Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 271 of 444
Found at i:77905016 original size:46 final size:46
Alignment explanation
Indices: 77904964--77905056 Score: 159
Period size: 46 Copynumber: 2.0 Consensus size: 46
77904954 ATATGAGTCT
* * *
77904964 AGTTTTAGGGAAAATTCACGGATCTTAATTTAGAGTCCTATAGCTC
1 AGTTTTAGGGAAAATTAACAGATATTAATTTAGAGTCCTATAGCTC
77905010 AGTTTTAGGGAAAATTAACAGATATTAATTTAGAGTCCTATAGCTC
1 AGTTTTAGGGAAAATTAACAGATATTAATTTAGAGTCCTATAGCTC
77905056 A
1 A
77905057 AGTTATAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.34
Consensus pattern (46 bp):
AGTTTTAGGGAAAATTAACAGATATTAATTTAGAGTCCTATAGCTC
Found at i:77908648 original size:30 final size:29
Alignment explanation
Indices: 77908605--77908672 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 29
77908595 AACCTATAAC
* *
77908605 CACATATAT-ATTATATATAATAAACCCA
1 CACATATATAATTATATATAACAAAACCA
* *
77908633 CACATATATACATTATGTATAGCAAAACCA
1 CACATATATA-ATTATATATAACAAAACCA
77908663 CACATATATA
1 CACATATATA
77908673 TGTACTATGT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 9 0.26
30 25 0.74
ACGTcount: A:0.49, C:0.19, G:0.03, T:0.29
Consensus pattern (29 bp):
CACATATATAATTATATATAACAAAACCA
Found at i:77909301 original size:21 final size:21
Alignment explanation
Indices: 77909275--77909317 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
77909265 TAATTAAAGT
77909275 TTAATTACATATCTAGATCTC
1 TTAATTACATATCTAGATCTC
77909296 TTAATTACATATCTAGATCTC
1 TTAATTACATATCTAGATCTC
77909317 T
1 T
77909318 AACTTTGCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.44
Consensus pattern (21 bp):
TTAATTACATATCTAGATCTC
Found at i:77912728 original size:55 final size:54
Alignment explanation
Indices: 77912620--77912874 Score: 249
Period size: 55 Copynumber: 4.8 Consensus size: 54
77912610 ATTAGGGTTT
* * *
77912620 AAGGATACCATGTAAGACCATGCCAAGGCATAGCAATTGGTAAGGTT-TCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTCTATAAGGC
* *
77912675 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGGC
* *
77912730 AAAGG-TCCCATGTAAGACCATGCCAAGGA-ATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAA-GACATGGCATTGGTAAGTTCTATAAGGC
* * * * *
77912783 AAGGATACCATGAAAGACCATGTCGAGACATGGCAATGGTAAGTT-T-CAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * * * *
77912832 AATGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
77912875 GTACCCATGT
Statistics
Matches: 171, Mismatches: 22, Indels: 20
0.80 0.10 0.09
Matches are distributed among these distances:
49 37 0.22
52 8 0.05
53 41 0.24
54 8 0.05
55 71 0.42
56 6 0.04
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
Found at i:77912826 original size:108 final size:110
Alignment explanation
Indices: 77912627--77912827 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
77912617 TTTAAGGATA
* *
77912627 CCATGTAAGACCATGCCAAGGCATAGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGAATAGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGAAAGA
*
77912692 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
77912737 CCATGTAAGACCATGCCAAGGAATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGAAAG
1 CCATGTAAGACCATGCCAAGGAATAGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGAAAG
* *
77912799 ACCATGTCGAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
77912828 TCAAAATGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.58
109 7 0.08
110 25 0.30
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGAATAGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGAAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:77917832 original size:19 final size:19
Alignment explanation
Indices: 77917785--77917834 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
77917775 TTAGAAATTT
77917785 TTTTATAAAAATTGTAAAA
1 TTTTATAAAAATTGTAAAA
*** * *
77917804 AAATAAAAAAATTGTGAAA
1 TTTTATAAAAATTGTAAAA
77917823 TTTTATAAAAAT
1 TTTTATAAAAAT
77917835 CATAAAAGTA
Statistics
Matches: 22, Mismatches: 9, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (19 bp):
TTTTATAAAAATTGTAAAA
Found at i:77918198 original size:21 final size:20
Alignment explanation
Indices: 77918168--77918215 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
77918158 TTAAGAATTA
* *
77918168 TTTTAGTATTATTTTTATTT
1 TTTTAATATTATTTTTATGT
*
77918188 GTTTTAATATTTGTTTTTATGT
1 -TTTTAATA-TTATTTTTATGT
77918210 TTTTAA
1 TTTTAA
77918216 ATATATTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.71
Consensus pattern (20 bp):
TTTTAATATTATTTTTATGT
Found at i:77918238 original size:26 final size:24
Alignment explanation
Indices: 77918194--77918243 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
77918184 ATTTGTTTTA
*
77918194 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
77918218 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
77918244 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:77918627 original size:29 final size:29
Alignment explanation
Indices: 77918592--77918675 Score: 91
Period size: 29 Copynumber: 2.9 Consensus size: 29
77918582 ACGACTTTAA
77918592 AAAATTTTATAACTTTTTTTATATTTCT-AT
1 AAAATTTTATAA-TTTTTTTATATTT-TGAT
* * * *
77918622 -ATATTTTATAGTTTTTTAAGATTTTGAT
1 AAAATTTTATAATTTTTTTATATTTTGAT
*
77918650 AAAATTTTACAATTTTTTTATATTTT
1 AAAATTTTATAATTTTTTTATATTTT
77918676 ATTTTACTAT
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
27 1 0.02
28 13 0.30
29 29 0.67
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.61
Consensus pattern (29 bp):
AAAATTTTATAATTTTTTTATATTTTGAT
Found at i:77918679 original size:23 final size:23
Alignment explanation
Indices: 77918653--77918698 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
77918643 TTTTGATAAA
*
77918653 ATTTTACAATTTTTTTATATTTT
1 ATTTTACAATTTTTATATATTTT
* *
77918676 ATTTTACTATTTTTATATTTTTT
1 ATTTTACAATTTTTATATATTTT
77918699 TAATTTTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (23 bp):
ATTTTACAATTTTTATATATTTT
Found at i:77918727 original size:26 final size:26
Alignment explanation
Indices: 77918677--77918727 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
77918667 TTATATTTTA
* *
77918677 TTTTACTATTTTTATATTTTTTTAAT
1 TTTTAATATTTTAATATTTTTTTAAT
77918703 TTTTAATATTTTAAT-TTTTTATTAA
1 TTTTAATATTTTAATATTTTT-TTAA
77918728 AATTTATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (26 bp):
TTTTAATATTTTAATATTTTTTTAAT
Found at i:77918733 original size:26 final size:26
Alignment explanation
Indices: 77918678--77918733 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
77918668 TATATTTTAT
* * **
77918678 TTTACTATTTTTATATTTTTTTAATT
1 TTTAATATTTTAATATTTTTTTAAAA
77918704 TTTAATATTTTAAT-TTTTTATTAAAA
1 TTTAATATTTTAATATTTTT-TTAAAA
77918730 TTTA
1 TTTA
77918734 TTAAAATTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (26 bp):
TTTAATATTTTAATATTTTTTTAAAA
Found at i:77918735 original size:10 final size:10
Alignment explanation
Indices: 77918720--77918754 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
77918710 ATTTTAATTT
77918720 TTTATTAAAA
1 TTTATTAAAA
77918730 TTTATTAAAA
1 TTTATTAAAA
* *
77918740 TTTAATAATA
1 TTTATTAAAA
77918750 TTTAT
1 TTTAT
77918755 AGCTTTTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (10 bp):
TTTATTAAAA
Found at i:77921527 original size:24 final size:24
Alignment explanation
Indices: 77921500--77921551 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
77921490 CCAAATACAA
77921500 TTGTAAATGGATTCTCTTCAAAGT
1 TTGTAAATGGATTCTCTTCAAAGT
77921524 TTGTAAATGGATTCTCTTCAAAGT
1 TTGTAAATGGATTCTCTTCAAAGT
77921548 TTGT
1 TTGT
77921552 CAGAAATTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.27, C:0.12, G:0.17, T:0.44
Consensus pattern (24 bp):
TTGTAAATGGATTCTCTTCAAAGT
Found at i:77921868 original size:20 final size:21
Alignment explanation
Indices: 77921820--77921872 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
77921810 AGAAAAATAT
*
77921820 ATAAAATTAT-TAAATATTAA
1 ATAAAATAATATAAATATTAA
77921840 ATTAAAATAATATAAATATTAA
1 A-TAAAATAATATAAATATTAA
77921862 A-AAAATAATAT
1 ATAAAATAATAT
77921873 GGGCGGACCT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 11 0.37
21 8 0.27
22 11 0.37
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (21 bp):
ATAAAATAATATAAATATTAA
Found at i:77922065 original size:5 final size:5
Alignment explanation
Indices: 77922019--77922064 Score: 74
Period size: 5 Copynumber: 9.2 Consensus size: 5
77922009 AAATCCAACC
* *
77922019 CGACT CGACT CGACT CGACT CGACT CGACT CGACT CAACT CAACT C
1 CGACT CGACT CGACT CGACT CGACT CGACT CGACT CGACT CGACT C
77922065 ATGACCACCT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
5 40 1.00
ACGTcount: A:0.24, C:0.41, G:0.15, T:0.20
Consensus pattern (5 bp):
CGACT
Found at i:77922378 original size:14 final size:15
Alignment explanation
Indices: 77922347--77922380 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
77922337 AAATTAATAA
*
77922347 TTTAATATAAGTATT
1 TTTAATATAAGAATT
77922362 TTTAATATAA-AATT
1 TTTAATATAAGAATT
77922376 TTTAA
1 TTTAA
77922381 CACAATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (15 bp):
TTTAATATAAGAATT
Found at i:77926014 original size:20 final size:19
Alignment explanation
Indices: 77925991--77926063 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 19
77925981 TGTGTAAAAA
77925991 TTATTATATATTATATCTTT
1 TTATTAT-TATTATATCTTT
*
77926011 TTATTATTCATTATATTATTT
1 TTATTATT-ATTATA-TCTTT
* *
77926032 TTATT-TTACTATATCATT
1 TTATTATTATTATATCTTT
77926050 TTATTATTAATTAT
1 TTATTATT-ATTAT
77926064 TTATTATGTA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
18 8 0.18
19 8 0.18
20 19 0.43
21 9 0.20
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.64
Consensus pattern (19 bp):
TTATTATTATTATATCTTT
Found at i:77926050 original size:19 final size:21
Alignment explanation
Indices: 77926002--77926057 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 21
77925992 TATTATATAT
*
77926002 TATATC-TTTTTATTATTCAT
1 TATATCATTTTTATTATTCAC
*
77926022 TATATTATTTTTATT-TT-AC
1 TATATCATTTTTATTATTCAC
77926041 TATATCA-TTTTATTATT
1 TATATCATTTTTATTATT
77926058 AATTATTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 7 0.23
19 9 0.29
20 7 0.23
21 8 0.26
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.66
Consensus pattern (21 bp):
TATATCATTTTTATTATTCAC
Found at i:77926066 original size:27 final size:26
Alignment explanation
Indices: 77925997--77926065 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 26
77925987 AAAATTATTA
*
77925997 TATATTA-TATCT-TTTTATTATTCAT
1 TATATTATTAT-TATTTTACTATTCAT
*
77926022 TATATTATTTTTATTTTACTATATCAT
1 TATATTATTATTATTTTACTAT-TCAT
*
77926049 TTTATTATTAATTATTT
1 TATATTATT-ATTATTT
77926066 ATTATGTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
25 8 0.22
26 10 0.28
27 12 0.33
28 6 0.17
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (26 bp):
TATATTATTATTATTTTACTATTCAT
Found at i:77938225 original size:45 final size:45
Alignment explanation
Indices: 77938176--77938320 Score: 145
Period size: 45 Copynumber: 3.2 Consensus size: 45
77938166 GTAGATCGTT
*
77938176 GATAGCAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAA
1 GATAGCAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAA
* * * * * *
77938221 GATAGCAGATCTGACAT-TCGTGTGTTTACATC--GAAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTC-TGT-ATTAGA-CGGGGAGCAGATCGAA
* *
77938266 GAT-GACAAATTTGGCGTCTCTGGATTAGACGGGGAGCAGATCGAA
1 GATAG-CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAA
