Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 27 of 444
Found at i:6907682 original size:14 final size:14
Alignment explanation
Indices: 6907663--6907698 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
6907653 TTATATTATT
*
6907663 TATTATATGATTTA
1 TATTATATAATTTA
*
6907677 TATTATTTAATTTA
1 TATTATATAATTTA
6907691 TATTATAT
1 TATTATAT
6907699 TTTACTATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (14 bp):
TATTATATAATTTA
Found at i:6912188 original size:10 final size:10
Alignment explanation
Indices: 6912175--6912199 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
6912165 TATTACAAAA
6912175 AAAATTCTTT
1 AAAATTCTTT
6912185 AAAATTCTTT
1 AAAATTCTTT
6912195 AAAAT
1 AAAAT
6912200 ACCAAAAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (10 bp):
AAAATTCTTT
Found at i:6916855 original size:2 final size:2
Alignment explanation
Indices: 6916850--6916896 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
6916840 CTCAATTTAA
6916850 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6916892 AT AT A
1 AT AT A
6916897 ACCACTTAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6918305 original size:19 final size:19
Alignment explanation
Indices: 6918281--6918319 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
6918271 TAAGAAAAAA
6918281 AGACTTAAAATTGTTTACC
1 AGACTTAAAATTGTTTACC
6918300 AGACTTAAAATTGTTTACC
1 AGACTTAAAATTGTTTACC
6918319 A
1 A
6918320 ATTGATGGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.36
Consensus pattern (19 bp):
AGACTTAAAATTGTTTACC
Found at i:6918470 original size:15 final size:16
Alignment explanation
Indices: 6918447--6918481 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
6918437 CTAATCATAA
*
6918447 TTAATTTAATTAAACT
1 TTAATTTAATAAAACT
6918463 TTAA-TTAATAAAACT
1 TTAATTTAATAAAACT
6918478 TTAA
1 TTAA
6918482 GCTTAATTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (16 bp):
TTAATTTAATAAAACT
Found at i:6918644 original size:23 final size:23
Alignment explanation
Indices: 6918618--6918664 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
6918608 TCAAAATGTA
*
6918618 AAATAGTACTATATTAA-ATTTAT
1 AAATAGTAATAT-TTAATATTTAT
*
6918641 AAATATTAATATTTAATATTTAT
1 AAATAGTAATATTTAATATTTAT
6918664 A
1 A
6918665 GATTGGGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 4 0.19
23 17 0.81
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
AAATAGTAATATTTAATATTTAT
Found at i:6927855 original size:25 final size:26
Alignment explanation
Indices: 6927814--6927863 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
6927804 TAATATTACA
*
6927814 TAAAGATATACTTATATAT-ATATAT
1 TAAAGATATACTCATATATGATATAT
6927839 TAAAGATATA-TGCATATATGATATA
1 TAAAGATATACT-CATATATGATATA
6927864 ATACATGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 1 0.05
25 16 0.73
26 5 0.23
ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40
Consensus pattern (26 bp):
TAAAGATATACTCATATATGATATAT
Found at i:6928422 original size:3 final size:3
Alignment explanation
Indices: 6928348--6928407 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
6928338 ACAAAAGCAC
6928348 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6928396 ATA ATA ATA ATA
1 ATA ATA ATA ATA
6928408 TCAATATCAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:6929311 original size:35 final size:35
Alignment explanation
Indices: 6929265--6929333 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
6929255 GGGTGTGTGA
*
6929265 TGGTGCTGGTGGTAGACAGCATGGGAGAGTGGGAG
1 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGAG
*
6929300 TGGTGCTGGTGGCAGATAGCATGGGAGAGTGGGA
1 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
6929334 AGAGGCAAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.20, C:0.09, G:0.51, T:0.20
Consensus pattern (35 bp):
TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGAG
Found at i:6933003 original size:21 final size:21
Alignment explanation
Indices: 6932977--6933017 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
6932967 TCGCACAATC
*
6932977 AAAATACTTA-AAACATTTTAG
1 AAAATA-TTATAAAAATTTTAG
6932998 AAAATATTATAAAAATTTTA
1 AAAATATTATAAAAATTTTA
6933018 AAACCATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (21 bp):
AAAATATTATAAAAATTTTAG
Found at i:6933066 original size:22 final size:21
Alignment explanation
Indices: 6933027--6933067 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
6933017 AAAACCATTA
*
6933027 AAAATCCAAAAAAGAAATCAT
1 AAAATCCAAAAAAAAAATCAT
*
6933048 AAAATGCAAAAAATAAAATC
1 AAAATCCAAAAAA-AAAATC
6933068 TTAAGACTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.68, C:0.12, G:0.05, T:0.15
Consensus pattern (21 bp):
AAAATCCAAAAAAAAAATCAT
Found at i:6939512 original size:23 final size:24
Alignment explanation
Indices: 6939466--6939536 Score: 117
Period size: 23 Copynumber: 3.0 Consensus size: 24
6939456 AAATTTAATT
6939466 TTTTTAATTTTAAATCAAAATTTA
1 TTTTTAATTTTAAATCAAAATTTA
**
6939490 TTTTTAATTTTAAAT-AATCTTTA
1 TTTTTAATTTTAAATCAAAATTTA
6939513 TTTTTAATTTTAAATCAAAATTTA
1 TTTTTAATTTTAAATCAAAATTTA
6939537 AAAATTTTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
23 21 0.50
24 21 0.50
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.56
Consensus pattern (24 bp):
TTTTTAATTTTAAATCAAAATTTA
Found at i:6941254 original size:16 final size:16
Alignment explanation
Indices: 6941233--6941263 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6941223 TTTTAAAAAA
6941233 TAATTATACTATTTAT
1 TAATTATACTATTTAT
*
6941249 TAATTATACTTTTTA
1 TAATTATACTATTTA
6941264 AAAATAAGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.58
Consensus pattern (16 bp):
TAATTATACTATTTAT
Found at i:6941722 original size:2 final size:2
Alignment explanation
Indices: 6941715--6941762 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
6941705 AAACTAGTCC
6941715 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6941757 AT AT AT
1 AT AT AT
6941763 TAAACAATTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6945310 original size:18 final size:18
Alignment explanation
Indices: 6945289--6945643 Score: 248
Period size: 18 Copynumber: 19.3 Consensus size: 18
6945279 GAACAATTGT
*
6945289 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAATCAG
* *
6945307 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAG
* * *
6945325 TTATTCAATAATAACCAG
1 TTATTCAGTAACAATCAG
*
6945343 TTATTCAGTAACGATCAATTGATCGG
1 TTATTCAGT-A--A-C-A---ATCAG
* * *
6945369 TTATCCAGTAATAATCAA
1 TTATTCAGTAACAATCAG
*
6945387 TTATTTAGTAA-AATCAG
1 TTATTCAGTAACAATCAG
* * *
6945404 ATATTCAGTAGCAATTAAG
1 TTATTCAGTAACAA-TCAG
* * *
6945423 TTATTCGGTAACAGTCAT
1 TTATTCAGTAACAATCAG
*
6945441 TTATTCAGTGACAATCAG
1 TTATTCAGTAACAATCAG
* *
6945459 TTATTCAGTAATAATCAT
1 TTATTCAGTAACAATCAG
* *
6945477 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAATCAG
*
6945495 TTATTCAGTAACAGTCTA-
1 TTATTCAGTAACAATC-AG
* * *
6945513 TTATCCAGTAACAGTCAT
1 TTATTCAGTAACAATCAG
*
6945531 TTATTCAGTGACAATCAG
1 TTATTCAGTAACAATCAG
* *
6945549 TTATTCAGTAATAATCAT
1 TTATTCAGTAACAATCAG
* *
6945567 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAATCAG
*
6945585 TTATTCAGTAACAGTCTA-
1 TTATTCAGTAACAATC-AG
* * *
6945603 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAATCAG
* * *
6945621 TTATTTAGAAATAATCAG
1 TTATTCAGTAACAATCAG
6945639 TTATT
1 TTATT
6945644 TTATACCTTT
Statistics
Matches: 264, Mismatches: 59, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
17 15 0.06
18 217 0.82
19 16 0.06
21 2 0.01
23 2 0.01
25 1 0.00
26 11 0.04
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37
Consensus pattern (18 bp):
TTATTCAGTAACAATCAG
Found at i:6945524 original size:90 final size:90
Alignment explanation
Indices: 6945368--6945643 Score: 394
Period size: 90 Copynumber: 3.1 Consensus size: 90
6945358 CAATTGATCG
* * * * * * * * *
6945368 GTTATCCAGTAATAATCAATTATTTAGTAA-AATCAGATATTCAGTAGCAAT-TAAGTTATTCGG
1 GTTATTCAGTAATAATCATTTATTCAGTAATATTCAGTTATTCAGTAACAGTCT-A-TTATCCAG
6945431 TAACAGTCATTTATTCAGTGACAATCA
64 TAACAGTCATTTATTCAGTGACAATCA
6945458 GTTATTCAGTAATAATCATTTATTCAGTAATATTCAGTTATTCAGTAACAGTCTATTATCCAGTA
1 GTTATTCAGTAATAATCATTTATTCAGTAATATTCAGTTATTCAGTAACAGTCTATTATCCAGTA
6945523 ACAGTCATTTATTCAGTGACAATCA
66 ACAGTCATTTATTCAGTGACAATCA
6945548 GTTATTCAGTAATAATCATTTATTCAGTAATATTCAGTTATTCAGTAACAGTCTATTATCCAGTA
1 GTTATTCAGTAATAATCATTTATTCAGTAATATTCAGTTATTCAGTAACAGTCTATTATCCAGTA
* * ** *
6945613 ACAGTCAATTATTTAGAAATAATCA
66 ACAGTCATTTATTCAGTGACAATCA
6945638 GTTATT
1 GTTATT
6945644 TTATACCTTT
Statistics
Matches: 170, Mismatches: 14, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
90 151 0.89
91 18 0.11
92 1 0.01
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (90 bp):
GTTATTCAGTAATAATCATTTATTCAGTAATATTCAGTTATTCAGTAACAGTCTATTATCCAGTA
ACAGTCATTTATTCAGTGACAATCA
Found at i:6945906 original size:6 final size:6
Alignment explanation
Indices: 6945895--6945921 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
6945885 TGCCGAATCG
6945895 GTAACA GTAACA GTAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTA
6945922 GTCGGCACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:6945921 original size:51 final size:45
Alignment explanation
Indices: 6945807--6945915 Score: 191
Period size: 45 Copynumber: 2.4 Consensus size: 45
6945797 ACAAATCCGG
*
6945807 AACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCGAT
1 AACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGAT
* *
6945852 AACGGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGGT
1 AACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGAT
6945897 AACAGTAACAGTAACAGTA
1 AACAGTAACAGTAACAGTA
6945916 ACAGTAGTCG
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 60 1.00
ACGTcount: A:0.44, C:0.20, G:0.17, T:0.18
Consensus pattern (45 bp):
AACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGAT
Found at i:6947155 original size:18 final size:17
Alignment explanation
Indices: 6947132--6947177 Score: 60
Period size: 15 Copynumber: 2.8 Consensus size: 17
6947122 CTGTTTCTTC
6947132 TCTGTTTCATTTCCACAT
1 TCTGTTTC-TTTCCACAT
*
6947150 TCTGTTTCTTT--TCAT
1 TCTGTTTCTTTCCACAT
6947165 TCTGTTTCTTTCC
1 TCTGTTTCTTTCC
6947178 TTTATTTCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 14 0.56
17 3 0.12
18 8 0.32
ACGTcount: A:0.09, C:0.26, G:0.07, T:0.59
Consensus pattern (17 bp):
TCTGTTTCTTTCCACAT
Found at i:6957257 original size:24 final size:23
Alignment explanation
Indices: 6957213--6957257 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
6957203 TGACGACAAT
*
6957213 ATTAGGATAAATATTAGATTAAC
1 ATTAGGATAAATATCAGATTAAC
* *
6957236 ATTAGAGATTAATATCATATTA
1 ATTAG-GATAAATATCAGATTA
6957258 GGAGATTAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 5 0.28
