Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 272 of 444
Found at i:78264748 original size:93 final size:93
Alignment explanation
Indices: 78264589--78264760 Score: 256
Period size: 93 Copynumber: 1.8 Consensus size: 93
78264579 AGGATATTTG
* * *
78264589 GGCATCCAAACCCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTTGTTGAG
1 GGCATCCAAACCCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAG
*
78264654 TTGTGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
78264682 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAAA-GCCCGAGCTCGTTGA
1 GGCATCCAAACCCGTTGAGTTGAGTCCGAGTTCACTCATGGATGC-AAATGCCCGAACTCGTTGA
78264746 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
78264761 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
93 67 0.96
94 3 0.04
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCAAACCCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:78267696 original size:15 final size:15
Alignment explanation
Indices: 78267676--78267744 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
78267666 GTATCTTGGG
78267676 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
78267691 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
78267706 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
78267721 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
78267736 TTTCTTTAT
1 TTTCTTTAT
78267745 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:78267745 original size:30 final size:30
Alignment explanation
Indices: 78267667--78267754 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
78267657 CATAGTATCG
* * * *
78267667 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
78267697 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
78267727 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
78267755 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:78282371 original size:29 final size:29
Alignment explanation
Indices: 78282329--78282410 Score: 146
Period size: 29 Copynumber: 2.8 Consensus size: 29
78282319 TGCCGTATTT
**
78282329 TTTCCAGCTTGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
78282358 TTTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
78282387 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCACGCACACTTAGTGCC
78282411 GATCTCGTCA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.24, C:0.32, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTCCAGCACGCACACTTAGTGCCATATA
Found at i:78286591 original size:16 final size:15
Alignment explanation
Indices: 78286567--78286596 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
78286557 AACTGTTTTA
78286567 TTACAAATTTCACTC
1 TTACAAATTTCACTC
78286582 TTACATAATTTCACT
1 TTACA-AATTTCACT
78286597 TACTCCATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:78286923 original size:50 final size:50
Alignment explanation
Indices: 78286867--78287043 Score: 151
Period size: 50 Copynumber: 3.5 Consensus size: 50
78286857 TTGTAGCTTG
*
78286867 CACTTAGTACTACACACGTGAACTAACCATCTAATGCACCTAGTAGCCTA
1 CACTTAGTACTACACACGTGAACTAACCATCTAGTGCACCTAGTAGCCTA
* ** * * *
78286917 CACTTAGTACTACACACGTG-ATTGAA-GTTGTCGGGCACGCGTAGTAGCCTA
1 CACTTAGTACTACACACGTGAACT-AACCATCTAGTGCAC-C-TAGTAGCCTA
* * * * * * * * * * *
78286968 GACTTAGTACTGCACATGCGACCTAACTATTTGGTACACGTAGTAGCCTG
1 CACTTAGTACTACACACGTGAACTAACCATCTAGTGCACCTAGTAGCCTA
78287018 CACTTAGTACTACACACGTGAACTAA
1 CACTTAGTACTACACACGTGAACTAA
78287044 AACCATCTTA
Statistics
Matches: 96, Mismatches: 26, Indels: 10
0.73 0.20 0.08
Matches are distributed among these distances:
49 8 0.08
50 53 0.55
51 28 0.29
52 7 0.07
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (50 bp):
CACTTAGTACTACACACGTGAACTAACCATCTAGTGCACCTAGTAGCCTA
Found at i:78291910 original size:29 final size:29
Alignment explanation
Indices: 78291775--78291909 Score: 234
Period size: 29 Copynumber: 4.7 Consensus size: 29
78291765 GCTTGGAAGG
78291775 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
78291804 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
78291833 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
* **
78291862 TATGGCACTAAGTGTGCGAGCTTAAATCG
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
78291891 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
78291910 GATCGTTTAT
Statistics
Matches: 102, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 102 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.29
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTTAAATTA
Found at i:78299054 original size:29 final size:29
Alignment explanation
Indices: 78298919--78299053 Score: 234
Period size: 29 Copynumber: 4.7 Consensus size: 29
78298909 GCTTGGAAGG
78298919 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
78298948 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
78298977 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
* **
78299006 TATGGCACTAAGTGTGCGAGCTTAAATCG
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
78299035 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
78299054 GATCGTTTAT
Statistics
Matches: 102, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 102 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.29
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTTAAATTA
Found at i:78302972 original size:16 final size:15
Alignment explanation
Indices: 78302948--78302977 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
78302938 AACTGTTTTA
78302948 TTACAAATTTCACTC
1 TTACAAATTTCACTC
78302963 TTACATAATTTCACT
1 TTACA-AATTTCACT
78302978 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:78303251 original size:49 final size:50
Alignment explanation
Indices: 78303177--78303313 Score: 188
Period size: 50 Copynumber: 2.8 Consensus size: 50
78303167 AACCGAAGCT
* * *
78303177 ATCTGGTACGCGTAGTAGCCCGCACTTAGTACTACACAT-TCGACC-AACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGT-GACCTAACA
* * *
78303226 ATCTGATACACGTAGTAGCCTGCACTTAGTACAAAACATGTGACCTAACC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACA
*
78303276 ATCTGATACACGTAGTAGCTTGCACTTAGTACTACACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACA
78303314 CATGATTGAA
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
49 38 0.49
50 39 0.51
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACA
Found at i:78303294 original size:50 final size:49
Alignment explanation
Indices: 78303177--78303307 Score: 174
Period size: 49 Copynumber: 2.7 Consensus size: 49
78303167 AACCGAAGCT
* * * * *
78303177 ATCTGGTACGCGTAGTAGCCCGCACTTAGTACTACACATTCGACCAACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACAAAACATTCGACCAACA
*
78303226 ATCTGATACACGTAGTAGCCTGCACTTAGTACAAAACATGT-GACCTAACC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACAAAACAT-TCGACC-AACA
*
78303276 ATCTGATACACGTAGTAGCTTGCACTTAGTAC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTAC
78303308 TACACACATG
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
49 38 0.52
50 35 0.48
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACAAAACATTCGACCAACA
Found at i:78303405 original size:33 final size:33