77938311 GATAGCAGAT
1 GATAGCAGAT
77938321 CTGACATTCG
Statistics
Matches: 76, Mismatches: 16, Indels: 16
0.70 0.15 0.15
Matches are distributed among these distances:
43 1 0.01
44 7 0.09
45 60 0.79
46 7 0.09
47 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.24
Consensus pattern (45 bp):
GATAGCAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAA
Found at i:77938321 original size:90 final size:90
Alignment explanation
Indices: 77938184--77938377 Score: 334
Period size: 90 Copynumber: 2.2 Consensus size: 90
77938174 TTGATAGCAG
*
77938184 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGACATTCGTGTGTTTA
1 ATTTGGCGTCTCTGGATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGACATTCGTGTGTTTA
77938249 CATCGAAGCAGATCGAAGATGACAA
66 CATCGAAGCAGATCGAAGATGACAA
*
77938274 ATTTGGCGTCTCTGGATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTA
1 ATTTGGCGTCTCTGGATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGACATTCGTGTGTTTA
* * *
77938339 CATTGAAGTAGATCGAAGATGACAG
66 CATCGAAGCAGATCGAAGATGACAA
*
77938364 ATTTGGCATCTCTG
1 ATTTGGCGTCTCTG
77938378 TATTTGTAAC
Statistics
Matches: 98, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
90 98 1.00
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (90 bp):
ATTTGGCGTCTCTGGATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGACATTCGTGTGTTTA
CATCGAAGCAGATCGAAGATGACAA
Found at i:77938352 original size:45 final size:45
Alignment explanation
Indices: 77938210--77938358 Score: 144
Period size: 45 Copynumber: 3.3 Consensus size: 45
77938200 TTAGACGGGG
*
77938210 AGCAGATCAAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
* * * * * * *
77938255 AGCAGATCGAAGAT-GACAAATTTGGCGTCTC-TG-GATTAGA-CGGGG
1 AGCAGATCGAAGATAG-CAGATCTGACAT-TCGTGTGTTTACATC--GA
*
77938300 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATTGA
1 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
*
77938345 AGTAGATCGAAGAT
1 AGCAGATCGAAGAT
77938359 GACAGATTTG
Statistics
Matches: 79, Mismatches: 17, Indels: 16
0.71 0.15 0.14
Matches are distributed among these distances:
43 1 0.01
44 8 0.10
45 62 0.78
46 8 0.10
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (45 bp):
AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
Found at i:77939872 original size:39 final size:39
Alignment explanation
Indices: 77939808--77940001 Score: 316
Period size: 39 Copynumber: 4.9 Consensus size: 39
77939798 CCCGCTCAAA
*
77939808 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAAT
* *
77939848 TGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
* *
77939887 TGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
*
77939926 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACAAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
*
77939965 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
77940002 TTCATTCACA
Statistics
Matches: 148, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 138 0.93
40 10 0.07
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (39 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
Found at i:77948605 original size:45 final size:45
Alignment explanation
Indices: 77948556--77948700 Score: 145
Period size: 45 Copynumber: 3.2 Consensus size: 45
77948546 GTAGATCGTT
*
77948556 GATAGCAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAA
1 GATAGCAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAA
* * * * * *
77948601 GATAGCAGATCTGACAT-TCATGTGTTTACATC--GAAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTC-TGT-ATTAGA-CGGGGAGCAGATCGAA
* *
77948646 GAT-GACAAATTTGGCGTCTCTGGATTAGACGGGGAGCAGATCGAA
1 GATAG-CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAA
77948691 GATAGCAGAT
1 GATAGCAGAT
77948701 CTGACATTCG
Statistics
Matches: 76, Mismatches: 16, Indels: 16
0.70 0.15 0.15
Matches are distributed among these distances:
43 1 0.01
44 7 0.09
45 60 0.79
46 7 0.09
47 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (45 bp):
GATAGCAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAA
Found at i:77948701 original size:90 final size:90
Alignment explanation
Indices: 77948564--77948757 Score: 325
Period size: 90 Copynumber: 2.2 Consensus size: 90
77948554 TTGATAGCAG
*
77948564 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGACATTCATGTGTTTA
1 ATTTGGCGTCTCTGGATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGACATTCATGTGTTTA
77948629 CATCGAAGCAGATCGAAGATGACAA
66 CATCGAAGCAGATCGAAGATGACAA
* *
77948654 ATTTGGCGTCTCTGGATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTA
1 ATTTGGCGTCTCTGGATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGACATTCATGTGTTTA
* * *
77948719 CATTGAAGTAGATCGAAGATGACAG
66 CATCGAAGCAGATCGAAGATGACAA
*
77948744 ATTTGGCATCTCTG
1 ATTTGGCGTCTCTG
77948758 TATTTGTAAC
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
90 97 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (90 bp):
ATTTGGCGTCTCTGGATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGACATTCATGTGTTTA
CATCGAAGCAGATCGAAGATGACAA
Found at i:77948732 original size:45 final size:44
Alignment explanation
Indices: 77948590--77948738 Score: 133
Period size: 45 Copynumber: 3.3 Consensus size: 44
77948580 TTAGACGGGG
*
77948590 AGCAGATCAAAGATAGCAGATCTGACATTCATGTGTTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTC-TGTGTTTACATCGA
* * * * * * *
77948635 AGCAGATCGAAGAT-GACAAATTTGGCGTCTCTG-GATTAGA-CGGGG
1 AGCAGATCGAAGATAG-CAGATCTGACAT-TCTGTGTTTACATC--GA
*
77948680 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATTGA
1 AGCAGATCGAAGATAGCAGATCTGACATTC-TGTGTTTACATCGA
*
77948725 AGTAGATCGAAGAT
1 AGCAGATCGAAGAT
77948739 GACAGATTTG
Statistics
Matches: 79, Mismatches: 17, Indels: 16
0.71 0.15 0.14
Matches are distributed among these distances:
43 1 0.01
44 8 0.10
45 62 0.78
46 8 0.10
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (44 bp):
AGCAGATCGAAGATAGCAGATCTGACATTCTGTGTTTACATCGA
Found at i:77950260 original size:39 final size:39
Alignment explanation
Indices: 77950196--77950389 Score: 316
Period size: 39 Copynumber: 4.9 Consensus size: 39
77950186 CCCGCTCAAA
*
77950196 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAAT
* *
77950236 TGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
* *
77950275 TGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
*
77950314 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACAAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
*
77950353 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
77950390 TTCATTCACA
Statistics
Matches: 148, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 138 0.93
40 10 0.07
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (39 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
Found at i:77952132 original size:90 final size:90
Alignment explanation
Indices: 77951977--77952469 Score: 702
Period size: 90 Copynumber: 5.5 Consensus size: 90
77951967 GGCTGTCACA
* **
77951977 GTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCATGTGTTTACATCGAAGTAGAT
1 GTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAACAGAT
* * *
77952042 CAAAAATGACAGATTTGGCATCTCT
66 CGAAGATGACAGATTTGGCGTCTCT
* *
77952067 GTATTAGACGGGGAGCAGATCGAAGATACCAGATTTGACATTCGTGTGTTTACATCGAAACAGAT
1 GTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAACAGAT
* *
77952132 CGAAGATAATAGATTTGGCGTC-CT
66 CGAAGATGACAGATTTGGCGTCTCT
* * * *
77952156 GTATTAGACGGGGAGTAGATCGAAGATAGCAGATCTGACATTCATGTGTTTACATTGAATCAGAT
1 GTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAACAGAT
77952221 CGAAGATGACAGATTTGGCGTCTCT
66 CGAAGATGACAGATTTGGCGTCTCT
* * *
77952246 GTATTAGACAGCGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTATATCGAAACAGAT
1 GTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAACAGAT
* *
77952311 TGAAGATGACAGATTTGGTGTCTCT
66 CGAAGATGACAGATTTGGCGTCTCT
* * * * *
77952336 GTATTAGACGAGGAGTAGATCAAAAATAGCAGATCTGACATTCGTGTGTTTACATC-AAAGCTGA
1 GTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAA-CAGA
*
77952400 TCGAAGATAACAGATTTGGCGTCTCT
65 TCGAAGATGACAGATTTGGCGTCTCT
* * * *
77952426 GTATTAAACAGGGAGCAGATCAAAGATAGTAGATCTGACATTCG
1 GTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
77952470 AAGCAGATCG
Statistics
Matches: 357, Mismatches: 44, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
89 84 0.24
90 273 0.76
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.27
Consensus pattern (90 bp):
GTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAACAGAT
CGAAGATGACAGATTTGGCGTCTCT
Found at i:77952493 original size:77 final size:78
Alignment explanation
Indices: 77952393--77952636 Score: 301
Period size: 77 Copynumber: 3.0 Consensus size: 78
77952383 GTTTACATCA
*
77952393 AAGCTGATCGAAGATAACAGATTTGGCGTCTCTGTATTAAACAGGGAGCAGATCAAAGATAGTAG
1 AAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAAACAGGGAGCAGATCAAAGATAGTAG
77952458 ATCTGACATTCG-
66 ATCTGACATTCGC
* *
77952470 AAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAAACAGGGAGGAGATCAAAGATAGCAG
1 AAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAAACAGGGAGCAGATCAAAGATAGTAG
77952535 ATCTGACATTCGTATGCTTACATC
66 ATCTGACATTC----G-------C
* * * * *
77952559 GAAGCAGATTGAAGATGACAGATTTGGCCTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGTA
1 -AAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAAACAGGGAGCAGATCAAAGATAGTA
77952624 GATCTGACATTCG
65 GATCTGACATTCG
77952637 TGTGTTTACA
Statistics
Matches: 144, Mismatches: 10, Indels: 17
0.84 0.06 0.10
Matches are distributed among these distances:
77 73 0.51
81 1 0.01
86 1 0.01
90 69 0.48
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (78 bp):
AAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAAACAGGGAGCAGATCAAAGATAGTAG
ATCTGACATTCGC
Found at i:77952574 original size:45 final size:44
Alignment explanation
Indices: 77952519--77952797 Score: 146
Period size: 45 Copynumber: 6.2 Consensus size: 44
77952509 AACAGGGAGG
*
77952519 AGATCAAAGATAGCAGATCTGACATTCGTATGCTTACATCGAAGC
1 AGATCGAAGATAGCAGATCTGACATTCGTATG-TTACATCGAAGC
* * * * * * *
77952564 AGATTGAAGAT-GACAGATTTGGCCTCTCTGTAT-TAGACA-GGGAGC
1 AGATCGAAGATAG-CAGATCTGACAT-TC-GTATGT-TACATCGAAGC
* *
77952609 AGATCGAAGATAGTAGATCTGACATTCGTGTGTTTACATCGAAGC
1 AGATCGAAGATAGCAGATCTGACATTCGTATG-TTACATCGAAGC
* * * *
77952654 AGATCGAAGAT-GACAGATTTGGA-A-TC-TTTGTATTAGA-CGGGGAGC
1 AGATCGAAGATAG-CAGATCT-GACATTCGTATG--TTACATC--GAAGC
* * * * *
77952699 AAATCGAGGATAGCAAATCTGACATTTGTGTGTTTACATCGAAGC
1 AGATCGAAGATAGCAGATCTGACATTCGTATG-TTACATCGAAGC
* * * *
77952744 AGATC-AA-AGAGCAAATCTGACATTTGTGTGTTTACATCGAAGC
1 AGATCGAAGATAGCAGATCTGACATTCGTATG-TTACATCGAAGC
*
77952787 AGATCAAAGAT
1 AGATCGAAGAT
77952798 GATAGATTTG
Statistics
Matches: 178, Mismatches: 36, Indels: 40
0.70 0.14 0.16
Matches are distributed among these distances:
43 47 0.26
44 18 0.10
45 91 0.51
46 14 0.08
47 8 0.04
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.27
Consensus pattern (44 bp):
AGATCGAAGATAGCAGATCTGACATTCGTATGTTACATCGAAGC
Found at i:77952595 original size:167 final size:167
Alignment explanation
Indices: 77952300--77952636 Score: 514
Period size: 167 Copynumber: 2.0 Consensus size: 167
77952290 TGTGTTTATA
* * * * *
77952300 TCGAAACAGATTGAAGATGACAGATTTGGTGTCTCTGTATTAGACGAGGAGTAGATCAAAAATAG
1 TCGAAACAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAAACGAGGAGGAGATCAAAAATAG
* * * *
