Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 270 of 444
Found at i:77619037 original size:47 final size:47
Alignment explanation
Indices: 77618968--77619189 Score: 230
Period size: 47 Copynumber: 4.8 Consensus size: 47
77618958 CATCCATAAG
77618968 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
* * *
77619015 CGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA
77619060 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
1 -TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
* * * *
77619108 TAAACTTGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCATCCATAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA
*
77619153 GTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTA
1 -TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA
77619190 AATATCCTAA
Statistics
Matches: 145, Mismatches: 13, Indels: 31
0.77 0.07 0.16
Matches are distributed among these distances:
42 4 0.03
43 8 0.06
44 4 0.03
45 5 0.03
46 55 0.38
47 56 0.39
48 3 0.02
49 3 0.02
50 5 0.03
51 2 0.01
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (47 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:77625144 original size:90 final size:92
Alignment explanation
Indices: 77624979--77625145 Score: 286
Period size: 90 Copynumber: 1.8 Consensus size: 92
77624969 CCCATAAGCG
*
77624979 AACTCGGACTCAACTCAATGAGCTCAGGCATTCGCATCCATAAGTGAACTCGACTCAACTCAACG
1 AACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGACTCAACTCAACG
77625044 AGTTCGGATGCCTAGTTACATCTCACA
66 AGTTCGGATGCCTAGTTACATCTCACA
*
77625071 AACTCGGACTCAACTCAACGAGTTC-GG-ATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTC-GACTCAACTCAAC
77625134 GAGTTC-GATGCC
65 GAGTTCGGATGCC
77625146 CAAATATCCT
Statistics
Matches: 72, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
90 28 0.39
91 21 0.29
92 23 0.32
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (92 bp):
AACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATCTCACA
Found at i:77630256 original size:27 final size:28
Alignment explanation
Indices: 77630200--77630269 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
77630190 AAATTTGTAC
77630200 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
77630228 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
77630255 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
77630270 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:77634260 original size:24 final size:24
Alignment explanation
Indices: 77634184--77634260 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
77634174 GATAAGGCCT
77634184 AATGGCCGATGTGATGAATGTGAA
1 AATGGCCGATGTGATGAATGTGAA
*** * * *
77634208 AAT-GTATATAT-ATGAGATGAGGCCA
1 AATGGCCGATGTGATGA-ATG-TG-AA
77634233 AATGGCCGATGTGATGAATGTGAA
1 AATGGCCGATGTGATGAATGTGAA
77634257 AATG
1 AATG
77634261 TATATATATG
Statistics
Matches: 36, Mismatches: 12, Indels: 10
0.62 0.21 0.17
Matches are distributed among these distances:
22 4 0.11
23 7 0.19
24 9 0.25
25 5 0.14
26 7 0.19
27 4 0.11
ACGTcount: A:0.36, C:0.08, G:0.30, T:0.26
Consensus pattern (24 bp):
AATGGCCGATGTGATGAATGTGAA
Found at i:77634880 original size:49 final size:49
Alignment explanation
Indices: 77634105--77634872 Score: 1119
Period size: 49 Copynumber: 15.7 Consensus size: 49
77634095 ATCAAGATTC
* * * *
77634105 GTGAAAGTATATGTATATGTGATGAGGCCTAATGGCCAATGTGGTGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
77634154 GTGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * *
77634203 GTGAAAATGTATATATATGAGATGAGGCCAAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
77634252 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
77634301 GTGAAAATGTA--TATATGAGATGAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
77634348 GTGAAA-TGTATATATATGAGATGAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * *
77634396 GTGAAAATGTATATATATGTGATGAGGCCTAATTGCCGATGTGGTGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
77634445 GTGAAAGTATATGTATATGTGATAAGGTCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * *
77634494 GTGAAAATGTATATATATGAGATGAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
77634543 GTGAAAGTATATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
77634592 GTGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
** *
77634641 GTGAAAGCATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
77634690 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
77634739 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
77634788 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * *
77634837 GTGAAAGTGTATATATATGTGGTAAAGCCGAATGGC
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
77634873 TAATGTGAAT
Statistics
Matches: 674, Mismatches: 42, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
46 4 0.01
47 41 0.06
48 42 0.06
49 587 0.87
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:77634976 original size:37 final size:36
Alignment explanation
Indices: 77634921--77635007 Score: 129
Period size: 37 Copynumber: 2.3 Consensus size: 36
77634911 AACTTGGAAA
77634921 TATGTTCCGGGTGAGACCCGATGACTACGTGTAGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTAGAGAT
* *
77634959 TATGTCCGGGTACGACCCGATGACTATGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTAGAGAT
77634996 TATGTCCGGGTA
1 TATGTCCGGGTA
77635008 AGACTTTGTA
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
36 1 0.02
37 41 0.89
38 4 0.09
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.28
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTAGAGAT
Found at i:77642691 original size:40 final size:40
Alignment explanation
Indices: 77642592--77642782 Score: 260
Period size: 40 Copynumber: 4.8 Consensus size: 40
77642582 TGGATGATAA
* * * * **
77642592 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
77642632 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
77642671 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * *
77642711 CTGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
77642751 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
77642783 AGCTATATCC
Statistics
Matches: 136, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 33 0.24
40 101 0.74
41 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:77646011 original size:88 final size:88
Alignment explanation
Indices: 77645860--77646028 Score: 284
Period size: 88 Copynumber: 1.9 Consensus size: 88
77645850 TTGTTTGATT
* *
77645860 AGTTGAAATGAGCTGCTGTGTTTTCAAAAATAGATTTGAGATCGGGCTATTATCAAGTGCGAGTA
1 AGTTGAAATGAGCTACTGTGTTTTCAAAAATAGATTTGAGATCGGGCTATTATCAAGTACGAGTA
* *
77645925 AAAGTCTCAGACATTTAGAAATC
66 AAAGACTCAAACATTTAGAAATC
* *
77645948 AGTTGAAATGAGCTATTGTGTTTTCAAAAATAGATTTGAGATCGGGCTATTATCAATTACGAGTA
1 AGTTGAAATGAGCTACTGTGTTTTCAAAAATAGATTTGAGATCGGGCTATTATCAAGTACGAGTA
77646013 AAAGACTCAAACATTT
66 AAAGACTCAAACATTT
77646029 CAAAAACTGC
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 75 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.32
Consensus pattern (88 bp):
AGTTGAAATGAGCTACTGTGTTTTCAAAAATAGATTTGAGATCGGGCTATTATCAAGTACGAGTA
AAAGACTCAAACATTTAGAAATC
Found at i:77651859 original size:24 final size:24
Alignment explanation
Indices: 77651803--77651898 Score: 104
Period size: 24 Copynumber: 3.9 Consensus size: 24
77651793 GACGCACCGT
* * *
77651803 AGCTCGTATGAGCTTACCGATATATC
1 AGCTCGTAAGAGCTTACTG-T-TCTC
77651829 AGCTCGTAAGAGCTTACTGTTCTC
1 AGCTCGTAAGAGCTTACTGTTCTC
* * *
77651853 AGCTCGTCAGAGCTTACTATTTTC
1 AGCTCGTAAGAGCTTACTGTTCTC
77651877 AGCTCG-ATAGAGCTTACTGTTC
1 AGCTCGTA-AGAGCTTACTGTTC
77651899 GTTAACTCAG
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
24 42 0.70
25 1 0.02
26 17 0.28
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (24 bp):
AGCTCGTAAGAGCTTACTGTTCTC
Found at i:77657977 original size:24 final size:23
Alignment explanation
Indices: 77657950--77658009 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 23
77657940 AGCTCATAAG
*
77657950 AGCTTATTGTTCTCAGCTCGTTAA
1 AGCTTATTGTTC-CAGCTCGGTAA
*
77657974 AGCTTACTAT-TTCCAGCTCGGTAG
1 AGCTTA-T-TGTTCCAGCTCGGTAA
*
77657998 AGCTTACTGTTC
1 AGCTTATTGTTC
77658010 ATCAACTCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
22 1 0.03
23 3 0.10
24 21 0.70
25 4 0.13
26 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.38
Consensus pattern (23 bp):
AGCTTATTGTTCCAGCTCGGTAA
Found at i:77658192 original size:20 final size:20
Alignment explanation
Indices: 77658154--77658192 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
77658144 ATTCTGCTAA
*
77658154 TGGTTATACAGATGAATTGC
1 TGGTTATACAAATGAATTGC
* *
77658174 TGGTTATATAAATGGATTG
1 TGGTTATACAAATGAATTG
77658193 TCGATAATAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.05, G:0.26, T:0.38
Consensus pattern (20 bp):
TGGTTATACAAATGAATTGC
Found at i:77660372 original size:2 final size:2
Alignment explanation
Indices: 77660365--77660401 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
77660355 TGGTATCTTT
77660365 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
77660402 CCATACCAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:77661316 original size:2 final size:2
Alignment explanation
Indices: 77661309--77661343 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
77661299 TAAAATTTGC
*
77661309 AT AT AT AT AT AT AT AT AT AT AT AT A- AA AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77661344 TAACTCATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:77662503 original size:18 final size:18
Alignment explanation
Indices: 77662481--77662544 Score: 65
Period size: 18 Copynumber: 3.6 Consensus size: 18
77662471 GTGGTGGTCT
77662481 AGGTGGTGGTTTTGGTGG
1 AGGTGGTGGTTTTGGTGG
* * *
77662499 TGGTGGAGGTATTGGTGG
1 AGGTGGTGGTTTTGGTGG
* *
77662517 AGGAGGTGGTTTAGGTGG
1 AGGTGGTGGTTTTGGTGG
* *
77662535 GGGTGCTGGT
1 AGGTGGTGGT
77662545 GGAGGCTTTG
Statistics
Matches: 35, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.09, C:0.02, G:0.56, T:0.33
Consensus pattern (18 bp):
AGGTGGTGGTTTTGGTGG
Found at i:77662575 original size:18 final size:18
Alignment explanation
Indices: 77662536--77662641 Score: 70
Period size: 18 Copynumber: 5.6 Consensus size: 18
77662526 TTTAGGTGGG
* *
77662536 GGTGCTGGTGGA-GGCTTT
1 GGTGGTGGTGGAGGGC-TA
77662554 GGTGGTGGTGGAGGGCTA
1 GGTGGTGGTGGAGGGCTA
*
77662572 GGTGGCGGTGGTGGAGGAGGATTA
1 GGT---GGTGGTGGA-G-GG-CTA
* * *
77662596 GGTGGTGGAGGAGGTCTT
1 GGTGGTGGTGGAGGGCTA
* *
77662614 GGGGGTGGTGGAGGCCTA
1 GGTGGTGGTGGAGGGCTA
77662632 GGTGGTGGTG
1 GGTGGTGGTG
77662642 CGGGAGGAGG
Statistics
Matches: 69, Mismatches: 12, Indels: 14
0.73 0.13 0.15
Matches are distributed among these distances:
18 39 0.57
19 4 0.06
20 1 0.01
21 17 0.25
22 1 0.01
23 2 0.03
24 5 0.07
ACGTcount: A:0.10, C:0.07, G:0.58, T:0.25
Consensus pattern (18 bp):
GGTGGTGGTGGAGGGCTA
Found at i:77662576 original size:30 final size:30
Alignment explanation
Indices: 77662469--77662576 Score: 76
Period size: 30 Copynumber: 3.6 Consensus size: 30
77662459 GGCATGGCAT
* * * *
77662469 TGGTGGTGGTCTAGGTGGTGGTTTTGGTGG
1 TGGTGGAGGGCTAGGTGGAGGATTTGGTGG
** * ** *
77662499 TGGTGGAGGTATTGGTGGAGGAGGTGGT-T