Alignment explanation
Indices: 78303345--78303407 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
78303335 TGCATAGTAA
**
78303345 CCTGCACTTAGTACTACACATGCGACCTAACAG
1 CCTGCACTTAGTACTACACACACGACCTAACAG
*
78303378 CCTGCACTTAGTACTACACACATGACCTAA
1 CCTGCACTTAGTACTACACACACGACCTAA
78303408 AACCATCTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.32, C:0.33, G:0.13, T:0.22
Consensus pattern (33 bp):
CCTGCACTTAGTACTACACACACGACCTAACAG
Found at i:78305804 original size:11 final size:11
Alignment explanation
Indices: 78305788--78305812 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
78305778 AAAACACAAG
78305788 CTACGTTAGTC
1 CTACGTTAGTC
78305799 CTACGTTAGTC
1 CTACGTTAGTC
78305810 CTA
1 CTA
78305813 TGGCTCTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.28, G:0.16, T:0.36
Consensus pattern (11 bp):
CTACGTTAGTC
Found at i:78309302 original size:28 final size:28
Alignment explanation
Indices: 78309269--78309371 Score: 152
Period size: 28 Copynumber: 3.7 Consensus size: 28
78309259 ATTGCATGAC
*
78309269 TATGAATGTGATTGGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* *
78309297 TATGAAAGTGATTGGGCCTGATGGGCTA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
78309325 TATGAATGTGATTGGGCCCGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* *
78309353 TATGAATGAGATTAGGCCT
1 TATGAATGTGATTGGGCCT
78309372 AAATGGGTCA
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.24, C:0.15, G:0.34, T:0.27
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:78326958 original size:43 final size:43
Alignment explanation
Indices: 78326865--78327012 Score: 120
Period size: 43 Copynumber: 3.4 Consensus size: 43
78326855 CAATGTCATA
* * ** * * *
78326865 TCCCAGATATGGTCTTACATGTTATCAC-ATATAGATGCCACTA
1 TCCCAGACATGGTCTTACACGAAATCTCAATATA-ATGCCAATG
* * * * *
78326908 TCTCAGACAAGGTCTTACACGAAATC-GATTAATGATGCCAATG
1 TCCCAGACATGGTCTTACACGAAATCTCAAT-ATAATGCCAATG
* * *
78326951 TCCCAGACATGGTGTTATACGTAATCTCAATATAATGCCAATG
1 TCCCAGACATGGTCTTACACGAAATCTCAATATAATGCCAATG
*
78326994 TCCCAAACATGGTCTTACA
1 TCCCAGACATGGTCTTACA
78327013 TGTAATCACA
Statistics
Matches: 80, Mismatches: 22, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
43 76 0.95
44 4 0.05
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGAAATCTCAATATAATGCCAATG
Found at i:78332445 original size:30 final size:30
Alignment explanation
Indices: 78332390--78332548 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
78332380 AGAGTGAATC
78332390 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
78332419 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
78332449 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
78332478 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
78332506 CGCACAC-TAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
78332535 CGCACACTTAGTGC
1 CGCACACTTAGTGC
78332549 CAATCTTGTC
Statistics
Matches: 118, Mismatches: 5, Indels: 13
0.87 0.04 0.10
Matches are distributed among these distances:
27 13 0.11
28 10 0.08
29 58 0.49
30 37 0.31
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:78332539 original size:57 final size:57
Alignment explanation
Indices: 78332390--78332548 Score: 178
Period size: 59 Copynumber: 2.8 Consensus size: 57
78332380 AGAGTGAATC
* * * * *
78332390 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAAATTTTAAACCCGCACACTTAGTGCTATATAA--TTCAACT
* * * *
78332449 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATAAATTTTAAACCCGCACACTTAGTGCTATATAATTC-AACT
*
78332506 CGCACAC-TAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-AATTTTAAACCCGCACACTTAGTGC
78332549 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
56 11 0.12
57 31 0.34
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATAAATTTTAAACCCGCACACTTAGTGCTATATAATTCAACT
Found at i:78338046 original size:26 final size:27
Alignment explanation
Indices: 78338017--78338078 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 27
78338007 AGGCCATTTC
78338017 TGGGCTGT-ATGGG-CCACATAGGTGTG
1 TGGGCT-TAATGGGCCCACATAGGTGTG
*
78338043 TGGGCTTACATGGGCCCACATGGGTGTG
1 TGGGCTTA-ATGGGCCCACATAGGTGTG
*
78338071 TGAGCTTA
1 TGGGCTTA
78338079 CGTGGGCCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 1 0.03
26 6 0.19
27 5 0.16
28 19 0.61
ACGTcount: A:0.16, C:0.18, G:0.39, T:0.27
Consensus pattern (27 bp):
TGGGCTTAATGGGCCCACATAGGTGTG
Found at i:78338068 original size:28 final size:28
Alignment explanation
Indices: 78338025--78338086 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
78338015 TCTGGGCTGT
*
78338025 ATGGG-CCACATAGGTGTGTGGGCTTAC
1 ATGGGCCCACATAGGTGTGTGAGCTTAC
*
78338052 ATGGGCCCACATGGGTGTGTGAGCTTAC
1 ATGGGCCCACATAGGTGTGTGAGCTTAC
*
78338080 GTGGGCC
1 ATGGGCC
78338087 TAGTTTCACT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
27 5 0.16
28 26 0.84
ACGTcount: A:0.16, C:0.21, G:0.39, T:0.24
Consensus pattern (28 bp):
ATGGGCCCACATAGGTGTGTGAGCTTAC
Found at i:78341705 original size:29 final size:29
Alignment explanation
Indices: 78341659--78341783 Score: 189
Period size: 29 Copynumber: 4.3 Consensus size: 29
78341649 AAAAGCATGT
*
78341659 ATATGAATGTGATTTGGGCCTAATGGGTC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
78341688 ATAAGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
78341717 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
78341746 ATATGAATGAGA-TTGGGCGTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
78341774 ATATGCATGT
1 ATATGAATGT
78341784 ATGTAGACTT
Statistics
Matches: 88, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
28 22 0.25
29 66 0.75
ACGTcount: A:0.26, C:0.12, G:0.32, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:78344472 original size:80 final size:80
Alignment explanation
Indices: 78344388--78344536 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
78344378 TATGGTAACC
* * * *
78344388 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
78344452 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
78344468 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
78344533 CCGG
66 CCGG
78344537 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:78344478 original size:40 final size:38
Alignment explanation
Indices: 78344429--78344536 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
78344419 ATCACGATTT
*
78344429 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
78344469 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
78344509 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
78344537 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:78352563 original size:80 final size:80
Alignment explanation
Indices: 78352479--78352627 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
78352469 TATGGTAACC
* * * *
78352479 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
78352543 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
78352559 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
78352624 CCGG
66 CCGG
78352628 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:78352569 original size:40 final size:38
Alignment explanation