77952365 CAGATCTGACATTCGTGTGTTTACATCAAAGCTGATCGAAGATAACAGATTTGGCGTCTCTGTAT
66 CAGATCTGACATTCGTATGCTTACATCAAAGCAGATCGAAGATAACAGATTTGGCCTCTCTGTAT
77952430 TAAACAGGGAGCAGATCAAAGATAGTAGATCTGACAT
131 TAAACAGGGAGCAGATCAAAGATAGTAGATCTGACAT
* *
77952467 TCGAAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAAAC-AGGGAGGAGATCAAAGATA
1 TCGAAACAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAAACGA-GGAGGAGATCAAAAATA
* * *
77952531 GCAGATCTGACATTCGTATGCTTACATCGAAGCAGATTGAAGATGACAGATTTGGCCTCTCTGTA
65 GCAGATCTGACATTCGTATGCTTACATCAAAGCAGATCGAAGATAACAGATTTGGCCTCTCTGTA
* *
77952596 TTAGACAGGGAGCAGATCGAAGATAGTAGATCTGACAT
130 TTAAACAGGGAGCAGATCAAAGATAGTAGATCTGACAT
77952634 TCG
1 TCG
77952637 TGTGTTTACA
Statistics
Matches: 153, Mismatches: 16, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
166 1 0.01
167 152 0.99
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (167 bp):
TCGAAACAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAAACGAGGAGGAGATCAAAAATAG
CAGATCTGACATTCGTATGCTTACATCAAAGCAGATCGAAGATAACAGATTTGGCCTCTCTGTAT
TAAACAGGGAGCAGATCAAAGATAGTAGATCTGACAT
Found at i:77952620 original size:90 final size:90
Alignment explanation
Indices: 77952467--77952753 Score: 412
Period size: 90 Copynumber: 3.2 Consensus size: 90
77952457 GATCTGACAT
* * * * *
77952467 TCGAAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAAACAGGGAGGAGATCAAAGATAG
1 TCGAAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGATAG
* *
77952532 CAGATCTGACATTCGTATGCTTACA
66 CAGATCTGACATTCGTGTGTTTACA
* *
77952557 TCGAAGCAGATTGAAGATGACAGATTTGGCCTCTCTGTATTAGACAGGGAGCAGATCGAAGATAG
1 TCGAAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGATAG
*
77952622 TAGATCTGACATTCGTGTGTTTACA
66 CAGATCTGACATTCGTGTGTTTACA
* * * * *
77952647 TCGAAGCAGATCGAAGATGACAGATTTGGAATCTTTGTATTAGACGGGGAGCAAATCGAGGATAG
1 TCGAAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGATAG
* *
77952712 CAAATCTGACATTTGTGTGTTTACA
66 CAGATCTGACATTCGTGTGTTTACA
*
77952737 TCGAAGCAGATCAAAGA
1 TCGAAGCAGATCGAAGA
77952754 GCAAATCTGA
Statistics
Matches: 177, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
90 177 1.00
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (90 bp):
TCGAAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGATAG
CAGATCTGACATTCGTGTGTTTACA
Found at i:77952629 original size:347 final size:346
Alignment explanation
Indices: 77952121--77952753 Score: 969
Period size: 347 Copynumber: 1.8 Consensus size: 346
77952111 TGTGTTTACA
* * * * *
77952121 TCGAAACAGATCGAAGATAATAGATTTGGCGTCCTGTATTAGACGGGGAGTAGATCGAAGATAGC
1 TCGAAACAGATCGAAGATAACAGATTTGGCGTCCTGTATTAAACAGGGAGGAGATCAAAGATAGC
* * * * *
77952186 AGATCTGACATTCATGTGTTTACATTGAATCAGATCGAAGATGACAGATTTGGCGTCTCTGTATT
66 AGATCTGACATTCATATGCTTACATCGAAGCAGATCGAAGATGACAGATTTGGCCTCTCTGTATT
* *
77952251 AGACAGCGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTATATCGAAACAGATTGAAG
131 AGACAGCGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAACAGATCGAAG
** * * *
77952316 ATGACAGATTTGGTGTCTCTGTATTAGACGAGGAGTAGATCAAAAATAGCAGATCTGACATTCGT
196 ATGACAGATTTGGAATCTCTGTATTAGACGAGGAGCAAATCAAAAATAGCAAATCTGACATTCGT
* *
77952381 GTGTTTACATCAAAGCTGATCGAAGATAACAGATTTGGCGTCTCTGTATTAAACAGGGAGCAGAT
261 GTGTTTACATCAAAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTATTAAACAGGGAGCAGAT
77952446 CAAAGATAGTAGATCTGACAT
326 CAAAGATAGTAGATCTGACAT
*
77952467 TCGAAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAAACAGGGAGGAGATCAAAGATAG
1 TCGAAACAGATCGAAGATAACAGATTTGGCGTC-CTGTATTAAACAGGGAGGAGATCAAAGATAG
* *
77952532 CAGATCTGACATTCGTATGCTTACATCGAAGCAGATTGAAGATGACAGATTTGGCCTCTCTGTAT
65 CAGATCTGACATTCATATGCTTACATCGAAGCAGATCGAAGATGACAGATTTGGCCTCTCTGTAT
* * *
77952597 TAGACAGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAA
130 TAGACAGCGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAACAGATCGAA
* * * ** *
77952662 GATGACAGATTTGGAATCTTTGTATTAGACGGGGAGCAAATCGAGGATAGCAAATCTGACATTTG
195 GATGACAGATTTGGAATCTCTGTATTAGACGAGGAGCAAATCAAAAATAGCAAATCTGACATTCG
*
77952727 TGTGTTTACATCGAAGCAGATCAAAGA
260 TGTGTTTACATCAAAGCAGATCAAAGA
77952754 GCAAATCTGA
Statistics
Matches: 254, Mismatches: 32, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
346 31 0.12
347 223 0.88
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (346 bp):
TCGAAACAGATCGAAGATAACAGATTTGGCGTCCTGTATTAAACAGGGAGGAGATCAAAGATAGC
AGATCTGACATTCATATGCTTACATCGAAGCAGATCGAAGATGACAGATTTGGCCTCTCTGTATT
AGACAGCGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAACAGATCGAAG
ATGACAGATTTGGAATCTCTGTATTAGACGAGGAGCAAATCAAAAATAGCAAATCTGACATTCGT
GTGTTTACATCAAAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTATTAAACAGGGAGCAGAT
CAAAGATAGTAGATCTGACAT
Found at i:77952672 original size:257 final size:256
Alignment explanation
Indices: 77952207--77952724 Score: 750
Period size: 257 Copynumber: 2.0 Consensus size: 256
77952197 TCATGTGTTT
* * * *
77952207 ACATTGAATCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGCGAGCAGATCGAAGA
1 ACATTGAAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAAACAGCGAGCAGATCAAAGA
* * * **
77952272 TAGCAGATCTGACATTCGTGTGTTTATATCGAAACAGATTGAAGATGACAGATTTGGTGTCTCTG
66 TAGCAGATCTGACATTCGTATGCTTACATCGAAACAGATTGAAGATGACAGATTTGGCCTCTCTG
* *
77952337 TATTAGACGAGGAGTAGATCAAAAATAGCAGATCTGACATTCGTGTGTTTACATCAAAGCTGATC
131 TATTAGACGAGGAGCAGATCAAAAATAGCAGATCTGACATTCGTGTGTTTACATCAAAGCAGATC
** * * *
77952402 GAAGATAACAGATTTGGCGTCTCTGTATTAAACAGGGAGCAGATCAAAGATAGTAGATCTG
196 GAAGATAACAGATTTGGAATCTCTGTATTAAACAGGGAGCAAATCAAAGATAGCAAATCTG
* *
77952463 ACATTCGAAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAAACAGGGAGGAGATCAAAG
1 ACATT-GAAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAAACAGCGAGCAGATCAAAG
*
77952528 ATAGCAGATCTGACATTCGTATGCTTACATCGAAGCAGATTGAAGATGACAGATTTGGCCTCTCT
65 ATAGCAGATCTGACATTCGTATGCTTACATCGAAACAGATTGAAGATGACAGATTTGGCCTCTCT
* * * *
77952593 GTATTAGAC-AGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGTTTACATCGAAGCAGA
130 GTATTAGACGA-GGAGCAGATCAAAAATAGCAGATCTGACATTCGTGTGTTTACATCAAAGCAGA
* * * * * *
77952657 TCGAAGATGACAGATTTGGAATCTTTGTATTAGACGGGGAGCAAATCGAGGATAGCAAATCTG
194 TCGAAGATAACAGATTTGGAATCTCTGTATTAAACAGGGAGCAAATCAAAGATAGCAAATCTG
77952720 ACATT
1 ACATT
77952725 TGTGTGTTTA
Statistics
Matches: 231, Mismatches: 29, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
256 6 0.03
257 225 0.97
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.26
Consensus pattern (256 bp):
ACATTGAAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAAACAGCGAGCAGATCAAAGA
TAGCAGATCTGACATTCGTATGCTTACATCGAAACAGATTGAAGATGACAGATTTGGCCTCTCTG
TATTAGACGAGGAGCAGATCAAAAATAGCAGATCTGACATTCGTGTGTTTACATCAAAGCAGATC
GAAGATAACAGATTTGGAATCTCTGTATTAAACAGGGAGCAAATCAAAGATAGCAAATCTG
Found at i:77952740 original size:35 final size:37
Alignment explanation
Indices: 77952701--77952783 Score: 98
Period size: 43 Copynumber: 2.1 Consensus size: 37
77952691 CGGGGAGCAA
77952701 ATCGAG-GAT-AGCAAATCTGACATTTGTGTGTTTAC
1 ATCGAGAGATAAGCAAATCTGACATTTGTGTGTTTAC
77952736 ATCGAAGCAGATCAAAGAGCAAATCTGACATTTGTGTGTTTAC
1 ATCG-AG-AGAT---A-AGCAAATCTGACATTTGTGTGTTTAC
77952779 ATCGA
1 ATCGA
77952784 AGCAGATCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
35 4 0.10
36 2 0.05
38 3 0.08
42 1 0.03
43 30 0.75
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.30
Consensus pattern (37 bp):
ATCGAGAGATAAGCAAATCTGACATTTGTGTGTTTAC
Found at i:77952758 original size:43 final size:43
Alignment explanation
Indices: 77952710--77952796 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
77952700 AATCGAGGAT
77952710 AGCAAATCTGACATTTGTGTGTTTACATCGAAGCAGATCAAAG
1 AGCAAATCTGACATTTGTGTGTTTACATCGAAGCAGATCAAAG
77952753 AGCAAATCTGACATTTGTGTGTTTACATCGAAGCAGATCAAAG
1 AGCAAATCTGACATTTGTGTGTTTACATCGAAGCAGATCAAAG
77952796 A
1 A
77952797 TGATAGATTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.28
Consensus pattern (43 bp):
AGCAAATCTGACATTTGTGTGTTTACATCGAAGCAGATCAAAG
Found at i:77957862 original size:23 final size:25
Alignment explanation
Indices: 77957827--77957872 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 25
77957817 ATGGCTATGC
*
77957827 GTGAAAAGGAAGAA-GAA-AATGTA
1 GTGAAAAGAAAGAATGAAGAATGTA
*
77957850 GTGAGAAGAAAGAATGAAGAATG
1 GTGAAAAGAAAGAATGAAGAATG
77957873 AATGTTGAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 12 0.63
24 3 0.16
25 4 0.21
ACGTcount: A:0.54, C:0.00, G:0.33, T:0.13
Consensus pattern (25 bp):
GTGAAAAGAAAGAATGAAGAATGTA
Found at i:77979987 original size:76 final size:80
Alignment explanation
Indices: 77979888--77980039 Score: 206
Period size: 78 Copynumber: 1.9 Consensus size: 80
77979878 ATTTGATGTG
77979888 TATCCGGGCTTAAAGACCCGCAGG-CTATATGCTGGAATTATATCCG-GGTTAAA-TCCCGCAGG
1 TATCCGGGCTTAAAGACCCGCAGGCCTA-ATGCTGGAATTATATCCGAGGTTAAAGTCCCGCAGG
77979950 CTTCGTGCTGGTAATA
65 CTTCGTGCTGGTAATA
* * * * * *
77979966 TATCCGGG-TTAAA-TCCCGCAGGCCTAGTGCTGGTATTATATCTGAGTTTAAAGTCCCGTAGGC
1 TATCCGGGCTTAAAGACCCGCAGGCCTAATGCTGGAATTATATCCGAGGTTAAAGTCCCGCAGGC
77980029 TTCGTGCTGGT
66 TTCGTGCTGGT
77980040 GTTATGTTTG
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
76 23 0.35
77 14 0.22
78 28 0.43
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (80 bp):
TATCCGGGCTTAAAGACCCGCAGGCCTAATGCTGGAATTATATCCGAGGTTAAAGTCCCGCAGGC
TTCGTGCTGGTAATA
Found at i:77980036 original size:40 final size:38
Alignment explanation
Indices: 77979888--77980044 Score: 172
Period size: 38 Copynumber: 4.0 Consensus size: 38
77979878 ATTTGATGTG
* * *
77979888 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCGTGCTGGTATTA
*
77979928 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* *
77979966 TATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* * * *
77980004 TATCTGAGTTTAAAGTCCCGTAGGCTTCGTGCTGGTGTTA
1 TATCCG-GGTTAAA-TCCCGCAGGCTTCGTGCTGGTATTA
77980044 T
1 T
77980045 GTTTGGGTTT
Statistics
Matches: 101, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
37 1 0.01
38 59 0.58
39 11 0.11
40 30 0.30
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.31
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
Found at i:77980173 original size:2 final size:2
Alignment explanation
Indices: 77980166--77980196 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
77980156 CAGGTATGTG
77980166 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77980197 GTGAGATTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:77983212 original size:20 final size:20
Alignment explanation
Indices: 77983153--77983214 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 20
77983143 TCAATACCCT
77983153 TGAATGCACAAATGTGCCCC
1 TGAATGCACAAATGTGCCCC
* * **** *
77983173 TGATTGTACTTCGGTACCCC
1 TGAATGCACAAATGTGCCCC
77983193 TGAATGCACAAATGTGCCCC
1 TGAATGCACAAATGTGCCCC
77983213 TG
1 TG
77983215 GTTGTACTTC
Statistics
Matches: 28, Mismatches: 14, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (20 bp):
TGAATGCACAAATGTGCCCC
Found at i:77983326 original size:40 final size:40
Alignment explanation
Indices: 77983033--77983350 Score: 309
Period size: 40 Copynumber: 8.0 Consensus size: 40
77983023 AATTATTGTG
* * * *
77983033 TGAATGCCCATACTTGCCCCT-ATTTGTACTTCAGCACCCC
1 TGAATGCACATACGTGCCCCTGA-TTGTACTTCGGTACCCC
* * * * **
77983073 TGAATGCACATGCGTGCCCTTGTTTGTACTTTGGTACCTT
1 TGAATGCACATACGTGCCCCTGATTGTACTTCGGTACCCC
** *
77983113 TGAATGCACATACGTGCCCCTGATTGTACTTCAATACCCT
1 TGAATGCACATACGTGCCCCTGATTGTACTTCGGTACCCC
* *
77983153 TGAATGCACAAATGTGCCCCTGATTGTACTTCGGTACCCC