24 13 0.72
ACGTcount: A:0.47, C:0.04, G:0.11, T:0.38
Consensus pattern (23 bp):
ATTAGGATAAATATCAGATTAAC
Found at i:6962753 original size:2 final size:2
Alignment explanation
Indices: 6962746--6962786 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
6962736 TATGTACATA
*
6962746 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT AC A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6962786 A
1 A
6962787 CCTATATTAG
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
1 2 0.06
2 34 0.94
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:6962948 original size:22 final size:24
Alignment explanation
Indices: 6962899--6962987 Score: 73
Period size: 23 Copynumber: 3.8 Consensus size: 24
6962889 AGTATTAGAA
*
6962899 ATATACGT-ACAATAGTATAAAAGAT
1 ATATACATAACAATA-TAT-AAAGAT
6962924 ATATAACA-AACAATAT-TAAAG-T
1 ATAT-ACATAACAATATATAAAGAT
6962946 ATATACATAACAATATATAAA-AT
1 ATATACATAACAATATATAAAGAT
* *
6962969 ATGATA-TTAAAAATATATA
1 AT-ATACATAACAATATATA
6962988 TACATAATAA
Statistics
Matches: 55, Mismatches: 3, Indels: 14
0.76 0.04 0.19
Matches are distributed among these distances:
21 3 0.05
22 13 0.24
23 22 0.40
24 4 0.07
25 5 0.09
26 8 0.15
ACGTcount: A:0.57, C:0.07, G:0.06, T:0.30
Consensus pattern (24 bp):
ATATACATAACAATATATAAAGAT
Found at i:6962975 original size:26 final size:24
Alignment explanation
Indices: 6962899--6962967 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 24
6962889 AGTATTAGAA
*
6962899 ATATACGT-ACAATAGTATAAAAGAT
1 ATATACATAACAATA-TATAAAA-AT
*
6962924 ATATAACA-AACAATAT-T-AAAGT
1 ATAT-ACATAACAATATATAAAAAT
6962946 ATATACATAACAATATATAAAA
1 ATATACATAACAATATATAAAA
6962968 TATGATATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
21 3 0.08
22 13 0.35
23 4 0.11
24 4 0.11
25 5 0.14
26 8 0.22
ACGTcount: A:0.58, C:0.09, G:0.06, T:0.28
Consensus pattern (24 bp):
ATATACATAACAATATATAAAAAT
Found at i:6963008 original size:2 final size:2
Alignment explanation
Indices: 6963003--6963032 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
6962993 AATAACATGA
6963003 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6963033 GTGTTAGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:6965277 original size:45 final size:45
Alignment explanation
Indices: 6965213--6965302 Score: 110
Period size: 45 Copynumber: 2.0 Consensus size: 45
6965203 GTCTTCTCTT
* * *
6965213 CTGCAACTTTAGAAAGGCAAGATCTGATATCCTCGATCAGCTCCA
1 CTGCAACTTCAGAAAGGCAAAATCTGATATCCTCAATCAGCTCCA
* * *
6965258 CTGCAACTTCA-AAGAGGCAAAATCTGGTGTCTTCAATCAGCTCCA
1 CTGCAACTTCAGAA-AGGCAAAATCTGATATCCTCAATCAGCTCCA
6965303 ATCTTTATTC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 2 0.05
45 36 0.95
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (45 bp):
CTGCAACTTCAGAAAGGCAAAATCTGATATCCTCAATCAGCTCCA
Found at i:6965583 original size:87 final size:88
Alignment explanation
Indices: 6965417--6965588 Score: 258
Period size: 87 Copynumber: 2.0 Consensus size: 88
6965407 TGAAAAACTA
* * *
6965417 AAATTGGAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGT-ACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
6965482 TAAAACACATAAATTGAAAAGCAG
65 TAAAACACAGAAATTGAAAAGCAG
6965506 AAATTGAAAATACCTCAGCGTGT-CCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCGTGTACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
**
6965570 GACGA-ACAGAAATTGAAAA
66 -AAAACACAGAAATTGAAAA
6965589 TACCTCAGGG
Statistics
Matches: 76, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
87 53 0.70
88 2 0.03
89 21 0.28
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (88 bp):
AAATTGAAAATACCTCAGCGTGTACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
AAAACACAGAAATTGAAAAGCAG
Found at i:6965792 original size:74 final size:72
Alignment explanation
Indices: 6965503--6965945 Score: 559
Period size: 74 Copynumber: 5.9 Consensus size: 72
6965493 AATTGAAAAG
** *
6965503 CAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAGCGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
*
6965568 TTGACGAA
65 TTAACGAA
* *
6965576 CAGAAATTGAAAATACCTCAGGGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 CAGAAATTGAAAATACCTCA--GCGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
6965641 TTTTGAAACATGAAAA
63 TTTT--AAC--G--AA
* * * *
6965657 CGGAAATTGAAAATACCTCAGCGTG-TCCTGAGTCTCAACTCACCTCTCGCAATATGAGTTGAGT
1 CAGAAATTGAAAATACCTCAGCGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
6965721 TTAACGAA
65 TTAACGAA
6965729 CAGAAATTGAAAATACCTCAGCCTGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 CAGAAATTGAAAATACCTCAG-C-GTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
6965794 TTTAACGAA
64 TTTAACGAA
6965803 CAGAAATTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 CAGAAATTGAAAATACCTCAGC--GTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
6965868 TTTTTTTTAA-AAA
63 ----TTTTAACGAA
** *
6965881 CAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCA-CTCTCGTAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAGCGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
6965945 T
66 T
6965946 TTTTAAAAGT
Statistics
Matches: 334, Mismatches: 18, Indels: 39
0.85 0.05 0.10
Matches are distributed among these distances:
70 4 0.01
72 22 0.07
73 22 0.07
74 107 0.32
75 64 0.19
76 21 0.06
77 2 0.01
78 29 0.09
79 42 0.13
81 21 0.06
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.27
Consensus pattern (72 bp):
CAGAAATTGAAAATACCTCAGCGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TAACGAA
Found at i:6966088 original size:73 final size:73
Alignment explanation
Indices: 6965961--6966653 Score: 709
Period size: 73 Copynumber: 9.2 Consensus size: 73
6965951 AAAGTGGAAA
* * *
6965961 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCCCAACTCACCTCTCGCAATATGA
6966026 GTTGATTT
66 GTTGATTT
* * * *
6966034 TTGACAAA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCCCAACTCACTTCTCGCAATGTA
1 TTGA-AAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCCCAACTCACCTCTCGCAATATG
6966098 AGTTGATTTTT
65 AGTTGA--TTT
** *
6966109 TTGAAAAGCA-AAATTGAAAATACCTCAGTATGCCCTGA-GCCTCAACTCACCTCTCGCAATATG
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCC-CAACTCACCTCTCGCAATATG
6966172 AGTTGATTTTTTT
65 AGTTGA----TTT
* * *
6966185 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCCCAACTCACCTCTCGCAATATGA
6966250 GTTGATTTTT
66 GTTGA--TTT
** * ** *** * * *
6966260 TTGAAAAGTGGAAATTG-AAA-AGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTC
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTG----T-CCT--GAG-G-CC-CA-ACTC-A--C
6966323 ACTTCTCGCAATATGAGTTGATTT
52 -C-TCTCGCAATATGAGTTGATTT
* * * *
6966347 TTGACAAA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCCCAACTCATCTCTCGCAATGTA
1 TTGA-AAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCCCAACTCACCTCTCGCAATATG
6966411 AGTTGATTTT
65 AGTTGA-TTT
** * *
6966421 TTGAAAAGCAGAAATTGAAAATACCTCAGTATGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCCCAACTCACCTCTCGCAATATGA
6966486 GTTGATTT
66 GTTGATTT
* * *
6966494 TTGACAAA-CAGAAATTGAAATTACCTTAGCGTGTCCTGAGGCCCAACTCAACTCTCGCAATATG
1 TTGA-AAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCCCAACTCACCTCTCGCAATATG
6966558 AGTTGATTT
65 AGTTGATTT
* * * * *
6966567 TTGAAAAGCAGAAATTGAGAATACCTTAGCGTGCCCTAAGGCACAACTCACCTCTCGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCCCAACTCACCTCTCGCAATATGA
6966632 GTTGATTT
66 GTTGATTT
6966640 TTGAAAA-CAGAAAT
1 TTGAAAAGCAGAAAT
6966654 AAAACATTAG
Statistics
Matches: 520, Mismatches: 68, Indels: 65
0.80 0.10 0.10
Matches are distributed among these distances:
72 10 0.02
73 223 0.43
74 122 0.23
75 28 0.05
76 14 0.03
77 53 0.10
78 7 0.01
79 1 0.00
80 4 0.01
81 2 0.00
82 3 0.01
83 1 0.00
84 6 0.01
85 2 0.00
87 15 0.03
88 6 0.01
89 23 0.04
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (73 bp):
TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCCCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:6966279 original size:14 final size:14
Alignment explanation
Indices: 6966260--6966294 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
6966250 GTTGATTTTT
**
6966260 TTGAAAAGTGGAAA
1 TTGAAAAGCAGAAA
6966274 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
6966288 TTGAAAA
1 TTGAAAA
6966295 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.54, C:0.03, G:0.23, T:0.20
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:6966297 original size:313 final size:308
Alignment explanation
Indices: 6965495--6966584 Score: 1498
Period size: 313 Copynumber: 3.5 Consensus size: 308
6965485 AACACATAAA
** * *
6965495 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAGTATGACCCGAGGCTCAACTCACCTCTCGCAATATGA
** * * *
6965560 GTTGATTTTTGACGAACAGAAATTGAAAATACCTCAGGGTGTGAGCCAAGGCTCAACTCACCTCT
66 GTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCT
* *
6965625 CGCAATATGAGTTGATTTTTG--AA----ACA-TGAAAA-CGGAAATTGAAAATACCTCAGCGTG
129 CGCAATATGAGTTGATTTTTGAAAAGTGGAAATTGAAAAGCAGAAATTGAAAATACCTCAGCGTG
* * * * * *
6965682 TCCTGAGTCTCAACTCACCTCTCGCAATATGAGTTGA-GTTTAACGAACAGAAATTGAAAATACC
194 TCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACC
* * * * * *
6965746 TCAGCCTGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTA
259 TCAG-C-GTG-TCCTGAGGCCCAACTCACTTCTCGCAATGTAAGTTGATTTTT
** * *
6965798 ACG--AA-CAGAAATTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAGCAGAAATTGAAAATACCTCAG--TATGACCCGAGGCTCAACTCACCTCTCGCAATAT
*
6965860 GAGTTGATTTTTTTTTAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCA-C
64 GAGTTGA---TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACC
* *
6965924 TCTCGTAATATGAGTTGATTTTTTTTAAAAGTGGAAATTGAAAAGCAGAAATTGAAAATACCTCA
126 TCTCGCAATATGAGTTGA--TTTTTGAAAAGTGGAAATTGAAAAGCAGAAATTGAAAATACCTCA
*
6965989 ACGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAA
189 GCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAA
6966054 TTACCTCAGCGTGTCCTGAGGCCCAACTCACTTCTCGCAATGTAAGTTGATTTTT
254 TTACCTCAGCGTGTCCTGAGGCCCAACTCACTTCTCGCAATGTAAGTTGATTTTT
*
6966109 TTGAAAAGCA-AAATTGAAAATACCTCAGTATG-CCCTGAGCCTCAACTCACCTCTCGCAATATG
1 TTGAAAAGCAGAAATTGAAAATACCTCAGTATGACCC-GAGGCTCAACTCACCTCTCGCAATATG
6966172 AGTTGATTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACC
65 AGTTGA----TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACC
6966237 TCTCGCAATATGAGTTGATTTTTTTGAAAAGTGGAAATTGAAAAGCAGAAATTGAAAATACCTCA
126 TCTCGCAATATGAGTTGA--TTTTTGAAAAGTGGAAATTGAAAAGCAGAAATTGAAAATACCTCA
6966302 GCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAA
189 GCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAA
6966367 TTACCTCAGCGTGTCCTGAGGCCCAACTCA-TCTCTCGCAATGTAAGTTGA-TTTT
254 TTACCTCAGCGTGTCCTGAGGCCCAACTCACT-TCTCGCAATGTAAGTTGATTTTT
