTTAA
1 GAGTTA-CTAAATCCGGGTTAA
77251703 ATTCTGAAGG
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
78 3 0.04
79 59 0.69
80 23 0.27
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATACCGGGCTACGCCC
GAAGGCATTGGAAC
Found at i:77262326 original size:29 final size:29
Alignment explanation
Indices: 77262292--77262367 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
77262282 TACTCGATTT
* * *
77262292 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
77262321 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
77262350 CGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
77262368 TATTTCCGGC
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.25, C:0.34, G:0.18, T:0.22
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:77262383 original size:29 final size:29
Alignment explanation
Indices: 77262351--77262423 Score: 137
Period size: 29 Copynumber: 2.5 Consensus size: 29
77262341 CTTCGAGCTC
*
77262351 GCACACTTAGTGCCATATATTTCCGGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
77262380 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
77262409 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
77262424 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:77265874 original size:40 final size:40
Alignment explanation
Indices: 77265750--77265875 Score: 155
Period size: 40 Copynumber: 3.1 Consensus size: 40
77265740 GCTGGAAATT
* * * *
77265750 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTTA
* * ** *
77265790 CATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTTA
77265830 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGGTTA
77265870 TATCCG
1 TATCCG
77265876 TTATATTCCG
Statistics
Matches: 71, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 70 0.99
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTTA
Found at i:77267394 original size:19 final size:20
Alignment explanation
Indices: 77267370--77267408 Score: 62
Period size: 19 Copynumber: 1.9 Consensus size: 20
77267360 GATAGAAAAG
77267370 TTGAGAAATT-TGAGGCTAC
1 TTGAGAAATTATGAGGCTAC
77267389 TTGAGAAATTGATGAGGCTA
1 TTGAGAAATT-ATGAGGCTA
77267409 GTGAAAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.56
21 8 0.44
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (20 bp):
TTGAGAAATTATGAGGCTAC
Found at i:77270650 original size:40 final size:40
Alignment explanation
Indices: 77270458--77270643 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
77270448 TCGAATGATG
* * *
77270458 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
77270498 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77270538 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77270578 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
77270619 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77270644 AACGAGTAGC
Statistics
Matches: 134, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 1 0.01
40 123 0.92
41 10 0.07
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:77270650 original size:80 final size:80
Alignment explanation
Indices: 77270458--77270676 Score: 270
Period size: 80 Copynumber: 2.8 Consensus size: 80
77270448 TCGAATGATG
* * **
77270458 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
77270522 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* *
77270538 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCATT
77270602 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTA-AA
* **
77270619 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
77270677 TACGTGATTC
Statistics
Matches: 122, Mismatches: 11, Indels: 13
0.84 0.08 0.09
Matches are distributed among these distances:
79 16 0.13
80 97 0.80
81 9 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:77278748 original size:80 final size:80
Alignment explanation
Indices: 77278596--77278764 Score: 195
Period size: 80 Copynumber: 2.1 Consensus size: 80
77278586 TCGAATGATG
*
77278596 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
**
77278661 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * *
77278676 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAAT-CGGGCTATG-TCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAT-ATCCGGACTAAGAT-CCGAAGGCA
*
77278738 TTTGAACGAGTAGCTATA
63 TTTGAACGAGTAGCTAAA
77278756 TCC-GGTTAA
1 TCCGGGTTAA
77278765 ACTCCGAAGG
Statistics
Matches: 77, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
79 9 0.12
80 59 0.77
81 9 0.12
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
GAACGAGTAGCTAAA
Found at i:77278755 original size:40 final size:41
Alignment explanation
Indices: 77278596--77278741 Score: 194
Period size: 40 Copynumber: 3.6 Consensus size: 41
77278586 TCGAATGATG
* *
77278596 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
*
77278636 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
77278676 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
77278717 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77278742 AACGAGTAGC
Statistics
Matches: 94, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
39 1 0.01
40 82 0.87
41 11 0.12
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:77282293 original size:16 final size:16
Alignment explanation
Indices: 77282268--77282298 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77282258 TTTTTTACTC
*
77282268 TATTTTTTGTTGTTCA
1 TATTTGTTGTTGTTCA
77282284 TATTTGTTGTTGTTC
1 TATTTGTTGTTGTTC
77282299 TCTATGTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.06, G:0.16, T:0.68
Consensus pattern (16 bp):
TATTTGTTGTTGTTCA
Found at i:77285669 original size:6 final size:6
Alignment explanation
Indices: 77285658--77285683 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
77285648 AATTGCTTAA
77285658 ATAATT ATAATT ATAATT ATAATT AT
1 ATAATT ATAATT ATAATT ATAATT AT
77285684 TCAATGGAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
ATAATT
Found at i:77291334 original size:18 final size:18
Alignment explanation
Indices: 77291310--77291350 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
77291300 TATCTCATGT
*
77291310 ATCATATTATCCATGTAA
1 ATCATATAATCCATGTAA
* *
77291328 TTCATATAATTCATGTAA
1 ATCATATAATCCATGTAA
77291346 ATCAT
1 ATCAT
77291351 GTAACTTATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.39, C:0.15, G:0.05, T:0.41
Consensus pattern (18 bp):
ATCATATAATCCATGTAA
Found at i:77291587 original size:22 final size:23
Alignment explanation
Indices: 77291551--77291631 Score: 94
Period size: 23 Copynumber: 3.6 Consensus size: 23
77291541 CTGAGCTAAT
**
77291551 AAACGGTAAATTCCGAAGAGCTG
1 AAACGGTAAGCTCCGAAGAGCTG
* * *
77291574 -AACGGTAAGCTCCGTATAGTTG
1 AAACGGTAAGCTCCGAAGAGCTG
77291596 AAACGGTAAGC-CCTGAAGAGCTG
1 AAACGGTAAGCTCC-GAAGAGCTG
77291619 AAACGGTAAGCTC
1 AAACGGTAAGCTC
77291632 ATATGAACTA
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
22 19 0.40
23 27 0.57
24 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.19
Consensus pattern (23 bp):
AAACGGTAAGCTCCGAAGAGCTG
Found at i:77292987 original size:18 final size:18
Alignment explanation
Indices: 77292964--77292999 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
77292954 GCTAATGACA
77292964 TGTCATTAGAGGTTATGT
1 TGTCATTAGAGGTTATGT
77292982 TGTCATTAGAGGTTATGT
1 TGTCATTAGAGGTTATGT
77293000 GATTTGGGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.06, G:0.28, T:0.44
Consensus pattern (18 bp):
TGTCATTAGAGGTTATGT
Found at i:77297458 original size:40 final size:39
Alignment explanation
Indices: 77297293--77297460 Score: 133
Period size: 40 Copynumber: 4.2 Consensus size: 39
77297283 AAATTGAATG
* * *
77297293 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
77297333 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
77297373 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
77297413 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
77297452 GATATCCGG
1 -ATATCCGG
77297461 TTAAGTCCCG
Statistics
Matches: 100, Mismatches: 23, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 91 0.91
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:77305584 original size:40 final size:39
Alignment explanation
Indices: 77305419--77305602 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