1 TGAATGCACATACGTGCCCCTGATTGTACTTCGGTACCCC
* * *
77983193 TGAATGCACAAATGTGCCCCTGGTTGTACTTCGGTA-CCC
1 TGAATGCACATACGTGCCCCTGATTGTACTTCGGTACCCC
* * * * * *
77983232 TCGAATACACAAACGTACCCCTGATTGTACTTCAGTGCCTC
1 T-GAATGCACATACGTGCCCCTGATTGTACTTCGGTACCCC
* * *
77983273 TGAATGCACATACATGACCCTGTTTGTACTTCGGTACCCC
1 TGAATGCACATACGTGCCCCTGATTGTACTTCGGTACCCC
* * * *
77983313 TGAATGCATATACATGCTCTTGATTGTACTAT-GGTACC
1 TGAATGCACATACGTGCCCCTGATTGTACT-TCGGTACC
77983351 TCTAAGAACA
Statistics
Matches: 230, Mismatches: 44, Indels: 8
0.82 0.16 0.03
Matches are distributed among these distances:
39 4 0.02
40 222 0.97
41 4 0.02
ACGTcount: A:0.22, C:0.29, G:0.18, T:0.31
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCCTGATTGTACTTCGGTACCCC
Found at i:77983340 original size:120 final size:119
Alignment explanation
Indices: 77983033--77983350 Score: 359
Period size: 120 Copynumber: 2.6 Consensus size: 119
77983023 AATTATTGTG
* * * * * * *
77983033 TGAATGCCCATACTTGCCCCTATTTGTACTTCAGCACCCCTGAATGCACATGCGTGCCCTTGTTT
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCCTGAATGCACATACGTGCCCTTGATT
* * * * *
77983098 GTACTTTGGTACCTTTGAATGCACATACGTGCCCCTGATTGTACTTCAATACCCT
66 GTAC-TTGGTACCCTCGAATACACAAACGTACCCCTGATTGTACTTCAATACCCT
* ** * * * * *
77983153 TGAATGCACAAATGTGCCCCTGATTGTACTTCGGTACCCCTGAATGCACAAATGTGCCCCTGGTT
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCCTGAATGCACATACGTGCCCTTGATT
* *
77983218 GTACTTCGGTACCCTCGAATACACAAACGTACCCCTGATTGTACTTCAGT-GCCT
66 GTACTT-GGTACCCTCGAATACACAAACGTACCCCTGATTGTACTTCAATACCCT
* * * *
77983272 CTGAATGCACATACATGACCCTGTTTGTACTTCGGTACCCCTGAATGCATATACATGCTCTTGAT
1 -TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCCTGAATGCACATACGTGCCCTTGAT
77983337 TGTACTATGGTACC
65 TGTACT-TGGTACC
77983351 TCTAAGAACA
Statistics
Matches: 163, Mismatches: 32, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
119 5 0.03
120 157 0.96
121 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.18, T:0.31
Consensus pattern (119 bp):
TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCCTGAATGCACATACGTGCCCTTGATT
GTACTTGGTACCCTCGAATACACAAACGTACCCCTGATTGTACTTCAATACCCT
Found at i:77988106 original size:25 final size:25
Alignment explanation
Indices: 77988072--77988124 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
77988062 AGGCAAAACC
77988072 ATTATATTGTTTATGTTGTTAAATA
1 ATTATATTGTTTATGTTGTTAAATA
77988097 ATTATATTGTTTATGTTGTTAAATA
1 ATTATATTGTTTATGTTGTTAAATA
77988122 ATT
1 ATT
77988125 TTATACTTCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (25 bp):
ATTATATTGTTTATGTTGTTAAATA
Found at i:78000932 original size:24 final size:24
Alignment explanation
Indices: 78000905--78000985 Score: 63
Period size: 26 Copynumber: 3.2 Consensus size: 24
78000895 TACAATGCCA
78000905 TATCCCAGATATGGTCTTACATGT
1 TATCCCAGATATGGTCTTACATGT
* * * * * *
78000929 TATCACATACATAAAGCTCATACAATGCA
1 TATC-C-CAGAT-ATGGTCTTAC-ATG-T
78000958 TATCCCAGATATGGTCTTACATGT
1 TATCCCAGATATGGTCTTACATGT
78000982 TATC
1 TATC
78000986 ACATATTGAT
Statistics
Matches: 40, Mismatches: 12, Indels: 10
0.65 0.19 0.16
Matches are distributed among these distances:
24 8 0.20
25 4 0.10
26 10 0.25
27 10 0.25
28 4 0.10
29 4 0.10
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.33
Consensus pattern (24 bp):
TATCCCAGATATGGTCTTACATGT
Found at i:78000976 original size:53 final size:54
Alignment explanation
Indices: 78000882--78000990 Score: 211
Period size: 53 Copynumber: 2.0 Consensus size: 54
78000872 ACTCGAAAAT
78000882 TACATAAAGCTCATACAATGCCATATCCCAGATATGGTCTTACATGTTATCACA
1 TACATAAAGCTCATACAATGCCATATCCCAGATATGGTCTTACATGTTATCACA
78000936 TACATAAAGCTCATACAATG-CATATCCCAGATATGGTCTTACATGTTATCACA
1 TACATAAAGCTCATACAATGCCATATCCCAGATATGGTCTTACATGTTATCACA
78000989 TA
1 TA
78000991 TTGATGCCAT
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
53 35 0.64
54 20 0.36
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.30
Consensus pattern (54 bp):
TACATAAAGCTCATACAATGCCATATCCCAGATATGGTCTTACATGTTATCACA
Found at i:78011471 original size:56 final size:56
Alignment explanation
Indices: 78011390--78011522 Score: 185
Period size: 56 Copynumber: 2.4 Consensus size: 56
78011380 AGGCAGGGTT
* * *
78011390 TTACTCGCACACATAAATCGAAATCACATATCAATGCCAACGTATTAAACATGGTC
1 TTACTCGCACACATATATCGAAATCAAATATCAATGCCAACATATTAAACATGGTC
* * * * * *
78011446 TTACTTGCACACATATATTGGAATCAAATATCGATGCCAGCATATTAAACGTGGTC
1 TTACTCGCACACATATATCGAAATCAAATATCAATGCCAACATATTAAACATGGTC
78011502 TTACTCGCACACATATATCGA
1 TTACTCGCACACATATATCGA
78011523 TGCCATGGTC
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
56 65 1.00
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (56 bp):
TTACTCGCACACATATATCGAAATCAAATATCAATGCCAACATATTAAACATGGTC
Found at i:78012673 original size:21 final size:20
Alignment explanation
Indices: 78012649--78012687 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
78012639 TTTATCAGTA
*
78012649 ATTCCATTTCATTTATATTAT
1 ATTCCATATCA-TTATATTAT
*
78012670 ATTCTATATCATTATATT
1 ATTCCATATCATTATATT
78012688 TTTAAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.31, C:0.13, G:0.00, T:0.56
Consensus pattern (20 bp):
ATTCCATATCATTATATTAT
Found at i:78013409 original size:5 final size:5
Alignment explanation
Indices: 78013401--78013452 Score: 52
Period size: 5 Copynumber: 10.2 Consensus size: 5
78013391 TGAAATTTTC
* * *
78013401 TCGAA TCGAG TCGAG T-GAGA TGGAA TTCGAA TCGAA TCGAA TCGAA TCGAA
1 TCGAA TCGAA TCGAA TCGA-A TCGAA T-CGAA TCGAA TCGAA TCGAA TCGAA
78013452 T
1 T
78013453 ATATTTATTC
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
4 2 0.05
5 33 0.80
6 6 0.15
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:78013452 original size:26 final size:26
Alignment explanation
Indices: 78013401--78013452 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
78013391 TGAAATTTTC
* * *
78013401 TCGAATCGAGTCGAGTGAGATGGAAT
1 TCGAATCGAATCGAATGAGATCGAAT
78013427 TCGAATCGAATCGAATCGA-ATCGAAT
1 TCGAATCGAATCGAAT-GAGATCGAAT
78013453 ATATTTATTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (26 bp):
TCGAATCGAATCGAATGAGATCGAAT
Found at i:78014384 original size:9 final size:9
Alignment explanation
Indices: 78014366--78014402 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
78014356 TATAGTTTGA
78014366 TATTCGAAT
1 TATTCGAAT
*
78014375 TATTCAAAT
1 TATTCGAAT
*
78014384 TATTCGAGT
1 TATTCGAAT
78014393 TATTCGAAT
1 TATTCGAAT
78014402 T
1 T
78014403 CAAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:78022270 original size:87 final size:87
Alignment explanation
Indices: 78022153--78022315 Score: 281
Period size: 87 Copynumber: 1.9 Consensus size: 87
78022143 CATAAGTGAA
* *
78022153 CTCAGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGAACTCAACTCAACGA
1 CTCAAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAACGA
78022218 GCTCGGATGCCTGGTTACATCT
66 GCTCGGATGCCTGGTTACATCT
* *
78022240 CTCAAACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAACGA
1 CTCAAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAACGA
*
78022305 GTTCGGATGCC
66 GCTCGGATGCC
78022316 CAAATATCCT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 71 1.00
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.22
Consensus pattern (87 bp):
CTCAAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAACGA
GCTCGGATGCCTGGTTACATCT
Found at i:78022311 original size:46 final size:46
Alignment explanation
Indices: 78022142--78022311 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 46
78022132 TGTAACCCGC
*
78022142 CCATAAGTGAACTC-AGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGA-ACTCAACTCAACGAGCTCGGACATTCGCAT
*
78022188 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGG--A-T-GCCT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCAT
*** ** * * *
78022230 GGTTACA-T-CTCTCAAACTCAACTCAATGAGTTCGGACATTCGCAT
1 CCATA-AGTGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCAT
*
78022275 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGA
78022312 TGCCCAAATA
Statistics
Matches: 99, Mismatches: 17, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
41 22 0.22
42 6 0.06
43 3 0.03
44 3 0.03
45 6 0.06
46 58 0.59
47 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:78027965 original size:34 final size:34
Alignment explanation
Indices: 78027886--78027951 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
78027876 TTTGATACTG
* *
78027886 TACTG-AATTGGGCTAAGGCCTACACTGTTATTAC
1 TACTGTAA-TGGGCTAAGGCCCACACTGATATTAC
78027920 TACTGTAATGGGCTAAGGCCCACACTGATATT
1 TACTGTAATGGGCTAAGGCCCACACTGATATT
78027952 GCTATTGATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 27 0.93
35 2 0.07
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (34 bp):
TACTGTAATGGGCTAAGGCCCACACTGATATTAC
Found at i:78030957 original size:54 final size:54
Alignment explanation
Indices: 78030789--78030972 Score: 221
Period size: 55 Copynumber: 3.4 Consensus size: 54
78030779 CATGTCTTAA
* * *
78030789 CATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTTGG
1 CATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
* * * *
78030842 CATGGTCTTACATGGGACAT--TTGCGTTATAGTAACTCATCAATGCCATGTCTTGA
1 CATGGTCTTACAT--GATATCCTTGCCTTATAG-AACTCATCAATGCCATGCCTTGG
* * * *
78030897 CATGGTCTTATATGATTTCCTTGCCTTATAGAACTTATTAATGCCATGCCTTGG
1 CATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
78030951 CATGGTCTTACATGATATCCTT
1 CATGGTCTTACATGATATCCTT
78030973 ATCTTACCAA
Statistics
Matches: 108, Mismatches: 17, Indels: 11
0.79 0.12 0.08
Matches are distributed among these distances:
53 23 0.21
54 40 0.37
55 45 0.42
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.36
Consensus pattern (54 bp):
CATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
Found at i:78036947 original size:46 final size:46
Alignment explanation
Indices: 78036879--78037004 Score: 159
Period size: 46 Copynumber: 2.7 Consensus size: 46
78036869 GTGGTATGTG
*
78036879 AGCCAGTGTAAGACATGTCTGGGACATGCATCGATCACATCATGA-GT
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGAGCA-ATCA-GACGT
* *
78036926 -GCCAGTGTAAGACATGTCTGGGACATGCATC-AGCATTGAGACGT
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGAGCAATCAGACGT
* *
78036970 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGA
1 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGA
78037005 CCTCAGGATA
Statistics
Matches: 70, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
43 2 0.03
44 4 0.06
45 3 0.04
46 60 0.86
47 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGAGCAATCAGACGT
Found at i:78037071 original size:92 final size:94
Alignment explanation
Indices: 78036876--78037142 Score: 275
Period size: 92 Copynumber: 2.9 Consensus size: 94
78036866 TGGGTGGTAT
* * *
78036876 GTGAGCCAGTGTAAGACATGTCTGGGACATGCATCGA--TCACATCAT-GAGTGCCAGTGTAAGA
1 GTGAG-CAGTGTAAGACATGTCTGGGACATGCATCGACCTCAGAT-ATAGAGAGCTAGTGTAAGA
*
78036938 CATGTCTGGGACAT-GCATCAGCATTGAGAC
64 CCTGTCTGGGACATGGCATCAGCATTGAGAC
*
78036968 GTGAGCTAGTGTAAGACATGTCTAGGACATGCATCGACCTCAGGATATAGA-AGCTAGTGTAAGA
1 GTGAGC-AGTGTAAGACATGTCTGGGACATGCATCGACCTCA-GATATAGAGAGCTAGTGTAAGA
* * * *
78037032 CCTGTCTAGGACATGGCGTCAGC-TTGTTG-T
64 CCTGTCTGGGACATGGCATCAGCATTG-AGAC
* * * *
78037062 GTG-TCAGTGTAAGACCTGTCTGGGACATGGCATCGACAC-C-GATAGATGAGAGCTAGTTTAAG
1 GTGAGCAGTGTAAGACATGTCTGGGACAT-GCATCGAC-CTCAGATATA-GAGAGCTAGTGTAAG
78037124 ACCTGTCTGGGACATGGCA
63 ACCTGTCTGGGACATGGCA