1 TGGTGGAGGGCTAGGTGGAGGATTTGGTGG
* *
77662528 TAGGTGGGGGTGCT-GGTGGAGGCTTTGGTGG
1 T-GGTGGAGG-GCTAGGTGGAGGATTTGGTGG
77662559 TGGTGGAGGGCTAGGTGG
1 TGGTGGAGGGCTAGGTGG
77662577 CGGTGGTGGA
Statistics
Matches: 58, Mismatches: 16, Indels: 8
0.71 0.20 0.10
Matches are distributed among these distances:
29 4 0.07
30 52 0.90
31 2 0.03
ACGTcount: A:0.08, C:0.04, G:0.56, T:0.31
Consensus pattern (30 bp):
TGGTGGAGGGCTAGGTGGAGGATTTGGTGG
Found at i:77662581 original size:24 final size:24
Alignment explanation
Indices: 77662554--77662600 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
77662544 TGGAGGCTTT
* *
77662554 GGTGGTGGTGGAGGGCTAGGTGGC
1 GGTGGTGGAGGAGGACTAGGTGGC
*
77662578 GGTGGTGGAGGAGGATTAGGTGG
1 GGTGGTGGAGGAGGACTAGGTGG
77662601 TGGAGGAGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.13, C:0.04, G:0.62, T:0.21
Consensus pattern (24 bp):
GGTGGTGGAGGAGGACTAGGTGGC
Found at i:77662609 original size:60 final size:60
Alignment explanation
Indices: 77662552--77662683 Score: 203
Period size: 60 Copynumber: 2.2 Consensus size: 60
77662542 GGTGGAGGCT
*
77662552 TTGGTGGTGGTGGAGGGCTAGGTGGCGGTG-GTGGAGGAGGATTAGGTGGTGGAGGAGGTC
1 TTGGTGGTGGTGGAGGCCTAGGTGGCGGTGCG-GGAGGAGGATTAGGTGGTGGAGGAGGTC
* * *
77662612 TTGGGGGTGGTGGAGGCCTAGGTGGTGGTGCGGGAGGAGGATTAGGTGGTGGAGGTGGTC
1 TTGGTGGTGGTGGAGGCCTAGGTGGCGGTGCGGGAGGAGGATTAGGTGGTGGAGGAGGTC
*
77662672 TTGGTGGAGGTG
1 TTGGTGGTGGTG
77662684 CTGGTGGTGG
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
60 64 0.98
61 1 0.02
ACGTcount: A:0.12, C:0.05, G:0.58, T:0.24
Consensus pattern (60 bp):
TTGGTGGTGGTGGAGGCCTAGGTGGCGGTGCGGGAGGAGGATTAGGTGGTGGAGGAGGTC
Found at i:77662624 original size:42 final size:41
Alignment explanation
Indices: 77662493--77662624 Score: 115
Period size: 42 Copynumber: 3.1 Consensus size: 41
77662483 GTGGTGGTTT
* *
77662493 TGGTGGTGGTGGAGGTATTGGTGGAGGAGGTGGT-TTAGGTGGG
1 TGGTGGTGGTGGAGG-ATTGGTGGTGGAGGAGGTCTT-GG-GGG
* * * * * *
77662536 -GGTGCTGGTGGAGGCTTTGGTGGTGGTGGAGGGCTAGGTGG
1 TGGTGGTGGTGGAGG-ATTGGTGGTGGAGGAGGTCTTGGGGG
* *
77662577 CGGTGGTGGAGGAGGATTAGGTGGTGGAGGAGGTCTTGGGGG
1 TGGTGGTGGTGGAGGATT-GGTGGTGGAGGAGGTCTTGGGGG
77662619 TGGTGG
1 TGGTGG
77662625 AGGCCTAGGT
Statistics
Matches: 69, Mismatches: 17, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
41 4 0.06
42 64 0.93
43 1 0.01
ACGTcount: A:0.11, C:0.04, G:0.59, T:0.27
Consensus pattern (41 bp):
TGGTGGTGGTGGAGGATTGGTGGTGGAGGAGGTCTTGGGGG
Found at i:77662641 original size:21 final size:20
Alignment explanation
Indices: 77662536--77662641 Score: 64
Period size: 21 Copynumber: 5.3 Consensus size: 20
77662526 TTTAGGTGGG
* *
77662536 GGTGCTGGTGGAGGCT--TT
1 GGTGGTGGTGGAGGCTAGGT
77662554 GGTGGTGGTGGAGGGCTAGGT
1 GGTGGTGGTGGA-GGCTAGGT
*
77662575 GGCGGTGGTGGAGG--AGGATT
1 GGTGGTGGTGGAGGCTAGG--T
*
77662595 AGGTGGTGGAGGAGGTCT---T
1 -GGTGGTGGTGGAGG-CTAGGT
*
77662614 GGGGGTGGTGGAGGCCTAGGT
1 GGTGGTGGTGGAGG-CTAGGT
77662635 GGTGGTG
1 GGTGGTG
77662642 CGGGAGGAGG
Statistics
Matches: 67, Mismatches: 9, Indels: 21
0.69 0.09 0.22
Matches are distributed among these distances:
18 28 0.42
19 5 0.07
20 3 0.04
21 31 0.46
ACGTcount: A:0.10, C:0.07, G:0.58, T:0.25
Consensus pattern (20 bp):
GGTGGTGGTGGAGGCTAGGT
Found at i:77662660 original size:78 final size:78
Alignment explanation
Indices: 77662578--77662744 Score: 219
Period size: 78 Copynumber: 2.1 Consensus size: 78
77662568 GCTAGGTGGC
* * * *
77662578 GGTGGTGGAGGAGGAT-TAGGTGGTGGAGGAGGTCTTGGGGGTGGTGGAGGCCTAGGTGGTGGTG
1 GGTGGTGGAGGAGG-TCTAGGTGGAGGAGCAGGTCGTGGAGGTGGTGGAGGCCTAGGTGGTGGTG
77662642 CGGGAGGAGGATTA
65 CGGGAGGAGGATTA
* * * * * * *
77662656 GGTGGTGGAGGTGGTCTTGGTGGAGGTGCTGGTGGTGGAGTTGGTGGAGGCCTGGGTGGTGGTGC
1 GGTGGTGGAGGAGGTCTAGGTGGAGGAGCAGGTCGTGGAGGTGGTGGAGGCCTAGGTGGTGGTGC
77662721 GGGAGGAGGATTA
66 GGGAGGAGGATTA
77662734 GGTGGTGGAGG
1 GGTGGTGGAGG
77662745 TGGTGTTGGT
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
77 1 0.01
78 76 0.99
ACGTcount: A:0.13, C:0.05, G:0.59, T:0.23
Consensus pattern (78 bp):
GGTGGTGGAGGAGGTCTAGGTGGAGGAGCAGGTCGTGGAGGTGGTGGAGGCCTAGGTGGTGGTGC
GGGAGGAGGATTA
Found at i:77662682 original size:24 final size:24
Alignment explanation
Indices: 77662655--77662705 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
77662645 GAGGAGGATT
* *
77662655 AGGTGGTGGAGGTGGTCTTGGTGG
1 AGGTGCTGGAGGTGGACTTGGTGG
* *
77662679 AGGTGCTGGTGGTGGAGTTGGTGG
1 AGGTGCTGGAGGTGGACTTGGTGG
77662703 AGG
1 AGG
77662706 CCTGGGTGGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.10, C:0.04, G:0.59, T:0.27
Consensus pattern (24 bp):
AGGTGCTGGAGGTGGACTTGGTGG
Found at i:77662691 original size:15 final size:15
Alignment explanation
Indices: 77662656--77662695 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
77662646 AGGAGGATTA
*
77662656 GGTGGTGGAGGTGGT
1 GGTGGTGGAGGTGCT
**
77662671 CTTGGTGGAGGTGCT
1 GGTGGTGGAGGTGCT
77662686 GGTGGTGGAG
1 GGTGGTGGAG
77662696 TTGGTGGAGG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.07, C:0.05, G:0.60, T:0.28
Consensus pattern (15 bp):
GGTGGTGGAGGTGCT
Found at i:77662713 original size:24 final size:24
Alignment explanation
Indices: 77662672--77662717 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
77662662 GGAGGTGGTC
*
77662672 TTGGTGGAGGTGCTGGTGGTGGAG
1 TTGGTGGAGGTCCTGGTGGTGGAG
77662696 TTGGTGGAGG-CCTGGGTGGTGG
1 TTGGTGGAGGTCCT-GGTGGTGG
77662718 TGCGGGAGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.07, C:0.07, G:0.59, T:0.28
Consensus pattern (24 bp):
TTGGTGGAGGTCCTGGTGGTGGAG
Found at i:77662863 original size:60 final size:60
Alignment explanation
Indices: 77662799--77663154 Score: 522
Period size: 60 Copynumber: 6.0 Consensus size: 60
77662789 GTCACAAGCT
* * *
77662799 TGGAGGAGCAGGAGGTGGATTGGGCGGTGGTGGGGGACTTGGCGGTGGCCATGGGCTGGG
1 TGGAGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGG
* *
77662859 TGGAGGTGCAGAAGGTAGATTGGGTGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGG
1 TGGAGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGG
* *
77662919 AGGAGGTGCAGGAGGTGGATTGGGTGGTGGT---GGACTTGGCAGTGGCCATGGGCTGGG
1 TGGAGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGG
*
77662976 TGGAGGTGCAGGAGGTGGAGTGGGTGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGG
1 TGGAGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGG
* * * *
77663036 TGGGGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTCGGTGG-GGCCATGGGCTTGG
1 TGGAGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGG
* * * * * *
77663095 TGGAGGTGCAGGAGGTGGACTAGGAGGGGGTGGAGGACTAGGTGGTGGCCATGGGCTGGG
1 TGGAGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGG
77663155 AGGTGGAGGC
Statistics
Matches: 268, Mismatches: 24, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
57 54 0.20
59 52 0.19
60 162 0.60
ACGTcount: A:0.13, C:0.10, G:0.56, T:0.20
Consensus pattern (60 bp):
TGGAGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGG
Found at i:77662965 original size:117 final size:117
Alignment explanation
Indices: 77662800--77663157 Score: 493
Period size: 117 Copynumber: 3.0 Consensus size: 117
77662790 TCACAAGCTT
* * *
77662800 GGAGGAGCAGGAGGTGGATTGGGCGGTGGTGGGGGACTTGGCGGTGGCCATGGGCTGGGTGGAGG
1 GGAGGTGCAGGAGGTGGATT--G-GGTGGTGGTGGACTTGGCAGTGGCCATGGGCTGGGTGGAGG
* * *
77662865 TGCAGAAGGTAGATTGGGTGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGGA
63 TGCAGGAGGTGGACTGGGTGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGGA
77662920 GGAGGTGCAGGAGGTGGATTGGGTGGTGGTGGACTTGGCAGTGGCCATGGGCTGGGTGGAGGTGC
1 GGAGGTGCAGGAGGTGGATTGGGTGGTGGTGGACTTGGCAGTGGCCATGGGCTGGGTGGAGGTGC
* *
77662985 AGGAGGTGGAGTGGGTGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGGT
66 AGGAGGTGGACTGGGTGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGGA
* * * * *
77663037 GGGGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTCGG-TGGGGCCATGGGCTTGGTGGAGG
1 GGAGGTGCAGGAGGTGGATTGGGTGGTGGT---GGACTTGGCAGTGGCCATGGGCTGGGTGGAGG
* * * * *
77663101 TGCAGGAGGTGGACTAGGAGGGGGTGGAGGACTAGGTGGTGGCCATGGGCTGGGA
63 TGCAGGAGGTGGACTGGGTGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGGA
77663156 GG
1 GG
77663158 TGGAGGCGAA
Statistics
Matches: 216, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
117 119 0.55
118 1 0.00
119 70 0.32
120 26 0.12
ACGTcount: A:0.13, C:0.10, G:0.57, T:0.20
Consensus pattern (117 bp):
GGAGGTGCAGGAGGTGGATTGGGTGGTGGTGGACTTGGCAGTGGCCATGGGCTGGGTGGAGGTGC
AGGAGGTGGACTGGGTGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGGA
Found at i:77663016 original size:177 final size:179
Alignment explanation
Indices: 77662799--77663154 Score: 529
Period size: 177 Copynumber: 2.0 Consensus size: 179
77662789 GTCACAAGCT
* *
77662799 TGGAGGAGCAGGAGGTGGATTGGGCGGTGGTGGGGGACTTGGCGGTGGCCATGGGCTGGGTGGAG
1 TGGAGGAGCAGGAGGTGGAGTGGGCGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGGTGGAG
*
77662864 GTGCAGAAGGTAGATTGGGTGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGGAGGAGGTGCA
66 GTGCAGAAGGTAGATTGGGTGGTGGTGGAGGACTCGGCGG-GGCCATGGGCTGGGAGGAGGTGCA
* * * *
77662929 GGAGGTGGA-T-TG-GGTGGTGGTGGACTTGGCAGTGGCCATGGGCTGGG
130 GGAGGTGGACTAGGAGGGGGTGGAGGACTAGGCAGTGGCCATGGGCTGGG
* * *
77662976 TGGAGGTGCAGGAGGTGGAGTGGGTGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGGTGGGG
1 TGGAGGAGCAGGAGGTGGAGTGGGCGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGGTGGAG
* * * * *
77663041 GTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTCGGTGGGGCCATGGGCTTGGTGGAGGTGCAG
66 GTGCAGAAGGTAGATTGGGTGGTGGTGGAGGACTCGGCGGGGCCATGGGCTGGGAGGAGGTGCAG
**
77663106 GAGGTGGACTAGGAGGGGGTGGAGGACTAGGTGGTGGCCATGGGCTGGG
131 GAGGTGGACTAGGAGGGGGTGGAGGACTAGGCAGTGGCCATGGGCTGGG
77663155 AGGTGGAGGC
Statistics
Matches: 159, Mismatches: 17, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
176 31 0.19
177 97 0.61
178 1 0.01
179 30 0.19
ACGTcount: A:0.13, C:0.10, G:0.56, T:0.20
Consensus pattern (179 bp):
TGGAGGAGCAGGAGGTGGAGTGGGCGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGGTGGAG
GTGCAGAAGGTAGATTGGGTGGTGGTGGAGGACTCGGCGGGGCCATGGGCTGGGAGGAGGTGCAG
GAGGTGGACTAGGAGGGGGTGGAGGACTAGGCAGTGGCCATGGGCTGGG
Found at i:77663219 original size:42 final size:42
Alignment explanation
Indices: 77663170--77663274 Score: 147
Period size: 42 Copynumber: 2.5 Consensus size: 42
77663160 GAGGCGAATT
* * * *
77663170 AGGTGGTGGTGCAGGTGGTGGAGGTGGAGTAGGGCTCGGTGG
1 AGGTGGTGGTGCTGGTGGAGGAGCTGGAGGAGGGCTCGGTGG
* *
77663212 AGGTGGTGGTGCTGGAGGAGGAGCTGGAGGAGGGCTTGGTGG
1 AGGTGGTGGTGCTGGTGGAGGAGCTGGAGGAGGGCTCGGTGG
*
77663254 AGTTGGTGGTGCTGGTGGAGG
1 AGGTGGTGGTGCTGGTGGAGG
77663275 TTTTGGAGGT
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.12, C:0.07, G:0.59, T:0.22
Consensus pattern (42 bp):
AGGTGGTGGTGCTGGTGGAGGAGCTGGAGGAGGGCTCGGTGG
Found at i:77663271 original size:18 final size:18
Alignment explanation
Indices: 77663248--77663340 Score: 71
Period size: 18 Copynumber: 5.0 Consensus size: 18
77663238 GAGGAGGGCT
*
77663248 TGGTGGAGTTGGTGGTGC
1 TGGTGGAGTTGGTGGTGG
*
77663266 TGGTGGAGGTTTTGGAGGTGG
1 TGGTGGA-G--TTGGTGGTGG
* * *
77663287 AGGAGGATTTGGTGGTGG
1 TGGTGGAGTTGGTGGTGG
* *
77663305 TGGTGGAGTTGGGGGAGG