Indices: 78352520--78352627 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
78352510 ATCACGATTT
*
78352520 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
78352560 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
78352600 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
78352628 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:78368095 original size:39 final size:40
Alignment explanation
Indices: 78367969--78368097 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
78367959 ATGCTGGAAA
* * *
78367969 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
78368009 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
78368049 TTCTATCCGGGCTAAGACCC-AAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
78368088 TTATATCCGG
1 TTATATCCGG
78368098 TTATATTCCG
Statistics
Matches: 73, Mismatches: 15, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
38 1 0.01
39 23 0.32
40 49 0.67
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:78376555 original size:46 final size:45
Alignment explanation
Indices: 78376503--78376706 Score: 188
Period size: 46 Copynumber: 4.5 Consensus size: 45
78376493 GTCGATGCCG
* * *
78376503 TGTCCCAGACAGGTCTTACACTGA-CACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCT---CGTAGCCGACGCA
*
78376549 TGTCCCATACATGTCTTACACT-AGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
* *
78376593 TGTCCCAGACATGTCTGACACTG-GCTATCATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTGAGC-A-CATCTCGTA-GCCGACGCA
* * * *
78376639 TGTCCCAGACATGTCTTACACTG-GCTC-TCATACTGTGGCTGATGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATC-T-C-GTAGCCGACGCA
78376685 TGTCCCAGACATGTCTTACACT
1 TGTCCCAGACATGTCTTACACT
78376707 AGCCCTCGTC
Statistics
Matches: 137, Mismatches: 11, Indels: 20
0.82 0.07 0.12
Matches are distributed among these distances:
43 5 0.04
44 32 0.23
45 4 0.03
46 96 0.70
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
Found at i:78376706 original size:92 final size:91
Alignment explanation
Indices: 78376546--78376762 Score: 249
Period size: 92 Copynumber: 2.4 Consensus size: 91
78376536 CCGTGCTGAC
*
78376546 GCATGTCCCATACATGTCTTACACTAG-CACATCTCGTAGCCGACGCATGTCCCAGACATGTCTG
1 GCATGTCCCATACATGTCTTACACTGGCCACATCTCGTAGCCGACGCATGTCCCAGACATGTCTG
* * *
78376610 ACACTGGCTATCATCTCGAGGCCGAT
66 ACACTAGCCATCATCTCAAGGCCGAT
* * * * *
78376636 GCATGTCCCAGACATGTCTTACACTGGCTCTCATACT-GTGGCTGATGCATGTCCCAGACATGTC
1 GCATGTCCCATACATGTCTTACACTGGC-CACAT-CTCGTAGCCGACGCATGTCCCAGACATGTC
* * * *
78376700 TTACACTAGCCCTCGTCTCAATGCCGAT
64 TGACACTAGCCATCATCTCAAGGCCGAT
*
78376728 GCCATGTCTCATACATGGTCTTACACTGGCACACA
1 G-CATGTCCCATACAT-GTCTTACACTGGC-CACA
78376763 AATCTCATGT
Statistics
Matches: 105, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
90 25 0.24
92 50 0.48
93 14 0.13
94 16 0.15
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (91 bp):
GCATGTCCCATACATGTCTTACACTGGCCACATCTCGTAGCCGACGCATGTCCCAGACATGTCTG
ACACTAGCCATCATCTCAAGGCCGAT
Found at i:78376729 original size:46 final size:44
Alignment explanation
Indices: 78376546--78376754 Score: 181
Period size: 46 Copynumber: 4.6 Consensus size: 44
78376536 CCGTGCTGAC
* *
78376546 GCATGTCCCATACATGTCTTACACTAGCACATC-TCGTA-GCCGAC
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCATC-TATGCCGAT
* * * *
78376590 GCATGTCCCAGACATGTCTGACACTGGCTATCATCTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
* * *
78376636 GCATGTCCCAGACATGTCTTACACTGGCTC-TCATACTGTGGCTGAT
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCAT-CTAT-GCCGAT
* *
78376682 GCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
* *
78376728 GCCATGTCTCATACATGGTCTTACACT
1 G-CATGTCCCAGACAT-GTCTTACACT
78376755 GGCACACAAA
Statistics
Matches: 137, Mismatches: 16, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
43 4 0.03
44 27 0.20
45 4 0.03
46 77 0.56
47 15 0.11
48 10 0.07
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.27
Consensus pattern (44 bp):
GCATGTCCCAGACATGTCTTACACTAGCCATCATCTATGCCGAT
Found at i:78381242 original size:40 final size:40
Alignment explanation
Indices: 78381176--78381342 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
78381166 AAATTGAATG
* * *
78381176 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
78381215 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
78381255 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
78381295 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
78381335 ATATCCGG
1 ATATCCGG
78381343 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:78387838 original size:39 final size:40
Alignment explanation
Indices: 78387753--78387918 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
78387743 AAATTGAATG
* * **
78387753 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGATT
* * *
78387792 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
* *
78387832 AT-TCCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGATT
* *
78387871 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGATT
78387911 ATATCCGG
1 ATATCCGG
78387919 TTATATTCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 43 0.41
40 56 0.54
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
Found at i:78394136 original size:40 final size:40
Alignment explanation
Indices: 78394059--78394276 Score: 343
Period size: 40 Copynumber: 5.5 Consensus size: 40
78394049 AAACCAAGTA
* *
78394059 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
78394098 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
78394138 CCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
78394178 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
78394218 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
78394258 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
78394277 TTATCATCCG
Statistics
Matches: 168, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 15 0.09
40 153 0.91
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:78397059 original size:2 final size:2
Alignment explanation
Indices: 78397052--78397076 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
78397042 TCATGACATG
78397052 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
78397077 GACTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:78400310 original size:62 final size:63
Alignment explanation
Indices: 78400231--78400412 Score: 183
Period size: 67 Copynumber: 2.8 Consensus size: 63
78400221 AGACATTATG
* *
78400231 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTAATGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
78400293 ATGTAGCTAGGTCGCATGTGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGATACTAA-T---GTACACCATGTAGACAAGAGAGCTACGAGAT
78400358 AA
62 AA
* * *
78400360 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTAA-TGTACACCATGTAG-ACAAGAGAGC
78400413 CGAACTATAT
Statistics
Matches: 100, Mismatches: 13, Indels: 13
0.79 0.10 0.10
Matches are distributed among these distances:
62 24 0.24
63 20 0.20
64 1 0.01
66 22 0.22
67 31 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGATACTAATGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:78401497 original size:2 final size:2