6966421 TTGAAAAGCAGAAATTGAAAATACCTCAGTATG-CCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAGCAGAAATTGAAAATACCTCAGTATGACCC-GAGGCTCAACTCACCTCTCGCAATATG
* * * * * *
6966485 AGTTGATTTTTGACAAACAGAAATTGAAATTACCTTAGCGTGTCCTGAGGCCCAACTCAACTCTC
65 AGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC
**
6966550 GCAATATGAGTTGATTTTTGAAAAGCAGAAATTGA
130 GCAATATGAGTTGATTTTTGAAAAGTGGAAATTGA
6966585 GAATACCTTA
Statistics
Matches: 715, Mismatches: 47, Indels: 46
0.88 0.06 0.06
Matches are distributed among these distances:
300 21 0.03
301 2 0.00
302 55 0.08
303 15 0.02
304 5 0.01
305 33 0.05
306 2 0.00
307 19 0.03
309 67 0.09
310 6 0.01
311 78 0.11
312 129 0.18
313 281 0.39
314 2 0.00
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (308 bp):
TTGAAAAGCAGAAATTGAAAATACCTCAGTATGACCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTGAAAAGTGGAAATTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTC
CTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTC
AGCGTGTCCTGAGGCCCAACTCACTTCTCGCAATGTAAGTTGATTTTT
Found at i:6966336 original size:89 final size:89
Alignment explanation
Indices: 6966185--6966348 Score: 301
Period size: 89 Copynumber: 1.8 Consensus size: 89
6966175 TGATTTTTTT
6966185 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
6966250 GTTGATTTTTTTGAAAAGTGGAAA
66 GTTGATTTTTTTGAAAAGTGGAAA
* * *
6966274 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
6966339 GTTGATTTTT
66 GTTGATTTTT
6966349 GACAAACAGA
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 72 1.00
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.29
Consensus pattern (89 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTTGAAAAGTGGAAA
Found at i:6966541 original size:147 final size:147
Alignment explanation
Indices: 6965495--6966653 Score: 1248
Period size: 147 Copynumber: 7.6 Consensus size: 147
6965485 AACACATAAA
*
6965495 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCC-AAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTG-CCCTGAGGCTCAACTCACCTCTCGCAATATG
* * * * *
6965559 AGTTGATTTTTGACGAACAGAAATTGAAAATACCTCAGGGTGTGAGCC-AAGGCTCAACTCACCT
65 AGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT---CCTGAGGCCCAACTCA-CT
*
6965623 CTCGCAATATGAGTTGATTTTT
126 CTCGCAATATAAGTTGATTTTT
* * * *
6965645 GAAACATGAAAA-CGGAAATTGAAAATACCTCAGCGTGTCCTGAGTCTCAACTCACCTCTCGCAA
1 -----TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAA
* * * * * *
6965709 TATGAGTTGA-GTTTAACGAACAGAAATTGAAAATACCTCAGCCTGTGAGCC-GAGGCTCAACTC
61 TATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAG-C-GTG-TCCTGAGGCCCAACTC
* *
6965772 ACCTCTCGCAATATGAGTTGATTTTA
123 A-CTCTCGCAATATAAGTTGATTTTT
** *
6965798 ACG--AA-CAGAAATTGAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAGCAGAAATTGAAAATACCTCAGC--GTG-CCCTGAGGCTCAACTCACCTCTCGCAATA
* * * * *
6965859 TGAGTTGATTTTTTTTTAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCAC
63 TGAGTTGA---TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCCCAACTCAC
* *
6965924 TCTCGTAATATGAGTTGATTTTTTTTAAAAGT
125 TCTCGCAATATAAGTTGA----TTTT-----T
* * *
6965956 GGAAATTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACTTCTCGCAA
1 -----TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAA
6966021 TATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCCCAACTCACT
61 TATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCCCAACTCAC-
*
6966086 TCTCGCAATGTAAGTTGATTTTT
125 TCTCGCAATATAAGTTGATTTTT
** *
6966109 TTGAAAAGCA-AAATTGAAAATACCTCAGTATGCCCTGAGCCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * * *
6966173 GTTGATTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCT
66 GTTGA----TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCCCAACTCA-CT
*
6966238 CTCGCAATATGAGTTGATTTTTTTGAAAAGT
126 CTCGCAATATAAGTTGA---TTTT------T
* *
6966269 GGAAATTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAA
1 -----TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAA
6966334 TATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCCCAACTCATC
61 TATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCCCAACTCA-C
*
6966399 TCTCGCAATGTAAGTTGA-TTTT
125 TCTCGCAATATAAGTTGATTTTT
**
6966421 TTGAAAAGCAGAAATTGAAAATACCTCAGTATGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
6966486 GTTGATTTTTGACAAACAGAAATTGAAATTACCTTAGCGTGTCCTGAGGCCCAACTCAACTCTCG
66 GTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCCCAACTC-ACTCTCG
*
6966551 CAATATGAGTTGA--TTT
130 CAATATAAGTTGATTTTT
* * * *
6966567 TTGAAAAGCAGAAATTGAGAATACCTTAGCGTGCCCTAAGGCACAACTCACCTCTCGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
6966632 GTTGATTTTTGA-AAACAGAAAT
66 GTTGATTTTTGACAAACAGAAAT
6966654 AAAACATTAG
Statistics
Matches: 880, Mismatches: 72, Indels: 114
0.83 0.07 0.11
Matches are distributed among these distances:
145 10 0.01
146 97 0.11
147 187 0.21
148 48 0.05
149 22 0.03
150 16 0.02
151 66 0.08
152 29 0.03
153 74 0.08
154 59 0.07
155 9 0.01
158 7 0.01
160 1 0.00
161 49 0.06
162 81 0.09
163 3 0.00
164 35 0.04
165 12 0.01
166 75 0.09
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (147 bp):
TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCCCAACTCACTCTCGC
AATATAAGTTGATTTTT
Found at i:6967516 original size:5 final size:5
Alignment explanation
Indices: 6967506--6967549 Score: 53
Period size: 4 Copynumber: 9.8 Consensus size: 5
6967496 CTTGATTCTT
6967506 TTTTC TTTTC TTTTC TTTTC -TTTC -TTTC -TTTC -TTTC TTTT- TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
6967550 TTGACATAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
4 20 0.53
5 18 0.47
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTC
Found at i:6967531 original size:4 final size:4
Alignment explanation
Indices: 6967501--6967544 Score: 54
Period size: 4 Copynumber: 10.5 Consensus size: 4
6967491 TTCACCTTGA
6967501 TTCT TT-T TTCTT TTCTT TTCTT TTCT TTCT TTCT TTCT TTCT TT
1 TTCT TTCT TTC-T TTC-T TTC-T TTCT TTCT TTCT TTCT TTCT TT
6967545 TTTTTTTGAC
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
3 3 0.08
4 21 0.55
5 14 0.37
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (4 bp):
TTCT
Found at i:6967531 original size:26 final size:26
Alignment explanation
Indices: 6967501--6967550 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
6967491 TTCACCTTGA
6967501 TTCTTT-TTTCTTTTCTTTTCTTTTCT
1 TTCTTTCTTTC-TTTCTTTTCTTTTCT
*
6967527 TTCTTTCTTTCTTTCTTTTTTTTT
1 TTCTTTCTTTCTTTCTTTTCTTTT
6967551 TGACATAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (26 bp):
TTCTTTCTTTCTTTCTTTTCTTTTCT
Found at i:6977547 original size:20 final size:20
Alignment explanation
Indices: 6977517--6977561 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
6977507 CTATTTTATT
6977517 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
6977536 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
6977556 ATGGGC
1 ATGGGC
6977562 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:6977684 original size:28 final size:27
Alignment explanation
Indices: 6977590--6977696 Score: 74
Period size: 28 Copynumber: 3.7 Consensus size: 27
6977580 ACTTGTAATA
* * *
6977590 GGGCTACGGCCCAGACTGATACTGATAT
1 GGGCTA-GGCCCAGATTAATATTGATAT
*
6977618 GGGCTAGGCCCAGTATGCTCTGATATTG-TAAT
1 GGGCTAGGCCCAG-A---T-TAATATTGAT-AT
6977650 AGGGCTATGGCCCAGATTAATATTGATAT
1 -GGGCTA-GGCCCAGATTAATATTGATAT
6977679 GGGCTAAGGCCCAG-TTAA
1 GGGCT-AGGCCCAGATTAA
6977697 CACTAAATTC
Statistics
Matches: 66, Mismatches: 3, Indels: 21
0.73 0.03 0.23
Matches are distributed among these distances:
27 11 0.17
28 19 0.29
29 10 0.15
30 2 0.03
31 1 0.02
32 9 0.14
33 7 0.11
34 7 0.11
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (27 bp):
GGGCTAGGCCCAGATTAATATTGATAT
Found at i:6977724 original size:62 final size:61
Alignment explanation
Indices: 6977585--6977726 Score: 155
Period size: 61 Copynumber: 2.3 Consensus size: 61
6977575 TCTCGACTTG
* * * * *
6977585 TAATAGGGCTACGGCCCAGACTGATACTGATATGGGCTAGGCCCAGTATGCTCTGATATTG
1 TAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGAAATTC
* * *
6977646 TAATAGGGCTATGGCCCAGATTAATATTGATATGGGCTAAGGCCCAGT-TAACACT-AAATTC
1 TAATAGGGCTACGGCCCAGACTAATACTGATATGGGCT-AGGCCCAGTAT-ACACTGAAATTC
6977707 TAAATAGGGCTTA-GGCCCAG
1 T-AATAGGGC-TACGGCCCAG
6977727 TAAAGCTTGA
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
61 40 0.58
62 27 0.39
63 2 0.03
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (61 bp):
TAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGAAATTC
Found at i:6982084 original size:42 final size:36
Alignment explanation
Indices: 6982002--6982073 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
6981992 TCAAAAGTAC
6982002 GAATTCAATTTAACAGTTAATCGTGATCTAATTAAA
1 GAATTCAATTTAACAGTTAATCGTGATCTAATTAAA
*
6982038 GAATTCAATTTAACATTTAATCGTGATCTAATTAAA
1 GAATTCAATTTAACAGTTAATCGTGATCTAATTAAA
6982074 AAATGAGAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.42, C:0.11, G:0.10, T:0.38
Consensus pattern (36 bp):
GAATTCAATTTAACAGTTAATCGTGATCTAATTAAA
Found at i:6982747 original size:2 final size:2
Alignment explanation
Indices: 6982740--6982790 Score: 70
Period size: 2 Copynumber: 26.5 Consensus size: 2
6982730 TATGTACATA
*
6982740 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AA AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
6982781 AC A- AT AT AT A
1 AT AT AT AT AT A
6982791 CCTATATTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
1 2 0.04
2 43 0.96
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:6982952 original size:22 final size:24
Alignment explanation
Indices: 6982911--6982975 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 24
6982901 AAATAAACGT
6982911 ACAATAGTATAAAAGATATATA-ACTA
1 ACAATA-TAT-AAAGATATATACA-TA
6982937 ACAATAT-TAAAG-TATATACATA
1 ACAATATATAAAGATATATACATA
*
6982959 ACAATATATAAAAATAT
1 ACAATATATAAAGATAT
6982976 GATATTAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
22 15 0.43
23 9 0.26
24 4 0.11
25 1 0.03
26 6 0.17
ACGTcount: A:0.58, C:0.08, G:0.05, T:0.29
Consensus pattern (24 bp):
ACAATATATAAAGATATATACATA
Found at i:6983056 original size:13 final size:11
Alignment explanation
Indices: 6982988--6983066 Score: 53
Period size: 11 Copynumber: 7.5 Consensus size: 11
6982978 TATTAAAAAC
6982988 ATATATACATA
1 ATATATACATA
6982999 ATA-AT--ATGA
1 ATATATACAT-A
6983008 ATATAT--AT-
1 ATATATACATA
*
6983016 ATATATATATA
1 ATATATACATA
* *
6983027 ATATAGTATTAGA
1 ATATA-TA-CATA
*
6983040 ATATTTACATA
1 ATATATACATA
6983051 ATATATACATA
1 ATATATACATA
6983062 ATATA
1 ATATA
6983067 AATACTAATA
Statistics
Matches: 56, Mismatches: 5, Indels: 14
0.75 0.07 0.19
Matches are distributed among these distances:
8 8 0.14
9 4 0.07
10 8 0.14
11 25 0.45
12 4 0.07
13 7 0.12
