Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 269 of 444
Found at i:77317776 original size:21 final size:22
Alignment explanation
Indices: 77317746--77317787 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
77317736 ACCATAATCC
77317746 TTAAACCCATAACCCCTAAACT
1 TTAAACCCATAACCCCTAAACT
*
77317768 TTAAA-CCATAATCCCTAAAC
1 TTAAACCCATAACCCCTAAAC
77317788 CAATAATCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.43, C:0.33, G:0.00, T:0.24
Consensus pattern (22 bp):
TTAAACCCATAACCCCTAAACT
Found at i:77317793 original size:15 final size:14
Alignment explanation
Indices: 77317769--77317803 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
77317759 CCCTAAACTT
*
77317769 TAAACCATAATCCC
1 TAAACCATAATCCA
77317783 TAAACCAATAATCCA
1 TAAACC-ATAATCCA
77317798 TAAACC
1 TAAACC
77317804 TTAAAATGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.20
Consensus pattern (14 bp):
TAAACCATAATCCA
Found at i:77317862 original size:14 final size:14
Alignment explanation
Indices: 77317727--77317866 Score: 59
Period size: 14 Copynumber: 9.7 Consensus size: 14
77317717 CCTAACCCCT
77317727 AACCCTTAAACCATA
1 AACCC-TAAACCATA
* *
77317742 ATCCTTAAACCCATA
1 AACCCTAAA-CCATA
* **
77317757 ACCCCTAAACTTTA
1 AACCCTAAACCATA
* * *
77317771 AACCATAATCCCTA
1 AACCCTAAACCATA
* *
77317785 AACCAATAATCCATA
1 AACC-CTAAACCATA
* *
77317800 AACCTTAAA--ATGGT
1 AACCCTAAACCAT--A
* *
77317814 AACTCATAAACCTTA
1 AAC-CCTAAACCATA
*
77317829 AACCCTTAACCATA
1 AACCCTAAACCATA
**
77317843 TGCCCTAAACCATA
1 AACCCTAAACCATA
77317857 AACCCTAAAC
1 AACCCTAAAC
77317867 TATATGATAA
Statistics
Matches: 92, Mismatches: 26, Indels: 15
0.69 0.20 0.11
Matches are distributed among these distances:
12 2 0.02
14 53 0.58
15 36 0.39
17 1 0.01
ACGTcount: A:0.44, C:0.31, G:0.02, T:0.23
Consensus pattern (14 bp):
AACCCTAAACCATA
Found at i:77319293 original size:11 final size:12
Alignment explanation
Indices: 77319256--77319295 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
77319246 TTCTCAATCC
*
77319256 AAACGCCACTAA
1 AAACGCCGCTAA
77319268 AAACGCCGCTAA
1 AAACGCCGCTAA
77319280 AAACGCCGCTAA
1 AAACGCCGCTAA
77319292 AAAC
1 AAAC
77319296 CTGTTTTGCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.47, C:0.33, G:0.12, T:0.07
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:77323104 original size:50 final size:50
Alignment explanation
Indices: 77322985--77323158 Score: 147
Period size: 47 Copynumber: 3.7 Consensus size: 50
77322975 ATAGGGTTAA
* * ** *
77322985 TGCCGATGCCATGTCCCAGACATGGTTTTACACTGGCTCATC-C--ATCAAG
1 TGCCGATGCCATGCCCCAGACATGGTCTTACACCAGCTC-TCACATATC-CG
*
77323034 T--CGATGCCATGTCCCAGACATGGTCTTACACCAGCTCTCACATATCCG
1 TGCCGATGCCATGCCCCAGACATGGTCTTACACCAGCTCTCACATATCCG
* ** *
77323082 TGCCGATGCCATGCCCCAGACATAGTCTT--A-CA-CTGACACATCT-CG
1 TGCCGATGCCATGCCCCAGACATGGTCTTACACCAGCTCTCACATATCCG
77323127 TAGCCGATG-CATGCCCCAGACAT-GTCTTACAC
1 T-GCCGATGCCATGCCCCAGACATGGTCTTACAC
77323159 TGGCACACAA
Statistics
Matches: 107, Mismatches: 9, Indels: 20
0.79 0.07 0.15
Matches are distributed among these distances:
44 5 0.05
45 17 0.16
46 18 0.17
47 36 0.34
48 3 0.03
49 4 0.04
50 24 0.22
ACGTcount: A:0.24, C:0.34, G:0.18, T:0.24
Consensus pattern (50 bp):
TGCCGATGCCATGCCCCAGACATGGTCTTACACCAGCTCTCACATATCCG
Found at i:77324897 original size:40 final size:40
Alignment explanation
Indices: 77324822--77324897 Score: 100
Period size: 41 Copynumber: 1.9 Consensus size: 40
77324812 TATCCGTAGC
* *
77324822 GTTTGACCAAAAACGCTACTATTGCTCAACTTTTTGTGCT
1 GTTTGACCAAAAACGCCACTATTGCTCAACCTTTTGTGCT
* *
77324862 GTTTGGACCAAAAAGGCCACTATTGCT-TACCTTTTG
1 GTTT-GACCAAAAACGCCACTATTGCTCAACCTTTTG
77324898 CGGCATTTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 11 0.35
41 20 0.65
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (40 bp):
GTTTGACCAAAAACGCCACTATTGCTCAACCTTTTGTGCT
Found at i:77325724 original size:7 final size:7
Alignment explanation
Indices: 77325714--77325760 Score: 85
Period size: 7 Copynumber: 6.7 Consensus size: 7
77325704 ATCCTAAATC
77325714 CTAAACA
1 CTAAACA
*
77325721 CTAAAGA
1 CTAAACA
77325728 CTAAACA
1 CTAAACA
77325735 CTAAACA
1 CTAAACA
77325742 CTAAACA
1 CTAAACA
77325749 CTAAACA
1 CTAAACA
77325756 CTAAA
1 CTAAA
77325761 GTCATCAACC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.57, C:0.26, G:0.02, T:0.15
Consensus pattern (7 bp):
CTAAACA
Found at i:77325724 original size:14 final size:13
Alignment explanation
Indices: 77325707--77325760 Score: 63
Period size: 14 Copynumber: 3.8 Consensus size: 13
77325697 CCCCTAAATC
77325707 CTAAATCCTAAACA
1 CTAAA-CCTAAACA
*
77325721 CTAAAGACTAAACA
1 CTAAA-CCTAAACA
77325735 CTAAACACTAAACA
1 CTAAAC-CTAAACA
77325749 CTAAACACTAAA
1 CTAAAC-CTAAA
77325761 GTCATCAACC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
14 36 1.00
ACGTcount: A:0.56, C:0.26, G:0.02, T:0.17
Consensus pattern (13 bp):
CTAAACCTAAACA
Found at i:77326798 original size:41 final size:41
Alignment explanation
Indices: 77326709--77326797 Score: 108
Period size: 41 Copynumber: 2.1 Consensus size: 41
77326699 CTTTTTGCAA
** *
77326709 CGTTTTTCTCATAAGTGCCGCTACAGCTAGACATTTTGCTG
1 CGTTTTTCTCATAAACGCCGCTACAGCTAGACATTTTGCGG
* *
77326750 CGTTTTTCTCATAAACGCCGCTATAGCTCTA-ACCTTTTGCGG
1 CGTTTTTCTCATAAACGCCGCTACAG--CTAGACATTTTGCGG
77326792 CGTTTT
1 CGTTTT
77326798 CCGATTAGTG
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
41 23 0.56
42 15 0.37
43 3 0.07
ACGTcount: A:0.18, C:0.26, G:0.18, T:0.38
Consensus pattern (41 bp):
CGTTTTTCTCATAAACGCCGCTACAGCTAGACATTTTGCGG
Found at i:77327244 original size:22 final size:23
Alignment explanation
Indices: 77327197--77327246 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
77327187 AACATAATCA
*
77327197 AAGTGCCAAAATAAATTGCACCG
1 AAGTGCCAAAATAAATCGCACCG
* *
77327220 AAGTGCCATAAT-AATCGCACTG
1 AAGTGCCAAAATAAATCGCACCG
77327242 AAGTG
1 AAGTG
77327247 TGAGTATGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 13 0.54
23 11 0.46
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (23 bp):
AAGTGCCAAAATAAATCGCACCG
Found at i:77329724 original size:46 final size:46
Alignment explanation
Indices: 77329674--77329846 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
77329664 TGGTTGAGCA
*
77329674 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
77329720 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
77329767 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
77329813 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
77329847 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.58
47 29 0.27
48 3 0.03
50 4 0.04
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:77329830 original size:93 final size:93
Alignment explanation
Indices: 77329671--77329841 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
77329661 GGATGGTTGA
* * *
77329671 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGCCCGAACTCGTTGAGT
77329736 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
77329764 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATACGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGCCCGAACTCGTTGAGT
77329829 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
77329842 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:77334787 original size:20 final size:20
Alignment explanation
Indices: 77334764--77334801 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
77334754 CACATCCAAA
*
77334764 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
77334784 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
77334802 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:77335001 original size:47 final size:47
Alignment explanation
Indices: 77334932--77335420 Score: 753
Period size: 47 Copynumber: 10.3 Consensus size: 47
77334922 CCCTTCGGGA
* * * * *
77334932 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77334979 CTTATCACATATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
77335026 TTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77335073 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77335120 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77335167 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77335214 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
77335261 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77335308 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
77335357 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
77335406 CTTATCACATATATA
1 CTTATCACATATATA
77335421 TATATCTCAT
Statistics
Matches: 406, Mismatches: 34, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
47 313 0.77
49 93 0.23
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:77335104 original size:25 final size:25
Alignment explanation
Indices: 77335029--77335107 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
77335019 ATTAGGCTTT
77335029 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
*** * *
77335054 ATCACAT-TGGCCAC--TCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
77335076 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
77335101 ATCACAT
1 ATCACAT
77335108 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 9 0.23
23 7 0.18
24 7 0.18
25 16 0.41
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:77340627 original size:12 final size:11
Alignment explanation
Indices: 77340600--77340646 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
77340590 AAAAGTTTTT
77340600 AATT-AAAATA
1 AATTAAAAATA
77340610 ATATTAAAAAATA
1 A-ATT-AAAAATA
*
77340623 AATTAAACATA
1 AATTAAAAATA
*
77340634 AAATAAAAATA
1 AATTAAAAATA
77340645 AA
1 AA
77340647 AAAAAACCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
10 1 0.03
11 20 0.65
12 3 0.10
13 7 0.23