Alignment explanation
Indices: 78401490--78401514 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
78401480 TCATGACATG
78401490 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
78401515 GACTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:78402838 original size:56 final size:56
Alignment explanation
Indices: 78402778--78402914 Score: 213
Period size: 56 Copynumber: 2.4 Consensus size: 56
78402768 TCCCAGACAG
* * * *
78402778 GGTCTTACTCGAACACATATATCGAAGTCACATATGGATGCCAACGTATAAAATGT
1 GGTCTTACTCGAACACATATATCGAAGTCACATATCGATGCCAAAGCATAAAACGT
78402834 GGTCTTACTC-ACACACATATATCGAAGTCACATATCGATGCCAAAGCATAAAACGT
1 GGTCTTACTCGA-ACACATATATCGAAGTCACATATCGATGCCAAAGCATAAAACGT
*
78402890 GGTCTTACTCGCACACATATATCGA
1 GGTCTTACTCGAACACATATATCGA
78402915 TGCCATGGTC
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
55 1 0.01
56 73 0.99
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (56 bp):
GGTCTTACTCGAACACATATATCGAAGTCACATATCGATGCCAAAGCATAAAACGT
Found at i:78403618 original size:14 final size:15
Alignment explanation
Indices: 78403599--78403627 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
78403589 TCACGAAAAT
78403599 TTCACACAT-ATAAA
1 TTCACACATAATAAA
78403613 TTCACACATAATAAA
1 TTCACACATAATAAA
78403628 CACAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:78414546 original size:40 final size:40
Alignment explanation
Indices: 78414502--78414652 Score: 166
Period size: 40 Copynumber: 3.8 Consensus size: 40
78414492 GGATATAGCT
*
78414502 ACTCGCTCAAATGCCTTCGGGA-TATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACT-TAGCCCGGATT-GAGTA
* *
78414542 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTGAGTA
* *
78414582 ACTCGCACAAATGCCTTCGGGACTT-GCCCGGAACT-AGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATTGAGTA
* * * *
78414621 ACTAGCGCAGATGCCTTCGGGAATTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
78414653 TTATCATCCA
Statistics
Matches: 97, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
39 30 0.31
40 64 0.66
41 3 0.03
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTGAGTA
Found at i:78422215 original size:15 final size:16
Alignment explanation
Indices: 78422186--78422218 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
78422176 GAAATGTATT
78422186 TTCTCAATATCTCATA
1 TTCTCAATATCTCATA
*
78422202 TTCT-AATATTTCATA
1 TTCTCAATATCTCATA
78422217 TT
1 TT
78422219 AATAATCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.30, C:0.18, G:0.00, T:0.52
Consensus pattern (16 bp):
TTCTCAATATCTCATA
Found at i:78429593 original size:16 final size:16
Alignment explanation
Indices: 78429572--78429602 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
78429562 AATTAATAAT
78429572 ATAATACAAATGTATC
1 ATAATACAAATGTATC
78429588 ATAATACAAATGTAT
1 ATAATACAAATGTAT
78429603 ACATTTACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.32
Consensus pattern (16 bp):
ATAATACAAATGTATC
Found at i:78440002 original size:13 final size:13
Alignment explanation
Indices: 78439984--78440008 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78439974 ATTTATGATC
78439984 TCAAGTTCAATTT
1 TCAAGTTCAATTT
78439997 TCAAGTTCAATT
1 TCAAGTTCAATT
78440009 ACCAATTGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.44
Consensus pattern (13 bp):
TCAAGTTCAATTT
Found at i:78442426 original size:2 final size:2
Alignment explanation
Indices: 78442413--78442444 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
78442403 AGATTTACAT
*
78442413 TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
78442445 AATCCTCACA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:78443122 original size:9 final size:9
Alignment explanation
Indices: 78443108--78443145 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
78443098 TTCTTTAGAC
78443108 CATCATCAG
1 CATCATCAG
78443117 CATCATCAG
1 CATCATCAG
*
78443126 CATCATCAT
1 CATCATCAG
*
78443135 CAACATCAG
1 CATCATCAG
78443144 CA
1 CA
78443146 GCCTCGGATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.37, C:0.34, G:0.08, T:0.21
Consensus pattern (9 bp):
CATCATCAG
Found at i:78445895 original size:19 final size:20
Alignment explanation
Indices: 78445852--78445895 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
78445842 TCCCTTTTTT
78445852 CTTTTGTTTTTTCTTCTTAA
1 CTTTTGTTTTTTCTTCTTAA
* * *
78445872 ATTTTG-TTTTTCTTTTTAC
1 CTTTTGTTTTTTCTTCTTAA
78445891 CTTTT
1 CTTTT
78445896 TAAACTGACT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.09, C:0.14, G:0.05, T:0.73
Consensus pattern (20 bp):
CTTTTGTTTTTTCTTCTTAA
Found at i:78446395 original size:27 final size:26
Alignment explanation
Indices: 78446364--78446428 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 26
78446354 TTAAGTTACA
78446364 AAAATTAGAC-AACAATATATTGGTTGC
1 AAAA-TAGACGAA-AATATATTGGTTGC
*
78446391 AAAATAGAGTTCGTAAATATATTGGTTGC
1 AAAATAGA---CGAAAATATATTGGTTGC
78446420 AAAATAGAC
1 AAAATAGAC
78446429 TTCATAACAA
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
26 5 0.15
27 4 0.12
29 23 0.70
30 1 0.03
ACGTcount: A:0.45, C:0.09, G:0.17, T:0.29
Consensus pattern (26 bp):
AAAATAGACGAAAATATATTGGTTGC
Found at i:78446733 original size:14 final size:15
Alignment explanation
Indices: 78446712--78446750 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
78446702 ACGTTAGCGA
**
78446712 ATAAAATAATTAAAT
1 ATAAAATAAACAAAT
78446727 A-AAAATAAACAAAT
1 ATAAAATAAACAAAT
78446741 ATAAAATAAA
1 ATAAAATAAA
78446751 ATATGAACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (15 bp):
ATAAAATAAACAAAT
Found at i:78448880 original size:22 final size:22
Alignment explanation
Indices: 78448846--78448887 Score: 68
Period size: 21 Copynumber: 1.9 Consensus size: 22
78448836 GATGCCATTA
78448846 GTTTAAGTTAATTAAAGATTAGT
1 GTTTAAGTTAATT-AAGATTAGT
78448869 GTTTAA-TTAATTAAGATTA
1 GTTTAAGTTAATTAAGATTA
78448888 AACTAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
22 6 0.32
23 6 0.32
ACGTcount: A:0.40, C:0.00, G:0.14, T:0.45
Consensus pattern (22 bp):
GTTTAAGTTAATTAAGATTAGT
Found at i:78449064 original size:25 final size:25
Alignment explanation
Indices: 78449030--78449077 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
78449020 ATACAATCGA
78449030 CCATCATTTACAAGTAAGTCCCTAG
1 CCATCATTTACAAGTAAGTCCCTAG
78449055 CCATCATTTACAAGTAAGTCCCT
1 CCATCATTTACAAGTAAGTCCCT
78449078 TATACGCCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.10, T:0.29
Consensus pattern (25 bp):
CCATCATTTACAAGTAAGTCCCTAG
Found at i:78449131 original size:19 final size:19
Alignment explanation
Indices: 78449083--78449119 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
78449073 TCCCTTATAC
78449083 GCCAGGATGCACCTCATGT
1 GCCAGGATGCACCTCATGT
*
78449102 GCCAGGATGCACTTCATG
1 GCCAGGATGCACCTCATG
78449120 CTCTAGGATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.22
Consensus pattern (19 bp):
GCCAGGATGCACCTCATGT
Found at i:78451131 original size:28 final size:27
Alignment explanation
Indices: 78451068--78451137 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
78451058 ATAGTGAGTC
78451068 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