1 TGGTGGAGTTGGTGGTGG
*
77663323 AT-TTGGAGTTGGTGGTGG
1 -TGGTGGAGTTGGTGGTGG
77663341 ATTTGGCAAA
Statistics
Matches: 57, Mismatches: 14, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
18 42 0.74
19 2 0.04
21 13 0.23
ACGTcount: A:0.11, C:0.01, G:0.57, T:0.31
Consensus pattern (18 bp):
TGGTGGAGTTGGTGGTGG
Found at i:77663288 original size:48 final size:47
Alignment explanation
Indices: 77663188--77663330 Score: 134
Period size: 48 Copynumber: 3.1 Consensus size: 47
77663178 GTGCAGGTGG
* *
77663188 TGGAGGTGGAGTAGGGCTCGGTGGAGGTGGTGGTGC---TGGAGG--
1 TGGAGGTGGAGGAGGGCTTGGTGGAGGTGGTGGTGCTGGTGGAGGTT
* * *
77663230 AGGAGCTGGAGGAGGGCTTGGTGGAGTTGGTGGTGCTGGTGGAGGTTT
1 TGGAGGTGGAGGAGGGCTTGGTGGAGGTGGTGGTGCTGGTGGAGG-TT
** * * * *
77663278 TGGAGGTGGAGGAGGATTTGGTGGTGGTGGTGGAGTTGGGGGAGGATT
1 TGGAGGTGGAGGAGGGCTTGGTGGAGGTGGTGGTGCTGGTGGAGG-TT
77663326 TGGAG
1 TGGAG
77663331 TTGGTGGTGG
Statistics
Matches: 80, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
42 31 0.39
45 6 0.08
48 43 0.54
ACGTcount: A:0.13, C:0.04, G:0.57, T:0.25
Consensus pattern (47 bp):
TGGAGGTGGAGGAGGGCTTGGTGGAGGTGGTGGTGCTGGTGGAGGTT
Found at i:77663300 original size:30 final size:30
Alignment explanation
Indices: 77663176--77663328 Score: 87
Period size: 30 Copynumber: 5.1 Consensus size: 30
77663166 AATTAGGTGG
* * **
77663176 TGGTGCAGGTGGTGGAGGTGGAGTAGGGCT
1 TGGTGGAGGTGGTGGAGGTGGAGGAGGATT
* * * **
77663206 CGGTGGAGGTGGTGGTGCTGGAGGAGGAGC
1 TGGTGGAGGTGGTGGAGGTGGAGGAGGATT
* * * * *
77663236 TGGAGGAGGGCTTGGTGGAGTTGGTGG-TG--C
1 TGGTGGA-GG--TGGTGGAGGTGGAGGAGGATT
**
77663266 TGGTGGAGGTTTTGGAGGTGGAGGAGGATT
1 TGGTGGAGGTGGTGGAGGTGGAGGAGGATT
* * *
77663296 TGGTGGTGGTGGTGGAGTTGGGGGAGGATT
1 TGGTGGAGGTGGTGGAGGTGGAGGAGGATT
77663326 TGG
1 TGG
77663329 AGTTGGTGGT
Statistics
Matches: 91, Mismatches: 26, Indels: 12
0.71 0.20 0.09
Matches are distributed among these distances:
27 11 0.12
28 1 0.01
29 2 0.02
30 62 0.68
31 2 0.02
32 1 0.01
33 12 0.13
ACGTcount: A:0.12, C:0.05, G:0.58, T:0.25
Consensus pattern (30 bp):
TGGTGGAGGTGGTGGAGGTGGAGGAGGATT
Found at i:77663336 original size:30 final size:30
Alignment explanation
Indices: 77663278--77663346 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
77663268 GTGGAGGTTT
* *
77663278 TGGAGGTGGAGGAGGATTTGGTGGTGGTGG
1 TGGAGTTGGAGGAGGATTTGGAGGTGGTGG
* *
77663308 TGGAGTTGGGGGAGGATTTGGAGTTGGTGG
1 TGGAGTTGGAGGAGGATTTGGAGGTGGTGG
*
77663338 TGGATTTGG
1 TGGAGTTGG
77663347 CAAAGGTGAG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.13, C:0.00, G:0.57, T:0.30
Consensus pattern (30 bp):
TGGAGTTGGAGGAGGATTTGGAGGTGGTGG
Found at i:77663342 original size:18 final size:18
Alignment explanation
Indices: 77663295--77663346 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
77663285 GGAGGAGGAT
*
77663295 TTGGTGGTGG-TGGTGGAG
1 TTGGTGGTGGAT-TTGGAG
* *
77663313 TTGGGGGAGGATTTGGAG
1 TTGGTGGTGGATTTGGAG
77663331 TTGGTGGTGGATTTGG
1 TTGGTGGTGGATTTGG
77663347 CAAAGGTGAG
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
18 27 0.96
19 1 0.04
ACGTcount: A:0.10, C:0.00, G:0.56, T:0.35
Consensus pattern (18 bp):
TTGGTGGTGGATTTGGAG
Found at i:77666375 original size:13 final size:13
Alignment explanation
Indices: 77666359--77666388 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
77666349 CAATTTTGAA
77666359 AATTAATTATTAC
1 AATTAATTATTAC
77666372 AATTAATTATTAC
1 AATTAATTATTAC
77666385 AATT
1 AATT
77666389 TGATTGGTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (13 bp):
AATTAATTATTAC
Found at i:77672808 original size:40 final size:40
Alignment explanation
Indices: 77672753--77672960 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
77672743 TGAATGATAC
* *
77672753 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
77672793 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
77672833 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
77672873 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
77672913 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
77672953 CC-GGCTAA
1 CCGGGCTAA
77672961 ATTCCGAAGA
Statistics
Matches: 146, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 6 0.04
40 138 0.95
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:77679100 original size:30 final size:30
Alignment explanation
Indices: 77679064--77679223 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
77679054 GACAAGATTG
* * * * *
77679064 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
* *
77679094 GCACTAAGTGTGCGAGTTTG---ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
77679122 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
77679151 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
77679181 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
77679210 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
77679224 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 48 0.40
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:77679192 original size:59 final size:57
Alignment explanation
Indices: 77679064--77679223 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
77679054 GACAAGATTG
* * * * * *
77679064 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATACA
*
77679122 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATACA
77679181 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
77679224 GATTCACTAT
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 50 0.54
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATACA
Found at i:77687064 original size:30 final size:30
Alignment explanation
Indices: 77687028--77687187 Score: 186
Period size: 29 Copynumber: 5.5 Consensus size: 30
77687018 GACAAGATTG
* * * * *
77687028 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
* * *
77687058 GCACTAAGAGTGCGAGTTTG---ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
*
77687086 GCACTAAGTGTGTGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
77687115 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
77687145 GCACTAAGTGTACGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
77687174 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
77687188 GATTCACTAT
Statistics
Matches: 114, Mismatches: 11, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
27 2 0.02
28 21 0.18
29 46 0.40
30 43 0.38
31 2 0.02
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:77689166 original size:20 final size:20
Alignment explanation
Indices: 77689141--77689196 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
77689131 ATGAGCTGGA
77689141 GTTGAGCTGGATGTGAACTT
1 GTTGAGCTGGATGTGAACTT
* ** *
77689161 GTTGAGCTAGAACTGAGCTT
1 GTTGAGCTGGATGTGAACTT
* *
77689181 GCTGAGCTGGTTGTGA
1 GTTGAGCTGGATGTGA
77689197 GCTGAACAAG
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.20, C:0.12, G:0.36, T:0.32
Consensus pattern (20 bp):
GTTGAGCTGGATGTGAACTT
Found at i:77690201 original size:24 final size:24
Alignment explanation
Indices: 77690153--77690367 Score: 263
Period size: 24 Copynumber: 9.0 Consensus size: 24
77690143 ACTTTATCAT
*
77690153 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * *
77690178 ATAACTAGGGCAAAAACCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
77690202 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
77690226 ATAACTGGGGTATAAGCCTTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* * * *
77690250 GTAACTGGGGGATAAGTCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
* *
77690274 ATAACAGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
77690298 ATAACTGGGGCATAA-CCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
77690321 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
77690345 ATAACTGGGGCATAAGCCATTTT
1 ATAACTGGGGCATAAGCCCTTTT
77690368 GCACTTCCTC
Statistics
Matches: 167, Mismatches: 21, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
23 23 0.14
24 134 0.80
25 10 0.06
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:77690442 original size:20 final size:20
Alignment explanation
Indices: 77690417--77690483 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
77690407 TTATGAATAC
*
77690417 ATCATGTGCATATCATACGT
1 ATCATGTGCATATCATACAT
77690437 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
77690457 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
77690477 ACCATGT
1 ATCATGT
77690484 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:77697726 original size:24 final size:24
Alignment explanation
Indices: 77697501--77697726 Score: 274
Period size: 24 Copynumber: 9.4 Consensus size: 24
77697491 AGAGGAGGTG
* *
77697501 AGCCATTTTGATAACTGGGGCAAA
1 AGCCCTTTTGATAACTGGGGCATA
* * *
77697525 AACCCTTTTAATAACTGTGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
*
77697549 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
* * *
77697573 AGCCTTTTTAATAATTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
* *
77697597 AG-CCTTTTTAGTAACTGGGGGATA
1 AGCCCTTTTGA-TAACTGGGGCATA
* * *
77697621 AGTCCTTTTTATAACAGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
*
77697645 AGCCCTTTTGATAATTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
* * *
77697669 AGCCCTTTCGATAACTAGGGCATT
1 AGCCCTTTTGATAACTGGGGCATA
77697693 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
77697717 AGCCCTTTTG
1 AGCCCTTTTG
77697727 CACTTCCTCC
Statistics
Matches: 174, Mismatches: 26, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
23 6 0.03
24 160 0.92
25 8 0.05
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (24 bp):
AGCCCTTTTGATAACTGGGGCATA
Found at i:77697800 original size:20 final size:20
Alignment explanation
Indices: 77697775--77697841 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
77697765 TTATGAATAC
*
77697775 ATCATGTGCATATCATACGT
1 ATCATGTGCATATCATACAT
77697795 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
77697815 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
77697835 ACCATGT
1 ATCATGT
77697842 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:77702272 original size:46 final size:47
Alignment explanation
Indices: 77702186--77702307 Score: 137
Period size: 45 Copynumber: 2.6 Consensus size: 47
77702176 TATCAGTGCC
* * *
77702186 GATGCCATGTCCCAGGCATGGTCGTACACT-GACAC-ATCTCATAGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CACTCTCTCATAGCT
*
77702232 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGTCTCA-ATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACTC-TCTCATA-GCT
*
77702278 GATGCCATGCCCCAGACATGGTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
77702308 GGCTCTCTTA
Statistics
Matches: 65, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
44 12 0.18
45 15 0.23
46 15 0.23
47 13 0.20
48 10 0.15
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.25
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCACTCTCTCATAGCT
Found at i:77702306 original size:92 final size:93
Alignment explanation
Indices: 77702182--77702356 Score: 230
Period size: 92 Copynumber: 1.9 Consensus size: 93
77702172 AGCATATCAG
* * *
77702182 TGCCGATGCCATGTCCCAGGCATGGTCGTACACTGACACATC-TCA-TAGCTGATGCATGTCC-C