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.41
Consensus pattern (11 bp):
ATATATACATA
Found at i:6987018 original size:29 final size:29
Alignment explanation
Indices: 6986974--6987080 Score: 92
Period size: 28 Copynumber: 3.6 Consensus size: 29
6986964 AATTTTTTAA
*
6986974 TTTTAAAAATTCAAAAAATATAAAAATAT
1 TTTTAAAAATTAAAAAAATATAAAAATAT
* * *
6987003 TTTTAAAAATT-AAAAACTATTAAAGT-T
1 TTTTAAAAATTAAAAAAATATAAAAATAT
* *
6987030 ATTTTAAAAAGTATAAAAATTATAAAAAATATT
1 -TTTTAAAAATTA-AAAAAATAT-AAAAATA-T
**
6987063 TTTTAAATTTTAAAAAAA
1 TTTTAAAAATTAAAAAAA
6987081 ATTAAGGTAA
Statistics
Matches: 61, Mismatches: 11, Indels: 10
0.74 0.13 0.12
Matches are distributed among these distances:
27 1 0.02
28 22 0.36
29 11 0.18
30 8 0.13
31 9 0.15
32 9 0.15
33 1 0.02
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (29 bp):
TTTTAAAAATTAAAAAAATATAAAAATAT
Found at i:6987052 original size:21 final size:21
Alignment explanation
Indices: 6987012--6987052 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
6987002 TTTTTAAAAA
* *
6987012 TTAAAAACTATTAAAGTTATT
1 TTAAAAACTATAAAAATTATT
*
6987033 TTAAAAAGTATAAAAATTAT
1 TTAAAAACTATAAAAATTAT
6987053 AAAAAATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.54, C:0.02, G:0.05, T:0.39
Consensus pattern (21 bp):
TTAAAAACTATAAAAATTATT
Found at i:6987571 original size:26 final size:26
Alignment explanation
Indices: 6987535--6987644 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
6987525 TGATACAAAT
*
6987535 TGATAAAAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
6987561 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
6987587 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
6987613 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
6987639 TGATAA
1 TGATAA
6987645 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:6989661 original size:137 final size:137
Alignment explanation
Indices: 6989415--6989701 Score: 556
Period size: 137 Copynumber: 2.1 Consensus size: 137
6989405 GAGTAGTCTC
6989415 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
6989480 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
6989545 ACTGTTA
131 ACTGTTA
6989552 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
6989617 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
6989682 ACTGTTA
131 ACTGTTA
**
6989689 CCTGAATGGGCTT
1 CCCAAATGGGCTT
6989702 AGGCCCAATA
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 148 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:6993475 original size:25 final size:26
Alignment explanation
Indices: 6993446--6993553 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
6993436 TGATACAAAT
6993446 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
6993471 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
6993496 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
6993522 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
6993548 TGATAA
1 TGATAA
6993554 GAATTTCATG
Statistics
Matches: 81, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
25 32 0.40
26 49 0.60
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:6993508 original size:51 final size:51
Alignment explanation
Indices: 6993446--6993553 Score: 182
Period size: 51 Copynumber: 2.1 Consensus size: 51
6993436 TGATACAAAT
6993446 TGATAATGGTTAGGTAAATGTTCCATGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
* *
6993496 TGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAT-GGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
6993548 TGATAA
1 TGATAA
6993554 GAATTTCATG
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
50 7 0.13
51 24 0.44
52 23 0.43
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.37
Consensus pattern (51 bp):
TGATAATGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
Found at i:6995569 original size:137 final size:137
Alignment explanation
Indices: 6995323--6995609 Score: 556
Period size: 137 Copynumber: 2.1 Consensus size: 137
6995313 GAGTAGTCTC
6995323 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
6995388 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
6995453 ACTGTTA
131 ACTGTTA
6995460 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
6995525 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
6995590 ACTGTTA
131 ACTGTTA
**
6995597 CCTGAATGGGCTT
1 CCCAAATGGGCTT
6995610 AGGCCCAATA
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 148 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:6998281 original size:16 final size:16
Alignment explanation
Indices: 6998260--6998293 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
6998250 TCTCTGTAAC
*
6998260 TTTTTTTCTTTTTCTT
1 TTTTTTTCTTTTGCTT
6998276 TTTTTTTCTTTTGCTT
1 TTTTTTTCTTTTGCTT
6998292 TT
1 TT
6998294 CATTTGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.00, C:0.12, G:0.03, T:0.85
Consensus pattern (16 bp):
TTTTTTTCTTTTGCTT
Found at i:6998617 original size:15 final size:14
Alignment explanation
Indices: 6998599--6998629 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
6998589 TTAATTTATT
6998599 TAATAATAATGCTAA
1 TAATAATAAT-CTAA
6998614 TAATAATAATCTAA
1 TAATAATAATCTAA
6998628 TA
1 TA
6998630 TAAAACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
TAATAATAATCTAA
Found at i:6998640 original size:21 final size:20
Alignment explanation
Indices: 6998616--6998684 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
6998606 AATGCTAATA
6998616 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* **
6998637 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
6998656 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
6998677 ATAATAAT
1 ATAATAAT
6998685 AATCATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 2 0.05
21 19 0.50
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:7001598 original size:27 final size:27
Alignment explanation
Indices: 7001550--7001706 Score: 153
Period size: 27 Copynumber: 5.8 Consensus size: 27
7001540 GCGAGGCTGC
* *
7001550 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
7001577 CAGATATTATGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* *
7001603 CAGATATATGTAGCAGAGCCACCAAAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
7001630 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
7001657 CAGATATATGTGGCAGAGACACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
7001684 CAGATAATTGTGGCACAGCCACC
1 CAGAT-ATTGTGGCAGAGCCACC
7001707 TGGACGCTTC
Statistics
Matches: 107, Mismatches: 15, Indels: 16
0.78 0.11 0.12
Matches are distributed among these distances:
26 10 0.09
27 92 0.86
28 5 0.05
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:7001650 original size:54 final size:54
Alignment explanation
Indices: 7001586--7001706 Score: 188
Period size: 54 Copynumber: 2.2 Consensus size: 54
7001576 ACAGATATTA
* *
7001586 TGGCAGAGCCACCAGAACAGATATATGTAGCAGAGCCACCAAATCAGATAATCG
1 TGGCACAGCCACCAGAACAGATATATGTAGCAGAGACACCAAATCAGATAATCG
* * * *
7001640 TGGCATAGCCACCAGAACAGATATATGTGGCAGAGACACCAGATCAGATAATTG
1 TGGCACAGCCACCAGAACAGATATATGTAGCAGAGACACCAAATCAGATAATCG
7001694 TGGCACAGCCACC
1 TGGCACAGCCACC
7001707 TGGACGCTTC
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 61 1.00
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.16
Consensus pattern (54 bp):
TGGCACAGCCACCAGAACAGATATATGTAGCAGAGACACCAAATCAGATAATCG
Found at i:7002660 original size:26 final size:26
Alignment explanation
Indices: 7002631--7002686 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
7002621 TGATACAAAT
7002631 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
7002657 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
7002683 TGAT
1 TGAT
7002687 GGGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:7004206 original size:24 final size:25
Alignment explanation
Indices: 7004170--7004217 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
7004160 ACAGTTTTAC
7004170 CCCTAGAGATAAATT-ACCGAAATA
1 CCCTAGAGATAAATTGACCGAAATA
* * *
7004194 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGAGATAAATTGACCGAAAT
7004218 GCATGTTTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.25
Consensus pattern (25 bp):
CCCTAGAGATAAATTGACCGAAATA
Found at i:7009266 original size:25 final size:26
Alignment explanation
Indices: 7009198--7009278 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
7009188 TGATACAAAT
7009198 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
7009224 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
7009250 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
7009275 TGAT
1 TGAT
7009279 GGGAATTTCA
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
25 22 0.40
26 33 0.60
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:7010786 original size:25 final size:26
Alignment explanation
Indices: 7010758--7010809 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
7010748 TTTACAGTTT
7010758 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
7010783 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
7010809 T
1 T
7010810 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:7012965 original size:26 final size:26
Alignment explanation
Indices: 7012936--7012991 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
7012926 TGAAATGCCC
*
7012936 ATCATAGAACATTTACCTAAATCATT
1 ATCATAGAACATTTACCTAAACCATT
* *
7012962 ATCATGGAACATTTACCTAACCCATT
1 ATCATAGAACATTTACCTAAACCATT
7012988 ATCA
1 ATCA
7012992 ATTTGTACCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.39, C:0.23, G:0.05, T:0.32
Consensus pattern (26 bp):
ATCATAGAACATTTACCTAAACCATT
Found at i:7018430 original size:21 final size:20
Alignment explanation
Indices: 7018406--7018459 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 20
7018396 TCTCTGTAAC
*
7018406 TTTCTTTCTTTTTCTTTTTGT
1 TTTCTTTCTTTTTC-ATTTGT
7018427 TTTCTTT-TGCTTTTCATTTGT
1 TTTCTTTCT--TTTTCATTTGT
*
7018448 TTTATTTCTTTT
1 TTTCTTTCTTTT
7018460 ATGTTATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
20 4 0.14
21 18 0.64
22 6 0.21
ACGTcount: A:0.04, C:0.13, G:0.06, T:0.78
Consensus pattern (20 bp):
TTTCTTTCTTTTTCATTTGT
Found at i:7018788 original size:21 final size:20
Alignment explanation
Indices: 7018764--7018831 Score: 68
Period size: 21 Copynumber: 3.4 Consensus size: 20
7018754 ATGCTAATAG
7018764 TAATAATCTAATATAAAACCA
1 TAATAAT-TAATATAAAACCA
* **
7018785 TAAT-GTTAAT-TAATAATTA
1 TAATAATTAATATAA-AACCA
7018804 TAATAATTTAATATAAAACCA
1 TAATAA-TTAATATAAAACCA
7018825 TAATAAT
1 TAATAAT
7018832 AATCATTATA
Statistics
Matches: 37, Mismatches: 6, Indels: 9
0.71 0.12 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.30
20 2 0.05
21 18 0.49
22 3 0.08
ACGTcount: A:0.54, C:0.07, G:0.01, T:0.37
Consensus pattern (20 bp):