78451095 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
78451123 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
78451138 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:78451640 original size:2 final size:2
Alignment explanation
Indices: 78451635--78451662 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
78451625 TCACACATGC
78451635 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78451663 GGCCGAATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:78454809 original size:7 final size:7
Alignment explanation
Indices: 78454797--78454823 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
78454787 ATATGATTAA
78454797 ATTATTT
1 ATTATTT
78454804 ATTATTT
1 ATTATTT
78454811 ATTATTT
1 ATTATTT
78454818 ATTATT
1 ATTATT
78454824 AAATTATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (7 bp):
ATTATTT
Found at i:78454833 original size:14 final size:15
Alignment explanation
Indices: 78454792--78454831 Score: 64
Period size: 14 Copynumber: 2.7 Consensus size: 15
78454782 TTAAAATATG
78454792 ATTAAATTATTTATT
1 ATTAAATTATTTATT
*
78454807 ATT-TATTATTTATT
1 ATTAAATTATTTATT
78454821 ATTAAATTATT
1 ATTAAATTATT
78454832 ATAATAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 13 0.59
15 9 0.41
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
ATTAAATTATTTATT
Found at i:78456310 original size:31 final size:29
Alignment explanation
Indices: 78456274--78456353 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
78456264 ATCTAATAAC
*
78456274 TATACATGAATTATGATTCAATGTGTAATTA
1 TATACATGAATTTTGATT--ATGTGTAATTA
** * *
78456305 TATACACAAATTTTGATTTTGTGTAATTT
1 TATACATGAATTTTGATTATGTGTAATTA
78456334 TATACATGAAATTTTGATTA
1 TATACATG-AATTTTGATTA
78456354 ATTCAATTCT
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
29 15 0.38
30 10 0.25
31 15 0.38
ACGTcount: A:0.36, C:0.06, G:0.11, T:0.46
Consensus pattern (29 bp):
TATACATGAATTTTGATTATGTGTAATTA
Found at i:78456328 original size:29 final size:30
Alignment explanation
Indices: 78456295--78456352 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
78456285 TATGATTCAA
78456295 TGTGTAATTATATACA-CAAATTTTGATTT
1 TGTGTAATTATATACATCAAATTTTGATTT
* *
78456324 TGTGTAATTTTATACATGAAATTTTGATT
1 TGTGTAATTATATACATCAAATTTTGATT
78456353 AATTCAATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.33, C:0.05, G:0.12, T:0.50
Consensus pattern (30 bp):
TGTGTAATTATATACATCAAATTTTGATTT
Found at i:78457543 original size:21 final size:21
Alignment explanation
Indices: 78457505--78457549 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
78457495 TATTTTAAAA
* *
78457505 AATGATAGTAATAGTAATAGT
1 AATGATAATAAAAGTAATAGT
* *
78457526 AATGATAATAAAATTAATGGT
1 AATGATAATAAAAGTAATAGT
78457547 AAT
1 AAT
78457550 AATACAAGTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.16, T:0.33
Consensus pattern (21 bp):
AATGATAATAAAAGTAATAGT
Found at i:78457684 original size:3 final size:3
Alignment explanation
Indices: 78457676--78458094 Score: 239
Period size: 3 Copynumber: 140.0 Consensus size: 3
78457666 GGTAAAAAAT
*
78457676 ATA ATA ATA ATA AT- ATA ATA GTA ATA ATA ATA ATA AGGTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA ATA ATA
* * * *
78457722 ATA ATG ATA ACA ATA ATA ATA ATA AT- ATA AGTAA ATA CAGA GAGA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-T-A ATA -ATA -ATA ATA
* * *
78457769 ATA TATA AT- ATA ATA ATA ACA AT- ATA A-A ATTA ATCA GT- CTA ATA
1 ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA AT-A ATA ATA ATA
* * * * * * **
78457813 AT- ATG ATG ATA ATT CTA GTA ATA ATA ATA A-A GTGGA A-A ACG ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT--A ATA ATA ATA
* * * * * **
78457857 ATA ATA ATA CATTA ATA AGA ATA AAA ACA AT- ATA TTT ATA ATA ACG
1 ATA ATA ATA -A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * **
78457903 ATAA ATA ATA AT- ATA ATA A-A ATA AGAA ATA ATA A-A GACA ACC ATA
1 AT-A ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA -ATA ATA ATA
*
78457948 AT- ATAA ATA ATAA ATA A-A A-A ACA ATA ATA ATA ATA A-A AT- ATA
1 ATA AT-A ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
78457990 AGTA ATA GTA ATA ATA AT- ATA ATA ATA ATA GTA GTA ATA ATA ATA
1 A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
78458035 ATA ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
78458083 ATA ATA ATA ATA
1 ATA ATA ATA ATA
78458095 GTGTTAGAAA
Statistics
Matches: 329, Mismatches: 50, Indels: 74
0.73 0.11 0.16
Matches are distributed among these distances:
2 37 0.11
3 255 0.78
4 29 0.09
5 8 0.02
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:78457963 original size:31 final size:28
Alignment explanation
Indices: 78457915--78457980 Score: 78
Period size: 31 Copynumber: 2.2 Consensus size: 28
78457905 AAATAATAAT
78457915 ATAATAAAATAAGAAATAATAAAGACAACC
1 ATAATAAAATAAGAAATAA-AAA-ACAACC
* **
78457945 ATAATATAAATAATAAATAAAAAACAATA
1 ATAATA-AAATAAGAAATAAAAAACAACC
78457974 ATAATAA
1 ATAATAA
78457981 TAAAATATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
28 1 0.03
29 10 0.31
30 9 0.28
31 12 0.38
ACGTcount: A:0.70, C:0.06, G:0.03, T:0.21
Consensus pattern (28 bp):
ATAATAAAATAAGAAATAAAAAACAACC
Found at i:78459803 original size:88 final size:88
Alignment explanation
Indices: 78459610--78459822 Score: 248
Period size: 88 Copynumber: 2.4 Consensus size: 88
78459600 AATTTGTTAT
* * * * * * *
78459610 CTTCACTCTGCTCCACTGCAACTTCAAGGAAATAAGACTTGTAACTTCAACTTGCTCTACTGCAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAATCGTAACTTCAACCTGCCCTACTGCAA
* *
78459675 CTTCAATGAGGTAAGAATTGTTG
66 CTTCAAGGAGGTAAGAATTGTGG
** * *
78459698 CTTTGATCTACTCCACTGCAACTTTAGGGAGATAAGAATCGTAACTTCAACCTGCCCTACTGCAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAATCGTAACTTCAACCTGCCCTACTGCAA
* **
78459763 CTT-AAGGGGGATAAGGTTTGTGG
66 CTTCAAGGAGG-TAAGAATTGTGG
* *
78459786 CTTCAATCTGCTTCACTGTAACTTCAGGGAGATAAGA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
78459823 CTTGCTATCT
Statistics
Matches: 102, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
87 5 0.05
88 97 0.95
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (88 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAATCGTAACTTCAACCTGCCCTACTGCAA
CTTCAAGGAGGTAAGAATTGTGG
Found at i:78459864 original size:45 final size:44
Alignment explanation
Indices: 78459565--78459910 Score: 205
Period size: 44 Copynumber: 7.8 Consensus size: 44
78459555 TGATTTCTAA
* * * * *
78459565 CTTCAATCTACTCCA-TCGCAACTTCAGGGAGACAAAATTTGTTAT
1 CTTCAATCTACTCCACT-GTAACTTCAGGGAGATAAGACTTG-CAT
* * * * * * *
78459610 CTTCACTCTGCTCCACTGCAACTTCAAGGAAATAAGACTTGTAA
1 CTTCAATCTACTCCACTGTAACTTCAGGGAGATAAGACTTGCAT
* * * ** * * *
78459654 CTTCAA-CTTGCTCTACTGCAACTTCAATGAGGTAAGAATTG-TT
1 CTTCAATC-TACTCCACTGTAACTTCAGGGAGATAAGACTTGCAT
** * * * * * *
78459697 GCTTTGATCTACTCCACTGCAACTTTAGGGAGATAAGAATCGTAA
1 -CTTCAATCTACTCCACTGTAACTTCAGGGAGATAAGACTTGCAT
* * * * * ** ***
78459742 CTTCAACCTGC-CCTACTGCAACTTAAGGGGGATAAGGTTTGTGG
1 CTTCAATCTACTCC-ACTGTAACTTCAGGGAGATAAGACTTGCAT
* *
78459786 CTTCAATCTGCTTCACTGTAACTTCAGGGAGATAAGACTTGCTAT