1 TGCCGATGCCATGCCCCAGACATGGTCGTACACTGACAC-TCTTAAGTAGCTGATGCATG-CCTC
77702244 AGACATGTCTTACACTAGCACTCGTCTCAA
64 AGACATGTCTTACACTAGCACTCGTCTCAA
* * * * *
77702274 TGCCGATGCCATGCCCCAGACATGGTCTTACACTGGCTCTCTTAATGTGGCTGATGCATGCCTTA
1 TGCCGATGCCATGCCCCAGACATGGTCGTACACTGACACTCTTAA-GTAGCTGATGCATGCCTCA
77702339 GACATGTCTTACACTAGC
65 GACATGTCTTACACTAGC
77702357 TCACACAAAT
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
91 2 0.03
92 36 0.51
93 2 0.03
94 31 0.44
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (93 bp):
TGCCGATGCCATGCCCCAGACATGGTCGTACACTGACACTCTTAAGTAGCTGATGCATGCCTCAG
ACATGTCTTACACTAGCACTCGTCTCAA
Found at i:77702334 original size:47 final size:44
Alignment explanation
Indices: 77702229--77702358 Score: 127
Period size: 47 Copynumber: 2.8 Consensus size: 44
77702219 ACATCTCATA
* *
77702229 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAAT
1 GCTGATGCATGCCCCAGACATGTCTTACACT-G-GCTCGTCTCAAT
* *
77702275 GCCGATGCCATGCCCCAGACATGGTCTTACACTGGCTC-TCTTAATGT
1 GCTGATG-CATGCCCCAGACAT-GTCTTACACTGGCTCGTCTCAA--T
** *
77702322 GGCTGATGCATGCCTTAGACATGTCTTACACTAGCTC
1 -GCTGATGCATGCCCCAGACATGTCTTACACTGGCTC
77702359 ACACAAATGA
Statistics
Matches: 71, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
45 5 0.07
46 23 0.32
47 27 0.38
48 16 0.23
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (44 bp):
GCTGATGCATGCCCCAGACATGTCTTACACTGGCTCGTCTCAAT
Found at i:77702441 original size:19 final size:19
Alignment explanation
Indices: 77702413--77702450 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
77702403 CCTAAGGTTT
*
77702413 AATCGGGAATTTTACTATC
1 AATCGAGAATTTTACTATC
77702432 AATCGAGAATTTTACTATC
1 AATCGAGAATTTTACTATC
77702451 TCTATTCTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (19 bp):
AATCGAGAATTTTACTATC
Found at i:77709867 original size:46 final size:44
Alignment explanation
Indices: 77709774--77709889 Score: 153
Period size: 46 Copynumber: 2.6 Consensus size: 44
77709764 GTGCTGATTC
*
77709774 CATGTCCCAGACATGGTCGTACACTAACACATCTCGTAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAACACATCTCGTAGCCGATG
* * *
77709819 CATGTCCCAGACATGTATTACACTGACTTACGTCTCG-AGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAAC--ACATCTCGTA-GCCGATG
77709865 CATGTCCCAGACATGTCTTACACTA
1 CATGTCCCAGACATGTCTTACACTA
77709890 GCACTCGTCC
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
44 10 0.16
45 15 0.24
46 37 0.60
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTAACACATCTCGTAGCCGATG
Found at i:77709908 original size:46 final size:46
Alignment explanation
Indices: 77709774--77709985 Score: 127
Period size: 46 Copynumber: 4.6 Consensus size: 46
77709764 GTGCTGATTC
* * **
77709774 CATGTCCCAGACATGGTCGTACACTAACACATCT-CGTA-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCACATCTCCCAATGCCGATG
* * * * *
77709819 CATGTCCCAGACATGTATTACACT-G-ACTTACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCACAT-C-TCCCAATGCCGATG
77709865 CATGTCCCAGACATGTCTTACACTAGCAC-TCGTCCCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCACATC-TCCCAATGCCGATG
* * * ** *
77709911 CCATG-CCTGAGACATAGTGTTACACT-G-GC-TCTCTTAATGTGGCTGATG
1 -CATGTCC-CAGACAT-GTCTTACACTAGCACATCTCCCAA--T-GCCGATG
*
77709959 CATGTCCCATACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
77709986 TCACACAAAT
Statistics
Matches: 132, Mismatches: 20, Indels: 27
0.74 0.11 0.15
Matches are distributed among these distances:
42 3 0.02
43 1 0.01
44 9 0.07
45 19 0.14
46 57 0.43
47 24 0.18
48 19 0.14
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCACATCTCCCAATGCCGATG
Found at i:77717367 original size:31 final size:31
Alignment explanation
Indices: 77717329--77717407 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
77717319 TTTAACGGTT
77717329 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
77717360 ACTGGGCCGAATCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
77717391 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
77717408 ACTGTAAACG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:77717478 original size:42 final size:42
Alignment explanation
Indices: 77717431--77717522 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
77717421 TGGCCCTTAG
* ** *
77717431 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGCATGTATGCAA
77717473 GCCCATTTCAATATCACATGAAATACCAATGCATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGCATGTATGCAA
77717515 GCCCATTT
1 GCCCATTT
77717523 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGCATGTATGCAA
Found at i:77717744 original size:26 final size:26
Alignment explanation
Indices: 77717667--77717867 Score: 282
Period size: 26 Copynumber: 7.8 Consensus size: 26
77717657 CCTCTTTAAT
*
77717667 AACTGGGGCA-AAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
77717692 AATTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* *
77717717 AACTAGGGCATAAGCCCTTTT-AGGTA
1 AACTGGGGCATAAGCCCTTTTCA-ATA
* *
77717743 AACTGGGGCATAAGCCATTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* *
77717769 AACTAGGGTATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
77717795 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
77717821 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
77717847 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
77717868 GCACTTCCTC
Statistics
Matches: 154, Mismatches: 19, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
25 32 0.21
26 122 0.79
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:77717922 original size:16 final size:16
Alignment explanation
Indices: 77717901--77717931 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77717891 ACCCAACCCA
*
77717901 ATGCAACATGTCATGT
1 ATGCAAAATGTCATGT
77717917 ATGCAAAATGTCATG
1 ATGCAAAATGTCATG
77717932 CCCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (16 bp):
ATGCAAAATGTCATGT
Found at i:77718755 original size:27 final size:27
Alignment explanation
Indices: 77718671--77718757 Score: 122
Period size: 27 Copynumber: 3.2 Consensus size: 27
77718661 TATTCGTCAT
* *
77718671 TTTACCATACAGGGG-TATTACAGTCAC
1 TTTACCCTACAGGGGCT-TTACAGTCTC
77718698 TTTACCCTACAGGGGCTTTACAGTCTC
1 TTTACCCTACAGGGGCTTTACAGTCTC
* *
77718725 TTTACCCTACAGGGGCTTTACAATCTT
1 TTTACCCTACAGGGGCTTTACAGTCTC
77718752 TTTACC
1 TTTACC
77718758 TAATAGGGGT
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 54 0.98
28 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.34
Consensus pattern (27 bp):
TTTACCCTACAGGGGCTTTACAGTCTC
Found at i:77718842 original size:27 final size:27
Alignment explanation
Indices: 77718789--77719147 Score: 256
Period size: 27 Copynumber: 13.3 Consensus size: 27
77718779 TTCATCCTAA
* * * * *
77718789 AAGGGTGTTTTGGTAAATCTACCAACC
1 AAGGGTATTTTGGTAATTTTACAAATC
** ** *
77718816 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTACAAATC
* *** *
77718843 AATGGTATTTCCATAATTTTTAGAAAGTC
1 AAGGGTATTTTGGTAA-TTTTACAAA-TC
* **
77718872 AAGGGTATTTCT-GTAACTTTGTAAATC
1 AAGGGTATTT-TGGTAATTTTACAAATC
* *
77718899 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTTTACAAATC
* *
77718926 AAGGGTATTTTGGTAATTTCACAAACC
1 AAGGGTATTTTGGTAATTTTACAAATC
*
77718953 AATGGTATTTTGGTAATTTTACAAA-C
1 AAGGGTATTTTGGTAATTTTACAAATC
* *
77718979 TAGGGGTATTTTGGTAATTTTACAAATT
1 -AAGGGTATTTTGGTAATTTTACAAATC
* * *
77719007 GAGGGTATTTTAGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAATC
* * *
77719034 AGGGGTATTTTAGCAATTTTACAAA-C
1 AAGGGTATTTTGGTAATTTTACAAATC
* ***
77719060 TAGGGTATTTTGGTAATTTTATTGATC
1 AAGGGTATTTTGGTAATTTTACAAATC
* * **
77719087 GAGGGTATTTGGGTAATTTTGTAAATC
1 AAGGGTATTTTGGTAATTTTACAAATC
*** * **
77719114 AAGGGTAAAATAGTAATTTTGTAAATC
1 AAGGGTATTTTGGTAATTTTACAAATC
77719141 AAGGGTA
1 AAGGGTA
77719148 AAACAGTAAT
Statistics
Matches: 265, Mismatches: 60, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
26 21 0.08
27 218 0.82
28 13 0.05
29 13 0.05
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAATC
Found at i:77718916 original size:56 final size:54
Alignment explanation
Indices: 77718815--77718935 Score: 134
Period size: 56 Copynumber: 2.2 Consensus size: 54
77718805 ATCTACCAAC
* * *
77718815 CAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCCATAATTTTTAGAAAGT
1 CAAGGGTATTTCAGTAACTTTGTAAACCAAGGGTATTTCCATAA-TTTTACAAA-T
* * * ***
77718871 CAAGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAACTTTGTAAACCAAGGGTATTTCCATAATTTTACAAAT
*
77718925 TAAGGGTATTT
1 CAAGGGTATTT
77718936 TGGTAATTTC
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 11 0.20
55 8 0.15
56 36 0.65
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (54 bp):
CAAGGGTATTTCAGTAACTTTGTAAACCAAGGGTATTTCCATAATTTTACAAAT
Found at i:77718993 original size:81 final size:81
Alignment explanation
Indices: 77718899--77719080 Score: 294
Period size: 81 Copynumber: 2.3 Consensus size: 81
77718889 TTTGTAAATC
* *
77718899 AGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTTGGTAATTTCACAAACCAATGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTTAGTAATTTCACAAACCAAGGGTATTTT
* *
77718964 GGTAATTTTACAAACT
66 AGCAATTTTACAAACT
* * *
77718980 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTTAGTAATTTCACAAACCAAGGGTATTTT
77719045 AGCAATTTTACAAACT
66 AGCAATTTTACAAACT
77719061 A-GGGTATTTTGGTAATTTTA
1 AGGGGTATTTTGGTAATTTTA
77719081 TTGATCGAGG
Statistics
Matches: 94, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
80 19 0.20
81 75 0.80
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTTAGTAATTTCACAAACCAAGGGTATTTT
AGCAATTTTACAAACT
Found at i:77719148 original size:27 final size:27
Alignment explanation
Indices: 77719099--77719220 Score: 163
Period size: 27 Copynumber: 4.5 Consensus size: 27
77719089 GGGTATTTGG
* *
77719099 GTAATTTTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCAAGGGTAAAACA
*
77719126 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACA
* *
77719153 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACA
* * *
77719180 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACA
*
77719207 GTAATTCTATAAAT
1 GTAATTCTGTAAAT
77719221 TGAGGGTACT
Statistics
Matches: 86, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 86 1.00
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCAAGGGTAAAACA
Found at i:77726586 original size:34 final size:33
Alignment explanation
Indices: 77726538--77726635 Score: 133
Period size: 34 Copynumber: 2.9 Consensus size: 33
77726528 GCGAATACAT
* *
77726538 TCTGGGCCTAAGCCCATATCAGTAACAGTAGCAG
1 TCTGGG-CTTAGCCCATTTCAGTAACAGTAGCAG
77726572 TCTGGGTCTTAGCCCATTTCAGTAACAGTAGCAG
1 TCTGGG-CTTAGCCCATTTCAGTAACAGTAGCAG
* *
77726606 TTTGGGCTTTAGCCCATTTCAGTAATAGTA
1 TCTGGGC-TTAGCCCATTTCAGTAACAGTA
77726636 ATCAGTGCAG
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
33 1 0.02
34 57 0.98
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (33 bp):
TCTGGGCTTAGCCCATTTCAGTAACAGTAGCAG
Found at i:77726648 original size:18 final size:18
Alignment explanation
Indices: 77726625--77726680 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
77726615 TAGCCCATTT
*
77726625 CAGTAATAGTAATCAGTG
1 CAGTAACAGTAATCAGTG
* *
77726643 CAGTAACCA-TGATCAATG