78037143 CTGGCCTTGA
Statistics
Matches: 148, Mismatches: 16, Indels: 21
0.80 0.09 0.11
Matches are distributed among these distances:
91 6 0.04
92 57 0.39
93 38 0.26
94 35 0.24
95 12 0.08
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (94 bp):
GTGAGCAGTGTAAGACATGTCTGGGACATGCATCGACCTCAGATATAGAGAGCTAGTGTAAGACC
TGTCTGGGACATGGCATCAGCATTGAGAC
Found at i:78037173 original size:49 final size:49
Alignment explanation
Indices: 78037064--78037186 Score: 126
Period size: 49 Copynumber: 2.5 Consensus size: 49
78037054 CTTGTTGTGT
*
78037064 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAAA
* * * *
78037113 G-CTAGTTTAAGACCTGTCTGGGACATGGCA-CTGGC-CTTGATATATGAAA
1 GTC-AGTGTAAGACCTGTCTGGGACATGGCATC-GACAC-CGATAGATGAAA
* * *
78037162 GTCAATGTAAGATCTTTCTGGGACA
1 GTCAGTGTAAGACCTGTCTGGGACA
78037187 CAACATCGAC
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
48 3 0.05
49 57 0.93
50 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAAA
Found at i:78045821 original size:71 final size:71
Alignment explanation
Indices: 78045733--78045896 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
78045723 GAGATGTATC
78045733 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
78045798 AGGACA
66 AGGACA
*
78045804 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
78045869 CGGACA
66 AGGACA
78045875 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
78045897 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:78053422 original size:70 final size:71
Alignment explanation
Indices: 78053271--78053433 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
78053261 GAGATGTATC
78053271 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
78053336 AGGACA
66 AGGACA
78053342 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
78053406 CGGACA
66 AGGACA
78053412 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
78053434 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:78057395 original size:26 final size:26
Alignment explanation
Indices: 78057359--78057413 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
78057349 AACACAACAA
78057359 TATCGTAGCAAGGCT-GCTAGTAGTAG
1 TATCGTAGCAAGGCTAGC-AGTAGTAG
*
78057385 TATCGTAGCAAGGCTAGCAGTATTAG
1 TATCGTAGCAAGGCTAGCAGTAGTAG
78057411 TAT
1 TAT
78057414 ATGTGGCAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (26 bp):
TATCGTAGCAAGGCTAGCAGTAGTAG
Found at i:78061287 original size:49 final size:47
Alignment explanation
Indices: 78061227--78061337 Score: 150
Period size: 49 Copynumber: 2.3 Consensus size: 47
78061217 GTATGAGATA
* *
78061227 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCAACGTGATGAATGTGAAA--GTG
* * *
78061276 TATATATGTGATAAGGCCTAGTGGCCAACGTGATGGATGTGGAAGTG
1 TATATATGTGATAAGGCCTAATGGCCAACGTGATGAATGTGAAAGTG
*
78061323 TATAAATGTGATAAG
1 TATATATGTGATAAG
78061338 TCCCGAAGGG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
47 17 0.30
49 39 0.70
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCAACGTGATGAATGTGAAAGTG
Found at i:78069493 original size:28 final size:28
Alignment explanation
Indices: 78069428--78069528 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
78069418 ATAGTGAATC
*
78069428 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
78069457 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
78069485 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
78069515 CGCACACTTAGTGC
1 CGCACACTTAGTGC
78069529 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:78077446 original size:28 final size:28
Alignment explanation
Indices: 78077381--78077481 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
78077371 ATAGTGAATC
*
78077381 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
78077410 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
78077438 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
78077468 CGCACACTTAGTGC
1 CGCACACTTAGTGC
78077482 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:78082286 original size:39 final size:39
Alignment explanation
Indices: 78082243--78082541 Score: 447
Period size: 39 Copynumber: 7.5 Consensus size: 39
78082233 GTGAATAAAT
*
78082243 AGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGC
1 AGGCTTCGTGCTGGAAATATATCCGGGCTAAAGTCCCGC
*
78082282 AGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGC
1 AGGCTTCGTGCTGGAAATATATCCGGGCTAAAGTCCCGC
78082321 AGGCTTCGTGCTGGAAATATATCCGGGCTAAAGTCCCGC
1 AGGCTTCGTGCTGGAAATATATCCGGGCTAAAGTCCCGC
78082360 AGGCTTCGTGCTGGGCTGGAAATATATCCGGGCTAAAGTCCCGC
1 AGGCTTC--G-T--GCTGGAAATATATCCGGGCTAAAGTCCCGC
*
78082404 AGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGC
1 AGGCTTCGTGCTGGAAATATATCCGGGCTAAAGTCCCGC
* * *
78082443 AGGCTTCATGCTGGAAATGTATCCGGGCCAAAGTCCCGC
1 AGGCTTCGTGCTGGAAATATATCCGGGCTAAAGTCCCGC
* * *
78082482 AGGCTTCGTGCTGGAAATGTATCCGGGTTAAAGTCCCGT
1 AGGCTTCGTGCTGGAAATATATCCGGGCTAAAGTCCCGC
*
78082521 AGGCTTTGTGCT-GATAATATA
1 AGGCTTCGTGCTGGA-AATATA
78082542 ATTTCGGGTT
Statistics
Matches: 242, Mismatches: 12, Indels: 12
0.91 0.05 0.05
Matches are distributed among these distances:
38 2 0.01
39 199 0.82
41 2 0.01
42 2 0.01
44 37 0.15
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (39 bp):
AGGCTTCGTGCTGGAAATATATCCGGGCTAAAGTCCCGC
Found at i:78082469 original size:122 final size:117
Alignment explanation
Indices: 78082243--78082541 Score: 447
Period size: 122 Copynumber: 2.5 Consensus size: 117
78082233 GTGAATAAAT
* *
78082243 AGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGG
1 AGGCTTCGTGCTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGG
* * *
78082308 GCTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCTAAAGTCCCGC
66 GCCAAAGTCCCGCAGGCTTCATGCTGGAAATATATCCGGGCCAAAGTCCCGC
78082360 AGGCTTCGTGCTGGGCTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATATA
1 AGGCTTC--G-T--GCTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATATA
*
78082425 TCCGGGCCAAAGTCCCGCAGGCTTCATGCTGGAAATGTATCCGGGCCAAAGTCCCGC
61 TCCGGGCCAAAGTCCCGCAGGCTTCATGCTGGAAATATATCCGGGCCAAAGTCCCGC
* * * *
78082482 AGGCTTCGTGCTGGAAATGTATCCGGGTTAAAGTCCCGTAGGCTTTGTGCT-GATAATATA
1 AGGCTTCGTGCTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGA-AATATA
78082542 ATTTCGGGTT
Statistics
Matches: 166, Mismatches: 10, Indels: 12
0.88 0.05 0.06
Matches are distributed among these distances:
116 2 0.01
117 51 0.31
119 2 0.01
120 2 0.01
122 109 0.66
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (117 bp):
AGGCTTCGTGCTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGG
GCCAAAGTCCCGCAGGCTTCATGCTGGAAATATATCCGGGCCAAAGTCCCGC
Found at i:78082508 original size:161 final size:161
Alignment explanation
Indices: 78082243--78082533 Score: 528
Period size: 161 Copynumber: 1.8 Consensus size: 161
78082233 GTGAATAAAT
*
78082243 AGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGG
1 AGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCATGCTGGAAATGTATCCGG
*
78082308 GCTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
66 GCCAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
78082373 GGCTGGAAATATATCCGGGCTAAAGTCCCGC
131 GGCTGGAAATATATCCGGGCTAAAGTCCCGC
78082404 AGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCATGCTGGAAATGTATCCGG
1 AGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCATGCTGGAAATGTATCCGG
* * * *
78082469 GCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGTTAAAGTCCCGTAGGCTTTGTGCTG
66 GCCAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
78082534 ATAATATAAT
Statistics
Matches: 124, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
161 124 1.00
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.23
Consensus pattern (161 bp):
AGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCATGCTGGAAATGTATCCGG
GCCAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
GGCTGGAAATATATCCGGGCTAAAGTCCCGC
Found at i:78084467 original size:20 final size:20
Alignment explanation
Indices: 78084430--78084468 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
78084420 ATTGTTTTTC
*
78084430 TTGAATGATGAGAAATTATG
1 TTGAATGATAAGAAATTATG
78084450 TTGAATGA-AAGAATATTAT
1 TTGAATGATAAGAA-ATTAT
78084469 CTATGGCTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.44, C:0.00, G:0.21, T:0.36
Consensus pattern (20 bp):
TTGAATGATAAGAAATTATG
Found at i:78086650 original size:50 final size:50
Alignment explanation
Indices: 78086464--78086849 Score: 434
Period size: 50 Copynumber: 7.7 Consensus size: 50
78086454 TAAAATGGTT
* *
78086464 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTGCCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGG
* * * *
78086514 TTAGGTTA--TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GG
* * *
78086563 TTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGG
* * * * *
78086613 TTAGGCCATGTGTGTAGTACCAAGTGCAGGCTGCTACGTGTATCAGATGG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGG
* * ** * *
78086663 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTATTATGCATACCCGATAGC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GG
* * ** * * *
78086714 TTTGATCACGTGTGTAGTACTAAGTATAGACTACTACATGTATCAGATGG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGG
* * * * *
78086764 TTAGGTCACATGTGTAGCACTAAGTGCAGGATACTATGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGG
* *
78086814 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
78086850 TGCATACCAG
Statistics
Matches: 274, Mismatches: 58, Indels: 8
0.81 0.17 0.02
Matches are distributed among these distances:
48 35 0.13
49 5 0.02
50 162 0.59
51 72 0.26
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGG
Found at i:78086713 original size:151 final size:150
Alignment explanation
Indices: 78086464--78086868 Score: 578
Period size: 151 Copynumber: 2.7 Consensus size: 150
78086454 TAAAATGGTT
* *
78086464 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTGCCAGATTGTTAGGTTA-TGTGTA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACTGTGTA
** * *
78086528 GTACTAAGTGCAGGCTACTATGTGTACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAGG
66 GTACTAAGTGCAGGCTACTATGCATACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTACAGA
*
78086593 CTACTACGTGTATCAGATGG
131 CTACTACATGTATCAGATGG
* * * * * *
78086613 TTAGGCCATGTGTGTAGTACCAAGTGCAGGCTGCTACGTGTATCAGATGGTTAGGTCACGTGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC-TGTGT
* * *
78086678 AGTACTAAGTGCAGGCTATTATGCATACCCGATAGCTTTGATCACGTGTGTAGTACTAAGTATAG
65 AGTACTAAGTGCAGGCTACTATGCATACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTACAG
78086743 ACTACTACATGTATCAGATGG
130 ACTACTACATGTATCAGATGG
* * * * *
78086764 TTAGGTCACATGTGTAGCACTAAGTGCAGGATACTATGTGTACCAGATTGTTAGGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC-TGTGT
* *
78086829 AGTACTAAGTGCAGGCTACTATGCATACCAGAGAGCTTCG
65 AGTACTAAGTGCAGGCTACTATGCATACCCGATAGCTTCG
78086869 GTTATAAGGG
Statistics
Matches: 222, Mismatches: 32, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
149 50 0.23
151 172 0.77
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (150 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACTGTGTA
GTACTAAGTGCAGGCTACTATGCATACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTACAGA
CTACTACATGTATCAGATGG
Found at i:78086727 original size:101 final size:98
Alignment explanation
Indices: 78086464--78086849 Score: 425
Period size: 101 Copynumber: 3.9 Consensus size: 98
78086454 TAAAATGGTT
* *