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (11 bp):
AATTAAAAATA
Found at i:77342390 original size:57 final size:57
Alignment explanation
Indices: 77342272--77342402 Score: 154
Period size: 57 Copynumber: 2.3 Consensus size: 57
77342262 TGTTACAATT
* * * * * *
77342272 AGGATTTAGCCTGTACTAGTAATCCTAATTGAGCTCTTTTGAGCATATGTCATAGAA
1 AGGATTTAGCCTGGACTAGTAATCCTAATTAAGCTCATGTGAGCATATATCAGAGAA
* * * ** *
77342329 AGGATTCAACCTGGACTAGTAATCCTAATTAAGTTCATGTGAGCATATATTGGAGAC
1 AGGATTTAGCCTGGACTAGTAATCCTAATTAAGCTCATGTGAGCATATATCAGAGAA
77342386 AGGATTTAGCCTGGACT
1 AGGATTTAGCCTGGACT
77342403 GATAACCCTA
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (57 bp):
AGGATTTAGCCTGGACTAGTAATCCTAATTAAGCTCATGTGAGCATATATCAGAGAA
Found at i:77346906 original size:22 final size:22
Alignment explanation
Indices: 77346850--77346906 Score: 96
Period size: 22 Copynumber: 2.6 Consensus size: 22
77346840 ACTGTCTGCA
* *
77346850 ACACGGGCGTGTCCCTTGGACC
1 ACACAGGCGTGTGCCTTGGACC
77346872 ACACAGGCGTGTGCCTTGGACC
1 ACACAGGCGTGTGCCTTGGACC
77346894 ACACAGGCGTGTG
1 ACACAGGCGTGTG
77346907 AGCCCTGCAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.18
Consensus pattern (22 bp):
ACACAGGCGTGTGCCTTGGACC
Found at i:77348114 original size:52 final size:52
Alignment explanation
Indices: 77348056--77348159 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 52
77348046 ATTCATATGA
* *
77348056 TACTATTTTCTACTTCTACTGATTGAAGCCCTGAATTGCGAATATGCAAATT
1 TACTATTTTCTACTTCTACTAATTGAAGCCCTGAATTGCGAATATACAAATT
77348108 TACTATTTTCTACTTCTACTAATTGAAGCCCTGAATTGCGAATATACAAATT
1 TACTATTTTCTACTTCTACTAATTGAAGCCCTGAATTGCGAATATACAAATT
77348160 ATATTGTTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (52 bp):
TACTATTTTCTACTTCTACTAATTGAAGCCCTGAATTGCGAATATACAAATT
Found at i:77350023 original size:40 final size:40
Alignment explanation
Indices: 77349952--77350144 Score: 264
Period size: 40 Copynumber: 4.8 Consensus size: 40
77349942 TATCTAGCAC
* * *
77349952 AGCCTGCAGGTTTTTAA-CCCGGATGTC-ATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGAT-ACAATTCCAGCACGA
*
77349991 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCTGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
*
77350031 AGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
* * * *
77350071 AGCCTGCGGGTCTTTAAGCCCTGATACGATTCTAGCACAA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
* *
77350111 AGCCTGTGGGTCTTTAAGCCCGGATACCATTCCA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCA
77350145 CATCAAATAA
Statistics
Matches: 137, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 16 0.12
40 121 0.88
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
Found at i:77354949 original size:21 final size:20
Alignment explanation
Indices: 77354925--77354967 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
77354915 GCCTAAGATG
*
77354925 TAAATTGGATTGAATTGAGTT
1 TAAATTGGATTAAATTGA-TT
*
77354946 TAAATTGTATTAAATTGATT
1 TAAATTGGATTAAATTGATT
77354966 TA
1 TA
77354968 CTCGTATAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.37, C:0.00, G:0.16, T:0.47
Consensus pattern (20 bp):
TAAATTGGATTAAATTGATT
Found at i:77355623 original size:57 final size:57
Alignment explanation
Indices: 77355440--77355637 Score: 181
Period size: 57 Copynumber: 3.5 Consensus size: 57
77355430 CATTATAGAT
* * ** * * *
77355440 AGGATTTAGCCCGGACGGGTAATCCTGATATAATCTC-TCTCGAGCATATGTTACA-ATT
1 AGGATTCAGCCTGGACTTGTAATCCTAAT-TAAGCTCTTCT-GAGCATATGTTACAGA-A
*
77355498 AGGATTTA-CCTTGGAC-TGATAATCCTAATTAAGCTCTTCTGAGCATATGTTACAGAA
1 AGGATTCAGCC-TGGACTTG-TAATCCTAATTAAGCTCTTCTGAGCATATGTTACAGAA
* ** *
77355555 AGGATTCAGCCTGGACTTGTAATCCTAATTAAGCTCTTTTGAGCATATGTTGGAGAC
1 AGGATTCAGCCTGGACTTGTAATCCTAATTAAGCTCTTCTGAGCATATGTTACAGAA
* *
77355612 AGGAATT-AGCCTGAACTGGTAATCCT
1 AGG-ATTCAGCCTGGACTTGTAATCCT
77355638 GTTATATTAT
Statistics
Matches: 121, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
57 89 0.74
58 32 0.26
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32
Consensus pattern (57 bp):
AGGATTCAGCCTGGACTTGTAATCCTAATTAAGCTCTTCTGAGCATATGTTACAGAA
Found at i:77358618 original size:26 final size:26
Alignment explanation
Indices: 77358589--77358669 Score: 74
Period size: 26 Copynumber: 3.0 Consensus size: 26
77358579 ATTTACACGA
77358589 AATGGTTATATAAAGTATGTATATGG
1 AATGGTTATATAAAGTATGTATATGG
* * *
77358615 AATGATTATATGAA-TCAGGTATATGG
1 AATGGTTATATAAAGT-ATGTATATGG
* * *
77358641 AAAATAGTTATATAAAGTGTTTATATGG
1 --AATGGTTATATAAAGTATGTATATGG
77358669 A
1 A
77358670 GTGTTGATAT
Statistics
Matches: 42, Mismatches: 9, Indels: 8
0.71 0.15 0.14
Matches are distributed among these distances:
25 1 0.02
26 22 0.52
28 18 0.43
29 1 0.02
ACGTcount: A:0.41, C:0.01, G:0.21, T:0.37
Consensus pattern (26 bp):
AATGGTTATATAAAGTATGTATATGG
Found at i:77358724 original size:13 final size:13
Alignment explanation
Indices: 77358706--77358737 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
77358696 AGGGACATTG
*
77358706 GAAATGAAAATTT
1 GAAATGAAAATGT
77358719 GAAATGAAAATGT
1 GAAATGAAAATGT
77358732 GAAATG
1 GAAATG
77358738 TTAAATGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.22, T:0.25
Consensus pattern (13 bp):
GAAATGAAAATGT
Found at i:77360441 original size:26 final size:26
Alignment explanation
Indices: 77360412--77360466 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
77360402 GGTTACCTGG
77360412 GTAATTACTCCTCACCATGGAGCATT
1 GTAATTACTCCTCACCATGGAGCATT
77360438 GTAATTACTCCTCACCATGGAGCATT
1 GTAATTACTCCTCACCATGGAGCATT
77360464 GTA
1 GTA
77360467 GTGTTGAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
GTAATTACTCCTCACCATGGAGCATT
Found at i:77360559 original size:20 final size:20
Alignment explanation
Indices: 77360522--77360640 Score: 116
Period size: 20 Copynumber: 6.0 Consensus size: 20
77360512 CAGAGGATCC
* * *
77360522 GAAA-TGCAAATAGTGGCAA
1 GAAAGTGCAATTAGGGGCAT
*
77360541 GAAAGTGCAATTAGAGGCACT
1 GAAAGTGCAATTAGGGGCA-T
*
77360562 G-AAGTGCAATAAGGGGCAT
1 GAAAGTGCAATTAGGGGCAT
77360581 GAAAGTGCAATTAGGGGCAT
1 GAAAGTGCAATTAGGGGCAT
* * *
77360601 GAAAGTGCAATCAAGGGCAC
1 GAAAGTGCAATTAGGGGCAT
* *
77360621 CATAGTGCAAATTAGGGGCA
1 GAAAGTGC-AATTAGGGGCA
77360641 ACGACATTTC
Statistics
Matches: 83, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
19 6 0.07
20 67 0.81
21 10 0.12
ACGTcount: A:0.39, C:0.13, G:0.31, T:0.17
Consensus pattern (20 bp):
GAAAGTGCAATTAGGGGCAT
Found at i:77360628 original size:60 final size:60
Alignment explanation
Indices: 77360522--77360640 Score: 136
Period size: 60 Copynumber: 2.0 Consensus size: 60
77360512 CAGAGGATCC
* * *
77360522 GAAATGCAAATAGTGGCAAGAAAGTGCAATTAGAGGCACTGAAGTGC-AATAAGGGGCAT
1 GAAATGCAAATAGGGGCAAGAAAGTGCAATAAGAGGCACTCAAGTGCAAATAAGGGGCAT
* * *
77360581 GAAAGTGCAATTAGGGGCATGAAAGTGCAATCAAG-GGCAC-CATAGTGCAAATTAGGGGCA
1 GAAA-TGCAAATAGGGGCAAGAAAGTGCAAT-AAGAGGCACTCA-AGTGCAAATAAGGGGCA
77360641 ACGACATTTC
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
59 5 0.10
60 33 0.66
61 12 0.24
ACGTcount: A:0.39, C:0.13, G:0.31, T:0.17
Consensus pattern (60 bp):
GAAATGCAAATAGGGGCAAGAAAGTGCAATAAGAGGCACTCAAGTGCAAATAAGGGGCAT
Found at i:77361744 original size:28 final size:24
Alignment explanation
Indices: 77361687--77361734 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
77361677 ACTAAAATTC
77361687 AATTTACTTATATAAAAACTATGT
1 AATTTACTTATATAAAAACTATGT
77361711 AATTTACTTATATAAAAACTATGT
1 AATTTACTTATATAAAAACTATGT
77361735 CAATATTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.08, G:0.04, T:0.42
Consensus pattern (24 bp):
AATTTACTTATATAAAAACTATGT
Found at i:77368016 original size:20 final size:20
Alignment explanation
Indices: 77367991--77368031 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
77367981 CTTCTAGGAG
77367991 TTAGTTCTTTGGATATTGAC
1 TTAGTTCTTTGGATATTGAC
77368011 TTAGTTCTTTGGATATTGAC
1 TTAGTTCTTTGGATATTGAC
77368031 T
1 T
77368032 CAAGAACTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.20, C:0.10, G:0.20, T:0.51
Consensus pattern (20 bp):
TTAGTTCTTTGGATATTGAC
Found at i:77377940 original size:18 final size:19
Alignment explanation
Indices: 77377919--77377955 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
77377909 TGAAAAATGT
77377919 AGAATGAG-AAAAAAAATA
1 AGAATGAGTAAAAAAAATA
77377937 AGAATGAGTTAAAAAAAAT
1 AGAATGAG-TAAAAAAAAT
77377956 GTTGTAATAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
20 9 0.53
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (19 bp):
AGAATGAGTAAAAAAAATA
Found at i:77382741 original size:93 final size:93
Alignment explanation
Indices: 77382582--77382753 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
77382572 GCCCATAAGC
* *
77382582 GAACTCGGACTCAAATCAACGAGCTTGGGCGTTCGCATCCACAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAAATCAACGAGCTTGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
77382647 CGAGCTCGGATGCCTAGTTACATCTCTT
66 CGAGCTCGGATGCCTAGTTACATCTCTT
* * * *
77382675 GAACTCGGACTCAACTCAATGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAAATCAACGAGCTTGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
*
77382740 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
77382754 CAAATATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAAATCAACGAGCTTGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTT
Found at i:77382745 original size:46 final size:46
Alignment explanation
Indices: 77382574--77382743 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 46
77382564 TGTAACCCGC
* * * *
77382574 CCATAAGCGAACTCGGACTCAAATCAACGAGCTTGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTGGACATTCGCAT
* * *
77382620 CCACAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTGGA---C-A-TTCGCAT
* *