1 CTTCAATCTACTCCACTGTAACTTCAGGGAGATAAGACTTGC-AT
* *
78459831 CTTCAGTCTACTCCACTGTAACTTCAGGAAGATAAGACTTGCAT
1 CTTCAATCTACTCCACTGTAACTTCAGGGAGATAAGACTTGCAT
* * *
78459875 CTTCAATCTTCTCCACTATAACTTTAGGGAGATAAG
1 CTTCAATCTACTCCACTGTAACTTCAGGGAGATAAG
78459911 GTTTGTGACT
Statistics
Matches: 236, Mismatches: 57, Indels: 17
0.76 0.18 0.05
Matches are distributed among these distances:
43 3 0.01
44 160 0.68
45 72 0.31
46 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (44 bp):
CTTCAATCTACTCCACTGTAACTTCAGGGAGATAAGACTTGCAT
Found at i:78460033 original size:88 final size:88
Alignment explanation
Indices: 78459927--78460351 Score: 552
Period size: 88 Copynumber: 4.8 Consensus size: 88
78459917 GACTTCAATC
*
78459927 GCTCCAATGCCATGTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTTCGCTGAAACTTCAAGGA
1 GCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTTCGCTGAAACTTCAAGGA
* * *
78459992 GATACGAACTGTGGCTTAGAGGA
66 GATACGAACTATGGCTTCGAGCA
* * * * *
78460015 GATCCAATGCCATTTCAGGGAGAAGGGATTTGTAGCCTCGATCTACTCCGATGAAACTTCAAGGA
1 GCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTTCGCTGAAACTTCAAGGA
*
78460080 GATACGAACTATGGCTTCGAGCC
66 GATACGAACTATGGCTTCGAGCA
* * * *
78460103 GCTTCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTAAAACTTCAAGGA
1 GCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTTCGCTGAAACTTCAAGGA
*
78460168 GATACGAACTGTGGCTTCGAGCCA
66 GATACGAACTATGGCTTCGAG-CA
* *
78460192 -CTCCAATGCCATTTCAGGGAGAAGAGATTTGTAACTTCGATCTAC-TCTGCT-AGAACTTCAAA
1 GCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTTC-GCTGA-AACTTCAAG
* * *
78460254 GAGATACGTATTATGGCTTCGAGCC
64 GAGATACGAACTATGGCTTCGAGCA
* ** * * *
78460279 GCTCTAATTTCATTTCAGGGAGAAGAGATTTGTACCTTCGATCTAC-TCTGCTGGAACTTCAAAG
1 GCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTTC-GCTGAAACTTCAAGG
78460343 AGATACGAA
65 AGATACGAA
78460352 TTGTTGATTT
Statistics
Matches: 300, Mismatches: 32, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
87 3 0.01
88 296 0.99
89 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (88 bp):
GCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTTCGCTGAAACTTCAAGGA
GATACGAACTATGGCTTCGAGCA
Found at i:78460230 original size:44 final size:44
Alignment explanation
Indices: 78460017--78460231 Score: 125
Period size: 44 Copynumber: 4.9 Consensus size: 44
78460007 TTAGAGGAGA
* * * *
78460017 TCCAATGCCATTTCAGGGAGAAGGGATTTGTAGCCTCGATCTAC
1 TCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGAGCCAC
* ** * * * *
78460061 TCCGATGAAACTTCAAGGAGATACGA-ACTATG--GCTTCGAGCCGC
1 TCCAATGCCATTTCAGGGAGA-A-GAGA-TTTGTAGCTTCGAGCCAC
* * * *
78460105 TTCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTAC
1 TCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGAGCCAC
** *** * * * *
78460149 TCCGCTAAAACTTCAAGGAGATACGA-A-CTGTGGCTTCGAGCCAC
1 TCCAATGCCATTTCAGGGAGA-A-GAGATTTGTAGCTTCGAGCCAC
*
78460193 TCCAATGCCATTTCAGGGAGAAGAGATTTGTAACTTCGA
1 TCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGA
78460232 TCTACTCTGC
Statistics
Matches: 116, Mismatches: 45, Indels: 20
0.64 0.25 0.11
Matches are distributed among these distances:
42 7 0.06
43 4 0.03
44 95 0.82
45 4 0.03
46 6 0.05
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (44 bp):
TCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGAGCCAC
Found at i:78460415 original size:44 final size:44
Alignment explanation
Indices: 78460367--78461188 Score: 280
Period size: 44 Copynumber: 18.9 Consensus size: 44
78460357 GATTTCAACT
**
78460367 TGCTCCACTACTGCTTAGGGAGATAAGATTTGTTATCTTTGATC
1 TGCTCCACTACTGCTTAGGGAGATAAGATTTGCAATCTTTGATC
** * * ** *
78460411 TGCTCCACTACTTATTAGGGAGATAATATCTATAATCTTT-AGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATTTGCAATCTTTGA-TC
* * * * * **
78460455 TACTCCACTACTTCTTAGGGAGATAGGATGGTG---GCTTAAATC
1 TGCTCCACTACTGCTTAGGGAGATAAGAT-TTGCAATCTTTGATC
* * * * ** *
78460497 TGCTCCATTACTGCTTAGAGAGACAAGATTCGCCGTCTTCGATC
1 TGCTCCACTACTGCTTAGGGAGATAAGATTTGCAATCTTTGATC
* * * *
78460541 TGCTCCACTACTGCTTAGGGAGATAAGATCTACAATC-TTCAGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATTTGCAATCTTTGA-TC
* * * * * **
78460585 TACTCCACTACTACTTAGGGAGATAGGATGGTG---GCTTAAATC
1 TGCTCCACTACTGCTTAGGGAGATAAGAT-TTGCAATCTTTGATC
* * ** ** *
78460627 TGCTCCACCACTACTTAGGGAGATAAGATTCACTGTCTTCGATC
1 TGCTCCACTACTGCTTAGGGAGATAAGATTTGCAATCTTTGATC
* * * *
78460671 TGCTCCACTACTGCTTAGGGAGATAAGATCTACAATC-TTCAGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATTTGCAATCTTTGA-TC
** * * * **
78460715 CACTCCACTACTGCTTAAGGAGATAAGA--TGGAAGCTTCAATC
1 TGCTCCACTACTGCTTAGGGAGATAAGATTTGCAATCTTTGATC
* *
78460757 TGCTCCACTACTGCTTAGGGAGATAAGATTTGTAAT-TTCT-AGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATTTGCAATCTT-TGA-TC
* * ** ** ** *
78460801 TGTTACC-CTACTGCTTATGGG-GTTAAGGCTCACTGTCTTCGATC
1 TGCT-CCACTACTGCTTA-GGGAGATAAGATTTGCAATCTTTGATC
* * ** * *
78460845 TGCTCCGCTACTGCTTAGGGAGATAAGATCTATAAT-TTTCAGGC
1 TGCTCCACTACTGCTTAGGGAGATAAGATTTGCAATCTTTGA-TC
* * * * ***** * *
78460889 TGTTACC-CTACTACTTAGGGGGTTAAGGCCCACCATCTTCGATC
1 TGCT-CCACTACTGCTTAGGGAGATAAGATTTGCAATCTTTGATC
* * * * *
78460933 TGCTTC-CTATTGCTTAGGGTGATAAGATTTGTAAT-TTCT-AGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATTTGCAATCTT-TGA-TC
** * * * * *
78460976 TATTACC-CTACTGCTTAGAGG-GTTAA-AGCTCGTC-GTCTTTGATT
1 TGCT-CCACTACTGCTTAG-GGAGATAAGA-TTTG-CAATCTTTGATC
* * * *
78461020 TACTCTACTACTGCTTAGGGAGATAAGATTTGTAATC-TTCATAC
1 TGCTCCACTACTGCTTAGGGAGATAAGATTTGCAATCTTTGAT-C
* * * * **
78461064 TACTCCAC-ACTGCTTAGGGAGATAGGATGGTG---GCTTAAATC
1 TGCTCCACTACTGCTTAGGGAGATAAGAT-TTGCAATCTTTGATC
* * * * **
78461105 TGCTCCACTATTGCTTAGAGAGACAAGATTCGCCGTCTTTGATC
1 TGCTCCACTACTGCTTAGGGAGATAAGATTTGCAATCTTTGATC
* *
78461149 TGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTT
1 TGCTCCACTACTGCTTAGGGAGATAAGATTTGCAATCTTT
78461189 AGCCTGTTCC
Statistics
Matches: 557, Mismatches: 175, Indels: 92
0.68 0.21 0.11
Matches are distributed among these distances:
41 11 0.02
42 107 0.19
43 70 0.13
44 348 0.62
45 21 0.04
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (44 bp):
TGCTCCACTACTGCTTAGGGAGATAAGATTTGCAATCTTTGATC
Found at i:78460541 original size:130 final size:130
Alignment explanation
Indices: 78460367--78460786 Score: 624
Period size: 130 Copynumber: 3.2 Consensus size: 130
78460357 GATTTCAACT
* * * * **
78460367 TGCTCCACTACTGCTTAGGGAGATAAGATTTGTTATCTTTGATCTGCTCCACTACTTATTAGGGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAGGGA
* * * *
78460432 GATAATATCTATAATCTTTAGCCTACTCCACTACTTCTTAGGGAGATAGGATGGTGGCTTAAATC
66 GATAAGATCTACAATCTTCAGCCTACTCCACTACTACTTAGGGAGATAGGATGGTGGCTTAAATC
* * * *
78460497 TGCTCCATTACTGCTTAGAGAGACAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAGGGA
78460562 GATAAGATCTACAATCTTCAGCCTACTCCACTACTACTTAGGGAGATAGGATGGTGGCTTAAATC
66 GATAAGATCTACAATCTTCAGCCTACTCCACTACTACTTAGGGAGATAGGATGGTGGCTTAAATC
* * *
78460627 TGCTCCACCACTACTTAGGGAGATAAGATTCACTGTCTTCGATCTGCTCCACTACTGCTTAGGGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAGGGA
* * * * ** *
78460692 GATAAGATCTACAATCTTCAGCCCACTCCACTACTGCTTAAGGAGATAAGATGGAAGCTTCAATC