78086464 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTGCCAGATTGTTAGGTTA-TGTGTA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TGTTAGGTCAGTGTGTA
* * * *
78086528 GTACTAAGTGCAGGCTACTATGTGTACCCGATAGC
65 GTACTAAGTGCAGGCTACTACGTGTATCAGAT-GG
* * * *
78086563 TTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGCCATGTGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GTTAGGTCA-GTGTGT
* *
78086628 AGTACCAAGTGCAGGCTGCTACGTGTATCAGATGG
64 AGTACTAAGTGCAGGCTACTACGTGTATCAGATGG
* * ** * * *
78086663 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTATTATGCATACCCGATAGCTTTGATCACGTGTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-G-TTAGGTCA-GTGTG
** * *
78086728 TAGTACTAAGTATAGACTACTACATGTATCAGATGG
63 TAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG
* * * *
78086764 TTAGGTCACATGTGTAGCACTAAGTGCAGGATACTATGTGTACCAGATTGTTAGGTC-GCATGTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TGTTAGGTCAG--TGTG
78086828 TAGTACTAAGTGCAGGCTACTA
63 TAGTACTAAGTGCAGGCTACTA
78086850 TGCATACCAG
Statistics
Matches: 237, Mismatches: 43, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
98 2 0.01
99 50 0.21
100 70 0.30
101 114 0.48
102 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (98 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGTTAGGTCAGTGTGTAG
TACTAAGTGCAGGCTACTACGTGTATCAGATGG
Found at i:78089192 original size:13 final size:14
Alignment explanation
Indices: 78089166--78089198 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
78089156 ATAAAATATA
78089166 AATTTATATTTAAT
1 AATTTATATTTAAT
78089180 AATTTAT-TTTAAT
1 AATTTATATTTAAT
78089193 ATATTT
1 A-ATTT
78089199 CATTAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
AATTTATATTTAAT
Found at i:78099274 original size:43 final size:42
Alignment explanation
Indices: 78099227--78099385 Score: 126
Period size: 43 Copynumber: 3.7 Consensus size: 42
78099217 AGAACATATA
*
78099227 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAACAT
1 CAATGCCAATATCCCAGACATGGTCTTACATGTAATCAAA-AT
* * * * *
78099270 CAATGCCACTATCCCAGACAGGGTCTTACAAGAAATCAGATAT
1 CAATGCCAATATCCCAGACATGGTCTTACATGTAATCA-AAAT
* * * * *
78099313 GATAT--CGATGTCCTAGACATGGTCTTACATGTAAAAT-AGAAGT
1 CA-ATGCCAATATCCCAGACATGGTCTTACATGT--AATCA-AAAT
* *
78099356 CAATGCCAACATCCCAGACGTGGTCTTACA
1 CAATGCCAATATCCCAGACATGGTCTTACA
78099386 CGAAATCCTA
Statistics
Matches: 88, Mismatches: 22, Indels: 11
0.73 0.18 0.09
Matches are distributed among these distances:
42 22 0.25
43 41 0.47
44 25 0.28
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.25
Consensus pattern (42 bp):
CAATGCCAATATCCCAGACATGGTCTTACATGTAATCAAAAT
Found at i:78099384 original size:86 final size:85
Alignment explanation
Indices: 78099235--78099392 Score: 216
Period size: 86 Copynumber: 1.8 Consensus size: 85
78099225 TACAATGCCA
78099235 ATGTCCCAGACATGGTCTTACATGTAATCAAACATCAATGCCACTATCCCAGACAGGGTCTTACA
1 ATGTCCCAGACATGGTCTTACATGTAATCAAACATCAATGCCACTATCCCAGACAGGGTCTTACA
78099300 AGAAATCAGATATGATATCG
66 AGAAATCAGATATGATATCG
* *
78099320 ATGTCCTAGACATGGTCTTACATGTAAAAT-AGAA-GTCAATGCCAAC-ATCCCAGAC-GTGGTC
1 ATGTCCCAGACATGGTCTTACATGT--AATCA-AACATCAATGCC-ACTATCCCAGACAG-GGTC
*
78099381 TTACACGAAATC
61 TTACAAGAAATC
78099393 CTATGTCATG
Statistics
Matches: 65, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
85 25 0.38
86 33 0.51
87 7 0.11
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (85 bp):
ATGTCCCAGACATGGTCTTACATGTAATCAAACATCAATGCCACTATCCCAGACAGGGTCTTACA
AGAAATCAGATATGATATCG
Found at i:78102201 original size:29 final size:29
Alignment explanation
Indices: 78102139--78102241 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
78102129 GTGACGAGAT
* * *
78102139 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
78102168 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
78102197 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
78102226 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
78102242 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:78110193 original size:29 final size:29
Alignment explanation
Indices: 78110131--78110233 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
78110121 GTGACGAGAT
* * *
78110131 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
78110160 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
78110189 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
78110218 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
78110234 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:78116138 original size:23 final size:22
Alignment explanation
Indices: 78116108--78116178 Score: 106
Period size: 23 Copynumber: 3.1 Consensus size: 22
78116098 TCATTTGTTG
78116108 TAGCTCGAAACTCTTCAGCCCCA
1 TAGCTCGAAACTCTTC-GCCCCA
78116131 TAGCTCGAAACTCTTCGGCCCCA
1 TAGCTCGAAACTCTTC-GCCCCA
*
78116154 TAGCTCAAAACTCTTCGACCCCA
1 TAGCTCGAAACTCTTCG-CCCCA
78116177 TA
1 TA
78116179 CTTTCTAATC
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
22 1 0.02
23 44 0.98
ACGTcount: A:0.27, C:0.38, G:0.13, T:0.23
Consensus pattern (22 bp):
TAGCTCGAAACTCTTCGCCCCA
Found at i:78118058 original size:42 final size:42
Alignment explanation
Indices: 78117958--78118070 Score: 140
Period size: 43 Copynumber: 2.6 Consensus size: 42
78117948 AACGTATAGA
* *
78117958 ATGCCAATGTCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ATGTCCCAGACAG-GGTCTTATATGAAATCAAATATCG
*
78118001 ATGCCACTGTCCCAGACAGGGTCTTATATGAAATCAGATA-CG
1 ATGCCA-TGTCCCAGACAGGGTCTTATATGAAATCAAATATCG
*
78118043 ATGCCGATGTCCCAGACATGGTCTTATA
1 ATGCC-ATGTCCCAGACAGGGTCTTATA
78118071 CGTAAAATAG
Statistics
Matches: 63, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
42 28 0.44
43 34 0.54
44 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (42 bp):
ATGCCATGTCCCAGACAGGGTCTTATATGAAATCAAATATCG
Found at i:78121103 original size:12 final size:12
Alignment explanation
Indices: 78121084--78121125 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
78121074 TCCTACACGT
78121084 CCGTGTGCTAGA
1 CCGTGTGCTAGA
* *
78121096 CTGTGTGCTAGG
1 CCGTGTGCTAGA
*
78121108 CCGTGTGCTAGG
1 CCGTGTGCTAGA
78121120 CCGTGT
1 CCGTGT
78121126 AACTCACTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.10, C:0.24, G:0.38, T:0.29
Consensus pattern (12 bp):
CCGTGTGCTAGA
Found at i:78121697 original size:40 final size:39
Alignment explanation
Indices: 78121630--78121732 Score: 107
Period size: 39 Copynumber: 2.6 Consensus size: 39
78121620 TATTTGATTC
* *
78121630 AGGGTTACCAAAGTACAAACAGTGGCACATATGTAAACTT
1 AGGGGTACCAAAGTACAAACAGGGGCACA-ATGTAAACTT
* * * ** *
78121670 AGGGGTACTAAAGTATAAATAGGGGCACAATGTGTATTT
1 AGGGGTACCAAAGTACAAACAGGGGCACAATGTAAACTT
* *
78121709 AGGGGTACCGAAGTAGAAACAGGG
1 AGGGGTACCAAAGTACAAACAGGG
78121733 ACACGCATGT
Statistics
Matches: 51, Mismatches: 12, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
39 27 0.53
40 24 0.47
ACGTcount: A:0.38, C:0.13, G:0.28, T:0.21
Consensus pattern (39 bp):
AGGGGTACCAAAGTACAAACAGGGGCACAATGTAAACTT
Found at i:78121755 original size:40 final size:40
Alignment explanation
Indices: 78121626--78121869 Score: 170
Period size: 40 Copynumber: 6.1 Consensus size: 40
78121616 ATATTATTTG
* * * **
78121626 ATTC-AGGGTTACCAAAGTACAAACAGTGGCACATATGTAA
1 ATTCAAGGG-TACCGAAGTACAAACAGGGGCACGTATGTGC
* ** * * * *
78121666 ACTT-AGGGGTACTAAAGTATAAATAGGGGCAC-AATGTGT
1 A-TTCAAGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
* * * * *
78121705 ATTTAGGGGTACCGAAGTAGAAACAGGGACACGCATGTGC
1 ATTCAAGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
* * * *
78121745 ATTCAAGGGTATCGAAGTACAAATAGGGGTACGTAGGTGC
1 ATTCAAGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
* * * * * *
78121785 ATTTAGGGGTACAGAAGTACAAACAGGGGCACATATATGT
1 ATTCAAGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
* **
78121825 ATTCAAGGGTACTGAAGTACAAACAGGGGCATATATGTGC
1 ATTCAAGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
*
78121865 TTTCA
1 ATTCA
78121870 TACAATAATT
Statistics
Matches: 159, Mismatches: 41, Indels: 8
0.76 0.20 0.04
Matches are distributed among these distances:
38 2 0.01
39 28 0.18
40 124 0.78
41 5 0.03
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.23
Consensus pattern (40 bp):
ATTCAAGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
Found at i:78121809 original size:80 final size:80
Alignment explanation
Indices: 78121705--78121853 Score: 210
Period size: 80 Copynumber: 1.9 Consensus size: 80
78121695 CACAATGTGT
* * * * *
78121705 ATTTAGGGGTACCGAAGTAGAAACAGGGACACGCATGTGCATTCAAGGGTA-TCGAAGTACAAAT
1 ATTTAGGGGTACAGAAGTACAAACAGGGACACACATATGCATTCAAGGGTACT-GAAGTACAAAC
78121769 AGGGGTACGTAGGTGC
65 AGGGGTACGTAGGTGC
* * *
78121785 ATTTAGGGGTACAGAAGTACAAACAGGGGCACATATATGTATTCAAGGGTACTGAAGTACAAACA
1 ATTTAGGGGTACAGAAGTACAAACAGGGACACACATATGCATTCAAGGGTACTGAAGTACAAACA
78121850 GGGG
66 GGGG
78121854 CATATATGTG
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
80 59 0.98
81 1 0.02
ACGTcount: A:0.35, C:0.14, G:0.31, T:0.20
Consensus pattern (80 bp):
ATTTAGGGGTACAGAAGTACAAACAGGGACACACATATGCATTCAAGGGTACTGAAGTACAAACA
GGGGTACGTAGGTGC
Found at i:78127006 original size:27 final size:27
Alignment explanation
Indices: 78126976--78127067 Score: 139
Period size: 27 Copynumber: 3.4 Consensus size: 27
78126966 ATTACCAAAG
* * *
78126976 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
78127003 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
78127030 TACCCTCAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
78127057 TACCCTCGATT
1 TACCCTCGATT
78127068 GTGAAATTAC
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:78127021 original size:54 final size:54
Alignment explanation
Indices: 78126949--78127067 Score: 148
Period size: 54 Copynumber: 2.2 Consensus size: 54
78126939 ATTACTGAAA
* ** * * * *
78126949 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTT
***
78127003 TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTT
78127057 TACCCTCGATT
1 TACCCTCGATT
78127068 GTGAAATTAC
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTT
Found at i:78127175 original size:27 final size:27
Alignment explanation
Indices: 78127066--78127195 Score: 104
Period size: 27 Copynumber: 4.8 Consensus size: 27
78127056 TTACCCTCGA
* *
78127066 TTGTGAAATTACTAAAATACCCCTG-T
1 TTGTAAAATTACCAAAATACCCCTGAT
** * * *
78127092 AGGATAGAATTACCAAAATACCACTGGT
1 TTG-TAAAATTACCAAAATACCCCTGAT
* *
78127120 TTG-AGAAATTACCGAAATA-CCCTCAAT
1 TTGTA-AAATTACCAAAATACCCCT-GAT
78127147 TTGTAAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCAAAATACCCCTGAT
** *
78127174 TTACAAAATTACAAAAATACCC
1 TTGTAAAATTACCAAAATACCC
78127196 TTGACTTTTT
Statistics
Matches: 80, Mismatches: 18, Indels: 11
0.73 0.17 0.10
Matches are distributed among these distances:
26 5 0.06
27 68 0.85
28 7 0.09
ACGTcount: A:0.42, C:0.21, G:0.10, T:0.27
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTGAT
Found at i:78127343 original size:27 final size:27
Alignment explanation
Indices: 78127300--78127373 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
78127290 AAATGACTAA
*
78127300 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
78127327 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
78127354 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
78127374 TGATGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:78129807 original size:27 final size:27
Alignment explanation
Indices: 78129789--78129958 Score: 250