77382670 CTC-T---TGAACTCGGACTCAACTCAATGAGTTTGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTTGGACATTCGCAT
77382713 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
77382744 TTCGGATGCC
Statistics
Matches: 100, Mismatches: 13, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
42 3 0.03
43 6 0.06
44 1 0.01
46 55 0.55
47 27 0.27
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTTGGACATTCGCAT
Found at i:77382768 original size:46 final size:44
Alignment explanation
Indices: 77382625--77382768 Score: 107
Period size: 46 Copynumber: 3.1 Consensus size: 44
77382615 CGCATCCACA
* *
77382625 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * * *
77382674 --TGAACTCGGACTCAACTCAATGAGTTTGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
77382717 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
77382764 AGTGA
1 AGTGA
77382769 CATGTCACTT
Statistics
Matches: 75, Mismatches: 10, Indels: 23
0.69 0.09 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
46 32 0.43
47 27 0.36
48 4 0.05
49 3 0.04
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.24
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:77391820 original size:93 final size:93
Alignment explanation
Indices: 77391653--77391825 Score: 242
Period size: 93 Copynumber: 1.9 Consensus size: 93
77391643 CGCCCATAAG
** *
77391653 CGAACTCAGACTCAACCCAATGAGCTCAGGCGTTCGCATCCATAAGTGAATTCGGACTCAACTCA
1 CGAACTCAGACTCAACCCAACAAGCTCAGGCATTCGCATCCATAAGTGAATTCGGACTCAACTCA
*
77391718 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGACCTCGGATGCCTAGTTACATCTCA
* * *
77391746 CGAACTCGGACTCAACTCAACAAGCTC-GGACATTCGCATCCATAAGTGAACTT-GGACTCGACT
1 CGAACTCAGACTCAACCCAACAAGCTCAGG-CATTCGCATCCATAAGTGAA-TTCGGACTCAACT
*
77391809 CAATGACCTCGGATGCC
64 CAACGACCTCGGATGCC
77391826 CAAATATCCT
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
92 2 0.03
93 66 0.94
94 2 0.03
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACCCAACAAGCTCAGGCATTCGCATCCATAAGTGAATTCGGACTCAACTCA
ACGACCTCGGATGCCTAGTTACATCTCA
Found at i:77394948 original size:2 final size:2
Alignment explanation
Indices: 77394902--77394931 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
77394892 TTGATCTATG
77394902 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77394932 GAAATTACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:77408341 original size:2 final size:2
Alignment explanation
Indices: 77408285--77408324 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
77408275 CTAATATGTG
77408285 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77408325 GAAATTGCAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:77409921 original size:43 final size:46
Alignment explanation
Indices: 77409855--77409988 Score: 157
Period size: 43 Copynumber: 2.9 Consensus size: 46
77409845 GAGATATGTG
*
77409855 GCATCTGAACTCGTTGAGAGGTCCGAGTTCATTATGGATGC-A-A-
1 GCATCTGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCGATAT
* * * *
77409898 GCATCCGAGCTCGTTAAGTGGTCCGAGTTCATGATGGATGCGATTCAT
1 GCATCTGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCGA-T-AT
77409946 GTAACATCTGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATG
1 G---CATCTGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATG
77409989 TGTTACATGT
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
43 36 0.49
44 1 0.01
47 1 0.01
48 1 0.01
51 35 0.47
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (46 bp):
GCATCTGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCGATAT
Found at i:77411709 original size:29 final size:29
Alignment explanation
Indices: 77411676--77411778 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
77411666 GTGACGAGAT
77411676 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
77411705 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
77411734 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
77411763 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
77411779 AGTTCGGAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:77420212 original size:43 final size:43
Alignment explanation
Indices: 77420161--77420244 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
77420151 AAGATATGTG
* * *
77420161 GCATCCGAGCTCGTTGAGAGGTTCGAGTTCATTATGGATGCAT
1 GCATCCGAGCTAGTTGAGAGGTCCGAGTTCATGATGGATGCAT
*
77420204 GCATCCGAGCTAGTTGAGTGGTCCGAGTTCATGATGGATGC
1 GCATCCGAGCTAGTTGAGAGGTCCGAGTTCATGATGGATGC
77420245 GATTCATGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.20, C:0.19, G:0.32, T:0.29
Consensus pattern (43 bp):
GCATCCGAGCTAGTTGAGAGGTCCGAGTTCATGATGGATGCAT
Found at i:77428053 original size:22 final size:22
Alignment explanation
Indices: 77428025--77428069 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
77428015 GTGGATACTT
77428025 ATTCTTCCAGTCAGTTTATTCA
1 ATTCTTCCAGTCAGTTTATTCA
77428047 ATTCTTCCAGTCAGTTTATTCA
1 ATTCTTCCAGTCAGTTTATTCA
77428069 A
1 A
77428070 CTACCGATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.24, C:0.22, G:0.09, T:0.44
Consensus pattern (22 bp):
ATTCTTCCAGTCAGTTTATTCA
Found at i:77431331 original size:18 final size:18
Alignment explanation
Indices: 77431308--77431376 Score: 111
Period size: 18 Copynumber: 3.8 Consensus size: 18
77431298 TTTAGAATTA
*
77431308 TGGGCCCACATGCTCGTG
1 TGGGCCCACATGCCCGTG
*
77431326 TGGGCCCATATGCCCGTG
1 TGGGCCCACATGCCCGTG
77431344 TGGGCCCACATGCCCGTG
1 TGGGCCCACATGCCCGTG
*
77431362 TGGGCCCACACGCCC
1 TGGGCCCACATGCCC
77431377 AGACTAACCT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.12, C:0.39, G:0.32, T:0.17
Consensus pattern (18 bp):
TGGGCCCACATGCCCGTG
Found at i:77437110 original size:39 final size:39
Alignment explanation
Indices: 77437026--77437178 Score: 216
Period size: 39 Copynumber: 3.9 Consensus size: 39
77437016 TATGGTAACC
** * *
77437026 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
77437066 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
77437105 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
**
77437144 TTCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
77437179 TCGAACACTC
Statistics
Matches: 102, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 87 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:77437152 original size:78 final size:79
Alignment explanation
Indices: 77436995--77437177 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
77436985 TCGTTCAAAC
* * **
77436995 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
77437060 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
77437075 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
*
77437139 CAATTTTCACAATT
66 CAATTTGCACAATT
77437153 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
77437178 CTCGAACACT
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:77445153 original size:39 final size:39
Alignment explanation
Indices: 77445069--77445221 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
77445059 TATGGTAACC
** * *
77445069 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
77445109 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
77445148 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
77445187 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
77445222 TCGAACATTC
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 88 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:77445194 original size:78 final size:79
Alignment explanation
Indices: 77445038--77445220 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
77445028 TCGTTCAAAC
* * **
77445038 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
77445103 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
77445118 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
77445182 CAATTTGCACAATT
66 CAATTTGCACAATT
77445196 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
77445221 CTCGAACATT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:77446925 original size:23 final size:25
Alignment explanation
Indices: 77446899--77446950 Score: 63
Period size: 27 Copynumber: 2.1 Consensus size: 25
77446889 CAATTTTGGG
77446899 ATGTCA-CA-GGTAGAATTACTGAA
1 ATGTCATCAGGGTAGAATTACTGAA
*
77446922 ATGTCATTGTAGGGTAGAATTACTGAA
1 ATGTCA-T-CAGGGTAGAATTACTGAA
77446949 AT
1 AT
77446951 ACCCTTGGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 6 0.25
26 1 0.04
27 17 0.71
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.31
Consensus pattern (25 bp):
ATGTCATCAGGGTAGAATTACTGAA
Found at i:77446969 original size:27 final size:26
Alignment explanation
Indices: 77446947--77447090 Score: 117
Period size: 27 Copynumber: 5.3 Consensus size: 26
77446937 AGAATTACTG
77446947 AAATACCCTTGGTTTACAAAATTACCA
1 AAATACCC-TGGTTTACAAAATTACCA
* * *
77446974 AAATACCCTCGATTAGCAAAATTAGCA
1 AAATACCCTGGTTTA-CAAAATTACCA
**
77447001 AAATACCCCTGGTTTGTAAAATTACCA
1 AAATA-CCCTGGTTTACAAAATTACCA
* ** * *
77447028 AAATACCCCTAGTTTGTAGAATTATCA
1 AAATA-CCCTGGTTTACAAAATTACCA
* ***
77447055 AAATACCACTGATTTGTGAAATTACCA
1 AAATACC-CTGGTTTACAAAATTACCA
77447082 AAATACCCT
1 AAATACCCT
77447091 CGACCTGTAA
Statistics
Matches: 98, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
26 9 0.09
27 82 0.84
28 7 0.07
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (26 bp):
AAATACCCTGGTTTACAAAATTACCA
Found at i:77447005 original size:54 final size:54
Alignment explanation
Indices: 77446947--77447093 Score: 172
Period size: 54 Copynumber: 2.7 Consensus size: 54
77446937 AGAATTACTG
**
77446947 AAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-TTAGCAAAATTAGCA
1 AAATACCC-TGGTTTGTAAAATTACCAAAATACCCTCGAGTTAGCAAAATTAGCA
* * * * *
77447001 AAATACCCCTGGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAGAATTATCA
1 AAATA-CCCTGGTTTGTAAAATTACCAAAATACCCTCGAGTTAGCAAAATTAGCA
* *
77447055 AAATACCACTGATTTGTGAAATTACCAAAATACCCTCGA