77305409 AAATTGAATG
* * *
77305419 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
77305459 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
77305499 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
77305539 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
77305578 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
77305603 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:77305627 original size:80 final size:81
Alignment explanation
Indices: 77305459--77305647 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
77305449 GCTGGAAATT
* * * *
77305459 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
77305524 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
77305540 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
77305603 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
77305619 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
77305648 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:77309601 original size:18 final size:17
Alignment explanation
Indices: 77309573--77309607 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
77309563 GTATATTATA
77309573 TATTTATAATTAATAAT
1 TATTTATAATTAATAAT
77309590 TATTTGATAATTAATAAT
1 TATTT-ATAATTAATAAT
77309608 AAATTTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (17 bp):
TATTTATAATTAATAAT
Found at i:77310338 original size:12 final size:12
Alignment explanation
Indices: 77310321--77310346 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
77310311 ATTTTTTTTA
77310321 TATATCTTAATT
1 TATATCTTAATT
77310333 TATATCTTAATT
1 TATATCTTAATT
77310345 TA
1 TA
77310347 AAACATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.58
Consensus pattern (12 bp):
TATATCTTAATT
Found at i:77311741 original size:43 final size:43
Alignment explanation
Indices: 77311689--77311786 Score: 115
Period size: 43 Copynumber: 2.3 Consensus size: 43
77311679 CATTATAGAA
* **
77311689 CATGATCTTTAGCGACGCTTTTCTTAAAAACACCACTAAAAGT
1 CATGTTCTTTAGCGACGCTTTTAGTAAAAACACCACTAAAAGT
** * * * *
77311732 CATGTTCTTTAGCGGTGTTTTTAGTAAAAGCGCCGCTAAAAGT
1 CATGTTCTTTAGCGACGCTTTTAGTAAAAACACCACTAAAAGT
77311775 CATGTTCTTTAG
1 CATGTTCTTTAG
77311787 TGGCATTTGT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (43 bp):
CATGTTCTTTAGCGACGCTTTTAGTAAAAACACCACTAAAAGT
Found at i:77312303 original size:85 final size:86
Alignment explanation
Indices: 77312159--77312340 Score: 240
Period size: 85 Copynumber: 2.1 Consensus size: 86
77312149 TTATTTAAAA
* * * *
77312159 AAACGCCGCTAAAGACCATGAACTTTAGTGGAGCTTTTTTCGCAAACGCCACTAAAGACCATGAT
1 AAACGCCGCTAAAGACCATGAACCTTAGCGGAGCTTTTTTCACAAACGCCACTAAAGACCATGAC
*** *
77312224 CTTTAGCGGTGCTTTTCCTGC
66 CTTTAGCGACACTTTTCCCGC
* ** *
77312245 AAACGCCTCTAAAGACCATG-ACCTTAGCGTCGCTTTTTTCACAAACGCCGCTAAAGACCATGAC
1 AAACGCCGCTAAAGACCATGAACCTTAGCGGAGCTTTTTTCACAAACGCCACTAAAGACCATGAC
77312309 CTTTAGCGACACTTTTCCCGC
66 CTTTAGCGACACTTTTCCCGC
*
77312330 AAACGCTGCTA
1 AAACGCCGCTA
77312341 TATAACAAAC
Statistics
Matches: 82, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
85 63 0.77
86 19 0.23
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (86 bp):
AAACGCCGCTAAAGACCATGAACCTTAGCGGAGCTTTTTTCACAAACGCCACTAAAGACCATGAC
CTTTAGCGACACTTTTCCCGC
Found at i:77312333 original size:43 final size:43
Alignment explanation
Indices: 77312159--77312386 Score: 212
Period size: 43 Copynumber: 5.3 Consensus size: 43
77312149 TTATTTAAAA
* * **
77312159 AAACGCCGCTAAAGACCATGAACTTTAGTGGA-GCTTTTTTCGC
1 AAACGCCGCTAAAGACCATGACCTTTAG-CGACGCTTTTCCCGC
* * ** *
77312202 AAACGCCACTAAAGACCATGATCTTTAGCGGTGCTTTTCCTGC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGACGCTTTTCCCGC
* * ** *
77312245 AAACGCCTCTAAAGACCATGACC-TTAGCGTCGCTTTTTTCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGACGCTTTTCCCGC
*
77312287 AAACGCCGCTAAAGACCATGACCTTTAGCGACACTTTTCCCGC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGACGCTTTTCCCGC
* * * * * *
77312330 AAACGCTGCTATATAACA-AACCTTTAGCTG-CGCTTTTCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGC-GACGCTTTTCCCGC
*
77312372 AAATGCCGCTAAAGA