Period size: 27 Copynumber: 6.3 Consensus size: 27
78129779 GGTAAAACAT
*
78129789 TCATTTTACCAAATAAGGGCAAAATAG
1 TCATTTTACCAAATAAGGGAAAAATAG
* *
78129816 TCATTTTACCATATAAGGGCAAAATAG
1 TCATTTTACCAAATAAGGGAAAAATAG
*
78129843 TCATTTTACCATATAAGGGAAAAATAG
1 TCATTTTACCAAATAAGGGAAAAATAG
*
78129870 TCATTTTACCACATAAGGGAAAAATAG
1 TCATTTTACCAAATAAGGGAAAAATAG
* *
78129897 TCATTTTACCAAATAATGGAAAAACAG
1 TCATTTTACCAAATAAGGGAAAAATAG
* * *
78129924 TCATTTTACCACATAAGGGCAAAATGG
1 TCATTTTACCAAATAAGGGAAAAATAG
78129951 TCATTTTA
1 TCATTTTA
78129959 TCAATTAGGG
Statistics
Matches: 132, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 132 1.00
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (27 bp):
TCATTTTACCAAATAAGGGAAAAATAG
Found at i:78129853 original size:54 final size:54
Alignment explanation
Indices: 78129772--78129958 Score: 277
Period size: 54 Copynumber: 3.5 Consensus size: 54
78129762 ATATATACAT
* * * *
78129772 CACAT-AGGGTAAAACATTCATTTTACCAAATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTACCAAATAAGGGAAAAATAGTCATTTTAC
* *
78129825 CATATAAGGGCAAAATAGTCATTTTACCATATAAGGGAAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTACCAAATAAGGGAAAAATAGTCATTTTAC
* * *
78129879 CACATAAGGGAAAAATAGTCATTTTACCAAATAATGGAAAAACAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTACCAAATAAGGGAAAAATAGTCATTTTAC
*
78129933 CACATAAGGGCAAAATGGTCATTTTA
1 CACATAAGGGCAAAATAGTCATTTTA
78129959 TCAATTAGGG
Statistics
Matches: 120, Mismatches: 13, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
53 4 0.03
54 116 0.97
ACGTcount: A:0.43, C:0.15, G:0.14, T:0.28
Consensus pattern (54 bp):
CACATAAGGGCAAAATAGTCATTTTACCAAATAAGGGAAAAATAGTCATTTTAC
Found at i:78131442 original size:93 final size:93
Alignment explanation
Indices: 78131283--78131453 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
78131273 GCCCATAAGC
* * *
78131283 GAACTCAGACTCAACTCAACAAGCTTGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
78131348 CGAGTTCGGATGCCTAGTTACATCTCAA
66 CGAGTTCGGATGCCTAGTTACATCTCAA
* * *
78131376 GAACTCGGACTCAACTCAACGAG-TTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACAAGCTT-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
78131440 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
78131454 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACAAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAA
Found at i:78131450 original size:46 final size:46
Alignment explanation
Indices: 78131275--78131450 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
78131265 TGGAACCCGC
* * * * * *
78131275 CCATAAGCGAACTCAGACTCAACTCAACAAGCTT-GGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTTGCAT
* * *
78131321 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
78131371 -C-TCAA--GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCAT-AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
78131414 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
78131451 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
43 6 0.06
44 4 0.04
45 3 0.03
46 58 0.54
47 29 0.27
48 1 0.01
49 3 0.03
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:78131469 original size:46 final size:45
Alignment explanation
Indices: 78131326--78131469 Score: 136
Period size: 46 Copynumber: 3.1 Consensus size: 45
78131316 CGCATCCATG
78131326 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT
* * * *
78131373 CA-AGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCT
78131419 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CT
78131465 AGTGA
1 AGTGA
78131470 CATGTCACTT
Statistics
Matches: 79, Mismatches: 8, Indels: 20
0.74 0.07 0.19
Matches are distributed among these distances:
44 8 0.10
45 2 0.03
46 33 0.42
47 31 0.39
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCT
Found at i:78133294 original size:40 final size:40
Alignment explanation
Indices: 78133229--78133378 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
78133219 AAATTGAATG
* * *
78133229 ATATCCGGGCTAAG--CCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
78133267 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
78133307 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
78133347 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
78133379 ACGTGATTAA
Statistics
Matches: 90, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
38 13 0.14
39 3 0.03
40 72 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:78143194 original size:40 final size:40
Alignment explanation
Indices: 78143149--78143315 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
78143139 CGGAATATAA
78143149 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
78143189 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
78143229 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
78143269 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
78143308 CCGGATAT
1 CCGGATAT
78143316 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:78151154 original size:40 final size:40
Alignment explanation
Indices: 78151109--78151275 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
78151099 CGGAATATAA
78151109 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
78151149 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
78151189 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
78151229 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
78151268 CCGGATAT
1 CCGGATAT
78151276 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:78156686 original size:45 final size:45
Alignment explanation
Indices: 78156621--78156744 Score: 164
Period size: 46 Copynumber: 2.7 Consensus size: 45
78156611 ACATATCCAT
78156621 GCCGATGCCATGTCCCAGACATGGTCTTACACTAAC-ACATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAACTACATCTCG-AG
**
78156667 GCCGATGCATGTCCCAGACATGT-TGTACACTGGCTTACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCT-TACACTAAC-TACATCTCGAG
78156713 GCCGATGCATGTCCCAGACATGTCTTACACTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTA
78156745 GCTCTCGTCT
Statistics
Matches: 70, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
43 1 0.01
44 9 0.13
45 15 0.21
46 44 0.63
47 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAACTACATCTCGAG
Found at i:78164182 original size:48 final size:47
Alignment explanation
Indices: 78164015--78164228 Score: 192
Period size: 46 Copynumber: 4.6 Consensus size: 47
78164005 GTGCAAATGC
* * * *
78164015 CATGTCCCAGACATGGTCTTACACT-G-AC-ACATCCCGTA-GCCAATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTACATCTC-AAGGCCGATG
78164060 CATGTCCCAGACATGTCTTACACTAGCT-TACATCTCAAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATCTCAAGGCCGATG
* * * **
78164106 CATGTCCCAGACATGTTTTACACTAGCTCT-CGTCTCAATGTTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATCTCAAGGCCGATG
* * * ** *
78164152 TCGTGTCCCAAACATGGTCTTACACTAGCTC-ACATAAT-GTGGCCAATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTACAT-CTCAAGGCCGATG
78164200 CATGTCCCAGACATGTCTTACACTAGCTC
1 CATGTCCCAGACATGTCTTACACTAGCTC
78164229 ACACAAGTGA
Statistics
Matches: 138, Mismatches: 22, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
44 10 0.07
45 16 0.12
46 66 0.48
47 25 0.18
48 20 0.14
49 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTACATCTCAAGGCCGATG
Found at i:78166362 original size:48 final size:47
Alignment explanation
Indices: 78166231--78166419 Score: 157
Period size: 48 Copynumber: 4.0 Consensus size: 47
78166221 TTAGGGGATA
* * * * * *
78166231 CATTGATTTGGATTCGGGCCATGATATTATCTCTTCGAGTGTGAGTT
1 CATTGATTTGGCTTCAGGCCATGATATTAGCACTTCAAGTGCGAGTT
* * ** * *
78166278 ACATAGATTTAGCTTCAGGCCATGATATCGGTACTTCAAGTGCAAGCTT
1 -CATTGATTTGGCTTCAGGCCATGATATTAGCACTTCAAGTGCGAG-TT
* ** *
78166327 TATTGATTTGGCTTCAGGCCATGATATTAGCACTTCGGGTGCGAGATA
1 CATTGATTTGGCTTCAGGCCATGATATTAGCACTTCAAGTGCGAG-TT
* *
78166375 CATTGAGTAGGCTTCAGGCCATGAT-TTGAGCAC-TCAATGTGCGAG
1 CATTGATTTGGCTTCAGGCCATGATATT-AGCACTTCAA-GTGCGAG
78166420 ATTCTGAGTA
Statistics
Matches: 110, Mismatches: 28, Indels: 6
0.76 0.19 0.04
Matches are distributed among these distances:
47 4 0.04
48 104 0.95
49 2 0.02
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (47 bp):
CATTGATTTGGCTTCAGGCCATGATATTAGCACTTCAAGTGCGAGTT
Found at i:78174684 original size:43 final size:43
Alignment explanation
Indices: 78174580--78174686 Score: 135
Period size: 43 Copynumber: 2.5 Consensus size: 43
78174570 AACCCAGCTT
* * * *
78174580 TGGTCTTACACGA-ACTCAAATAACGATGTCAATGTCCTACAAA
1 TGGTCTTACAC-ATAATCACATAACGATGCCAATGTCCCACAAA
* * *
78174623 TGGCCTTACACATAATCACATAATGATGCCAATGTCCCAGAAA
1 TGGTCTTACACATAATCACATAACGATGCCAATGTCCCACAAA
78174666 TGGTCTTACACATAATCACAT
1 TGGTCTTACACATAATCACAT
78174687 CTCATTACTC
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 1 0.02
43 54 0.98
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.26
Consensus pattern (43 bp):
TGGTCTTACACATAATCACATAACGATGCCAATGTCCCACAAA
Found at i:78177399 original size:86 final size:86
Alignment explanation
Indices: 78177251--78177422 Score: 299
Period size: 86 Copynumber: 2.0 Consensus size: 86
78177241 AAATTGACTC
* * *
78177251 ACACTGAGTTCATTTTGTTTGCAATTCATTATCAAGTTTTTGAGCTTCACATATCTGTTGTATAA
1 ACACTGAGTTCATTTTGTTTACAATTCATTATCAAGTTTTTGAGCTTCACAGATCTGCTGTATAA
78177316 ACAACGGTCTCGCTTTCCACT
66 ACAACGGTCTCGCTTTCCACT
* *
78177337 ACACTGAGTTCATTTTGTTTACAATTCATTATCAAGTTTTTGAGCTTTATAGATCTGCTGTATAA
1 ACACTGAGTTCATTTTGTTTACAATTCATTATCAAGTTTTTGAGCTTCACAGATCTGCTGTATAA
78177402 ACAACGGTCTCGCTTTCCACT
66 ACAACGGTCTCGCTTTCCACT
78177423 CAGCTACTAA
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
86 81 1.00
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.41
Consensus pattern (86 bp):
ACACTGAGTTCATTTTGTTTACAATTCATTATCAAGTTTTTGAGCTTCACAGATCTGCTGTATAA
ACAACGGTCTCGCTTTCCACT
Found at i:78180231 original size:46 final size:46
Alignment explanation
Indices: 78180164--78180341 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
78180154 TGTAACCCGC
*
78180164 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTAGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCAT
* * * *
78180210 CCATAAGTGAACTCAGACTCAACTCAACAAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTAGCAT
* *** * ** *
78180256 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCAT
*
78180303 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
78180342 CCCAAACATC
Statistics
Matches: 106, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
46 72 0.68
47 34 0.32
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCAT
Found at i:78180279 original size:93 final size:93
Alignment explanation
Indices: 78180172--78180343 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
78180162 GCCCATAAGT
***
78180172 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTAGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTAGCATCCATAAGTGAACTCAGACTCAACTCAA
78180237 CAAGCTCGGATGCCTAGTTACATCTCTC
66 CAAGCTCGGATGCCTAGTTACATCTCTC
* * *
78180265 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTAGCATCCATAAGTGAACTCAGACTCAACTCAA
* *
78180330 CGAGTTCGGATGCC
66 CAAGCTCGGATGCC
78180344 CAAACATCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTAGCATCCATAAGTGAACTCAGACTCAACTCAA
CAAGCTCGGATGCCTAGTTACATCTCTC
Found at i:78183383 original size:76 final size:76
Alignment explanation
Indices: 78183257--78183412 Score: 294
Period size: 76 Copynumber: 2.1 Consensus size: 76