1 AAATACC-CTGGTTTGTAAAATTACCAAAATACCCTCGA
77447094 CCTGTAAAAT
Statistics
Matches: 79, Mismatches: 10, Indels: 7
0.82 0.10 0.07
Matches are distributed among these distances:
53 4 0.05
54 70 0.89
55 5 0.06
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (54 bp):
AAATACCCTGGTTTGTAAAATTACCAAAATACCCTCGAGTTAGCAAAATTAGCA
Found at i:77447103 original size:27 final size:27
Alignment explanation
Indices: 77446964--77447178 Score: 159
Period size: 27 Copynumber: 7.6 Consensus size: 27
77446954 CTTGGTTTAC
* *
77446964 AAAATTACCAAAATACCCTCGATTAGC
1 AAAATTACCAAAATACCCTCGATTTGT
* *
77446991 AAAATTAGCAAAATACCC-CTGGTTTGT
1 AAAATTACCAAAATACCCTC-GATTTGT
*
77447018 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTGT
* *
77447045 AGAATTATCAAAATACCACT-GATTTGT
1 AAAATTACCAAAATACC-CTCGATTTGT
* **
77447072 GAAATTACCAAAATACCCTCGACCTGT
1 AAAATTACCAAAATACCCTCGATTTGT
*
77447099 AAAATTATCGAAATACCCAAAATACCCTCGAATTGT
1 -AAA--AT-----TA-CCAAAATACCCTCGATTTGT
*
77447135 AAAATTACCAAAATACCC-CTGATTTGG
1 AAAATTACCAAAATACCCTC-GATTTGT
* *
77447162 AAAATTATCGAAATACC
1 AAAATTACCAAAATACC
77447179 ATTGATTCAG
Statistics
Matches: 151, Mismatches: 22, Indels: 30
0.74 0.11 0.15
Matches are distributed among these distances:
26 4 0.03
27 114 0.75
28 6 0.04
30 2 0.01
33 2 0.01
35 5 0.03
36 18 0.12
ACGTcount: A:0.42, C:0.22, G:0.10, T:0.27
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTGT
Found at i:77447105 original size:54 final size:53
Alignment explanation
Indices: 77446964--77447115 Score: 187
Period size: 54 Copynumber: 2.8 Consensus size: 53
77446954 CTTGGTTTAC
* * * *
77446964 AAAATTACCAAAATACCCTCGATTAGCAAAATTAGCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTCGATT-GTAAAATTATCAAAATACCACTGATTTGT
* * *
77447018 AAAATTACCAAAATACCCCTAGTTTGTAGAATTATCAAAATACCACTGATTTGT
1 AAAATTACCAAAATA-CCCTCGATTGTAAAATTATCAAAATACCACTGATTTGT
* * *
77447072 GAAATTACCAAAATACCCTCGACCTGTAAAATTATCGAAATACC
1 AAAATTACCAAAATACCCTCGA-TTGTAAAATTATCAAAATACC
77447116 CAAAATACCC
Statistics
Matches: 83, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
53 5 0.06
54 71 0.86
55 7 0.08
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.27
Consensus pattern (53 bp):
AAAATTACCAAAATACCCTCGATTGTAAAATTATCAAAATACCACTGATTTGT
Found at i:77447119 original size:36 final size:36
Alignment explanation
Indices: 77447079--77447152 Score: 112
Period size: 36 Copynumber: 2.1 Consensus size: 36
77447069 TGTGAAATTA
* * *
77447079 CCAAAATACCCTCGACCTGTAAAATTATCGAAATAC
1 CCAAAATACCCTCGAACTGTAAAATTACCAAAATAC
*
77447115 CCAAAATACCCTCGAATTGTAAAATTACCAAAATAC
1 CCAAAATACCCTCGAACTGTAAAATTACCAAAATAC
77447151 CC
1 CC
77447153 CTGATTTGGA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.43, C:0.28, G:0.07, T:0.22
Consensus pattern (36 bp):
CCAAAATACCCTCGAACTGTAAAATTACCAAAATAC
Found at i:77447142 original size:63 final size:63
Alignment explanation
Indices: 77447053--77447178 Score: 175
Period size: 63 Copynumber: 2.0 Consensus size: 63
77447043 GTAGAATTAT
* * *
77447053 CAAAATACCACTGATTTGTGAAATTACCAAAATA-CCCTCGACCTGTAAAATTATCGAAATACC
1 CAAAATACCACTGAATTGTAAAATTACCAAAATACCCCT-GACCTGGAAAATTATCGAAATACC
**
77447116 CAAAATACC-CTCGAATTGTAAAATTACCAAAATACCCCTGATTTGGAAAATTATCGAAATACC
1 CAAAATACCACT-GAATTGTAAAATTACCAAAATACCCCTGACCTGGAAAATTATCGAAATACC
77447179 ATTGATTCAG
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
62 2 0.04
63 50 0.89
64 4 0.07
ACGTcount: A:0.42, C:0.23, G:0.10, T:0.25
Consensus pattern (63 bp):
CAAAATACCACTGAATTGTAAAATTACCAAAATACCCCTGACCTGGAAAATTATCGAAATACC
Found at i:77447184 original size:27 final size:27
Alignment explanation
Indices: 77447135--77447290 Score: 118
Period size: 27 Copynumber: 5.7 Consensus size: 27
77447125 CTCGAATTGT
* * * **
77447135 AAAATTACCAAAATACCCCTGATTTGG
1 AAAATTATCGAAATACCCTTGATTTAC
* * *
77447162 AAAATTATCGAAATACCATTGATTCAG
1 AAAATTATCGAAATACCCTTGATTTAC
* * *
77447189 AAAATTATAGAATTACCCCTGATTTAC
1 AAAATTATCGAAATACCCTTGATTTAC
*
77447216 AAAATTA-CAAAAATACCCTTGACTTT-C
1 AAAATTATC-GAAATACCCTTGA-TTTAC
* * * *
77447243 AAAAATTATAGAAATACCATTGGTTTGC
1 -AAAATTATCGAAATACCCTTGATTTAC
*
77447271 AAAATTATTGAAATACCCTT
1 AAAATTATCGAAATACCCTT
77447291 AGTTTGTAGA
Statistics
Matches: 102, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
27 81 0.79
28 21 0.21
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTATCGAAATACCCTTGATTTAC
Found at i:77447193 original size:90 final size:90
Alignment explanation
Indices: 77447041--77447206 Score: 201
Period size: 90 Copynumber: 1.8 Consensus size: 90
77447031 TACCCCTAGT
* * * *
77447041 TTGTAGAATTATCAAAATACCACTGATTTGTGAAATTACCAAAATACCCTCGACCTGTAAAATTA
1 TTGTAAAATTACCAAAATACCACTGATTTGTGAAATTACCAAAATACCATCGACCAGTAAAATTA
*
77447106 TCGAAATACCCAAAATACCCTCGAA
66 TAGAAATACCCAAAATACCCTCGAA
* * * * *
77447131 TTGTAAAATTACCAAAATACCCCTGATTTG-GAAAATTATCGAAATACCATTGATTCAG-AAAAT
1 TTGTAAAATTACCAAAATACCACTGATTTGTG-AAATTACCAAAATACCATCGA-CCAGTAAAAT
*
77447194 TATAGAATTACCC
64 TATAGAAATACCC
77447207 CTGATTTACA
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
89 1 0.02
90 60 0.95
91 2 0.03
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.28
Consensus pattern (90 bp):
TTGTAAAATTACCAAAATACCACTGATTTGTGAAATTACCAAAATACCATCGACCAGTAAAATTA
TAGAAATACCCAAAATACCCTCGAA
Found at i:77447274 original size:55 final size:54
Alignment explanation
Indices: 77447145--77447277 Score: 135
Period size: 54 Copynumber: 2.4 Consensus size: 54
77447135 AAAATTACCA
* ** *
77447145 AAATACCCCTGATTTGGAAAATTATC-GAAATACCATTGATTCAGAAAATTATAG
1 AAATACCACTGATTTACAAAATTA-CAAAAATACCATTGATTCAGAAAATTATAG
* * *
77447199 AATTACCCCTGATTTACAAAATTACAAAAATACCCTTGACTTTCA-AAAATTATAG
1 AAATACCACTGATTTACAAAATTACAAAAATACCATTGA--TTCAGAAAATTATAG
* * *
77447254 AAATACCATTGGTTTGCAAAATTA
1 AAATACCACTGATTTACAAAATTA
77447278 TTGAAATACC
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
53 1 0.02
54 32 0.48
55 29 0.44
56 4 0.06
ACGTcount: A:0.43, C:0.17, G:0.10, T:0.31
Consensus pattern (54 bp):
AAATACCACTGATTTACAAAATTACAAAAATACCATTGATTCAGAAAATTATAG
Found at i:77447285 original size:55 final size:54
Alignment explanation
Indices: 77447145--77447290 Score: 159
Period size: 55 Copynumber: 2.7 Consensus size: 54
77447135 AAAATTACCA
* * * *
77447145 AAATACCCCTGATTTGGAAAATTATCGAAATACCATTGATTCAGAAAATTATAG
1 AAATACCACTGATTTGCAAAATTATAGAAATACCCTTGATTCAGAAAATTATAG
* * * * *
77447199 AATTACCCCTGATTTACAAAATTACAAAAATACCCTTGACTTTCA-AAAATTATAG
1 AAATACCACTGATTTGCAAAATTATAGAAATACCCTTGA--TTCAGAAAATTATAG
* * *
77447254 AAATACCATTGGTTTGCAAAATTATTGAAATACCCTT
1 AAATACCACTGATTTGCAAAATTATAGAAATACCCTT
77447291 AGTTTGTAGA
Statistics
Matches: 75, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
54 32 0.43
55 39 0.52
56 4 0.05
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.32
Consensus pattern (54 bp):
AAATACCACTGATTTGCAAAATTATAGAAATACCCTTGATTCAGAAAATTATAG
Found at i:77447613 original size:41 final size:41
Alignment explanation
Indices: 77447556--77447678 Score: 156
Period size: 41 Copynumber: 3.0 Consensus size: 41
77447546 GGAGGAAGAA
* *
77447556 ATTGAGGATCGTATGGTTGCTTGGCGACCGTGGATCCACTG
1 ATTGAGGATCGTATGGTTGCTTGACGACCGTGGATCCACCG
* * ** * *
77447597 ATTGAGGATCGCATGGTTGTTTGATAATCGTGGACCCACCG
1 ATTGAGGATCGTATGGTTGCTTGACGACCGTGGATCCACCG
* *
77447638 ATTAAGGATCGTATGGTTGCTTGACGACTGTGGATCCACCG
1 ATTGAGGATCGTATGGTTGCTTGACGACCGTGGATCCACCG
77447679 GTGGCTTTTA
Statistics
Matches: 66, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
41 66 1.00
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (41 bp):
ATTGAGGATCGTATGGTTGCTTGACGACCGTGGATCCACCG
Found at i:77447872 original size:22 final size:22
Alignment explanation
Indices: 77447820--77447884 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
77447810 GCCAATTATT
* *
77447820 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGAGCCAAC
*
77447842 CT-ACATATGGCTCTGAGCCAAC
1 CTGA-TTATGGCTCTGAGCCAAC
* *
77447864 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGAGCCAA
77447885 GCGTATTTTC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.29
Consensus pattern (22 bp):
CTGATTATGGCTCTGAGCCAAC
Found at i:77448112 original size:22 final size:22
Alignment explanation
Indices: 77448087--77448134 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
77448077 GTTGCTGCGA
* * *
77448087 TGTTTATGGCTATGTGCTGTCC
1 TGTTTACGGCCATGAGCTGTCC
*
77448109 TGTTTACGGCCATGAGCTGTTC
1 TGTTTACGGCCATGAGCTGTCC
77448131 TGTT
1 TGTT
77448135 GACTTAGTGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.10, C:0.19, G:0.27, T:0.44
Consensus pattern (22 bp):
TGTTTACGGCCATGAGCTGTCC
Found at i:77460107 original size:40 final size:39
Alignment explanation
Indices: 77460047--77460250 Score: 171
Period size: 40 Copynumber: 5.1 Consensus size: 39
77460037 CGGAATTTAG
* **
77460047 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAA-TGCCTTCGGGTCTTAAC
*** * *
77460087 CCGGAGT-TGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGA-TATAACAACTCGCAC-AATGCCTTCGGGTCTTAAC
77460127 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAAC
* * * *
77460167 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTCTTAAC
* * * *
77460207 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTCTTAAC
77460247 CCGG
1 CCGG
77460251 GTATCATTCA
Statistics
Matches: 142, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 1 0.01
40 137 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (39 bp):
CCGGATATAACAACTCGCACAATGCCTTCGGGTCTTAAC
Found at i:77460133 original size:80 final size:79
Alignment explanation
Indices: 77460034--77460250 Score: 249
Period size: 80 Copynumber: 2.7 Consensus size: 79
77460024 AATCGAGTCT
* * * **
77460034 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGAGT-TGG