1 CAGTAA-CAGTAATCAGTG
*
77726661 CAGTAACAGTAACCAGTG
1 CAGTAACAGTAATCAGTG
77726679 CA
1 CA
77726681 ATACGGAAGC
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
17 2 0.07
18 27 0.90
19 1 0.03
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (18 bp):
CAGTAACAGTAATCAGTG
Found at i:77726990 original size:23 final size:23
Alignment explanation
Indices: 77726941--77726990 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
77726931 ACCCCATGCA
*
77726941 ATGCAACATAATATTATACATGG
1 ATGCAACATAACATTATACATGG
77726964 ATGCAACA-AACA-TATAGCATGG
1 ATGCAACATAACATTATA-CATGG
77726986 CATGC
1 -ATGC
77726991 TCAAATACAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 4 0.17
22 8 0.33
23 12 0.50
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (23 bp):
ATGCAACATAACATTATACATGG
Found at i:77727099 original size:27 final size:27
Alignment explanation
Indices: 77727026--77727143 Score: 130
Period size: 27 Copynumber: 4.4 Consensus size: 27
77727016 AACAAATCTA
* *
77727026 TCATTTTACCTTATCAGGGTATTACAG
1 TCATTTTACCCTATCAGGGTATTTCAG
*
77727053 TCATTTTACCCGA-CAGGGGTATTTCAG
1 TCATTTTACCCTATCA-GGGTATTTCAG
* * *
77727080 TCATTCTACCCTATGAGGGTATTTCGG
1 TCATTTTACCCTATCAGGGTATTTCAG
* * * *
77727107 TCAGTTTACCCTATGAGCGTATTTCGG
1 TCATTTTACCCTATCAGGGTATTTCAG
77727134 TCATTTTACC
1 TCATTTTACC
77727144 ACATAAGGGC
Statistics
Matches: 78, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 2 0.03
27 75 0.96
28 1 0.01
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.38
Consensus pattern (27 bp):
TCATTTTACCCTATCAGGGTATTTCAG
Found at i:77727163 original size:27 final size:27
Alignment explanation
Indices: 77727133--77727341 Score: 301
Period size: 27 Copynumber: 7.7 Consensus size: 27
77727123 GCGTATTTCG
* *
77727133 GTCATTTTACCACATAAGGGCAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
*
77727160 GTCATTTTATCACATAAGGGTAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
77727187 ATCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
77727214 GTTATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* * *
77727241 GTTATTTTATCACATGATGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
77727268 GTCATTTTATCACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
77727295 TTCATTTTATCACATAATGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
77727322 ATCATTTTATCGCATAAGGG
1 GTCATTTTATCACATAAGGG
77727342 TTCAGGTACG
Statistics
Matches: 165, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 165 1.00
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGCAAAATC
Found at i:77727764 original size:13 final size:12
Alignment explanation
Indices: 77727719--77727808 Score: 56
Period size: 12 Copynumber: 7.2 Consensus size: 12
77727709 ATAATTCCGG
*
77727719 TTAAATTTGTTC
1 TTAAATTTGCTC
*
77727731 TTAATAATT-CTC
1 TTAA-ATTTGCTC
77727743 GTTAAATTTGCTC
1 -TTAAATTTGCTC
* **
77727756 TTAATATTTCCGG
1 TTAA-ATTTGCTC
77727769 TTAAATTTGCTC
1 TTAAATTTGCTC
* **
77727781 TTAATATTTCCGG
1 TTAA-ATTTGCTC
*
77727794 TTAAATTTGCCC
1 TTAAATTTGCTC
77727806 TTA
1 TTA
77727809 TTATTTCTGA
Statistics
Matches: 58, Mismatches: 15, Indels: 10
0.70 0.18 0.12
Matches are distributed among these distances:
12 30 0.52
13 28 0.48
ACGTcount: A:0.26, C:0.16, G:0.10, T:0.49
Consensus pattern (12 bp):
TTAAATTTGCTC
Found at i:77727813 original size:25 final size:25
Alignment explanation
Indices: 77727694--77727815 Score: 167
Period size: 25 Copynumber: 4.9 Consensus size: 25
77727684 AGTTAAGCTT
* *
77727694 GTTAAA-TTGTTCTTAATAATTCCG
1 GTTAAATTTGCTCTTAATATTTCCG
* *
77727718 GTTAAATTTGTTCTTAATAATTCTC-
1 GTTAAATTTGCTCTTAATATTTC-CG
77727743 GTTAAATTTGCTCTTAATATTTCCG
1 GTTAAATTTGCTCTTAATATTTCCG
77727768 GTTAAATTTGCTCTTAATATTTCCG
1 GTTAAATTTGCTCTTAATATTTCCG
* *
77727793 GTTAAATTTGCCCTTATTATTTC
1 GTTAAATTTGCTCTTAATATTTC
77727816 TGAATAAGTT
Statistics
Matches: 91, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
24 7 0.08
25 83 0.91
26 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.11, T:0.49
Consensus pattern (25 bp):
GTTAAATTTGCTCTTAATATTTCCG
Found at i:77728719 original size:45 final size:45
Alignment explanation
Indices: 77728654--77728876 Score: 338
Period size: 45 Copynumber: 5.0 Consensus size: 45
77728644 TATCGTACAG
*
77728654 TACTATTCTGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
* *
77728699 CACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
* * * *
77728744 TACTAATCGGGCCCTTGAGCCTATCAGGCTATAATGCTGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
* * *
77728789 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATACCAGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
* *
77728834 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
77728877 ATTGATATGG
Statistics
Matches: 159, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 159 1.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
Found at i:77728809 original size:90 final size:89
Alignment explanation
Indices: 77728654--77728914 Score: 343
Period size: 90 Copynumber: 2.9 Consensus size: 89
77728644 TATCGTACAG
* * * * *
77728654 TACTATTCTGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATACACTATTTGGGCCTTTGAGC
1 TACTATTCGGGCCCTTGAGCCTAGCAGGCTATAATGCTGGTGATATACTA-TTGGGCCTTCGAGC
77728719 CTAGCAGGCTATAATGCCGGTGATA
65 CTAGCAGGCTATAATGCCGGTGATA
* *
77728744 TACTAATCGGGCCCTTGAGCCTATCAGGCTATAATGCTGGTGATATACTATTCGGGCCTTCGAGC
1 TACTATTCGGGCCCTTGAGCCTAGCAGGCTATAATGCTGGTGATATACTATT-GGGCCTTCGAGC
* *
77728809 CTAGCAGGCTATAATACCAGTGATA
65 CTAGCAGGCTATAATGCCGGTGATA
*
77728834 TACTATTCGGG-CCTTCGAGCCTAGCAGGCTATAATGCTGGTGA-AT--TGATATGGGGCTTCGA
1 TACTATTCGGGCCCTT-GAGCCTAGCAGGCTATAATGCTGGTGATATACT-AT-TGGGCCTTCGA
*
77728895 GCCTAGCAGGCGA-AATGCCG
63 GCCTAGCAGGCTATAATGCCG
77728915 TTGAATGAAT
Statistics
Matches: 152, Mismatches: 15, Indels: 11
0.85 0.08 0.06
Matches are distributed among these distances:
87 6 0.04
88 23 0.15
89 9 0.06
90 114 0.75
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (89 bp):
TACTATTCGGGCCCTTGAGCCTAGCAGGCTATAATGCTGGTGATATACTATTGGGCCTTCGAGCC
TAGCAGGCTATAATGCCGGTGATA
Found at i:77735415 original size:25 final size:25
Alignment explanation
Indices: 77735377--77735500 Score: 160
Period size: 25 Copynumber: 5.0 Consensus size: 25
77735367 AGTTAAGCTT
*
77735377 GTTAAA-TTGTTCTTAATAATTCCG
1 GTTAAATTTGCTCTTAATAATTCCG
* *
77735401 ATTAAATTTGTTCTTAATAATTCCG
1 GTTAAATTTGCTCTTAATAATTCCG
* *
77735426 GTTAAATTTGCTCTTAATATTTTCG
1 GTTAAATTTGCTCTTAATAATTCCG
*
77735451 GTTAAATTTGCTCTTAATATTTCCG
1 GTTAAATTTGCTCTTAATAATTCCG
* * *
77735476 GTTAAATTTGCCCTTATTATTTCCG
1 GTTAAATTTGCTCTTAATAATTCCG
77735501 AATAAGTTAC
Statistics
Matches: 91, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
24 5 0.05
25 86 0.95
ACGTcount: A:0.26, C:0.15, G:0.11, T:0.48
Consensus pattern (25 bp):
GTTAAATTTGCTCTTAATAATTCCG
Found at i:77735459 original size:12 final size:12
Alignment explanation
Indices: 77735424--77735486 Score: 54
Period size: 12 Copynumber: 5.1 Consensus size: 12
77735414 TTAATAATTC
77735424 CGGTTAAATTTG
1 CGGTTAAATTTG
** *
77735436 CTCTTAATATTTT
1 CGGTTAA-ATTTG
77735449 CGGTTAAATTTG
1 CGGTTAAATTTG
** *
77735461 CTCTTAATATTTC
1 CGGTTAA-ATTTG
77735474 CGGTTAAATTTG
1 CGGTTAAATTTG
77735486 C
1 C
77735487 CCTTATTATT
Statistics
Matches: 37, Mismatches: 12, Indels: 4
0.70 0.23 0.08
Matches are distributed among these distances:
12 19 0.51
13 18 0.49
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.48
Consensus pattern (12 bp):
CGGTTAAATTTG
Found at i:77737285 original size:37 final size:37
Alignment explanation
Indices: 77737226--77737297 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
77737216 AACTCAGATG
*
77737226 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
*
77737263 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGA
77737298 ATATATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
Found at i:77737499 original size:48 final size:48
Alignment explanation
Indices: 77737444--77737930 Score: 893
Period size: 48 Copynumber: 10.1 Consensus size: 48
77737434 ACACATCGCC
*
77737444 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
77737492 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
77737542 TATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
77737590 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
77737638 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACGTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
77737686 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
77737734 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
77737782 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
**
77737830 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
77737878 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
77737926 TACAT
1 TACAT
77737931 CAATTTCCGC
Statistics
Matches: 425, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
48 379 0.89
50 46 0.11
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:77740572 original size:45 final size:45
Alignment explanation
Indices: 77740504--77740677 Score: 234
Period size: 45 Copynumber: 3.9 Consensus size: 45
77740494 GGGGTGTCAC
*
77740504 ATATACTAATCGGGCCCTT-GAGCCTAGCAGGCTATAATGCCGGTG
1 ATATACTATTCGGG-CCTTCGAGCCTAGCAGGCTATAATGCCGGTG
77740549 ATATACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTG
1 ATATACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTG
* *
77740594 ATATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTG
1 ATATACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTG
* *
77740639 A-AT--TGATATCGGG-CTTCAAGCCTAGCAGGCGA-AATGCCG
1 ATATACT-AT-TCGGGCCTTCGAGCCTAGCAGGCTATAATGCCG
77740678 TTGAATGAAT
Statistics
Matches: 119, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
42 7 0.06
43 18 0.15
44 11 0.09
45 83 0.70
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (45 bp):
ATATACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTG
Found at i:77744496 original size:41 final size:41
Alignment explanation
Indices: 77744381--77744496 Score: 137
Period size: 43 Copynumber: 2.8 Consensus size: 41
77744371 CATACCAACA
*
77744381 CCATATCCCAGATATGGTCTT-CTATGTAATCTCATATCGATG
1 CCATAT-CCAGATATGGTCTTAC-ATGTAGTCTCATATCGATG
* * *
77744423 CCAATAGACCA-ACTATGGCCTTACATGAAGTCTCATATCGATG
1 CC-ATA-TCCAGA-TATGGTCTTACATGTAGTCTCATATCGATG
77744466 CCATATCCAGATATGGTCTTACATGTAGTCT
1 CCATATCCAGATATGGTCTTACATGTAGTCT
77744497 TAGTAACCCT
Statistics
Matches: 62, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
41 21 0.34
42 7 0.11
43 33 0.53
44 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (41 bp):
CCATATCCAGATATGGTCTTACATGTAGTCTCATATCGATG
Found at i:77748227 original size:40 final size:39
Alignment explanation
Indices: 77748062--77748245 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
77748052 AAATTGAATG
* * *
77748062 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
77748102 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
77748142 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
77748182 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