66 GATAAGATCTACAATCTTCAGCCTACTCCACTACTACTTAGGGAGATAGGATGGTGGCTTAAATC
78460757 TGCTCCACTACTGCTTAGGGAGATAAGATT
1 TGCTCCACTACTGCTTAGGGAGATAAGATT
78460787 TGTAATTTCT
Statistics
Matches: 260, Mismatches: 30, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
130 260 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (130 bp):
TGCTCCACTACTGCTTAGGGAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAGGGA
GATAAGATCTACAATCTTCAGCCTACTCCACTACTACTTAGGGAGATAGGATGGTGGCTTAAATC
Found at i:78460758 original size:86 final size:86
Alignment explanation
Indices: 78460369--78461177 Score: 324
Period size: 86 Copynumber: 9.3 Consensus size: 86
78460359 TTTCAACTTG
** * ** **
78460369 CTCCACTACTGCTTAGGGAGATAAGATTTGTTATCTTTGATCTGCTCCACTACTTATTAGGGAGA
1 CTCCACTACTGCTTAGGGAGATAAGA--TGCAAGCTTCAATCTGCTCCACTACTGCTTAGGGAGA
* * *
78460434 TAATATCTATAATCTTTAGCCTA
64 TAAGATCTACAATCTTCAGCCTA
* * *** * * * *
78460457 CTCCACTACTTCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCATTACTGCTTAGAGAGACA
1 CTCCACTACTGCTTAGGGAGATAAGATGCAAGCTTCAATCTGCTCCACTACTGCTTAGGGAGATA
* ** * *
78460522 AGAT-TCGCCGTCTTC-GATCTG
66 AGATCT-ACAATCTTCAG-CCTA
* * ** * *
78460543 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTACTCCACTACTACTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGATAAGA--TGCAAGCTTCAATCTGCTCCACTACTGCTTAGGGAGA
* * ** * ** *
78460608 TAGGATGGT---GGCTTAAATCTG
64 TAAGAT-CTACAATCTTCAGCCTA
* * * * *
78460629 CTCCACCACTACTTAGGGAGATAAGATTCACTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGATAAGATGCA-AG-CTTCAATCTGCTCCACTACTGCTTAGGGAGA
*
78460694 TAAGATCTACAATCTTCAGCCCA
64 TAAGATCTACAATCTTCAGCCTA
* *
78460717 CTCCACTACTGCTTAAGGAGATAAGATGGAAGCTTCAATCTGCTCCACTACTGCTTAGGGAGATA
1 CTCCACTACTGCTTAGGGAGATAAGATGCAAGCTTCAATCTGCTCCACTACTGCTTAGGGAGATA
* ** *
78460782 AGATTTGTAAT-TTCTAGCCTG
66 AGATCTACAATCTTC-AGCCTA
* * * * * *
78460803 TTACC-CTACTGCTTATGGG-GTTAAGGCT-CACTGTCTTCGATCTGCTCCGCTACTGCTTAGGG
1 CT-CCACTACTGCTTA-GGGAGATAA-GATGCA-AG-CTTCAATCTGCTCCACTACTGCTTAGGG
* * * *
78460865 AGATAAGATCTATAATTTTCAGGCTG
61 AGATAAGATCTACAATCTTCAGCCTA
* * * * *** * * * * *
78460891 TTACC-CTACTACTTAGGGGGTTAAGGCCCACCATCTTCGATCTGCTTC-CTATTGCTTAGGGTG
1 CT-CCACTACTGCTTAGGGAGATAAGATGCA--AGCTTCAATCTGCTCCACTACTGCTTAGGGAG
* **
78460954 ATAAGATTTGTAAT-TTCTAGCCTA
63 ATAAGATCTACAATCTTC-AGCCTA
* * * ** * * *
78460978 TTACC-CTACTGCTTAGAGG-GTTAAAGCTCGTC--GTCTTTGATTTACTCTACTACTGCTTAGG
1 CT-CCACTACTGCTTAG-GGAGAT-AAGAT-G-CAAG-CTTCAATCTGCTCCACTACTGCTTAGG
* ** **
78461039 GAGATAAGATTTGTAATCTTCATACTA
60 GAGATAAGATCTACAATCTTCAGCCTA
* *** * * * *
78461066 CTCCAC-ACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTATTGCTTAGAGAGACA
1 CTCCACTACTGCTTAGGGAGATAAGATGCAAGCTTCAATCTGCTCCACTACTGCTTAGGGAGATA
* ** * * *
78461130 AGAT-TCGCCGTCTT-TGATCTG
66 AGATCT-ACAATCTTCAG-CCTA
78461151 CTCCACTACTGCTTAGGGAGATAAGAT
1 CTCCACTACTGCTTAGGGAGATAAGAT
78461178 CTACAATCTT
Statistics
Matches: 556, Mismatches: 128, Indels: 76
0.73 0.17 0.10
Matches are distributed among these distances:
84 4 0.01
85 49 0.09
86 213 0.38
87 81 0.15
88 200 0.36
89 7 0.01
90 2 0.00
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.32
Consensus pattern (86 bp):
CTCCACTACTGCTTAGGGAGATAAGATGCAAGCTTCAATCTGCTCCACTACTGCTTAGGGAGATA
AGATCTACAATCTTCAGCCTA
Found at i:78460871 original size:88 final size:87
Alignment explanation
Indices: 78460656--78461055 Score: 393
Period size: 88 Copynumber: 4.6 Consensus size: 87
78460646 GAGATAAGAT
* ** * *
78460656 TCACTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTC-AGCCCACT-
1 TCACTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAAT-TTCTAGCCTATTA
* * *
78460719 CCACTACTGCTTAAGGAGATAA-GA
65 CC-CTACTGCTT-AGGGGTTAAGGC
* * * *
78460743 TGGA-AG-CTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTCTAGCCTGTTA
1 T-CACTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTCTAGCCTATTA
78460806 CCCTACTGCTTATGGGGTTAAGGC
65 CCCTACTGCTTA-GGGGTTAAGGC
* * * * *
78460830 TCACTGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTATAATTT-TCAGGCTGTTA
1 TCACTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTCT-AGCCTATTA
*
78460894 CCCTACTACTTAGGGGGTTAAGGC
65 CCCTACTGCTTA-GGGGTTAAGGC
* ** * * *
78460918 CCACCATCTTCGATCTGCTTC-CTATTGCTTAGGGTGATAAGATTTGTAATTTCTAGCCTATTAC
1 TCACTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTCTAGCCTATTAC
*
78460982 CCTACTGCTTAGAGGGTTAAAGC
66 CCTACTGCTTAG-GGGTTAAGGC
* * * * *
78461005 TC-GTCGTCTTTGATTTACTCTACTACTGCTTAGGGAGATAAGATTTGTAAT
1 TCACT-GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAAT
78461056 CTTCATACTA
Statistics
Matches: 257, Mismatches: 44, Indels: 23
0.79 0.14 0.07
Matches are distributed among these distances:
85 4 0.02
86 62 0.24
87 73 0.28
88 118 0.46
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.34
Consensus pattern (87 bp):
TCACTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTCTAGCCTATTAC
CCTACTGCTTAGGGGTTAAGGC
Found at i:78460990 original size:175 final size:174
Alignment explanation
Indices: 78460656--78461134 Score: 473
Period size: 175 Copynumber: 2.8 Consensus size: 174
78460646 GAGATAAGAT
78460656 TCACTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCCACTCC
1 TCACTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCCACTCC
* ***
78460721 ACTACTGCTTAAGGAGATAAGATGGAAGCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGAT
66 ACTACTACTTAAGGAGATAAGACCCAAGCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGAT
* *
78460786 TTGTAATTTCTAGCCTGTTACCCTACTGCTTATG-GGGTTAAGGC
131 TTGTAATTTCTAGCCTATTACCCTACTGCTTA-GAGGGTTAAAGC
* * * * ***
78460830 TCACTGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTATAATTTTCAGGCTGTTAC
1 TCACTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCCACT-C
* * * * * * * * *
78460895 C-CTACTACTTAGGGGGTTAAGGCCCACCATCTTCGATCTGCTTC-CTATTGCTTAGGGTGATAA
65 CACTACTACTTAAGGAGATAAGACCCA--AGCTTCAATCTGCTCCACTACTGCTTAGGGAGATAA
78460958 GATTTGTAATTTCTAGCCTATTACCCTACTGCTTAGAGGGTTAAAGC
128 GATTTGTAATTTCTAGCCTATTACCCTACTGCTTAGAGGGTTAAAGC
* * * * * * ** ** *
78461005 TC-GTCGTCTTTGATTTACTCTACTACTGCTTAGGGAGATAAGATTTGTAATCTTCATACTACTC
1 TCACT-GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCCACTC
* * * ***** * * * *
78461069 CAC-ACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTATTGCTTAGAGAGACAAGA
65 CACTACTACTTAAGGAGATAAGACCCAAGCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGA
78461133 TT
130 TT
78461135 CGCCGTCTTT
Statistics
Matches: 246, Mismatches: 52, Indels: 15
0.79 0.17 0.05
Matches are distributed among these distances:
172 11 0.04
173 20 0.08
174 91 0.37
175 111 0.45
176 13 0.05
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.33
Consensus pattern (174 bp):
TCACTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCCACTCC
ACTACTACTTAAGGAGATAAGACCCAAGCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGAT
TTGTAATTTCTAGCCTATTACCCTACTGCTTAGAGGGTTAAAGC
Found at i:78464754 original size:17 final size:17
Alignment explanation
Indices: 78464732--78464764 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
78464722 GATATGATAC