1 CTTCGGGACTTAGCCCGGATATAACCACTAGCACAA-TGCCTTCGGGTCTTAACCCGGA-TATAA
*
77460097 TAACTTGCACAAATGC
64 TAACTAGCACAAATGC
* * *
77460113 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACCACTAGCAC-AATGCCTTCGGGTCTTAACCCGGATATAAT
* *
77460178 CACTAGCATAAATGC
65 AACTAGCACAAATGC
* * * *
77460193 CTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGGATATAACCACTAGCA-CAATGCCTTCGGGTCTTAACCCGG
77460251 GTATCATTCA
Statistics
Matches: 116, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
79 11 0.09
80 103 0.89
81 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAACCACTAGCACAATGCCTTCGGGTCTTAACCCGGATATAATA
ACTAGCACAAATGC
Found at i:77469879 original size:28 final size:29
Alignment explanation
Indices: 77469833--77469992 Score: 198
Period size: 29 Copynumber: 5.6 Consensus size: 29
77469823 GTGACGAGAT
77469833 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
77469862 TGGCACTAA-TGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
77469890 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
77469919 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
77469948 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
77469977 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
77469993 AAATCGAGTA
Statistics
Matches: 115, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
28 30 0.26
29 85 0.74
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:77477778 original size:28 final size:29
Alignment explanation
Indices: 77477732--77477891 Score: 198
Period size: 29 Copynumber: 5.6 Consensus size: 29
77477722 GTGACGAGAT
77477732 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
77477761 TGGCACTAA-TGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
77477789 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
77477818 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
77477847 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
77477876 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
77477892 AAATCGAGTA
Statistics
Matches: 115, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
28 30 0.26
29 85 0.74
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:77492575 original size:28 final size:28
Alignment explanation
Indices: 77492471--77492585 Score: 101
Period size: 28 Copynumber: 4.1 Consensus size: 28
77492461 ACATACATGC
* *
77492471 ATATGGCCCACTTGGCCCAATCTC-TTT
1 ATATGGCCCACTAGGCCCAATCACATTT
* *
77492498 CATATGGCCCATTAGG-CCATTCACATTT
1 -ATATGGCCCACTAGGCCCAATCACATTT
* * * * *
77492526 ATGTCGCCTATTAGGCCTAAATCACATTT
1 ATATGGCCCACTAGGCC-CAATCACATTT
77492555 ATATGG-CCACTAGGCCCAAATCACATTT
1 ATATGGCCCACTAGGCCC-AATCACATTT
77492583 ATA
1 ATA
77492586 GCCATGCTCA
Statistics
Matches: 69, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
27 18 0.26
28 38 0.55
29 13 0.19
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (28 bp):
ATATGGCCCACTAGGCCCAATCACATTT
Found at i:77492677 original size:18 final size:19
Alignment explanation
Indices: 77492654--77492690 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
77492644 TTGGCCCAAC
*
77492654 AGCCCA-TCGGGCCCATTT
1 AGCCCATTCCGGCCCATTT
77492672 AGCCCATTCCGGCCCATTT
1 AGCCCATTCCGGCCCATTT
77492691 GGCCAAATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.16, C:0.41, G:0.19, T:0.24
Consensus pattern (19 bp):
AGCCCATTCCGGCCCATTT
Found at i:77492822 original size:16 final size:16
Alignment explanation
Indices: 77492801--77492831 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77492791 CCAAACTTTT
77492801 GGCTTTTCGGCATTTC
1 GGCTTTTCGGCATTTC
*
77492817 GGCTTTTCGGGATTT
1 GGCTTTTCGGCATTT
77492832 GTCGATCTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.06, C:0.19, G:0.29, T:0.45
Consensus pattern (16 bp):
GGCTTTTCGGCATTTC
Found at i:77495176 original size:9 final size:9
Alignment explanation
Indices: 77495162--77495247 Score: 122
Period size: 9 Copynumber: 9.6 Consensus size: 9
77495152 ATAAGAATAA
77495162 AATTAACCG
1 AATTAACCG
77495171 AATTAACCG
1 AATTAACCG
*
77495180 AATTAATCG
1 AATTAACCG
77495189 AATTAACCG
1 AATTAACCG
77495198 AATT-ACCTG
1 AATTAACC-G
*
77495207 AATT-ACCC
1 AATTAACCG
77495215 AGATTAACCG
1 A-ATTAACCG
77495225 AATTAACCG
1 AATTAACCG
77495234 AATTAACCG
1 AATTAACCG
77495243 AATTA
1 AATTA
77495248 TTTGTATAAA
Statistics
Matches: 70, Mismatches: 4, Indels: 6
0.88 0.05 0.08
Matches are distributed among these distances:
8 4 0.06
9 62 0.89
10 4 0.06
ACGTcount: A:0.43, C:0.21, G:0.10, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:77501454 original size:46 final size:46
Alignment explanation
Indices: 77501401--77501571 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
77501391 TTGGGCATCC
77501401 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCG
* * * * *
77501447 AACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCGTCCG
* *
77501494 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCG
* *
77501540 AGCTCGTTGAGTTGAGT-CGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77501572 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 14, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
43 4 0.04
45 16 0.15
46 46 0.44
47 32 0.31
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCG
Found at i:77504541 original size:15 final size:15
Alignment explanation
Indices: 77504521--77504589 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
77504511 GTATCTTGGG
77504521 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
77504536 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
77504551 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
77504566 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
77504581 TTTCTTTAT
1 TTTCTTTAT
77504590 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:77504590 original size:30 final size:30
Alignment explanation
Indices: 77504512--77504599 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
77504502 CATAGTATCG
* * * *
77504512 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
77504542 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
77504572 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
77504600 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:77507033 original size:46 final size:46
Alignment explanation
Indices: 77506980--77507155 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
77506970 TATTTGGGCA
77506980 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
77507026 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
77507073 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
77507119 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77507156 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:77507135 original size:93 final size:93
Alignment explanation
Indices: 77506976--77507147 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
77506966 GGGATATTTG
* *
77506976 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
77507041 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
77507069 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
77507134 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
77507148 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:77511334 original size:15 final size:15
Alignment explanation
Indices: 77511306--77511361 Score: 51
Period size: 15 Copynumber: 3.6 Consensus size: 15
77511296 AAAAAAGAGG
* *
77511306 TCCAAGACAGAGAAA
1 TCCAAGATAAAGAAA
77511321 TCCAAGATAAAGAAA
1 TCCAAGATAAAGAAA
*
77511336 CTCCCAAGATTTAA-AAA
1 -T-CCAAGA-TAAAGAAA
77511353 TCCAAGATA
1 TCCAAGATA
77511362 CAATACCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
14 1 0.03
15 19 0.56
16 2 0.06
17 9 0.26
18 3 0.09
ACGTcount: A:0.52, C:0.20, G:0.12, T:0.16
Consensus pattern (15 bp):
TCCAAGATAAAGAAA
Found at i:77514430 original size:20 final size:20
Alignment explanation
Indices: 77514376--77514434 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 20
77514366 TAGCTTGTTC
* *
77514376 AGCTCACAACCAGCTCAGCA
1 AGCTCACATCCAGCTCAACA
** *
77514396 AGCTCAGTTCTAGCTCAACA
1 AGCTCACATCCAGCTCAACA
*
77514416 AGTTCACATCCAGCTCAAC
1 AGCTCACATCCAGCTCAAC
77514435 TCCAGCTCAT
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.32, C:0.36, G:0.14, T:0.19
Consensus pattern (20 bp):
AGCTCACATCCAGCTCAACA
Found at i:77516445 original size:30 final size:30
Alignment explanation
Indices: 77516389--77516547 Score: 204
Period size: 30 Copynumber: 5.5 Consensus size: 30
77516379 ATAGTGAATC
77516389 CGCACACTTAGTGCTATAT-A-TTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
77516417 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
77516447 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
77516476 CGCACACTTAGTGCTGTATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
77516504 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
77516534 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77516548 CAATCTTGTC
Statistics
Matches: 119, Mismatches: 5, Indels: 12
0.88 0.04 0.09
Matches are distributed among these distances:
27 2 0.02
28 42 0.35
29 29 0.24
30 45 0.38
31 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:77516538 original size:87 final size:87
Alignment explanation
Indices: 77516389--77516547 Score: 230
Period size: 87 Copynumber: 1.8 Consensus size: 87
77516379 ATAGTGAATC
* * * * * *
77516389 CGCACACTTAGTGCTATATATTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCTCGCACAC
1 CGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAACCCGCACAC
77516454 TTAGTGCTATATATTTTCAGCT
66 TTAGTGCTATATATTTTCAGCT
* *
77516476 CGCACACTTAGTGCTGTATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAACCCGCACA
1 CGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAACCCGCACA
77516540 CTTAGTGC
65 CTTAGTGC
77516548 CAATCTTGTC