77748221 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
77748246 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:77748270 original size:80 final size:81
Alignment explanation
Indices: 77748102--77748290 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
77748092 GCTGGAAATT
* * * *
77748102 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
77748167 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
77748183 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
77748246 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
77748262 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
77748291 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:77766372 original size:8 final size:8
Alignment explanation
Indices: 77766354--77766418 Score: 62
Period size: 8 Copynumber: 7.9 Consensus size: 8
77766344 CTTTGTTCTA
77766354 AAAAAAGAG
1 AAAAAA-AG
77766363 AAAAAAAG
1 AAAAAAAG
77766371 AAAAAAAG
1 AAAAAAAG
*
77766379 --AAAAGG
1 AAAAAAAG
77766385 AAAAAAAG
1 AAAAAAAG
*
77766393 AAAACAACAT
1 AAAA-AA-AG
77766403 AAAAAAGAG
1 AAAAAA-AG
77766412 AAAAAAA
1 AAAAAAA
77766419 ATTGATTAAG
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
6 5 0.11
8 20 0.43
9 17 0.36
10 5 0.11
ACGTcount: A:0.82, C:0.03, G:0.14, T:0.02
Consensus pattern (8 bp):
AAAAAAAG
Found at i:77766387 original size:14 final size:14
Alignment explanation
Indices: 77766365--77766396 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
77766355 AAAAAGAGAA
77766365 AAAAAGAAAAAAAG
1 AAAAAGAAAAAAAG
*
77766379 AAAAGGAAAAAAAG
1 AAAAAGAAAAAAAG
77766393 AAAA
1 AAAA
77766397 CAACATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAAAAAG
Found at i:77773486 original size:20 final size:21
Alignment explanation
Indices: 77773447--77773487 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
77773437 ACTTGTATAA
*
77773447 CTATCATCAAACATTCAAAAT
1 CTATCATCAAACAATCAAAAT
*
77773468 CTATCATTAAA-AATCAAAAT
1 CTATCATCAAACAATCAAAAT
77773488 ACTCATGTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.51, C:0.20, G:0.00, T:0.29
Consensus pattern (21 bp):
CTATCATCAAACAATCAAAAT
Found at i:77784727 original size:95 final size:95
Alignment explanation
Indices: 77784553--77784737 Score: 253
Period size: 95 Copynumber: 1.9 Consensus size: 95
77784543 TAATGCTCCG
* *
77784553 TAACCCTAGTTCGGTGTTGAATACGGGTGAGGGGTGTTACATTTATTGGTATTAGACCTACAGTT
1 TAACCCTAGTTCGGTGTTGAATACAGGTGAGGGGTGTTACATTTATTGGTATGAGACCTACAGTT
** *
77784618 TAGTCAATTTTAGGACTAAAGTAGCCCTCT
66 TAGTCAATCCTAGGACCAAAGTAGCCCTCT
* * * * **
77784648 TAACCCTTGTTGGGTGTTGAGTACAGGTGAGGGGTGTTACATTTATTGGTATGAGAGCTATGGTT
1 TAACCCTAGTTCGGTGTTGAATACAGGTGAGGGGTGTTACATTTATTGGTATGAGACCTACAGTT
* *
77784713 TAGTTAATCCTAGGACCAATGTAGC
66 TAGTCAATCCTAGGACCAAAGTAGC
77784738 TTGTGTGGGA
Statistics
Matches: 77, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
95 77 1.00
ACGTcount: A:0.24, C:0.14, G:0.27, T:0.35
Consensus pattern (95 bp):
TAACCCTAGTTCGGTGTTGAATACAGGTGAGGGGTGTTACATTTATTGGTATGAGACCTACAGTT
TAGTCAATCCTAGGACCAAAGTAGCCCTCT
Found at i:77789630 original size:21 final size:21
Alignment explanation
Indices: 77789588--77789639 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
77789578 TACTTTAGCC
* *
77789588 ATTTAATTTTCTTGCAATTTA
1 ATTTAATTTTATTACAATTTA
77789609 ATTTAATTTTATTACTAA-TTA
1 ATTTAATTTTATTAC-AATTTA
*
77789630 ATTTACTTTT
1 ATTTAATTTT
77789640 TCTTTCTCTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 25 0.93
22 2 0.07
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.60
Consensus pattern (21 bp):
ATTTAATTTTATTACAATTTA
Found at i:77794006 original size:68 final size:70
Alignment explanation
Indices: 77793934--77794131 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
77793924 ACACCCTGTA
* * * *
77793934 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
77793996 ATAAAT
65 ATAAAT
*
77794002 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
77794067 ATAAAT
65 ATAAAT
*
77794073 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
77794132 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:77794045 original size:41 final size:41
Alignment explanation
Indices: 77794000--77794117 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
77793990 TGAAAGATAA
77794000 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
77794041 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
77794071 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
77794112 ATGTAG
1 ATGTAG
77794118 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:77794057 original size:71 final size:71
Alignment explanation
Indices: 77793968--77794131 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
77793958 GAGATGTATC
77793968 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
77794033 AGGACA
66 AGGACA
77794039 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
77794104 AGGACA
66 AGGACA
77794110 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
77794132 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:77801571 original size:68 final size:70
Alignment explanation
Indices: 77801499--77801696 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
77801489 ACACCCTGTA
* * * *
77801499 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
77801561 ATAAAT
65 ATAAAT
*
77801567 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
77801632 ATAAAT
65 ATAAAT
*
77801638 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
77801697 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:77801610 original size:41 final size:41
Alignment explanation
Indices: 77801565--77801682 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
77801555 TGAAAGATAA
77801565 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
77801606 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
77801636 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
77801677 ATGTAG
1 ATGTAG
77801683 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:77801622 original size:71 final size:71
Alignment explanation
Indices: 77801533--77801696 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
77801523 GAGATGTATC
77801533 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
77801598 AGGACA
66 AGGACA
77801604 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
77801669 AGGACA
66 AGGACA
77801675 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
77801697 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:77811541 original size:46 final size:46
Alignment explanation
Indices: 77811366--77811541 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
77811356 TGTAACCCAC
* * *
77811366 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
77811412 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** * *
77811458 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
77811505 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
77811542 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 67 0.63
47 30 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:77822854 original size:27 final size:27
Alignment explanation
Indices: 77822823--77822924 Score: 145
Period size: 27 Copynumber: 3.8 Consensus size: 27
77822813 GAAAATCAGT
77822823 CATTTTACCCTATAGGGGTATTACAGA
1 CATTTTACCCTATAGGGGTATTACAGA
*
77822850 CATTTT-CCCTACAGGGGTATTACAGA
1 CATTTTACCCTATAGGGGTATTACAGA
* *
77822876 CATTTTACCCTAT-GGGGTTATTTCAGT
1 CATTTTACCCTATAGGGG-TATTACAGA
*
77822903 TATTTTACCCTATAGGGGTATT
1 CATTTTACCCTATAGGGGTATT
77822925 TCGGTCATCA
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
26 29 0.43
27 34 0.51
28 4 0.06
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (27 bp):
CATTTTACCCTATAGGGGTATTACAGA
Found at i:77822886 original size:53 final size:54
Alignment explanation
Indices: 77822823--77822924 Score: 145
Period size: 53 Copynumber: 1.9 Consensus size: 54
77822813 GAAAATCAGT
77822823 CATTTTACCCTATAGGGG-TATTACAGACATTTT-CCCTACAGGGGTATTACAGA
1 CATTTTACCCTAT-GGGGTTATTACAGACATTTTACCCTACAGGGGTATTACAGA
* ** *
77822876 CATTTTACCCTATGGGGTTATTTCAGTTATTTTACCCTATAGGGGTATT
1 CATTTTACCCTATGGGGTTATTACAGACATTTTACCCTACAGGGGTATT
77822925 TCGGTCATCA
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
52 4 0.09
53 25 0.58
54 14 0.33
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (54 bp):
CATTTTACCCTATGGGGTTATTACAGACATTTTACCCTACAGGGGTATTACAGA
Found at i:77823183 original size:26 final size:26
Alignment explanation
Indices: 77823147--77823317 Score: 182
Period size: 27 Copynumber: 6.4 Consensus size: 26
77823137 AGCCCGCAAC
*
77823147 GGTAAAATGACCAAAATACCCTCA-AG
1 GGTAAAATGACCGAAATACCC-CATAG
* *
77823173 GGTAAAATGACTGAAATACACCATAG
1 GGTAAAATGACCGAAATACCCCATAG
*
77823199 GGTAAAATGAGCGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCC-ATAG
77823226 GGTAAAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATA-CCCCATAG
* * *
77823253 GGTAAAATGACTGTAATACCCCTGTAG
1 GGTAAAATGACCGAAATACCCC-ATAG
** * * *
77823280 GGTAAAATGATGGTAATACCCCTCTAA
1 GGTAAAATGACCGAAATACCCC-ATAG
77823307 GGTAAAATGAC
1 GGTAAAATGAC
77823318 TGATTTTCTC
Statistics
Matches: 126, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
25 2 0.02
26 43 0.34
27 77 0.61
28 4 0.03
ACGTcount: A:0.41, C:0.19, G:0.20, T:0.20
Consensus pattern (26 bp):
GGTAAAATGACCGAAATACCCCATAG
Found at i:77823756 original size:18 final size:18
Alignment explanation
Indices: 77823713--77823758 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
77823703 TACTGTTTAA
*
77823713 ACTATTACTGCATTATTT
1 ACTATTACTGCACTATTT
* *
77823731 ACTGTTACTGCACTGTTT
1 ACTATTACTGCACTATTT
*
77823749 ATTATTACTG
1 ACTATTACTG
77823759 TAATGGGCCA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.24, C:0.17, G:0.11, T:0.48
Consensus pattern (18 bp):
ACTATTACTGCACTATTT
Found at i:77825965 original size:41 final size:41
Alignment explanation
Indices: 77825908--77826024 Score: 171
Period size: 41 Copynumber: 2.9 Consensus size: 41
77825898 CCACCAGTGG
* * *
77825908 ATCCACGGTCGTCAAGCATCCATGCTATCCTTAATCGGTGC
1 ATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCGGTGC
* *
77825949 ATCCACGGTCGTCAAGCAACCATGCGATTCTCAATCGGTGG
1 ATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCGGTGC
* *
77825990 ATCCAAGGTCGTCAAGCAACTATGCGATCCTCAAT
1 ATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
77826025 TTCTTCCTCC
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 68 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.24
Consensus pattern (41 bp):
ATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCGGTGC
Found at i:77826315 original size:27 final size:27
Alignment explanation
Indices: 77826285--77826632 Score: 205
Period size: 27 Copynumber: 12.9 Consensus size: 27
77826275 GTAAATCTAC
77826285 AAACTAAGGGTATTTCGGTAATTTTGT
1 AAACTAAGGGTATTTCGGTAATTTTGT
* * *
77826312 AAACAAATGGTATTTCTGTAATTTT-T
1 AAACTAAGGGTATTTCGGTAATTTTGT
* *
77826338 GAAAGTCAAGGGTATTTCTGTAATTTTGT
1 -AAACT-AAGGGTATTTCGGTAATTTTGT
* * * * **
77826367 AAATTAGGGGTATTTCTGTAACTTTCC
1 AAACTAAGGGTATTTCGGTAATTTTGT
**
77826394 AAA-TCAAGGGTATTTCGGTAATTTTCC