TAATAATTAATATAAAACCA
Found at i:7020609 original size:25 final size:27
Alignment explanation
Indices: 7020568--7020622 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
7020558 AGTCAAACAT
7020568 GTATTTAGGTCAATTTAAC-CCTAGGG
1 GTATTTAGGTCAATTTAACTCCTAGGG
* *
7020594 GTATTTCGGT-AATTTATCTCCTAGGG
1 GTATTTAGGTCAATTTAACTCCTAGGG
7020620 GTA
1 GTA
7020623 AAACTATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.38
Consensus pattern (27 bp):
GTATTTAGGTCAATTTAACTCCTAGGG
Found at i:7022133 original size:26 final size:26
Alignment explanation
Indices: 7022102--7022209 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
7022092 TGAAATGCCC
*
7022102 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
7022128 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
7022154 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
7022180 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
7022206 ATCA
1 ATCA
7022210 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:7025304 original size:3 final size:3
Alignment explanation
Indices: 7025296--7025325 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
7025286 TGAAATTTTC
*
7025296 ATT ATT ATT ATT ATT ATT ATG ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
7025326 TTAGTTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:7027814 original size:20 final size:20
Alignment explanation
Indices: 7027784--7027828 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
7027774 CTGTTTTATT
7027784 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
7027803 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
7027823 ATGGGC
1 ATGGGC
7027829 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:7027958 original size:28 final size:28
Alignment explanation
Indices: 7027857--7027970 Score: 81
Period size: 28 Copynumber: 3.9 Consensus size: 28
7027847 ACTTGTAATA
* * *
7027857 GGGCTACGGCCCAGACTGATACTGATAT
1 GGGCTAAGGCCCAGATTAATACTGATAT
* *
7027885 GGGCT-AGGCCCAGTATGCTCTGATATTG-TAAT
1 GGGCTAAGGCCCAG-A---T-TAATACTGAT-AT
*
7027917 AGGGCTATGGCCCAGATTAATACTGATAT
1 -GGGCTAAGGCCCAGATTAATACTGATAT
*
7027946 GGGCTAAGGCCCAG-TTAACACTGAT
1 GGGCTAAGGCCCAGATTAATACTGAT
7027971 TTCTGAATAG
Statistics
Matches: 69, Mismatches: 8, Indels: 19
0.72 0.08 0.20
Matches are distributed among these distances:
27 17 0.25
28 19 0.28
29 8 0.12
30 2 0.03
31 1 0.01
32 9 0.13
33 6 0.09
34 7 0.10
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATACTGATAT
Found at i:7027991 original size:62 final size:61
Alignment explanation
Indices: 7027849--7027993 Score: 179
Period size: 61 Copynumber: 2.4 Consensus size: 61
7027839 ATATCTCGAC
* * *
7027849 TTGTAATAGGGCTACGGCCCAGACTGATACTGATATGGGCTAGGCCCAGTATGCTCTGATA
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATA
* *
7027910 TTGTAATAGGGCTATGGCCCAGATTAATACTGATATGGGCTAAGGCCCAGT-TAACACTGAT-
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCT-AGGCCCAGTAT-ACACTGATA
*
7027971 TTCTGAATAGGGCTTA-GGCCCAG
1 TTGT-AATAGGGC-TACGGCCCAG
7027994 TAAAGCTTGA
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
61 42 0.57
62 30 0.41
63 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (61 bp):
TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATA
Found at i:7031591 original size:25 final size:26
Alignment explanation
Indices: 7031554--7031605 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
7031544 TCAAACATGC
7031554 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* * *
7031580 ATTTCGGT-AATTTATCTCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
7031605 A
1 A
7031606 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:7033124 original size:26 final size:26
Alignment explanation
Indices: 7033088--7033195 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
7033078 TGAAATGCCC
* *
7033088 ATCATGGAACATTTACCTAAACTATT
1 ATCATGGAACATTTACCTAACCCATT
7033114 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
7033140 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
7033166 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
7033192 ATCA
1 ATCA
7033196 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:7036573 original size:26 final size:26
Alignment explanation
Indices: 7036544--7036610 Score: 66
Period size: 26 Copynumber: 2.6 Consensus size: 26
7036534 CGATATATGA
7036544 CTCTTCATGAGCTTCCTAATTAAAAG
1 CTCTTCATGAGCTTCCTAATTAAAAG
* * **
7036570 CTCTT-AGTAAGCTTCCTGATTAATGG
1 CTCTTCA-TGAGCTTCCTAATTAAAAG
*
7036596 CTCTCCA-GAGCTTCC
1 CTCTTCATGAGCTTCC
7036611 CGATATTGGC
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
25 8 0.24
26 24 0.73
27 1 0.03
ACGTcount: A:0.24, C:0.27, G:0.15, T:0.34
Consensus pattern (26 bp):
CTCTTCATGAGCTTCCTAATTAAAAG
Found at i:7036666 original size:24 final size:24
Alignment explanation
Indices: 7036577--7036694 Score: 87
Period size: 24 Copynumber: 4.8 Consensus size: 24
7036567 AAGCTCTTAG
* *
7036577 TAAGCTTCCTGATTAATGGCTC-TC
1 TAAGCTTCCCG-TTATTGGCTCATC
* *
7036601 CAGAGCTTCCCGATATTGGCTCA-C
1 TA-AGCTTCCCGTTATTGGCTCATC
* * *
7036625 TTGAACCTTCCCGATATTGGCTCATA
1 -T-AAGCTTCCCGTTATTGGCTCATC
* *
7036651 TAAGCTTCCTGTTATTGGCTCTTC
1 TAAGCTTCCCGTTATTGGCTCATC
* *
7036675 GAAGCTACCCGTTATTGGCT
1 TAAGCTTCCCGTTATTGGCT
7036695 GGCATGAGCT
Statistics
Matches: 74, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
24 45 0.61
25 28 0.38
26 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.19, T:0.35
Consensus pattern (24 bp):
TAAGCTTCCCGTTATTGGCTCATC
Found at i:7036725 original size:24 final size:25
Alignment explanation
Indices: 7036698--7036744 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
7036688 ATTGGCTGGC
7036698 ATGAGCTTC-C-TAAATATGGCTCTT
1 ATGAGCTTCACGT-AATATGGCTCTT
7036722 ATGAGCTTCACGTAATATGGCTC
1 ATGAGCTTCACGTAATATGGCTC
7036745 GGGAGTGTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 9 0.43
25 11 0.52
26 1 0.05
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (25 bp):
ATGAGCTTCACGTAATATGGCTCTT
Found at i:7038070 original size:19 final size:19
Alignment explanation
Indices: 7038032--7038067 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7038022 TATGTGATTG
7038032 AATTTTACTATAAATTTTC
1 AATTTTACTATAAATTTTC
*
7038051 AATTTTATTA-AAATTTT
1 AATTTTACTATAAATTTT
7038068 TCACCAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (19 bp):
AATTTTACTATAAATTTTC
Found at i:7038431 original size:37 final size:37
Alignment explanation
Indices: 7038386--7038459 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
7038376 ATTTGGCCTT
7038386 CAAGTTATTTTAAATTTAAATTGAATAGAAAATTCAA
1 CAAGTTATTTTAAATTTAAATTGAATAGAAAATTCAA
7038423 CAAGTTATTTTAAATTTAAATTGAATAGAAAATTCAA
1 CAAGTTATTTTAAATTTAAATTGAATAGAAAATTCAA
7038460 TAAAAAAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.49, C:0.05, G:0.08, T:0.38
Consensus pattern (37 bp):
CAAGTTATTTTAAATTTAAATTGAATAGAAAATTCAA
Found at i:7041360 original size:18 final size:20
Alignment explanation
Indices: 7041337--7041374 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7041327 ATAAATTGTG
7041337 TATATTA-A-AATAAAAATA
1 TATATTATATAATAAAAATA
7041355 TATATTATATAATAAAAATA
1 TATATTATATAATAAAAATA
7041375 AAGTTTTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.39
19 1 0.06
20 10 0.56
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
TATATTATATAATAAAAATA
Found at i:7046189 original size:26 final size:26
Alignment explanation
Indices: 7046158--7046265 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
7046148 TGAAATGCCC
*
7046158 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
7046184 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* **
7046210 ATCATGGAATATTTACCTAATTCATT
1 ATCATGGAACATTTACCTAACCCATT
7046236 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
7046262 ATCA
1 ATCA
7046266 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:7046727 original size:3 final size:3
Alignment explanation
Indices: 7046702--7046778 Score: 127
Period size: 3 Copynumber: 25.3 Consensus size: 3
7046692 AAACAAATAC
* *
7046702 AAT AAT ATAT AAA AAT AAA AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7046748 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
7046779 TAGTAACATA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
3 66 0.96
4 3 0.04
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7047129 original size:7 final size:7
Alignment explanation
Indices: 7047113--7047219 Score: 50
Period size: 7 Copynumber: 15.7 Consensus size: 7
7047103 AATAAATGAA
*
7047113 ATAATTT
1 ATAATAT
7047120 ATAATAT
1 ATAATAT
7047127 ATAATAT
1 ATAATAT
*
7047134 A-AAAAT
1 ATAATAT
* *
7047140 GTAAGTTT
1 ATAA-TAT
*
7047148 TTAA-A-
1 ATAATAT
*
7047153 ATAATGT
1 ATAATAT
7047160 ATAATAT
1 ATAATAT
*
7047167 A-AATAA
1 ATAATAT
7047173 ATAAATAT
1 AT-AATAT
7047181 ATAAGATAT
1 AT-A-ATAT
7047190 ATAAGT-T
1 ATAA-TAT
7047197 A-AA-AT
1 ATAATAT
7047202 ATAATAT
1 ATAATAT
7047209 ATAATA-
1 ATAATAT
7047215 ATAAT
1 ATAAT
7047220 TTACAAATTT
Statistics
Matches: 77, Mismatches: 12, Indels: 23
0.69 0.11 0.21
Matches are distributed among these distances:
5 5 0.06
6 18 0.23
7 34 0.44
8 14 0.18
9 6 0.08
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (7 bp):
ATAATAT
Found at i:7047183 original size:21 final size:21
Alignment explanation
Indices: 7047151--7047215 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
7047141 TAAGTTTTTA
*
7047151 AAAT-AATGTATAATATAAAT
1 AAATAAATATATAATATAAAT
* *
7047171 AAATAAATATATAAGATATAT
1 AAATAAATATATAATATAAAT
*
7047192 AAGTTAAA-ATATAATATATAAT
1 AA-ATAAATATATAATATA-AAT
7047214 AA
1 AA
7047216 TAATTTACAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
20 4 0.11
21 24 0.67
22 8 0.22
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.34
Consensus pattern (21 bp):
AAATAAATATATAATATAAAT
Found at i:7047184 original size:28 final size:29
Alignment explanation
Indices: 7047153--7047213 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 29
7047143 AGTTTTTAAA
7047153 ATAATGTATAATATAA-AT-AAATA-AATAT
1 ATAATG-AT-ATATAAGATAAAATATAATAT
*
7047181 ATAA-GATATATAAGTTAAAATATAATAT
1 ATAATGATATATAAGATAAAATATAATAT
7047209 ATAAT
1 ATAAT
7047214 AATAATTTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
25 6 0.21
26 3 0.11
27 6 0.21
28 13 0.46
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (29 bp):
ATAATGATATATAAGATAAAATATAATAT
Found at i:7047254 original size:12 final size:13
Alignment explanation
Indices: 7047235--7047265 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
7047225 AATTTTGAAA
7047235 ATATAAATAATAT
1 ATATAAATAATAT
7047248 A-ATAAATAATAT
1 ATATAAATAATAT
7047260 ATATAA
1 ATATAA
7047266 TAAATTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
ATATAAATAATAT