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
86 2 0.03
87 61 0.97
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (87 bp):
CGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAACCCGCACAC
TTAGTGCTATATATTTTCAGCT
Found at i:77524412 original size:30 final size:30
Alignment explanation
Indices: 77524357--77524516 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
77524347 ATAGTGAATC
77524357 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
77524386 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
77524416 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
77524445 CGCACACTTAGTGCTGTATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
77524473 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
77524503 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77524517 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 47 0.39
30 47 0.39
31 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:77524449 original size:59 final size:57
Alignment explanation
Indices: 77524357--77524516 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
77524347 ATAGTGAATC
*
77524357 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
*
77524416 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTGTATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
77524473 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
77524517 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 49 0.53
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:77530634 original size:43 final size:43
Alignment explanation
Indices: 77530571--77530659 Score: 142
Period size: 43 Copynumber: 2.1 Consensus size: 43
77530561 GCAACCAAAG
* * *
77530571 CATAATGATGCCAATCTCCCAGACATGGTCTTACACGTAATCA
1 CATAATGATGCCAATATCCCAGACAGGGTCTTACACATAATCA
*
77530614 CATAATGATGCCAATATCCCAGACAGGGTCTTACACATACTCA
1 CATAATGATGCCAATATCCCAGACAGGGTCTTACACATAATCA
77530657 CAT
1 CAT
77530660 CTCGGTAATC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (43 bp):
CATAATGATGCCAATATCCCAGACAGGGTCTTACACATAATCA
Found at i:77532085 original size:13 final size:13
Alignment explanation
Indices: 77532067--77532092 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
77532057 ATAAGCAACC
77532067 AGTTTGACTCGCT
1 AGTTTGACTCGCT
77532080 AGTTTGACTCGCT
1 AGTTTGACTCGCT
77532093 CAACAATCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (13 bp):
AGTTTGACTCGCT
Found at i:77541641 original size:25 final size:25
Alignment explanation
Indices: 77541612--77541660 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
77541602 TTATAATATG
* * *
77541612 AAAATGACCGTTTTTCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
77541637 AAAATGACCATTATACCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
77541661 TTATACATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:77541785 original size:20 final size:20
Alignment explanation
Indices: 77541695--77541777 Score: 139
Period size: 20 Copynumber: 4.2 Consensus size: 20
77541685 ATTTTGATAA
*
77541695 ACATGATATGTATGGTATGC
1 ACATGATATGTATGATATGC
77541715 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
**
77541735 ACATGCCATGTATGATATGC
1 ACATGATATGTATGATATGC
77541755 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
77541775 ACA
1 ACA
77541778 CGAGATGTTC
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 58 1.00
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:77541919 original size:47 final size:47
Alignment explanation
Indices: 77541831--77541949 Score: 183
Period size: 47 Copynumber: 2.6 Consensus size: 47
77541821 GAGGAAGTGC
77541831 AAAAGGGCTTATG-CCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
*
77541877 -AAAGGGCTTATGCCCCAGTTATGATAAA-GGCTTATGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTAT--TAAAGGGCTTATGCCCCAGTTATT
77541924 AAAAGGGCTT-TGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
77541950 AGAGGCTAGG
Statistics
Matches: 68, Mismatches: 1, Indels: 9
0.87 0.01 0.12
Matches are distributed among these distances:
45 16 0.24
46 9 0.13
47 30 0.44
48 13 0.19
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:77541956 original size:24 final size:24
Alignment explanation
Indices: 77541831--77541970 Score: 184
Period size: 23 Copynumber: 6.0 Consensus size: 24
77541821 GAGGAAGTGC
77541831 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
77541854 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
77541877 -AAAGGGCTTATGCCCCAGTTATG
1 AAAAGGGCTTATGCCCCAGTTATT
*
77541900 ATAAA-GGCTTATGCCCCAGTTGTT
1 A-AAAGGGCTTATGCCCCAGTTATT
77541924 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
77541947 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
77541971 ATGATAAAGC
Statistics
Matches: 105, Mismatches: 5, Indels: 12
0.86 0.04 0.10
Matches are distributed among these distances:
22 12 0.11
23 53 0.50
24 29 0.28
25 11 0.10
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:77542198 original size:31 final size:32
Alignment explanation
Indices: 77542163--77542244 Score: 114
Period size: 31 Copynumber: 2.6 Consensus size: 32
77542153 CGTTTACAGT
77542163 AAAGGCTTCGGCCCAGTAATATGAAATATG-A
1 AAAGGCTTCGGCCCAGTAATATGAAATATGAA
**
77542194 AAAGGCTTCGGCCCAGTGTTATGAAATATGAA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGAA
77542226 AAAGGGCTAT-GGCCCAGTA
1 AAA-GGCT-TCGGCCCAGTA
77542245 CATGTTGAGA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
31 28 0.62
32 4 0.09
33 12 0.27
34 1 0.02
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (32 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGAA
Found at i:77549771 original size:25 final size:25
Alignment explanation
Indices: 77549742--77549789 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
77549732 TTATAATATG
* * *
77549742 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
77549767 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
77549790 GTTTATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:77549851 original size:20 final size:20
Alignment explanation
Indices: 77549826--77549868 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
77549816 ATTTTGATAA
*
77549826 ACATGATATGTATGGTATGC
1 ACATGATATGTATGATATGC
77549846 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
77549866 ACA
1 ACA
77549869 CGAGATGTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:77549876 original size:20 final size:20
Alignment explanation
Indices: 77549833--77549876 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
77549823 TAAACATGAT
* * *
77549833 ATGTATGGTATGCACATGAT
1 ATGTATGATATGCACACGAG
77549853 ATGTATGATATGCACACGAG
1 ATGTATGATATGCACACGAG
77549873 ATGT
1 ATGT
77549877 TCATAAATGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACACGAG
Found at i:77550030 original size:47 final size:47
Alignment explanation
Indices: 77549922--77550041 Score: 192
Period size: 47 Copynumber: 2.6 Consensus size: 47
77549912 GAGGAAGTGC
77549922 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
*
77549969 -AAAGGGCTTATGCCCCAGTTATGATAAA-GGCTTATGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTAT--TAAAGGGCTTATGCCCCAGTTATT
77550016 AAAAGGGCTT-TGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
77550042 AGAGGCTAGG
Statistics
Matches: 69, Mismatches: 1, Indels: 8
0.88 0.01 0.10
Matches are distributed among these distances:
45 4 0.06
46 22 0.32
47 30 0.43
48 13 0.19
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:77550042 original size:23 final size:24
Alignment explanation
Indices: 77549922--77550062 Score: 193
Period size: 23 Copynumber: 6.0 Consensus size: 24
77549912 GAGGAAGTGC
77549922 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
77549946 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
77549969 -AAAGGGCTTATGCCCCAGTTATG
1 AAAAGGGCTTATGCCCCAGTTATT
*
77549992 ATAAA-GGCTTATGCCCCAGTTGTT
1 A-AAAGGGCTTATGCCCCAGTTATT
77550016 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
77550039 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
77550063 ATGATAAAGC
Statistics
Matches: 106, Mismatches: 5, Indels: 11
0.87 0.04 0.09
Matches are distributed among these distances:
23 66 0.62
24 29 0.27
25 11 0.10
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:77550292 original size:31 final size:32
Alignment explanation
Indices: 77550257--77550338 Score: 114
Period size: 31 Copynumber: 2.6 Consensus size: 32
77550247 CGTTTACAGT
77550257 AAAGGCTTCGGCCCAGTAATATGAAATATG-A
1 AAAGGCTTCGGCCCAGTAATATGAAATATGAA
**
77550288 AAAGGCTTCGGCCCAGTGTTATGAAATATGAA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGAA
77550320 AAAGGGCTAT-GGCCCAGTA
1 AAA-GGCT-TCGGCCCAGTA
77550339 CATGTTGAGA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
31 28 0.62
32 4 0.09
33 12 0.27
34 1 0.02
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (32 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGAA
Found at i:77558618 original size:70 final size:71
Alignment explanation
Indices: 77558467--77558629 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
77558457 GAGATGTATC
77558467 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
77558532 AGGACA
66 AGGACA
77558538 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
77558602 CGGACA
66 AGGACA
77558608 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
77558630 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:77564946 original size:71 final size:71
Alignment explanation
Indices: 77564858--77565021 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
77564848 GAGATGTATC
77564858 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
77564923 AGGACA
66 AGGACA
*
77564929 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
77564994 CGGACA
66 AGGACA
77565000 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