1 AAACT-AAGGGTATTTCGGTAATTTTGT
* **
77826421 AAA-TCAGGGTACTTT-GGTAATTTTAC
1 AAACTAAGGGTA-TTTCGGTAATTTTGT
* * * *
77826447 AAATCGAA-GGCATTTTGATAA-TTT-T
1 AAA-CTAAGGGTATTTCGGTAATTTTGT
* *
77826472 ACAAGTCGAGGGTATTTCGGTAA-TTT-T
1 A-AACT-AAGGGTATTTCGGTAATTTTGT
* * * **
77826499 ACAAGTCGAGGTTATTTCGGTAATTTTAC
1 A-AACT-AAGGGTATTTCGGTAATTTTGT
* *
77826528 AAACTAGGGGTATTTTGGTAATTTTGCT
1 AAACTAAGGGTATTTCGGTAATTTTG-T
* *
77826556 AATC-AAGGGTATTTTGGTAATTTTGT
1 AAACTAAGGGTATTTCGGTAATTTTGT
* *
77826582 AAACCAAGGGTA-TTCAGTAATTTTGT
1 AAACTAAGGGTATTTCGGTAATTTTGT
* **
77826608 AAACCAAGGGTATTTTAGTAATTTT
1 AAACTAAGGGTATTTCGGTAATTTT
77826633 ACCCTACAAG
Statistics
Matches: 263, Mismatches: 42, Indels: 32
0.78 0.12 0.09
Matches are distributed among these distances:
25 1 0.00
26 58 0.22
27 169 0.64
28 33 0.13
29 2 0.01
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
AAACTAAGGGTATTTCGGTAATTTTGT
Found at i:77826496 original size:54 final size:52
Alignment explanation
Indices: 77826264--77826634 Score: 232
Period size: 54 Copynumber: 6.9 Consensus size: 52
77826254 TCACCCTACA
* * * * ** *
77826264 AGGGTGTTTTGGTAAATCTACAAA-CTAAGGGTATTTCGGTAATTTTGTAAAC
1 AGGGTATTTCGGTAATTTTACAAATC-AAGGGTATTTCGGTAATTTTACAATC
* * ** * *
77826316 AAATGGTATTTCTGTAATTTTTGAAAGTCAAGGGTATTTCTGTAATTTTGTA-AATT
1 --AGGGTATTTCGGTAATTTTACAAA-TCAAGGGTATTTCGGTAA-TTT-TACAATC
* * * *
77826372 AGGGGTATTTCTGTAACTTTCCAAATCAAGGGTATTTCGGTAATTTTCCAAATC
1 A-GGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTAC-AATC
* * *
77826426 AGGGTACTTT-GGTAATTTTACAAATCGAA-GGCATTTTGATAATTTTACAAGTC
1 AGGGTA-TTTCGGTAATTTTACAAATC-AAGGGTATTTCGGTAATTTTACAA-TC
* * * *
77826479 GAGGGTATTTCGGTAATTTTACAAGTCGAGGTTATTTCGGTAATTTTACAAAC
1 -AGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAATC
* * * * *
77826532 TAGGGGTATTTTGGTAATTTTGCTAATCAAGGGTATTTTGGTAATTTTGTA-AACC
1 -A-GGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCGGTAA-TTT-TACAATC
* ** * **
77826587 AAGGGTA-TTCAGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTAC
1 -AGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTAC
77826635 CCTACAAGGG
Statistics
Matches: 251, Mismatches: 49, Indels: 36
0.75 0.15 0.11
Matches are distributed among these distances:
51 2 0.01
52 6 0.02
53 73 0.29
54 120 0.48
55 41 0.16
56 8 0.03
57 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (52 bp):
AGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAATC
Found at i:77826618 original size:134 final size:131
Alignment explanation
Indices: 77826290--77826634 Score: 320
Period size: 134 Copynumber: 2.6 Consensus size: 131
77826280 TCTACAAACT
*
77826290 AAGGGTATTTCGGTAATTTTGTAAACAAATGGTATTTCTGTAATTTTTGAAAGTCAAGGGTATTT
1 AAGGGTATTTTGGTAATTTTGTAAACAAA-GGTA-TTCTGTAATTTTT-AAA-TCAAGGGTATTT
* * * *
77826355 CTGTAATTTTGTA-AATTAGGGGTATTTCTGTAACTTTCCAAATCAAGGGTATTTCGGTAATTTT
62 CAGTAA-TTT-TACAAGTAGGGGTATTTCGGTAACTTTACAAATCAAGGGTATTTCGGTAATTTT
77826419 CCAAATC
125 CCAAATC
* ** * * * *
77826426 -AGGGTACTTTGGTAATTTTACAAATCGAAGGCATTTTGATAA-TTTTACAAGTCGAGGGTATTT
1 AAGGGTATTTTGGTAATTTTGTAAA-CAAAGGTATTCTG-TAATTTTTA-AA-TCAAGGGTATTT
* * * * * *
77826489 CGGTAATTTTACAAGTCGAGGTTATTTCGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTT
62 CAGTAATTTTACAAGTAG-GGGTATTTCGGTAACTTTACAAATC-AAGGGTATTTCGGTAATTTT
* *
77826553 GCTAATC
125 CCAAATC
* * * *
77826560 AAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTCAGTAATTTTGTAAACCAAGGGTATTTTA
1 AAGGGTATTTTGGTAATTTTGTAAA-CAAAGGTATTCTGTAATTTT-TAAATCAAGGGTATTTCA
77826625 GTAATTTTAC
64 GTAATTTTAC
77826635 CCTACAAGGG
Statistics
Matches: 168, Mismatches: 32, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
132 2 0.01
133 9 0.05
134 92 0.55
135 60 0.36
136 5 0.03
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (131 bp):
AAGGGTATTTTGGTAATTTTGTAAACAAAGGTATTCTGTAATTTTTAAATCAAGGGTATTTCAGT
AATTTTACAAGTAGGGGTATTTCGGTAACTTTACAAATCAAGGGTATTTCGGTAATTTTCCAAAT
C
Found at i:77826642 original size:27 final size:27
Alignment explanation
Indices: 77826612--77826683 Score: 99
Period size: 27 Copynumber: 2.7 Consensus size: 27
77826602 TTTTGTAAAC
* *
77826612 CAAGGGTATTTTAGTAATTTTACCCTA
1 CAAGGGTATTTCAGTAATTCTACCCTA
* * *
77826639 CAAGGGCATTTCAGTAATTCTATCCTG
1 CAAGGGTATTTCAGTAATTCTACCCTA
77826666 CAAGGGTATTTCAGTAAT
1 CAAGGGTATTTCAGTAAT
77826684 ACTAGCTATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTCTACCCTA
Found at i:77834704 original size:16 final size:15
Alignment explanation
Indices: 77834678--77834711 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
77834668 AAAATTAATA
77834678 TATAAGTATATTTAT
1 TATAAGTATATTTAT
*
77834693 TATAATGTATATTTTT
1 TATAA-GTATATTTAT
77834709 TAT
1 TAT
77834712 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (15 bp):
TATAAGTATATTTAT
Found at i:77839665 original size:50 final size:50
Alignment explanation
Indices: 77839590--77839714 Score: 189
Period size: 50 Copynumber: 2.5 Consensus size: 50
77839580 TATGGCAACT
* * *
77839590 AGTGATAAGTAACAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA-A
1 AGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAATGACA
77839640 AGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAATGACA
1 AGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAATGACA
* *
77839690 AGTGAAAAGTGGTAGCTTCGGCTAC
1 AGTGATAAGTGATAGCTTCGGCTAC
77839715 CTGATCAGTG
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
49 5 0.07
50 64 0.93
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (50 bp):
AGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAATGACA
Found at i:77839728 original size:31 final size:31
Alignment explanation
Indices: 77839690--77839838 Score: 255
Period size: 31 Copynumber: 4.8 Consensus size: 31
77839680 GAAAATGACA
77839690 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
77839721 AGTGAAAAGTGGTAACTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
77839752 AGTGAAAAGTGGTAGC-TCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
*
77839783 AGTGAAAAATGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
77839814 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
77839839 AAGTGACAAG
Statistics
Matches: 111, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
30 2 0.02
31 107 0.96
32 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:77839961 original size:49 final size:49
Alignment explanation
Indices: 77839857--77839997 Score: 162
Period size: 49 Copynumber: 2.9 Consensus size: 49
77839847 AGTGATTTCC
** * *
77839857 GTATAAGACCATATCTACGATATGGCATCG--GTGTGATATATGCTACT
1 GTATAAGACCATATCTGGGATATGGCATCGATATGTGATATGTGCTACT
*
77839904 GTATAAGACCATATCTGGGATATGGCATCGATATGTGATATGTGATTAC-
1 GTATAAGACCATATCTGGGATATGGCATCGATATGTGATATGTG-CTACT
* * * *
77839953 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAATATGTG
1 GTATAAGACCATATCTGGGATATGGCATCGATATGTG-ATATGTG
77839998 TAAGACCATA
Statistics
Matches: 81, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
47 28 0.35
49 43 0.53
50 10 0.12
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (49 bp):
GTATAAGACCATATCTGGGATATGGCATCGATATGTGATATGTGCTACT
Found at i:77839999 original size:42 final size:43
Alignment explanation
Indices: 77839953--77840067 Score: 164
Period size: 42 Copynumber: 2.7 Consensus size: 43
77839943 ATGTGATTAC
*
77839953 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
77839995 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
**
77840037 GTGTAAGACCATAG-TCGAACTATGGCATCGA
1 GTGTAAGACCATAGCT-GGGCTATGGCATCGA
77840068 GAAAATGAAG
Statistics
Matches: 66, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
41 2 0.03
42 63 0.95
43 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:77844567 original size:48 final size:48
Alignment explanation
Indices: 77844511--77844715 Score: 251
Period size: 48 Copynumber: 4.4 Consensus size: 48
77844501 CATTCCGGAT
77844511 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
* ** ** *
77844559 ATGTTCTTACATGGGATCGTAGGTCGATGCCAATGCCATGTACCAGAC
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
*
77844607 ATGGTCTTACATGGGATCACATATCGATGCCGAT---A-G-CCCAG-C
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
** * * *
77844649 TATGGTCTTACATGAAATTATATATTGATGCCAATGCCATGTCCCAGAC
1 -ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
77844698 ATGGTCTTACATGGGATC
1 ATGGTCTTACATGGGATC
77844716 GCACATAACC
Statistics
Matches: 128, Mismatches: 22, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
42 1 0.01
43 32 0.25
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 90 0.70
49 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (48 bp):
ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
Found at i:77844696 original size:91 final size:94
Alignment explanation
Indices: 77844511--77844715 Score: 265
Period size: 91 Copynumber: 2.2 Consensus size: 94
77844501 CATTCCGGAT
* **
77844511 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGTTCTTACATGGGAT
1 ATGGTCTTACATGGGATCACATATCGATGCCAAT--CATGTCCCAGACATGGTCTTACATGAAAT
* *
77844576 CGTAGGTCGATGCCAATGCCATGTACCAGAC
64 CATAGATCGATGCCAATGCCATGTACCAGAC
* *
77844607 ATGGTCTTACATGGGATCACATATCGATGCCGAT-A-G-CCCAG-CTATGGTCTTACATGAAATT
1 ATGGTCTTACATGGGATCACATATCGATGCCAATCATGTCCCAGAC-ATGGTCTTACATGAAATC
* * *
77844668 ATATATTGATGCCAATGCCATGTCCCAGAC
65 ATAGATCGATGCCAATGCCATGTACCAGAC
77844698 ATGGTCTTACATGGGATC
1 ATGGTCTTACATGGGATC
77844716 GCACATAACC
Statistics
Matches: 98, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
90 1 0.01
91 62 0.63
92 1 0.01
93 1 0.01
96 33 0.34
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (94 bp):
ATGGTCTTACATGGGATCACATATCGATGCCAATCATGTCCCAGACATGGTCTTACATGAAATCA
TAGATCGATGCCAATGCCATGTACCAGAC
Found at i:77848785 original size:43 final size:43
Alignment explanation
Indices: 77848720--77848802 Score: 123
Period size: 43 Copynumber: 1.9 Consensus size: 43
77848710 ACATGAATCA
* *
77848720 CATCCATTATAAACTCGAACCTCTCAACGTGCTTGGATGCTCG
1 CATCCATAATAAACTCGAACCTCTCAACGAGCTTGGATGCTCG
*
77848763 CATCCATAATGAACTC-AGACCTCTCAACGAGCTTGGATGC
1 CATCCATAATAAACTCGA-ACCTCTCAACGAGCTTGGATGC
77848803 CACATATTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 1 0.03
43 35 0.97
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (43 bp):
CATCCATAATAAACTCGAACCTCTCAACGAGCTTGGATGCTCG
Found at i:77854542 original size:43 final size:46
Alignment explanation
Indices: 77854452--77854564 Score: 130
Period size: 43 Copynumber: 2.6 Consensus size: 46
77854442 TGATTACATG
*
77854452 TAAGACCATATCTGGGACATTGG---CATTATAGTGTAATTACGTG
1 TAAGACCATATCTGGGACATTGGCATCATTATAGTGTAATTACGTA
*
77854495 TAAGACCATGTCTGGGACATTGGCATCATTATA-TG-AATT-CGTA
1 TAAGACCATATCTGGGACATTGGCATCATTATAGTGTAATTACGTA
* * * *
77854538 TAAGACCCTTTCTGAGACAGTGGCATC
1 TAAGACCATATCTGGGACATTGGCATC
77854565 GATATGTGAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
43 48 0.79
44 4 0.07
45 2 0.03
46 7 0.11
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (46 bp):
TAAGACCATATCTGGGACATTGGCATCATTATAGTGTAATTACGTA
Found at i:77860032 original size:33 final size:34
Alignment explanation