Found at i:7047263 original size:16 final size:15
Alignment explanation
Indices: 7047240--7047270 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
7047230 TGAAAATATA
7047240 AATAATATAATAAAT
1 AATAATATAATAAAT
7047255 AATATATATAATAAAT
1 AATA-ATATAATAAAT
7047271 TAAAAATAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AATAATATAATAAAT
Found at i:7047627 original size:17 final size:18
Alignment explanation
Indices: 7047574--7047680 Score: 155
Period size: 17 Copynumber: 5.9 Consensus size: 18
7047564 AATCATATCT
*
7047574 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
7047593 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
7047611 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
7047628 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
7047646 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
7047663 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
7047681 TGAAGATTAT
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 32 0.40
18 32 0.40
19 16 0.20
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:7047632 original size:35 final size:35
Alignment explanation
Indices: 7047574--7047680 Score: 187
Period size: 35 Copynumber: 3.0 Consensus size: 35
7047564 AATCATATCT
7047574 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
7047611 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
7047646 TCTAAGATTGTATCATATCTAAGATTGCATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
7047681 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
35 54 0.78
36 5 0.07
37 10 0.14
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:7048844 original size:119 final size:120
Alignment explanation
Indices: 7048285--7048917 Score: 979
Period size: 121 Copynumber: 5.3 Consensus size: 120
7048275 TGGAGTCTGT
* * **
7048285 TTGAGAACATCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATGTC
1 TTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACC
* * *
7048350 AAATCA-CATTGGATCTGGCTTCAGTATAAACATCTGAAGGTTAGATCTGCCATGTG
66 AAATCATC-TTGGATCT-GCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATATG
* * *
7048406 TCTGAGAACATCTGAGAGTTAAATCTGCTATGTCCTCGAATTGTTCCTTATAAACACAAGAATAC
1 T-TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
*
7048471 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCTGTTATATG
65 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATATG
*
7048527 TCTGAGAACATCTGAGAGTTAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 T-TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
* *
7048592 CAAATCATCTTAGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATATC
65 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATATG
* * ** *
7048648 TT-AGAACGTCTAAGAGTCAAAATCTATTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAA
1 TTGAGAACATCTGAGAGTC-AAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
*
7048712 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCGGCTATAT-
65 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATATG
7048767 TTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACC
1 TTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACC
* *
7048832 AAATCATCTTGGATCTGTTTCAGTATAAACATCTGAAAG-CTAGATCTGCTATAT-
66 AAATCATCTTGGATCTGCTTCAGTATAAACATCTG-AAGTTTAGATCTGCTATATG
7048886 TTGAGAACATCTGAGAGTCAAATCTGCTATGT
1 TTGAGAACATCTGAGAGTCAAATCTGCTATGT
7048918 TCAACTTGTT
Statistics
Matches: 475, Mismatches: 32, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
119 137 0.29
120 113 0.24
121 153 0.32
122 71 0.15
123 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33
Consensus pattern (120 bp):
TTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACC
AAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATATG
Found at i:7048857 original size:239 final size:238
Alignment explanation
Indices: 7048284--7048940 Score: 959
Period size: 239 Copynumber: 2.7 Consensus size: 238
7048274 CTGGAGTCTG
* * **
7048284 TTTGAGAACATCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATGT
1 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
* * *
7048349 CAAATCA-CATTGGATCTGGCTTCAGTATAAACATCTGAAGGTTAGATCTGCCATGTGTCTGAGA
66 CAAATCATC-TTGGATCT-GCTTCAGTATAAACATCTGAA-GTTAGATCTG-C-TATATCTTAGA
* * *
7048413 ACATCTGAGAGT-TAAATCTGCTATGTCCTCGAATTGTTCCTTATAAACACAAGAATACCAAATC
126 ACATCTGAGAGTCAAAATCTACTATGTCCTCGAATTGTTCCTTATAAACACAAGAATAACAAATC
* *
7048477 ATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCTGTTATA
191 ATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCGGCTATA
*
7048525 TGTCTGAGAACATCTGAGAGTTAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAAT
1 T-T-TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAAT
*
7048590 ACCAAATCATCTTAGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATATCTTAGAAC
64 ACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAG-TTAGATCTGCTATATCTTAGAAC
* * * * *
7048655 GTCTAAGAGTCAAAATCTATTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAACAAATCAT
128 ATCTGAGAGTCAAAATCTACTATGTCCTCGAATTGTTCCTTATAAACACAAGAATAACAAATCAT
7048720 CTTGGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCGGCTATA
193 CTTGGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCGGCTATA
7048766 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
* *
7048831 CAAATCATCTTGGATCTGTTTCAGTATAAACATCTGAAAGCTAGATCTGCTATAT-TTGAGAACA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTG-AAGTTAGATCTGCTATATCTT-AGAACA
* *
7048895 TCTGAGAGTC-AAATCTGCTATGT--TC-AACTTGTTCCCTATAAACACA
129 TCTGAGAGTCAAAATCTACTATGTCCTCGAA-TTGTTCCTTATAAACACA
7048941 GGGATGCTAT
Statistics
Matches: 378, Mismatches: 30, Indels: 21
0.88 0.07 0.05
Matches are distributed among these distances:
235 1 0.00
236 18 0.05
238 13 0.03
239 124 0.33
240 22 0.06
241 96 0.25
242 31 0.08
243 72 0.19
244 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (238 bp):
TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTAGATCTGCTATATCTTAGAACATC
TGAGAGTCAAAATCTACTATGTCCTCGAATTGTTCCTTATAAACACAAGAATAACAAATCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCGGCTATA
Found at i:7049029 original size:44 final size:43
Alignment explanation
Indices: 7048909--7049035 Score: 107
Period size: 44 Copynumber: 2.9 Consensus size: 43
7048899 AGAGTCAAAT
* * *
7048909 CTGCTATGTTCAA-CTTGTTCCCTATAAACACAGGGATGCTATG
1 CTGCTATCTTCAATC-TGTTCCCTATAAACACAGGAATGCGATG
* * * * *
7048952 CTG-AATTCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATG
1 CTGCTA-TCTTCAATCTG-TTCCCTATAAACACAGGAATG-C-GATG
*
7048998 -TGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGC
1 CTGCTATCTTCAATCTGTTCCCTATAAACACAGGAATGC
7049036 CGAATCTTGT
Statistics
Matches: 64, Mismatches: 14, Indels: 12
0.71 0.16 0.13
Matches are distributed among these distances:
42 1 0.02
43 11 0.17
44 35 0.55
45 13 0.20
46 4 0.06
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (43 bp):
CTGCTATCTTCAATCTGTTCCCTATAAACACAGGAATGCGATG
Found at i:7062245 original size:25 final size:27
Alignment explanation
Indices: 7062208--7062260 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
7062198 TCAAACATGC
7062208 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
7062234 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
7062260 A
1 A
7062261 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:7063762 original size:25 final size:25
Alignment explanation
Indices: 7063728--7063860 Score: 214
Period size: 25 Copynumber: 5.2 Consensus size: 25
7063718 ACATGAATTC
7063728 TTATCATGAAACATTTACCTAACCA
1 TTATCATGAAACATTTACCTAACCA
7063753 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAA-CCA
*
7063779 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACC-A
7063805 TTATCATG-AACATTTACCTAACCA
1 TTATCATGAAACATTTACCTAACCA
*
7063829 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACC-A
7063855 TTATCA
1 TTATCA
7063861 ATTTGTATCA
Statistics
Matches: 103, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
24 9 0.09
25 54 0.52
26 40 0.39
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (25 bp):
TTATCATGAAACATTTACCTAACCA
Found at i:7069584 original size:26 final size:26
Alignment explanation
Indices: 7069548--7069683 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
7069538 CATGATATTC
7069548 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
7069574 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
7069600 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
7069626 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
7069652 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
7069678 TTATCA
1 TTATCA
7069684 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:7072805 original size:30 final size:28
Alignment explanation
Indices: 7072764--7072862 Score: 108
Period size: 29 Copynumber: 3.4 Consensus size: 28
7072754 TTTTTTTTAA
* *
7072764 AATTTTAAAAATATTTTTTATAATTTTT
1 AATTTTTAAAATAATTTTTATAATTTTT
* * *
7072792 ATACTTTTTAAAATAACTTTAATAGTTTTT
1 A-A-TTTTTAAAATAATTTTTATAATTTTT
*
7072822 AATTTTTAAAAATAATTTTTATATTTTTT
1 AATTTTT-AAAATAATTTTTATAATTTTT
*
7072851 AATTTTTTAAAT
1 AATTTTTAAAAT
7072863 TAAAAAATAA
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
28 10 0.17
29 27 0.46
30 22 0.37
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.59
Consensus pattern (28 bp):
AATTTTTAAAATAATTTTTATAATTTTT
Found at i:7072807 original size:21 final size:21
Alignment explanation
Indices: 7072783--7072823 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7072773 AATATTTTTT
* *
7072783 ATAATTTTTATACTTTTTAAA
1 ATAACTTTAATACTTTTTAAA
*
7072804 ATAACTTTAATAGTTTTTAA
1 ATAACTTTAATACTTTTTAA
7072824 TTTTTAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (21 bp):
ATAACTTTAATACTTTTTAAA
Found at i:7076239 original size:24 final size:26
Alignment explanation
Indices: 7076180--7076239 Score: 63
Period size: 24 Copynumber: 2.4 Consensus size: 26
7076170 AATAAAATGA
*
7076180 TATTAAAAAAAACTTCAAAATAACGAT
1 TATTAAAAAAAAC-ACAAAATAACGAT
* *
7076207 T-TTATAAAAAA-ACAAAATAA-GGT
1 TATTAAAAAAAACACAAAATAACGAT
7076230 TATTAAAAAA
1 TATTAAAAAA
7076240 TAAAAAACAA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
23 3 0.11
24 15 0.54
26 9 0.32
27 1 0.04
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.27
Consensus pattern (26 bp):
TATTAAAAAAAACACAAAATAACGAT
Found at i:7079426 original size:19 final size:19
Alignment explanation
Indices: 7079381--7079427 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
7079371 ATCAAATTAA
*
7079381 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
7079400 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
7079419 AATAAAAAT
1 AATAAAAAT
7079428 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:7081367 original size:46 final size:46
Alignment explanation