1 AAACGCCGCTAAAGA
77312387 ATATAACCTT
Statistics
Matches: 150, Mismatches: 32, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
42 66 0.44
43 84 0.56
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGACGCTTTTCCCGC
Found at i:77312357 original size:85 final size:85
Alignment explanation
Indices: 77312159--77312386 Score: 221
Period size: 85 Copynumber: 2.7 Consensus size: 85
77312149 TTATTTAAAA
* * * * * *
77312159 AAACGCCGCTAAAGACCATGAACTTTAG-TGGAGCTTTTTTCGCAAACGCCACTAAAGACCATGA
1 AAACGCCTCTAAAGAACAT-AACCTTAGCT-GCGCTTTTTTCACAAACGCCGCTAAAGACCATGA
* *** *
77312223 TCTTTAGCGGTGCTTTTCCTGC
64 CCTTTAGCGACACTTTTCCCGC
* *
77312245 AAACGCCTCTAAAGACCATGACCTTAGC-GTCGCTTTTTTCACAAACGCCGCTAAAGACCATGAC
1 AAACGCCTCTAAAGAACATAACCTTAGCTG-CGCTTTTTTCACAAACGCCGCTAAAGACCATGAC
77312309 CTTTAGCGACACTTTTCCCGC
65 CTTTAGCGACACTTTTCCCGC
* * ** *
77312330 AAACG-CTGCTATATAACA-AACCTTTAGCTGCGCTTTTCCCACAAATGCCGCTAAAGA
1 AAACGCCT-CTAAAGAACATAACC-TTAGCTGCGCTTTTTTCACAAACGCCGCTAAAGA
77312387 ATATAACCTT
Statistics
Matches: 119, Mismatches: 18, Indels: 11
0.80 0.12 0.07
Matches are distributed among these distances:
84 6 0.05
85 94 0.79
86 19 0.16
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.26
Consensus pattern (85 bp):
AAACGCCTCTAAAGAACATAACCTTAGCTGCGCTTTTTTCACAAACGCCGCTAAAGACCATGACC
TTTAGCGACACTTTTCCCGC
Found at i:77317466 original size:22 final size:22
Alignment explanation
Indices: 77317441--77317490 Score: 100
Period size: 22 Copynumber: 2.3 Consensus size: 22
77317431 AATCCCAACT
77317441 CTTAAAACAGTAACTCATAAAC
1 CTTAAAACAGTAACTCATAAAC
77317463 CTTAAAACAGTAACTCATAAAC
1 CTTAAAACAGTAACTCATAAAC
77317485 CTTAAA
1 CTTAAA
77317491 CCCTTAACCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.50, C:0.22, G:0.04, T:0.24
Consensus pattern (22 bp):
CTTAAAACAGTAACTCATAAAC
Found at i:77317498 original size:22 final size:22
Alignment explanation
Indices: 77317441--77317517 Score: 86
Period size: 22 Copynumber: 3.6 Consensus size: 22
77317431 AATCCCAACT
*
77317441 CTTAAAACAGTAACTCATAAAC
1 CTTAAACCAGTAACTCATAAAC
*
77317463 CTTAAAACAGTAACTCATAAAC
1 CTTAAACCAGTAACTCATAAAC
** *
77317485 CTTAAACCCTTAAC-CATATAC
1 CTTAAACCAGTAACTCATAAAC
*
77317506 CCTAAACC-GTAA
1 CTTAAACCAGTAA
77317518 ACCCTAAACT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
20 3 0.06
21 13 0.27
22 33 0.67
ACGTcount: A:0.45, C:0.27, G:0.04, T:0.23
Consensus pattern (22 bp):
CTTAAACCAGTAACTCATAAAC
Found at i:77317499 original size:14 final size:14
Alignment explanation
Indices: 77317480--77317531 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
77317470 CAGTAACTCA
*
77317480 TAAACCTTAAACCC
1 TAAACCATAAACCC
* *
77317494 TTAACCATATACCC
1 TAAACCATAAACCC
*
77317508 TAAACCGTAAACCC
1 TAAACCATAAACCC
*
77317522 TAAACTATAA
1 TAAACCATAA
77317532 TAATAATTGA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.44, C:0.31, G:0.02, T:0.23
Consensus pattern (14 bp):
TAAACCATAAACCC
Found at i:77317755 original size:15 final size:15
Alignment explanation
Indices: 77317720--77317766 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
77317710 TTAGACCCCT
*
77317720 AACCCCTAACCCTTA
1 AACCCATAACCCTTA
*
77317735 AA-CCATAATCCTTA
1 AACCCATAACCCTTA
*
77317749 AACCCATAACCCCTA
1 AACCCATAACCCTTA
77317764 AAC
1 AAC
77317767 TTTAAACCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 12 0.44
15 15 0.56
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.19
Consensus pattern (15 bp):
AACCCATAACCCTTA
Found at i:77317772 original size:36 final size:36
Alignment explanation
Indices: 77317714--77317808 Score: 127
Period size: 36 Copynumber: 2.6 Consensus size: 36
77317704 TTAACTTTAG
* * *
77317714 ACCCCTAACCCCTAACCCTTAAACCATAATCCTTAA
1 ACCCATAACCCCTAAACCTTAAACCATAATCCCTAA
*
77317750 ACCCATAACCCCTAAACTTTAAACCATAATCCCTAA
1 ACCCATAACCCCTAAACCTTAAACCATAATCCCTAA
* * *
77317786 ACCAATAATCCATAAACCTTAAA
1 ACCCATAACCCCTAAACCTTAAA
77317809 ATGGTAACTC
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 51 1.00
ACGTcount: A:0.42, C:0.36, G:0.00, T:0.22
Consensus pattern (36 bp):
ACCCATAACCCCTAAACCTTAAACCATAATCCCTAA
Done.