Indices: 77859987--77860082 Score: 144
Period size: 33 Copynumber: 2.9 Consensus size: 34
77859977 TATAACAGAC
77859987 GCACGC-AA-ATATATTATACATATAACACCCAT
1 GCACGCAAATATATATTATACATATAACACCCAT
*
77860019 GCAC-CAAATATATATTATACATATAACATCCAT
1 GCACGCAAATATATATTATACATATAACACCCAT
* *
77860052 GCACGTAAATATATATTATATATATAACACC
1 GCACGCAAATATATATTATACATATAACACC
77860083 AAAACCCATG
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
31 1 0.02
32 6 0.11
33 27 0.47
34 23 0.40
ACGTcount: A:0.45, C:0.21, G:0.05, T:0.29
Consensus pattern (34 bp):
GCACGCAAATATATATTATACATATAACACCCAT
Found at i:77861126 original size:28 final size:28
Alignment explanation
Indices: 77861073--77861127 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
77861063 CTAATGCCCC
*
77861073 AATTATTAATACCATTATTATTTAATTT
1 AATTATTAATACCATTATTATCTAATTT
* *
77861101 AATTATTATTACTATTATTCA-CTAATT
1 AATTATTAATACCATTATT-ATCTAATT
77861128 ATTTATTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 22 0.96
29 1 0.04
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (28 bp):
AATTATTAATACCATTATTATCTAATTT
Found at i:77864867 original size:16 final size:17
Alignment explanation
Indices: 77864836--77864868 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
77864826 AGTTAATACA
*
77864836 AAGCAACACTCAAAAAG
1 AAGCAAAACTCAAAAAG
77864853 AAGCAAAAC-CAAAAAG
1 AAGCAAAACTCAAAAAG
77864869 GGGAAAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.64, C:0.21, G:0.12, T:0.03
Consensus pattern (17 bp):
AAGCAAAACTCAAAAAG
Found at i:77875661 original size:26 final size:26
Alignment explanation
Indices: 77875615--77875666 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
77875605 GTCAACCTTA
77875615 ACTCTAGGCGTAAATTAGT-AATTTT
1 ACTCTAGGCGTAAATTAGTAAATTTT
*
77875640 ACTCTTAGGGGTAAATCT-GTAAATTTT
1 ACTC-TAGGCGTAAAT-TAGTAAATTTT
77875667 CCACCTATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 4 0.17
26 12 0.52
27 7 0.30
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.40
Consensus pattern (26 bp):
ACTCTAGGCGTAAATTAGTAAATTTT
Found at i:77879922 original size:47 final size:46
Alignment explanation
Indices: 77879859--77880075 Score: 206
Period size: 46 Copynumber: 4.6 Consensus size: 46
77879849 TGTGTGGGCT
* *
77879859 AGTGTAAGACATGTCTGGGACATGCATCTGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGA-GATGAGAGCC
* * * * * * * *
77879905 AGAGTAAAACCATGTCTGGGACATGGCA-CCGACATTGATACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CGAGATGAGAGCC
* *
77879953 AGTGTAGGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATG-AGAGCC
* * * *
77879999 ACTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGAGAGCC
77880045 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
77880076 ACTTGAGATA
Statistics
Matches: 139, Mismatches: 23, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
45 1 0.01
46 64 0.46
47 50 0.36
48 23 0.17
49 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGAGAGCC
Found at i:77880084 original size:93 final size:94
Alignment explanation
Indices: 77879953--77880124 Score: 217
Period size: 93 Copynumber: 1.8 Consensus size: 94
77879943 TACGAGAGCT
* * * *
77879953 AGTGTAGGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGC-CACTGTAAGA-CATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGACTCGAGATATAAGCTCA-TGTAAGACCATGTCTA
77880016 GGACAT-GCATCGGCTACGAGATGATAGTC
65 GGACATGGCATCGGCTACGAGATGATAGTC
* * * *
77880045 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGATATGAGCTTATGTAAGACCGTGTCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGACTCGAGATATAAGCTCATGTAAGACCATGTCT
77880109 AGGACATGGCATCGGC
64 AGGACATGGCATCGGC
77880125 ATCTTACCCA
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
92 8 0.12
93 33 0.49
94 18 0.27
95 8 0.12
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGACTCGAGATATAAGCTCATGTAAGACCATGTCTAG
GACATGGCATCGGCTACGAGATGATAGTC
Found at i:77880098 original size:47 final size:47
Alignment explanation
Indices: 77879859--77880122 Score: 183
Period size: 47 Copynumber: 5.7 Consensus size: 47
77879849 TGTGTGGGCT
*
77879859 AGTGTAAGA-CATGTCTGGGACAT-GCATCTG-C-C-ACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGAGA-TAT--GAGCC
* * * * * * *
77879905 AGAGTAAAACCATGTCTGGGACATGGCACCGACATTGATACGA-GAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TCGAGA-TATGAGCC
* * * *
77879953 AGTGTAGGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGAGATATGAGCC
* * *
77879999 ACTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACT-CGAGAT-ATGAGCC
* *
77880045 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATGAGCTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGATATGAGC-C
* *
77880093 A-TGTAAGACCGTGTCTAGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
77880123 GCATCTTACC
Statistics
Matches: 173, Mismatches: 31, Indels: 27
0.75 0.13 0.12
Matches are distributed among these distances:
45 3 0.02
46 63 0.36
47 80 0.46
48 24 0.14
51 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGATATGAGCC
Found at i:77880114 original size:140 final size:141
Alignment explanation
Indices: 77879861--77880124 Score: 340
Period size: 140 Copynumber: 1.9 Consensus size: 141
77879851 TGTGGGCTAG
* *
77879861 TGTAAGACATGTCTGGGACATGCATCTGCCACATTATGAGAGCCAGAGTAAAACCATGTCTGGGA
1 TGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGAGTAAAACCATGTCTGGGA
* * *
77879926 CATGGCACCGACATTGATACGAGAGCTAGTGTAGGACATGTCTGGGACAT-GCATCGGCCTCGAG
66 CATGGCACCGACATTGAGACGAGAGCTAGTGTAAGACATGTCTAGGACATGGCATCGGCCTCGAG
77879990 ATGTAAGCCAC
131 ATGTAAGCCAC
* * * * *
77880001 TGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACCATGTCTGGG
1 TGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGAGAGCCAGAGTAAAACCATGTCTGGG
* * *
77880065 ACATGGCATCGAC-TTGAGA-TATGAGCTTA-TGTAAGACCGTGTCTAGGACATGGCATCGGC
65 ACATGGCACCGACATTGAGACGA-GAGC-TAGTGTAAGA-CATGTCTAGGACATGGCATCGGC
77880125 ATCTTACCCA
Statistics
Matches: 106, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
138 1 0.01
139 15 0.14
140 81 0.76
141 9 0.08
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (141 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGAGTAAAACCATGTCTGGGA
CATGGCACCGACATTGAGACGAGAGCTAGTGTAAGACATGTCTAGGACATGGCATCGGCCTCGAG
ATGTAAGCCAC
Found at i:77885356 original size:67 final size:67
Alignment explanation
Indices: 77885248--77885390 Score: 277
Period size: 67 Copynumber: 2.1 Consensus size: 67
77885238 GCTAGAGAAA
77885248 CCTATCTCCGTATGATGGACGCTTGGTACACGGAGTTTATTTGTACGAATCCAAACACTCCACCT
1 CCTATCTCCGTATGATGGACGCTTGGTACACGGAGTTTATTTGTACGAATCCAAACACTCCACCT
77885313 CC
66 CC
*
77885315 CCTATCTCCGTATGATGGACGCTTGGTACACGGAGTTTATTTGTGCGAATCCAAACACTCCACCT
1 CCTATCTCCGTATGATGGACGCTTGGTACACGGAGTTTATTTGTACGAATCCAAACACTCCACCT
77885380 CC
66 CC
77885382 CCTATCTCC
1 CCTATCTCC
77885391 TCCGATTCTT
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 75 1.00
ACGTcount: A:0.22, C:0.31, G:0.17, T:0.29
Consensus pattern (67 bp):
CCTATCTCCGTATGATGGACGCTTGGTACACGGAGTTTATTTGTACGAATCCAAACACTCCACCT
CC
Found at i:77890200 original size:19 final size:19
Alignment explanation
Indices: 77890176--77890214 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
77890166 AAAATAAAAG
77890176 AAGGATGATATCATCCCTT
1 AAGGATGATATCATCCCTT
77890195 AAGGATGATATCATCCCTT
1 AAGGATGATATCATCCCTT
77890214 A
1 A
77890215 CTCATCTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (19 bp):
AAGGATGATATCATCCCTT
Found at i:77891206 original size:47 final size:46
Alignment explanation
Indices: 77891052--77891270 Score: 178
Period size: 47 Copynumber: 4.7 Consensus size: 46
77891042 TGTGTGGGCT
* * * *
77891052 AGTGTAAGA-CATGTCTGGGACATACATCGGCCA-CATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCATGA-GAT-ATAGCC
* * *
77891098 AGTGTAAGACCATGTCTAGGACATGGCATC-GCCATTGAGACTAAAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCA-TGAGA-TATAGCC
* *
77891146 AGTGTAAGA-CATGTCTGGGACATGCATCGGCTATGAGATGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCATGAGAT-ATAGCC
* ** *
77891192 AGTGTAAGACCATGTCTGGGAGATGACATC-TACTTGAGATATGAGCC
1 AGTGTAAGACCATGTCTGGGACATG-CATCGGCCATGAGATAT-AGCC
* * *
77891239 CGTGTAAGACCGTGTCTAGGACATGCCATCGG
1 AGTGTAAGACCATGTCTGGGACATG-CATCGG
77891271 AACCTTACCC
Statistics
Matches: 139, Mismatches: 23, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
45 1 0.01
46 33 0.24
47 81 0.58
48 22 0.16
49 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCATGAGATATAGCC
Found at i:77891255 original size:94 final size:94
Alignment explanation
Indices: 77891052--77891270 Score: 237
Period size: 94 Copynumber: 2.3 Consensus size: 94
77891042 TGTGTGGGCT
* *
77891052 AGTGTAAGACATGTCTGGGACATACATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTAG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTAG
* * *
77891117 GACATGGCATCGCCATTGAGACTAAAGCT
66 GACATGACATCGACATTGAGACTAAAGCC
* * * * *
77891146 AGTGTAAGACATGTCTGGGACATGCATCGGCTATGA-GATGATAGTCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCA-CATGATGAGAGCCAGTGTAAGACCATGTCTA
* * *
77891210 GGAGATGACATCTAC-TTGAGA-TATGAGCC
65 GGACATGACATCGACATTGAGACTA-AAGCC
* * *
77891239 CGTGTAAGACCGTGTCTAGGACATGCCATCGG
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGG
77891271 AACCTTACCC
Statistics
Matches: 105, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
92 2 0.02
93 17 0.16
94 79 0.75
95 7 0.07
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTAG
GACATGACATCGACATTGAGACTAAAGCC
Found at i:77901118 original size:15 final size:14
Alignment explanation
Indices: 77901098--77901161 Score: 56
Period size: 15 Copynumber: 4.3 Consensus size: 14
77901088 GTGTTGTAAA
77901098 TTGGATTTCCTTATC
1 TTGGATTT-CTTATC
*
77901113 TTGGATTTCTTTATT
1 TTGGATTTC-TTATC
** *
77901128 TTGGGCTTCTTCGTC
1 TTGGATTTCTT-ATC
77901143 TTGGATTTCTCTATC
1 TTGGATTTCT-TATC
77901158 TTGG
1 TTGG
77901162 GTTTTCTAGA
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
14 3 0.08
15 34 0.89
16 1 0.03
ACGTcount: A:0.09, C:0.17, G:0.19, T:0.55
Consensus pattern (14 bp):
TTGGATTTCTTATC
Found at i:77901325 original size:52 final size:52
Alignment explanation
Indices: 77901261--77901367 Score: 196
Period size: 52 Copynumber: 2.1 Consensus size: 52
77901251 CAAGTATGAC
*
77901261 TATACCTCTGAATTCATCCTGATAATGTGGTGAAACTTCAAGTCCCAATTTG
1 TATACCTCTGAATTCATCCTGATAATATGGTGAAACTTCAAGTCCCAATTTG
*
77901313 TATACCTCTGAATTGATCCTGATAATATGGTGAAACTTCAAGTCCCAATTTG
1 TATACCTCTGAATTCATCCTGATAATATGGTGAAACTTCAAGTCCCAATTTG
77901365 TAT
1 TAT
77901368 GGGGGATTTC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.36
Consensus pattern (52 bp):
TATACCTCTGAATTCATCCTGATAATATGGTGAAACTTCAAGTCCCAATTTG
Found at i:77901846 original size:14 final size:15
Alignment explanation
Indices: 77901827--77901857 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
77901817 AGAAAGTTCA
77901827 TCTGGATT-TTCTTG
1 TCTGGATTATTCTTG
77901841 TCTGGATTATTCTTG
1 TCTGGATTATTCTTG
77901856 TC
1 TC
77901858 CTTGAAAGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.10, C:0.16, G:0.19, T:0.55
Consensus pattern (15 bp):
TCTGGATTATTCTTG
Done.