Indices: 7081314--7081750 Score: 506
Period size: 46 Copynumber: 9.5 Consensus size: 46
7081304 ATAATCCACA
*
7081314 ACTTCAATTTACAGCATTCAAACACTTCAATTTGCAGCACTTTAAC
1 ACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAAC
*
7081360 ACTTCAATTTACAGCATTAAAACACTTCAATTTGCAGCACTTTAAC
1 ACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAAC
* * ** * *
7081406 ATTTCAATTAACAATATTTATAGCACTTCAATTTGCAACA-TTTAAGC
1 ACTTCAATTTACAGCATTTA-AACACTTCAATTTGCAGCACTTTAA-C
*
7081453 ACTTCAATTTACAGCATTCAAACACTTCAATTTGCAGCACTTTAAC
1 ACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAAC
* * *
7081499 ATTTCAATTAACAACATTTAAACACTTCAATTTGCAGCACTTTAAC
1 ACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAAC
* *
7081545 ACTTCAATTTACAGCATTAAAACACTTTAATTTGCAGCACTTTAAC
1 ACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAAC
* * * * *
7081591 ATTTCAATTAACAACATTTAAACA-TCTCAATTTCCAGCAAC-TAAAC
1 ACTTCAATTTACAGCATTTAAACACT-TCAATTTGCAGC-ACTTTAAC
* * * * * *
7081637 ACTTCAATTTGCAGTACTTAAACACTCCAATTTACAGCACTCTAAC
1 ACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAAC
* * * *
7081683 ACTTCAATTTGCAGCACTTT-AACAGTTCAATTTACAACA-TTTAAAC
1 ACTTCAATTTACAGCA-TTTAAACACTTCAATTTGCAGCACTTT-AAC
*
7081729 ACTTCAATTTGCAGCACTTTAA
1 ACTTCAATTTACAGCA-TTTAA
7081751 CATCTCAATT
Statistics
Matches: 334, Mismatches: 47, Indels: 19
0.83 0.12 0.05
Matches are distributed among these distances:
45 5 0.01
46 285 0.85
47 44 0.13
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.34
Consensus pattern (46 bp):
ACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAAC
Found at i:7081752 original size:23 final size:23
Alignment explanation
Indices: 7081314--7081760 Score: 396
Period size: 23 Copynumber: 19.4 Consensus size: 23
7081304 ATAATCCACA
*
7081314 ACTTCAATTTACAGCA-TTCAAAC
1 ACTTCAATTTACAGCACTT-TAAC
*
7081337 ACTTCAATTTGCAGCACTTTAAC
1 ACTTCAATTTACAGCACTTTAAC
*
7081360 ACTTCAATTTACAGCA-TTAAAAC
1 ACTTCAATTTACAGCACTT-TAAC
*
7081383 ACTTCAATTTGCAGCACTTTAAC
1 ACTTCAATTTACAGCACTTTAAC
* * **
7081406 ATTTCAATTAACAATA-TTTATAGC
1 ACTTCAATTTACAGCACTTTA-A-C
* *
7081430 ACTTCAATTTGCAACA-TTTAAGC
1 ACTTCAATTTACAGCACTTTAA-C
*
7081453 ACTTCAATTTACAGCA-TTCAAAC
1 ACTTCAATTTACAGCACTT-TAAC
*
7081476 ACTTCAATTTGCAGCACTTTAAC
1 ACTTCAATTTACAGCACTTTAAC
* * *
7081499 ATTTCAATTAACAACA-TTTAAAC
1 ACTTCAATTTACAGCACTTT-AAC
*
7081522 ACTTCAATTTGCAGCACTTTAAC
1 ACTTCAATTTACAGCACTTTAAC
*
7081545 ACTTCAATTTACAGCA-TTAAAAC
1 ACTTCAATTTACAGCACTT-TAAC
* *
7081568 ACTTTAATTTGCAGCACTTTAAC
1 ACTTCAATTTACAGCACTTTAAC
* * *
7081591 ATTTCAATTAACAACA-TTTAA-
1 ACTTCAATTTACAGCACTTTAAC
* *
7081612 ACATCTCAATTTCCAGCAAC-TAAAC
1 AC-T-TCAATTTACAGC-ACTTTAAC
* * *
7081637 ACTTCAATTTGCAGTACTTAAAC
1 ACTTCAATTTACAGCACTTTAAC
* *
7081660 ACTCCAATTTACAGCACTCTAAC
1 ACTTCAATTTACAGCACTTTAAC
*
7081683 ACTTCAATTTGCAGCACTTTAAC
1 ACTTCAATTTACAGCACTTTAAC
* *
7081706 AGTTCAATTTACAACA-TTTAAAC
1 ACTTCAATTTACAGCACTTT-AAC
*
7081729 ACTTCAATTTGCAGCACTTTAAC
1 ACTTCAATTTACAGCACTTTAAC
7081752 A-TCTCAATT
1 ACT-TCAATT
7081761 AACAACATTT
Statistics
Matches: 345, Mismatches: 59, Indels: 40
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.00
22 23 0.07
23 281 0.81
24 38 0.11
25 2 0.01
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.34
Consensus pattern (23 bp):
ACTTCAATTTACAGCACTTTAAC
Found at i:7082154 original size:12 final size:12
Alignment explanation
Indices: 7082139--7082188 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
7082129 ACACACACAT
7082139 ATTAACATCTCA
1 ATTAACATCTCA
*
7082151 ATTAACA--ACA
1 ATTAACATCTCA
* *
7082161 TTTATACACCTCA
1 ATTA-ACATCTCA
7082174 ATTAACATCTCA
1 ATTAACATCTCA
7082186 ATT
1 ATT
7082189 TCCGGCAACT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
10 5 0.17
11 3 0.10
12 17 0.57
13 5 0.17
ACGTcount: A:0.42, C:0.24, G:0.00, T:0.34
Consensus pattern (12 bp):
ATTAACATCTCA
Found at i:7083417 original size:15 final size:15
Alignment explanation
Indices: 7083397--7083426 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7083387 CTTGAATTAA
7083397 AAGAAAACCAGTAGG
1 AAGAAAACCAGTAGG
7083412 AAGAAAACCAGTAGG
1 AAGAAAACCAGTAGG
7083427 TTACCTTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.13, G:0.27, T:0.07
Consensus pattern (15 bp):
AAGAAAACCAGTAGG
Found at i:7085224 original size:136 final size:136
Alignment explanation
Indices: 7084980--7085264 Score: 534
Period size: 136 Copynumber: 2.1 Consensus size: 136
7084970 CATTGGGCCT
** *
7084980 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAAAGCCCTTTTTAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
7085045 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
7085110 ATATGC
131 ATATGC
*
7085116 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
7085181 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
7085246 ATATGC
131 ATATGC
7085252 AAGCCCATTTGGG
1 AAGCCCATTTGGG
7085265 GAGACTACTC
Statistics
Matches: 145, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
136 145 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:7087138 original size:25 final size:25
Alignment explanation
Indices: 7087044--7087177 Score: 223
Period size: 26 Copynumber: 5.2 Consensus size: 25
7087034 CATGAAATTC
*
7087044 TTATCATGAAACATTTACCTAACCCA
1 TTATCATG-AACATTTACCTAACCTA
*
7087070 TTATCATGAAACATTTACCTAACCCA
1 TTATCATG-AACATTTACCTAACCTA
7087096 TTATCATGGAACATTTACCTAACCTA
1 TTATCAT-GAACATTTACCTAACCTA
7087122 TTATCATGAACATTTACCTAACCTA
1 TTATCATGAACATTTACCTAACCTA
7087147 TTATCATGAACATTTACCTAACCTA
1 TTATCATGAACATTTACCTAACCTA
7087172 TTATCA
1 TTATCA
7087178 ATTTGTATCA
Statistics
Matches: 106, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
25 49 0.46
26 56 0.53
27 1 0.01
ACGTcount: A:0.37, C:0.25, G:0.04, T:0.34
Consensus pattern (25 bp):
TTATCATGAACATTTACCTAACCTA
Found at i:7087181 original size:20 final size:22
Alignment explanation
Indices: 7087053--7087178 Score: 108
Period size: 25 Copynumber: 5.1 Consensus size: 22
7087043 CTTATCATGA
*
7087053 AACATTTACCTAACCCATTATC
1 AACATTTACCTAACCTATTATC
*
7087075 ATGAAACATTTACCTAACCCATTATC
1 ----AACATTTACCTAACCTATTATC
7087101 ATGGAACATTTACCTAACCTATTATC
1 ----AACATTTACCTAACCTATTATC
7087127 ATGAACATTTACCTAACCTATTATC
1 ---AACATTTACCTAACCTATTATC
7087152 ATGAACATTTACCTAACCTATTATC
1 ---AACATTTACCTAACCTATTATC
7087177 AA
1 AA
7087179 TTTGTATCAA
Statistics
Matches: 96, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
22 2 0.02
25 48 0.50
26 46 0.48
ACGTcount: A:0.37, C:0.25, G:0.04, T:0.33
Consensus pattern (22 bp):
AACATTTACCTAACCTATTATC
Found at i:7089647 original size:25 final size:25
Alignment explanation
Indices: 7089581--7089685 Score: 185
Period size: 25 Copynumber: 4.2 Consensus size: 25
7089571 TGAAATTCCC
7089581 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAA-CCATT
7089607 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAA-CCATT
7089633 ATCAT-GAACATTTACCTAACCATT
1 ATCATGGAACATTTACCTAACCATT
7089657 ATCATGGAACATTTACCTAACCATT
1 ATCATGGAACATTTACCTAACCATT
7089682 ATCA
1 ATCA
7089686 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
24 10 0.13
25 37 0.47
26 31 0.40
ACGTcount: A:0.36, C:0.26, G:0.07, T:0.31
Consensus pattern (25 bp):
ATCATGGAACATTTACCTAACCATT
Found at i:7097375 original size:60 final size:60
Alignment explanation
Indices: 7097302--7097438 Score: 163
Period size: 60 Copynumber: 2.3 Consensus size: 60
7097292 CAAAGTTAAC
* *
7097302 TGGGCCTTAGCCCATATCAATATTAATCTGGG-TCATAGCCC-CTTACAATATC-AGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCT-ATAGCCCTATTACAA-ATCGAGA-TATAT
* * *
7097363 TGGGCCTAGCCCATATCAGTATCAATCTGGGCTGTAGCCCTATTACAAGTCGAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCTATAGCCCTATTACAAATCGAGATATAT
*
7097423 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
7097439 TGACACAGTT
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
60 51 0.76
61 16 0.24
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCTATAGCCCTATTACAAATCGAGATATAT
Found at i:7097456 original size:20 final size:19
Alignment explanation
Indices: 7097431--7097486 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
7097421 ATTGGGCCTT
*
7097431 GCCCATATTGACACAGTTGG
1 GCCCATATTAACACAGTT-G
* *
7097451 GCCCATTTTAATACAGTTG
1 GCCCATATTAACACAGTTG
* *
7097470 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
7097487 CTCATATGAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (19 bp):
GCCCATATTAACACAGTTG
Found at i:7097823 original size:26 final size:27
Alignment explanation
Indices: 7097794--7097865 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
7097784 TATGACGGTC
*
7097794 ATTTTGC-ACCTAGGGGTAAAACGATA
1 ATTTTGCTACCTAAGGGTAAAACGATA
* *
7097820 ATTTTTCTACTTAAGGGTAAAACGATA
1 ATTTTGCTACCTAAGGGTAAAACGATA
* *
7097847 ATTTTCCTACTTAAGGGTA
1 ATTTTGCTACCTAAGGGTA
7097866 TTCTAGTAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
26 6 0.15
27 35 0.85
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (27 bp):
ATTTTGCTACCTAAGGGTAAAACGATA
Found at i:7097877 original size:27 final size:27
Alignment explanation
Indices: 7097807--7097865 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
7097797 TTGCACCTAG
*
7097807 GGGTAAAACGATAATTTTTCTACTTAA
1 GGGTAAAACGATAATTTTCCTACTTAA
7097834 GGGTAAAACGATAATTTTCCTACTTAA
1 GGGTAAAACGATAATTTTCCTACTTAA
7097861 GGGTA
1 GGGTA
7097866 TTCTAGTAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.34
Consensus pattern (27 bp):
GGGTAAAACGATAATTTTCCTACTTAA
Found at i:7100395 original size:26 final size:26
Alignment explanation
Indices: 7100362--7100443 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
7100352 TGAAATTCCC
7100362 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
7100388 ATTATGGAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
*
7100414 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
7100440 ATCA
1 ATCA
7100444 ATTTGTATCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:7101752 original size:7 final size:7
Alignment explanation
Indices: 7101740--7101868 Score: 73
Period size: 7 Copynumber: 18.1 Consensus size: 7
7101730 ACTAATTAAT
7101740 CTAAACC
1 CTAAACC
7101747 CTAAACC
1 CTAAACC
*
7101754 TCTTAACCC
1 -C-TAAACC
*
7101763 CT-ATCC
1 CTAAACC
*
7101769 CATAAACA
1 C-TAAACC
*
7101777 CTAAACT
1 CTAAACC
7101784 CTAAACC
1 CTAAACC
*
7101791 CTTAACC
1 CTAAACC
* *
7101798 TTTAACC
1 CTAAACC
*
7101805 CCAAACC
1 CTAAACC
*
7101812 CTTACACC
1 C-TAAACC
* *
7101820 TTAAACT
1 CTAAACC
7101827 CT-AACC
1 CTAAACC
*
7101833 CTAACCC
1 CTAAACC
7101840 CTAAACC
1 CTAAACC
*
7101847 CTAAATC
1 CTAAACC
* *
7101854 ATAATCC
1 CTAAACC
7101861 CTAAACC
1 CTAAACC
7101868 C
1 C
7101869 ATAATTCATC
Statistics
Matches: 90, Mismatches: 26, Indels: 12
0.70 0.20 0.09