78183247 CTTATCATAT
78183257 GGAAAAAGGCTTGTTTAACCTCTTCCCCGTGACCATTCTCATGGGTCTAGATTCAATAGGCATTG
1 GGAAAAAGGCTTGTTTAACCTCTTCCCCGTGACCATTCTCATGGGTCTAGATTCAATAGGCATTG
78183322 TCCCTTGAGCG
66 TCCCTTGAGCG
* *
78183333 GGAAAAAGGCTTGTTTAACCTCTTCCTCGTGACCATTCTCATGGGTCTAGATTCAATAGGCGTTG
1 GGAAAAAGGCTTGTTTAACCTCTTCCCCGTGACCATTCTCATGGGTCTAGATTCAATAGGCATTG
78183398 TCCCTTGAGCG
66 TCCCTTGAGCG
78183409 GGAA
1 GGAA
78183413 TTGGCACATT
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
76 78 1.00
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.30
Consensus pattern (76 bp):
GGAAAAAGGCTTGTTTAACCTCTTCCCCGTGACCATTCTCATGGGTCTAGATTCAATAGGCATTG
TCCCTTGAGCG
Found at i:78185203 original size:43 final size:43
Alignment explanation
Indices: 78185156--78185306 Score: 221
Period size: 43 Copynumber: 3.5 Consensus size: 43
78185146 TAGCCTAGCT
* * * *
78185156 ATGGTCTTACACAAAATCAAAGAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACACATAATCACATAATGATGCCAATGTCCCAGAC
* * *
78185199 ATGGTCTTACACGTAACCACATAGTGATGCCAATGTCCCAGAC
1 ATGGTCTTACACATAATCACATAATGATGCCAATGTCCCAGAC
* *
78185242 ATGGTCTTACACGTACTCACATAATGATGCCAATGTCCCAGAC
1 ATGGTCTTACACATAATCACATAATGATGCCAATGTCCCAGAC
78185285 ATGGTCTTACACATAATCACAT
1 ATGGTCTTACACATAATCACAT
78185307 CTCATTAATC
Statistics
Matches: 96, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 96 1.00
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (43 bp):
ATGGTCTTACACATAATCACATAATGATGCCAATGTCCCAGAC
Found at i:78192391 original size:5 final size:5
Alignment explanation
Indices: 78192381--78192407 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
78192371 GATGGCAACC
78192381 ATAAA ATAAA ATAAA ATAAA ATAAA AT
1 ATAAA ATAAA ATAAA ATAAA ATAAA AT
78192408 TTTAATTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
ATAAA
Found at i:78195533 original size:30 final size:30
Alignment explanation
Indices: 78195497--78195656 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
78195487 GACAAGATTG
* * * * *
78195497 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
* *
78195527 GCACTAAGTGTGCGAGTTTG---ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
78195555 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
78195584 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
78195614 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
78195643 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
78195657 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 48 0.40
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:78195625 original size:59 final size:57
Alignment explanation
Indices: 78195497--78195656 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
78195487 GACAAGATTG
* * * * * *
78195497 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATACA
*
78195555 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATACA
78195614 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
78195657 GATTCACTAT
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 50 0.54
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATACA
Found at i:78201520 original size:30 final size:29
Alignment explanation
Indices: 78201426--78201527 Score: 100
Period size: 28 Copynumber: 3.5 Consensus size: 29
78201416 TATAGTGAAT
* * *
78201426 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* * *
78201455 TCGTACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
78201483 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
78201513 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
78201528 CAATCTTGTC
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
28 22 0.37
29 17 0.29
30 20 0.34
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:78204279 original size:40 final size:40
Alignment explanation
Indices: 78204234--78204400 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
78204224 CGGAATATAA
78204234 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
78204274 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
78204314 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
78204354 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
78204393 CCGGATAT
1 CCGGATAT
78204401 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:78204384 original size:80 final size:79
Alignment explanation
Indices: 78204234--78204400 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
78204224 CGGAATATAA
* *
78204234 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
78204299 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
78204314 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
78204376 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
78204393 CCGGATAT
1 CCGGATAT
78204401 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:78205249 original size:17 final size:19
Alignment explanation
Indices: 78205226--78205271 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
78205216 AAGAAGCATG
78205226 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
78205244 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
78205262 AATCATGCTC
1 AATCATGCTC
78205272 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:78212229 original size:40 final size:40
Alignment explanation
Indices: 78212184--78212350 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
78212174 CGGAATATAA
78212184 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
78212224 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
78212264 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * * *
78212304 CCGGATAGAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
78212343 CCGGATAT
1 CCGGATAT
78212351 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 92 0.88
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:78212334 original size:80 final size:79
Alignment explanation
Indices: 78212184--78212350 Score: 214
Period size: 80 Copynumber: 2.1 Consensus size: 79
78212174 CGGAATATAA
* *
78212184 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
78212249 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* ** *
78212264 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATAGAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
78212326 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
78212343 CCGGATAT
1 CCGGATAT
78212351 CATTCAATTT
Statistics
Matches: 77, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
79 18 0.23
80 59 0.77
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:78216584 original size:27 final size:27
Alignment explanation
Indices: 78216551--78216870 Score: 410
Period size: 27 Copynumber: 11.9 Consensus size: 27
78216541 AGGGGTCTCA
** *
78216551 AGGGTATTTCAATAATTATACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
78216578 AGAGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
78216605 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
78216632 AGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
**
78216659 AGGGTATTTCACTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
78216686 AGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
78216713 AGCGTATTTCGGTAATTTTAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
78216739 AGGGTGTTTCAGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
** * * *
78216766 AGGGTATTTTAGTAAATTTGCAAACCG
1 AGGGTATTTCGGTAATTTTACAAATCG
78216793 AGGGTATTTCGGTAATTTTACAAA-CTG
1 AGGGTATTTCGGTAATTTTACAAATC-G
* * * *
78216820 GGGGTATTTTGATAATTTTATAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
78216847 GGGGTATTTCGATAATTTTACAAA
1 AGGGTATTTCGGTAATTTTACAAA
78216871 CTGGGGGTAT
Statistics
Matches: 256, Mismatches: 34, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
26 24 0.09
27 231 0.90
28 1 0.00
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:78217245 original size:28 final size:28
Alignment explanation
Indices: 78217208--78217271 Score: 119
Period size: 28 Copynumber: 2.3 Consensus size: 28
78217198 TGGCCCCTTT
78217208 AGGCCCAATCTCGTTCACATGGCCCATC
1 AGGCCCAATCTCGTTCACATGGCCCATC
*
78217236 AGGCCCAATCTCGTTCATATGGCCCATC
1 AGGCCCAATCTCGTTCACATGGCCCATC
78217264 AGGCCCAA
1 AGGCCCAA
78217272 CAACTTCCTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.23, C:0.38, G:0.19, T:0.20
Consensus pattern (28 bp):
AGGCCCAATCTCGTTCACATGGCCCATC
Found at i:78224316 original size:27 final size:28
Alignment explanation
Indices: 78224259--78224328 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
78224249 AAACTTGTAC
*
78224259 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
78224287 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
78224314 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
78224329 GACACACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:78241676 original size:40 final size:40
Alignment explanation
Indices: 78241627--78241794 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
78241617 TCTTCGGAAT
* * *
78241627 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
78241666 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *
78241706 TTAGCCCGGATATAACAACTCGTACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *
78241746 TTAGCCCGGATAGAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
78241786 TTAGCCCGG
1 TTAGCCCGG
78241795 GTATCATTCA
Statistics
Matches: 104, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 3 0.03
40 100 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:78246594 original size:29 final size:28
Alignment explanation
Indices: 78246560--78246662 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
78246550 TACTCAATCA
*
78246560 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
78246589 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
78246618 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
78246647 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
78246663 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:78254611 original size:29 final size:28
Alignment explanation
Indices: 78254577--78254679 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
78254567 TACTCAATCA
*
78254577 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
78254606 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
78254635 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
78254664 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
78254680 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:78264655 original size:46 final size:45
Alignment explanation
Indices: 78264601--78264768 Score: 171
Period size: 46 Copynumber: 3.6 Consensus size: 45
78264591 CATCCAAACC
78264601 CGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACT
1 CGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA-GTCCGAACT
* * * * *
78264647 TGTTGAGTTGTGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCGAACT
1 CGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A-G--TCCGAACT
* * * *
78264694 CGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAAAGCCCGAGCT
1 CGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AAAGTCCGAACT
78264740 CGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CGTTGAGTTGAGTCCGAGTTCACTTATGG
78264769 GCGGGTTACA
Statistics
Matches: 98, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 52 0.53
47 26 0.27
48 3 0.03
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.30
Consensus pattern (45 bp):
CGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGTCCGAACT
Done.