77565022 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:77567446 original size:33 final size:33
Alignment explanation
Indices: 77567408--77567475 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
77567398 TAGGGAGATG
77567408 ATGAATGAAATAAATGGCCTTTTGTTTTTATTA
1 ATGAATGAAATAAATGGCCTTTTGTTTTTATTA
77567441 ATGAATGAAATAAATGGCCTTTTGTTTTTATTA
1 ATGAATGAAATAAATGGCCTTTTGTTTTTATTA
77567474 AT
1 AT
77567476 TTATCATTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.34, C:0.06, G:0.15, T:0.46
Consensus pattern (33 bp):
ATGAATGAAATAAATGGCCTTTTGTTTTTATTA
Found at i:77570721 original size:27 final size:27
Alignment explanation
Indices: 77570393--77570705 Score: 419
Period size: 27 Copynumber: 11.6 Consensus size: 27
77570383 AACACCTTAG
** * *
77570393 GGGTAAAATGGTAATTTTATAAATCAA
1 GGGTAAAACAGTAATTCTATAAATCGA
* * *
77570420 AGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGA
* * *
77570447 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGA
*
77570474 GGGTAAAATAGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGA
77570501 GGGTAAAACAGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGA
*
77570528 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGA
* *
77570555 AGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGA
* *
77570582 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGA
* *
77570609 GGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGA
* *
77570636 GGGTAAAACAGTAATTCTGTAAATCTA
1 GGGTAAAACAGTAATTCTATAAATCGA
* *
77570663 GGGTAAAAAAGTAATTCTATAAATTGA
1 GGGTAAAACAGTAATTCTATAAATCGA
*
77570690 GGGTAAAACGGTAATT
1 GGGTAAAACAGTAATT
77570706 TTGTAATTTG
Statistics
Matches: 258, Mismatches: 28, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 258 1.00
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
GGGTAAAACAGTAATTCTATAAATCGA
Found at i:77570761 original size:27 final size:27
Alignment explanation
Indices: 77570715--77570846 Score: 104
Period size: 27 Copynumber: 4.9 Consensus size: 27
77570705 TTTGTAATTT
* * * *
77570715 GAGGGTACTTTGATAGTTTTACAAGTC
1 GAGGGTATTTTGGTAATTTTACAAATC
* *
77570742 GAGGGTATTTTAGTAATTTTGCAAA-C
1 GAGGGTATTTTGGTAATTTTACAAATC
* *
77570768 TGAGGGTATTTCGATAATTTTACAAATC
1 -GAGGGTATTTTGGTAATTTTACAAATC
* * * * * *
77570796 AAAGATATTTGGGTAATTTTATAAACC
1 GAGGGTATTTTGGTAATTTTACAAATC
* *
77570823 GGGGGTACTTTGGTAATTTTACAA
1 GAGGGTATTTTGGTAATTTTACAA
77570847 CTGGGGATAT
Statistics
Matches: 79, Mismatches: 24, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
26 1 0.01
27 77 0.97
28 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (27 bp):
GAGGGTATTTTGGTAATTTTACAAATC
Found at i:77570805 original size:54 final size:54
Alignment explanation
Indices: 77570700--77570846 Score: 152
Period size: 54 Copynumber: 2.7 Consensus size: 54
77570690 GGGTAAAACG
** * * * * * *
77570700 GTAATTTTGTAATTTGAGGGTACTTTGATAGTTTTACAAGTCGAGGGTATTTTA
1 GTAATTTTGTAAACTGAGGGTACTTTGATAATTTTACAAATCAAAGATATTTGA
* *
77570754 GTAATTTTGCAAACTGAGGGTA-TTTCGATAATTTTACAAATCAAAGATATTTGG
1 GTAATTTTGTAAACTGAGGGTACTTT-GATAATTTTACAAATCAAAGATATTTGA
* * * *
77570808 GTAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAA
1 GTAATTTTGTAAACTGAGGGTACTTTGATAATTTTACAA
77570847 CTGGGGATAT
Statistics
Matches: 76, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
53 3 0.04
54 70 0.92
55 3 0.04
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (54 bp):
GTAATTTTGTAAACTGAGGGTACTTTGATAATTTTACAAATCAAAGATATTTGA
Found at i:77570886 original size:27 final size:27
Alignment explanation
Indices: 77570854--77570920 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
77570844 CAACTGGGGA
77570854 TATTTCAGTAATTCTACCCTAC-AGAGG
1 TATTTCAGTAATTCTACCCTACAAGA-G
* *
77570881 TATTTCGGTATTTCTACCCTACAAGAG
1 TATTTCAGTAATTCTACCCTACAAGAG
77570908 TATTTCAGTAATT
1 TATTTCAGTAATT
77570921 TTACAAATCG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.91
28 3 0.09
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.39
Consensus pattern (27 bp):
TATTTCAGTAATTCTACCCTACAAGAG
Found at i:77574671 original size:49 final size:49
Alignment explanation
Indices: 77574598--77574785 Score: 250
Period size: 49 Copynumber: 3.8 Consensus size: 49
77574588 TAGCCAAAGC
*
77574598 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * *
77574647 AATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * *
77574698 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* **
77574747 TATCCGGTACATGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
77574786 CGTGACCTCA
Statistics
Matches: 118, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 76 0.64
50 2 0.02
51 40 0.34
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:77574717 original size:100 final size:100
Alignment explanation
Indices: 77574603--77574790 Score: 349
Period size: 100 Copynumber: 1.9 Consensus size: 100
77574593 AAAGCTATCT
*
77574603 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
77574668 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
* *
77574703 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
77574768 TGCACTTAGTACTACACACGTGA
66 TGCACTTAGTACTACACACGTGA
77574791 CCTCACAATA
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 85 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:77577004 original size:15 final size:15
Alignment explanation
Indices: 77576948--77577012 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
77576938 TAAAGATAAC
*
77576948 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
77576962 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
77576977 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
77576992 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
77577007 AAGAAA
1 AAGAAA
77577013 CCCAAGATAC
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 11 0.26
15 29 0.67
16 3 0.07
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:77577014 original size:30 final size:31
Alignment explanation
Indices: 77576948--77577016 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
77576938 TAAAGATAAC
*
77576948 AAGAAAACC-GAATAAAGAAATCCAAGATAG
1 AAGAAACCCAGAATAAAGAAATCCAAGATAG
77576978 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATAG
77577007 AAGAAACCCA
1 AAGAAACCCA
77577017 AGATACGATA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 9 0.26
30 26 0.74
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.09
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATAG
Found at i:77580086 original size:49 final size:49
Alignment explanation
Indices: 77580026--77580207 Score: 220
Period size: 49 Copynumber: 3.7 Consensus size: 49
77580016 CTGGTACGCA
* * * *
77580026 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATAATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACG
* * * *
77580075 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCAGGTACACG
** * * * *
77580126 TAGTAGTATGCACTTAGCACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACG
77580175 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
77580208 TCACAATAGT
Statistics
Matches: 108, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
49 70 0.65
50 2 0.02
51 36 0.33
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACG
Found at i:77580138 original size:100 final size:100
Alignment explanation
Indices: 77580018--77580205 Score: 313
Period size: 100 Copynumber: 1.9 Consensus size: 100
77580008 GAAGCTATCT
* * * * *
77580018 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAATAATCTGGTACATGTAGTAGCC
1 GGTACGCATAGTAGCATGCACTTAGCACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
77580083 TGCACTTAGTACTACACACGTGATCACAGTTTTCA
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCA
* *
77580118 GGTACGCATAGTAGTATGCACTTAGCACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCATGCACTTAGCACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
77580183 TGCACTTAGTACTACACACGTGA
66 TGCACTTAGTACTACACACGTGA
77580206 CCTCACAATA
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 81 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCATGCACTTAGCACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCACAGTTTTCA
Found at i:77586802 original size:34 final size:34
Alignment explanation
Indices: 77586759--77586836 Score: 104
Period size: 34 Copynumber: 2.3 Consensus size: 34
77586749 AGTGACAGTC
* *
77586759 CAATATCAGTGTAGGCCTTAGCCCA-TAGCAGTAG
1 CAATATCAGTGTAGGCCTCAGCCCATTA-CAGTAA
*
77586793 CAATATCAGTGTGGGCCTCAGCCCATTACAGTAA
1 CAATATCAGTGTAGGCCTCAGCCCATTACAGTAA
*
77586827 CAGTATCAGT
1 CAATATCAGT
77586837 AATGCAATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
34 37 0.95
35 2 0.05
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (34 bp):
CAATATCAGTGTAGGCCTCAGCCCATTACAGTAA
Found at i:77589083 original size:20 final size:19
Alignment explanation
Indices: 77589054--77589122 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 19
77589044 ATTAGAATGT
77589054 AAAA-ATTAAATTAAAAACA
1 AAAATATTAAATTAAAAA-A
*
77589073 AAAATATTAAAATAAAAATA
1 AAAATATTAAATTAAAAA-A
*
77589093 AAATATGACTAAATTAATAAAA
1 AAA-AT-ATTAAATTAA-AAAA
*
77589115 ATAATATT
1 AAAATATT
77589123 TTCCTAATAT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
19 4 0.10
20 18 0.45
21 4 0.10
22 11 0.28
23 3 0.08
ACGTcount: A:0.68, C:0.03, G:0.01, T:0.28
Consensus pattern (19 bp):
AAAATATTAAATTAAAAAA
Found at i:77594313 original size:59 final size:60
Alignment explanation
Indices: 77594189--77594320 Score: 137
Period size: 59 Copynumber: 2.2 Consensus size: 60
77594179 TAGTTTTAAT
* * ** *
77594189 ATTAAATTTAATTTAATATTTATATTATAGATAAGTATTCTATTAATTTAATAGATTTTAT
1 ATTAAATTTAATCTAATATTTATATTATAGATAAGTATTATATTAATTTAATA-ATTAGAA
*