Matches are distributed among these distances:
6 9 0.10
7 67 0.74
8 9 0.10
9 5 0.06
ACGTcount: A:0.37, C:0.40, G:0.00, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:7101937 original size:21 final size:21
Alignment explanation
Indices: 7101911--7101995 Score: 89
Period size: 21 Copynumber: 3.9 Consensus size: 21
7101901 ACTCCTAAAC
*
7101911 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
* * *
7101932 CTTAAACTATAGTTAACTCATAAAC
1 CTTAAACCATA---AAC-CATATAT
*
7101957 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
7101978 CTTAAACCATAAACCATA
1 CTTAAACCATAAACCATA
7101996 AACTATAATG
Statistics
Matches: 51, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
21 31 0.61
22 3 0.06
24 3 0.06
25 14 0.27
ACGTcount: A:0.45, C:0.26, G:0.01, T:0.28
Consensus pattern (21 bp):
CTTAAACCATAAACCATATAT
Found at i:7101948 original size:46 final size:46
Alignment explanation
Indices: 7101895--7101984 Score: 171
Period size: 46 Copynumber: 2.0 Consensus size: 46
7101885 CTTCAAATAC
*
7101895 TAGTTAACTCCTAAACCTTAAACCCTAAACCATATATCTTAAACTA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACTA
7101941 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAAC
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAAC
7101985 CATAAACCAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.42, C:0.26, G:0.02, T:0.30
Consensus pattern (46 bp):
TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACTA
Found at i:7101964 original size:7 final size:7
Alignment explanation
Indices: 7101950--7102003 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
7101940 ATAGTTAACT
7101950 CATAAAC
1 CATAAAC
*
7101957 CTTAAAC
1 CATAAAC
*
7101964 CCTAAAC
1 CATAAAC
* *
7101971 CATATAT
1 CATAAAC
*
7101978 CTTAAAC
1 CATAAAC
7101985 CATAAAC
1 CATAAAC
7101992 CATAAAC
1 CATAAAC
*
7101999 TATAA
1 CATAA
7102004 TGATAATTAA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (7 bp):
CATAAAC
Found at i:7102204 original size:41 final size:41
Alignment explanation
Indices: 7102159--7102279 Score: 170
Period size: 41 Copynumber: 3.0 Consensus size: 41
7102149 GTTATATGAC
* * * *
7102159 TTTTAGCGGCATTTTACTAAAAGCGCTGCTAATGTTCTGGT
1 TTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCTGGT
* *
7102200 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCCCTGGT
1 TTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCTGGT
* *
7102241 TTTTAGCGGCGTTTTGCAAAAAGTGCCGCTAATGCTCTG
1 TTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCTG
7102280 TTTAAAAAAC
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 71 1.00
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.34
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCTGGT
Found at i:7116907 original size:12 final size:12
Alignment explanation
Indices: 7116889--7116919 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
7116879 TTCTATTTCA
7116889 AAAAAAAGAAAAG
1 AAAAAAA-AAAAG
7116902 AAAAAAAAAAAG
1 AAAAAAAAAAAG
7116914 AAAAAA
1 AAAAAA
7116920 TGGAGAGGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAG
Found at i:7118066 original size:132 final size:132
Alignment explanation
Indices: 7117824--7118127 Score: 509
Period size: 132 Copynumber: 2.3 Consensus size: 132
7117814 CAAAGAAATA
7117824 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * ** *
7117889 ACAGTGAAGCAGATTGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAACAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
7117954 GC
131 GC
* *
7117956 AGATTTGGCATCCCTGTGTTTATATGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * *
7118021 ACAGCGAAACAGATCAAATATTTTAACATGGCATCCCTGTTTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAACAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
7118086 GC
131 GC
*
7118088 AGATTTGGCATCCCTGTGTTTACAGGGAACAAATCGAAGA
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGA
7118128 CATAGTAGAT
Statistics
Matches: 160, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 160 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
ACAGCGAAACAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GC
Found at i:7118127 original size:44 final size:44
Alignment explanation
Indices: 7117824--7118127 Score: 274
Period size: 44 Copynumber: 6.9 Consensus size: 44
7117814 CAAAGAAATA
7117824 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
* * * * * * * **
7117868 AGATCTGACA-CTCCTGTGCTTACAGTGAAGCAGATTGAAGATTTC
1 AGATTTGGCATC-CCTGTGTTTATAGGGAA-CAAATCGAAGATAGC
* *
7117913 AGCA--TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
*
7117956 AGATTTGGCATCCCTGTGTTTATATGGAACAAATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
* * * * * * * * * ***
7118000 AGATCTGACATTCCTGTGCTTACAGCGAAACAGATCAAATATTTT
1 AGATTTGGCATCCCTGTGTTTATAG-GGAACAAATCGAAGATAGC
** * * *
7118045 A-ACATGGCATCCCTGTTTTTATAGGGAACAAGTTGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
*
7118088 AGATTTGGCATCCCTGTGTTTACAGGGAACAAATCGAAGA
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGA
7118128 CATAGTAGAT
Statistics
Matches: 197, Mismatches: 55, Indels: 16
0.74 0.21 0.06
Matches are distributed among these distances:
42 1 0.01
43 25 0.13
44 143 0.73
45 27 0.14
46 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
Found at i:7118327 original size:87 final size:86
Alignment explanation
Indices: 7118232--7118535 Score: 244
Period size: 87 Copynumber: 3.5 Consensus size: 86
7118222 AGGTCTAACC
* *
7118232 TTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAAT
1 TTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAA-
7118297 TGAAGACATAGCAGATTTGACT
65 TGAAGACATAGCAGATTTGACT
* ** * ** * *
7118319 TTCGGATGTTCTCACACCAAAGCAGATCCAAGATAATAGATCTGGCA-TCTT-CATTTA-GACGA
1 TTCAGATGTT-T-ACACTGAAGCAGATCCAAG---AT-GATTTGGCATTCTTGTGTTTACAAGGA
* * * * * *
7118381 AGAGCA-G-ATACATAGCAGATCTAACA
60 ACA-AATGAAGACATAGCAGATTTGACT
* * * *
7118407 TTCAGATGATTT-TACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAA
1 TTCAGATG-TTTACACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAA
* *
7118471 TCGAAGACACAGCAGATTTGGCT
65 T-GAAGACATAGCAGATTTGACT
* *
7118494 TTCACG-TGTTTACGCTGAAGCAGATCTAAGATGATTTGGCAT
1 TTCA-GATGTTTACACTGAAGCAGATCCAAGATGATTTGGCAT
7118536 CTCTGTATTG
Statistics
Matches: 162, Mismatches: 39, Indels: 32
0.70 0.17 0.14
Matches are distributed among these distances:
82 8 0.05
83 5 0.03
84 4 0.02
85 4 0.02
86 19 0.12
87 55 0.34
88 25 0.15
89 18 0.11
90 5 0.03
91 5 0.03
92 6 0.04
93 8 0.05
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (86 bp):
TTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAAT
GAAGACATAGCAGATTTGACT
Found at i:7118387 original size:175 final size:175
Alignment explanation
Indices: 7118089--7118497 Score: 613
Period size: 175 Copynumber: 2.3 Consensus size: 175
7118079 GAAGATAGCA
* * *
7118089 GATTTGGCATCCCTGTGTTTACAGGGAACAAATCGAAGACATAGTAGATTTGACTTTCAAATGTT
1 GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCAAATGTT
* * * *
7118154 CTCACACTAAAGCAGATCCAAGATAACAAATCTGGCATCTCCATTTCGACGGAGAGCAGGTACAT
66 CTCACACCAAAGCAGATCCAAGATAACAAATCTGGCATCTCCATTTAGACGAAGAGCAGATACAT
* * *
7118219 AGCAGGTCTAACCTTCAGATG-TTTATACTGAAGTAGATCCAAGAT
131 AGCAGATCTAACATTCAGATGATTT-TACTGAAGCAGATCCAAGAT
* * **
7118264 GATTTGGCATTCTTGTGTTTACAAGGAACAAATTGAAGACATAGCAGATTTGACTTTCGGATGTT
1 GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCAAATGTT
* * *
7118329 CTCACACCAAAGCAGATCCAAGATAATAGATCTGGCATCTTCATTTAGACGAAGAGCAGATACAT
66 CTCACACCAAAGCAGATCCAAGATAACAAATCTGGCATCTCCATTTAGACGAAGAGCAGATACAT
7118394 AGCAGATCTAACATTCAGATGATTTTACTGAAGCAGATCCAAGAT
131 AGCAGATCTAACATTCAGATGATTTTACTGAAGCAGATCCAAGAT
* * * *
7118439 GATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACACAGCAGATTTGGCTTTCA
1 GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCA
7118498 CGTGTTTACG
Statistics
Matches: 209, Mismatches: 24, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
175 206 0.99
176 3 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.27
Consensus pattern (175 bp):
GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCAAATGTT
CTCACACCAAAGCAGATCCAAGATAACAAATCTGGCATCTCCATTTAGACGAAGAGCAGATACAT
AGCAGATCTAACATTCAGATGATTTTACTGAAGCAGATCCAAGAT
Found at i:7118400 original size:88 final size:88
Alignment explanation
Indices: 7118127--7118438 Score: 221
Period size: 88 Copynumber: 3.6 Consensus size: 88
7118117 CAAATCGAAG
* * * *
7118127 ACATAGTAGATTTGACTTTCAAATGTTCTCACACTAAAGCAGATCCAAGATAACAAATCTGGCAT
1 ACATAGCAGATTTGACTTTCAGATGTTCTCACACTAAAGCAGATCCAAGATAATAGATCTGGCAT
* * * *
7118192 CTCCATTTCGACGGAGAGCAGGT
66 CTTCATTTAGACGAAGAGCAGAT
* * * * * * * *
7118215 ACATAGCAGGTCTAACCTTCAGATGTT-T-ATACTGAAGTAGATCCAAG---AT-GATTTGGCAT
1 ACATAGCAGATTTGACTTTCAGATGTTCTCACACTAAAGCAGATCCAAGATAATAGATCTGGCA-
** * * * * *
7118274 TCTTGTGTTTACAAGGAACA-AATTGAAG
65 TCTT-CATTTA-GACGAAGAGCA--G-AT
* *
7118302 ACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGATAATAGATCTGGCAT
1 ACATAGCAGATTTGACTTTCAGATGTTCTCACACTAAAGCAGATCCAAGATAATAGATCTGGCAT
7118367 CTTCATTTAGACGAAGAGCAGAT
66 CTTCATTTAGACGAAGAGCAGAT
* * * * *
7118390 ACATAGCAGATCTAACATTCAGATGATT-T--TACTGAAGCAGATCCAAGAT
1 ACATAGCAGATTTGACTTTCAGATG-TTCTCACACTAAAGCAGATCCAAGAT
7118439 GATTTGGCAT
Statistics
Matches: 163, Mismatches: 47, Indels: 30
0.68 0.20 0.12
Matches are distributed among these distances:
82 7 0.04
83 4 0.02
84 4 0.02
85 4 0.02
86 34 0.21
87 23 0.14
88 45 0.28
89 18 0.11
90 5 0.03
91 5 0.03
92 6 0.04
93 8 0.05
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (88 bp):
ACATAGCAGATTTGACTTTCAGATGTTCTCACACTAAAGCAGATCCAAGATAATAGATCTGGCAT
CTTCATTTAGACGAAGAGCAGAT
Found at i:7118963 original size:19 final size:19
Alignment explanation
Indices: 7118939--7119000 Score: 97
Period size: 19 Copynumber: 3.2 Consensus size: 19
7118929 AATCTTTAAG
7118939 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
7118958 GATATGCAATATTAGATAT
1 GATATGCAATCTTAGATAT
7118977 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
7118998 GAT
1 GAT
7119001 CTTGTAATCT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
19 30 0.77
21 9 0.23
ACGTcount: A:0.39, C:0.08, G:0.18, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:7121421 original size:15 final size:16
Alignment explanation
Indices: 7121401--7121460 Score: 58
Period size: 15 Copynumber: 4.0 Consensus size: 16
7121391 CTAATTAAGC
*
7121401 TTAAAGTTTTATT-AA
1 TTAAAGTTTAATTAAA
7121416 TTAAAGTTTAATTAAA
1 TTAAAGTTTAATTAAA
*
7121432 TT-AA-TTATAATT-AG
1 TTAAAGTT-TAATTAAA
7121446 TT-AAGTTTAATTAAA
1 TTAAAGTTTAATTAAA
7121461 GTATAAAAGT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
14 12 0.32
15 22 0.58
16 4 0.11
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (16 bp):
TTAAAGTTTAATTAAA
Done.