77594250 ATTAAATTTTAATCTGATATTTAT-TT-T-GATAAGTATTATATTAATTTAAT-ATTAAAGAA
1 ATTAAA-TTTAATCTAATATTTATATTATAGATAAGTATTATATTAATTTAATAATT--AGAA
*
77594309 ATTAAGTTTAAT
1 ATTAAATTTAAT
77594321 TATAGTTTAA
Statistics
Matches: 61, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
57 3 0.05
58 6 0.10
59 28 0.46
60 1 0.02
61 8 0.13
62 15 0.25
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.51
Consensus pattern (60 bp):
ATTAAATTTAATCTAATATTTATATTATAGATAAGTATTATATTAATTTAATAATTAGAA
Found at i:77596487 original size:28 final size:28
Alignment explanation
Indices: 77596394--77596501 Score: 94
Period size: 28 Copynumber: 3.8 Consensus size: 28
77596384 GACTGTAAAT
* * *
77596394 GTGATTTGGGCCTAGT-GTCCATATGAAT
1 GTGA-TTGGGCCTAATGGGCCATATGAAA
*
77596422 GTGATTTGGGCCTAATGGGCCACAT-AAA
1 GTGA-TTGGGCCTAATGGGCCATATGAAA
* *
77596450 TGTGAATGGGCTTAATGGGCCATATGAAA
1 -GTGATTGGGCCTAATGGGCCATATGAAA
* * *
77596479 GAGATTGGGCCTAGTGGGACATA
1 GTGATTGGGCCTAATGGGCCATA
77596502 CATATATAGG
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
28 52 0.80
29 13 0.20
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.28
Consensus pattern (28 bp):
GTGATTGGGCCTAATGGGCCATATGAAA
Found at i:77600887 original size:28 final size:28
Alignment explanation
Indices: 77600823--77600893 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
77600813 AAACTGGGGG
* * * *
77600823 TATTTTGGTAATTTT-ACAAACTAAGGG
1 TATTTCGGTAATTTTAAAAAAATAAGGA
*
77600850 TATTTCGGTAATTTTAAAAAAATGAGGA
1 TATTTCGGTAATTTTAAAAAAATAAGGA
77600878 TATTTCGGTAATTTTA
1 TATTTCGGTAATTTTA
77600894 CAAATTGGGG
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
27 14 0.37
28 24 0.63
ACGTcount: A:0.35, C:0.06, G:0.17, T:0.42
Consensus pattern (28 bp):
TATTTCGGTAATTTTAAAAAAATAAGGA
Found at i:77600889 original size:55 final size:55
Alignment explanation
Indices: 77600770--77600897 Score: 154
Period size: 55 Copynumber: 2.4 Consensus size: 55
77600760 CCTACAGGGG
** * * * * *
77600770 TATTTCGGTAATTTTAC--ACTAAAGGGTATTTTTGTTATTTTACAAACTGGGGG
1 TATTTCGGTAATTTTACAAACTAAAGGGTATTTCGGTAATTTTAAAAAATGAGGA
*
77600823 TATTTTGGTAATTTTACAAACT-AAGGGTATTTCGGTAATTTTAAAAAAATGAGGA
1 TATTTCGGTAATTTTACAAACTAAAGGGTATTTCGGTAATTTT-AAAAAATGAGGA
77600878 TATTTCGGTAATTTTACAAA
1 TATTTCGGTAATTTTACAAA
77600898 TTGGGGGTAT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
53 16 0.25
54 17 0.27
55 30 0.48
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.41
Consensus pattern (55 bp):
TATTTCGGTAATTTTACAAACTAAAGGGTATTTCGGTAATTTTAAAAAATGAGGA
Found at i:77600918 original size:27 final size:27
Alignment explanation
Indices: 77600767--77600909 Score: 146
Period size: 27 Copynumber: 5.3 Consensus size: 27
77600757 TACCCTACAG
*
77600767 GGGTATTTCGGTAATTTTAC--ACTAAA
1 GGGTATTTCGGTAATTTTACAAACT-GA
** * *
77600793 GGGTATTTTTGTTATTTTACAAACTGG
1 GGGTATTTCGGTAATTTTACAAACTGA
* *
77600820 GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTCGGTAATTTTACAAACTGA
* *
77600847 GGGTATTTCGGTAATTTTAAAAAAATGA
1 GGGTATTTCGGTAATTTT-ACAAACTGA
* * *
77600875 GGATATTTCGGTAATTTTACAAATTGG
1 GGGTATTTCGGTAATTTTACAAACTGA
77600902 GGGTATTT
1 GGGTATTT
77600910 TCATAATTTA
Statistics
Matches: 96, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
26 17 0.18
27 53 0.55
28 26 0.27
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAACTGA
Found at i:77602277 original size:12 final size:12
Alignment explanation
Indices: 77602262--77602326 Score: 51
Period size: 12 Copynumber: 5.4 Consensus size: 12
77602252 CCTTAAATCT
77602262 CTCCATAATTCA
1 CTCCATAATTCA
* **
77602274 CTCCTTAATTTT
1 CTCCATAATTCA
*
77602286 CTCC-TAATATCT
1 CTCCATAAT-TCA
* *
77602298 CTCCATGATACA
1 CTCCATAATTCA
*
77602310 CTCCATAAATCA
1 CTCCATAATTCA
77602322 CTCCA
1 CTCCA
77602327 ACCTTCCATT
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
11 4 0.10
12 34 0.83
13 3 0.07
ACGTcount: A:0.29, C:0.34, G:0.02, T:0.35
Consensus pattern (12 bp):
CTCCATAATTCA
Found at i:77602298 original size:36 final size:37
Alignment explanation
Indices: 77602244--77602313 Score: 99
Period size: 36 Copynumber: 1.9 Consensus size: 37
77602234 TAAAATCCAT
*
77602244 ATTTTCCTCCTTAAATCTCTCCATAATTCACTCCTTA
1 ATTTTCCTCCTTAAATCTCTCCATAATACACTCCTTA
*
77602281 ATTTT-CTCC-TAATATCTCTCCATGATACACTCC
1 ATTTTCCTCCTTAA-ATCTCTCCATAATACACTCC
77602314 ATAAATCACT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
35 3 0.10
36 22 0.73
37 5 0.17
ACGTcount: A:0.24, C:0.33, G:0.01, T:0.41
Consensus pattern (37 bp):
ATTTTCCTCCTTAAATCTCTCCATAATACACTCCTTA
Found at i:77603020 original size:7 final size:7
Alignment explanation
Indices: 77603010--77603070 Score: 77
Period size: 7 Copynumber: 8.7 Consensus size: 7
77603000 ATAATGGAGA
77603010 ATTGAGG
1 ATTGAGG
77603017 ATTGAGG
1 ATTGAGG
*
77603024 ATTGGGG
1 ATTGAGG
*
77603031 ATTGGGG
1 ATTGAGG
*
77603038 ATTGGGG
1 ATTGAGG
77603045 ATTGAGG
1 ATTGAGG
77603052 ATTGAGG
1 ATTGAGG
* *
77603059 GTTGAGA
1 ATTGAGG
77603066 ATTGA
1 ATTGA
77603071 AAATTGAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 49 1.00
ACGTcount: A:0.25, C:0.00, G:0.46, T:0.30
Consensus pattern (7 bp):
ATTGAGG
Found at i:77604198 original size:63 final size:63
Alignment explanation
Indices: 77604099--77604225 Score: 245
Period size: 63 Copynumber: 2.0 Consensus size: 63
77604089 GAAATGTAAG
77604099 ACATTAAATCTCAACTTTAACTAGTGAGTTTCTAATAAACAATTTTCATAAAGAACAAGCAAC
1 ACATTAAATCTCAACTTTAACTAGTGAGTTTCTAATAAACAATTTTCATAAAGAACAAGCAAC
*
77604162 ACATTAAATCTCAACTTTAACTAGTGAGTTTCTAATAAACAATTTTCATTAAGAACAAGCAAC
1 ACATTAAATCTCAACTTTAACTAGTGAGTTTCTAATAAACAATTTTCATAAAGAACAAGCAAC
77604225 A
1 A
77604226 AATGAGAATT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.31
Consensus pattern (63 bp):
ACATTAAATCTCAACTTTAACTAGTGAGTTTCTAATAAACAATTTTCATAAAGAACAAGCAAC
Found at i:77605560 original size:3 final size:3
Alignment explanation
Indices: 77605552--77605611 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
77605542 TAAAGATATA
77605552 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
77605600 CTT CTT CTT CTT
1 CTT CTT CTT CTT
77605612 TTTGCTTTGA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:77607087 original size:51 final size:50
Alignment explanation
Indices: 77607010--77607186 Score: 239
Period size: 51 Copynumber: 3.5 Consensus size: 50
77607000 CGGATACCCG
* * * *
77607010 GTGGCCTGCACATAGTACCACCCTTGTAGTCAAAGTTACCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GACAAAGCTACCTTCTTCACAAA
* * *
77607061 GTGGCCTTCACATAGTACCACACTTGTGACCAAGCTATCTTTCATCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACAAAGCTA-CCTTCTTCACAAA
* * *
77607112 GTGGCCTTCACATATTACCACACTTGTGACAAAGCTATC-TCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACAAAGCTACCTTCTTCACAAA
77607161 GTGGCCTTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
77607187 ACTTGAGTCA
Statistics
Matches: 111, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
49 33 0.30
50 7 0.06
51 71 0.64
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (50 bp):
GTGGCCTTCACATAGTACCACACTTGTGACAAAGCTACCTTCTTCACAAA
Found at i:77614535 original size:89 final size:88
Alignment explanation
Indices: 77614378--77614549 Score: 290
Period size: 89 Copynumber: 1.9 Consensus size: 88
77614368 GACTTGTTTG
* *
77614378 ATCAGTTGAAATGAGCTGTTGTGTTTTCGAAAATAGATTTGAGATCGGGCTATTATCAATTGCGA
1 ATCAGTTGAAATGAGCTGTTGTGTTTTCAAAAATAGATTTGAGATCGGGCTATTATCAATTACGA
*
77614443 GTAAAAGACTCAGACATTTCGAA
66 GTAAAAGACTCAAACATTTCGAA
* *
77614466 ATCAGTTGAAATGAGCTGTTGTGATTTTCAAAAATAGATTTGAGATTGGGCTATTATCAATTACT
1 ATCAGTTGAAATGAGCTGTTGTG-TTTTCAAAAATAGATTTGAGATCGGGCTATTATCAATTACG
77614531 AGTAAAAGACTCAAACATT
65 AGTAAAAGACTCAAACATT
77614550 CCAGAAACTG
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
88 23 0.29
89 55 0.71
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (88 bp):
ATCAGTTGAAATGAGCTGTTGTGTTTTCAAAAATAGATTTGAGATCGGGCTATTATCAATTACGA
GTAAAAGACTCAAACATTTCGAA
Found at i:77618982 original size:46 final size:46
Alignment explanation
Indices: 77618915--77619182 Score: 275
Period size: 46 Copynumber: 5.8 Consensus size: 46
77618905 TGTAACCCGC
* *
77618915 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCACTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCACTCGCAT
*
77618961 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--GCACTCG---CAT
* * * *
77619011 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCACTCGCAT
*
77619054 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--GCACTCG---CAT
* *
77619104 CTCAT-A---AACTTGGACTCAACTCAACGAGTTCGGGCATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCACTCGCAT
*
77619147 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
77619183 ATGCCTAAAT
Statistics
Matches: 184, Mismatches: 18, Indels: 40
0.76 0.07 0.17
Matches are distributed among these distances:
42 3 0.02
43 8 0.04
44 1 0.01
45 5 0.03
46 91 0.49
47 59 0.32
48 5 0.03
49 1 0.01
50 8 0.04
51 3 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCACTCGCAT
Found at i:77619030 original size:93 final size:93
Alignment explanation
Indices: 77618922--77619189 Score: 473
Period size: 93 Copynumber: 2.9 Consensus size: 93
77618912 CGCCCATAAG
* *
77618922 CGAACTCGGACTCAACTCAACGAGCTCGGGCACTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
77618987 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
77619015 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
77619080 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
** * *
77619108 TAAACTTGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
77619173 ACGAGTTCGGATGCCTA
66 ACGAGTTCGGATGCCTA
77619190 AATATCCTAA
Statistics
Matches: 167, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 167 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Done.