78464732 TAAAATTAT-TAAAAAAT
1 TAAAA-TATCTAAAAAAT
78464749 TAAAATATCTAAAAAA
1 TAAAATATCTAAAAAA
78464765 ATTCTGGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATCTAAAAAAT
Found at i:78465057 original size:22 final size:21
Alignment explanation
Indices: 78465022--78465097 Score: 59
Period size: 22 Copynumber: 3.7 Consensus size: 21
78465012 AAAAGGTTTC
* * *
78465022 TACAAATTAAATCTCTATGAT
1 TACAAATCATATCTCTAAGAT
78465043 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
78465066 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
78465085 TGC-AATCATATCT
1 TACAAATCATATCT
78465098 AAGATTGTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 9 0.20
ACGTcount: A:0.39, C:0.17, G:0.07, T:0.37
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:78465114 original size:35 final size:37
Alignment explanation
Indices: 78465051--78465148 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
78465041 ATTACAAAAT
78465051 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
78465087 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
78465122 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
78465149 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:78465156 original size:17 final size:19
Alignment explanation
Indices: 78465058--78465148 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
78465048 AATCATATCT
78465058 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
78465077 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
78465095 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
78465112 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
78465131 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
78465149 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:78466512 original size:46 final size:46
Alignment explanation
Indices: 78466459--78466629 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
78466449 TATTTGGGCA
78466459 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
78466505 TCCGAACTC-----GTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
**
78466547 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
78466593 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78466630 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 12, Indels: 24
0.74 0.09 0.18
Matches are distributed among these distances:
38 4 0.04
40 2 0.02
41 17 0.17
42 11 0.11
46 44 0.44
47 17 0.17
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:78469562 original size:15 final size:15
Alignment explanation
Indices: 78469542--78469610 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
78469532 GTATCTTGGG
78469542 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
78469557 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
78469572 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
78469587 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
78469602 TTTCTTTAT
1 TTTCTTTAT
78469611 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:78469611 original size:30 final size:30
Alignment explanation
Indices: 78469533--78469620 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
78469523 CATAGTATCG
* * * *
78469533 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
78469563 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
78469593 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
78469621 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:78472058 original size:46 final size:46
Alignment explanation
Indices: 78472005--78472180 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
78471995 TATTTGGGCA
78472005 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
78472051 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
78472098 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
78472144 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78472181 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:78472160 original size:93 final size:93
Alignment explanation
Indices: 78472001--78472172 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
78471991 GGGATATTTG
* *
78472001 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
78472066 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
78472094 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
78472159 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
78472173 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:78473626 original size:21 final size:21
Alignment explanation
Indices: 78473587--78473627 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
78473577 TTGGACTTCG
* **
78473587 TTTTTTTTTTTGGGTTTATTA
1 TTTTTGTTTTTGGACTTATTA
78473608 TTTTTGTTTTTGGACTTATT
1 TTTTTGTTTTTGGACTTATT
78473628 TTTGGGCTCG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.02, G:0.15, T:0.73
Consensus pattern (21 bp):
TTTTTGTTTTTGGACTTATTA
Found at i:78473875 original size:45 final size:46
Alignment explanation
Indices: 78473849--78473973 Score: 153
Period size: 46 Copynumber: 2.7 Consensus size: 46
78473839 TTTCCGATCT
78473849 AATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGTCTA
1 AATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGTCTA
* * * * *
78473895 AATACAGGGATGCCAAATCTATTATCTCCGATTTGCTCCCCGTCT-
1 AATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGTCTA
* * * * *
78473940 AATACAGAAATGCCAAATTTGTCATCTTGGATCT
1 AATACAGAGACGCCAAATCTGTTATCTTCGATCT
78473974 TCTTCGATGT
Statistics
Matches: 66, Mismatches: 13, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
45 26 0.39
46 40 0.61
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (46 bp):
AATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGTCTA
Found at i:78473920 original size:46 final size:45
Alignment explanation
Indices: 78473846--78473957 Score: 161
Period size: 46 Copynumber: 2.5 Consensus size: 45
78473836 CTGTTTCCGA
* * *
78473846 TCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCG
1 TCTAATACAGAGATGCCAAATCTATTATCTCCGATCTGCTCCCCG
* *
78473891 TCTAAATACAGGGATGCCAAATCTATTATCTCCGATTTGCTCCCCG
1 TCT-AATACAGAGATGCCAAATCTATTATCTCCGATCTGCTCCCCG
*
78473937 TCTAATACAGAAATGCCAAAT
1 TCTAATACAGAGATGCCAAAT
78473958 TTGTCATCTT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
45 19 0.32
46 40 0.68
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (45 bp):
TCTAATACAGAGATGCCAAATCTATTATCTCCGATCTGCTCCCCG
Found at i:78474119 original size:78 final size:78
Alignment explanation
Indices: 78473990--78474284 Score: 448
Period size: 78 Copynumber: 3.8 Consensus size: 78
78473980 ATGTAAACAC
*
78473990 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCTGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
78474055 TGGATCTGCTTCA
66 TGGATCTGCTTCA
*
78474068 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATC
78474132 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * *
78474146 ATGAAGGTTAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
78474211 TAGATCTGCTTCA
66 TGGATCTGCTTCA
* * * ** * **
78474224 ATGAAGGTCAAATCTACTATGTCTTCGATCTGCTCTTCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATC
78474285 TGTTTCTTCG
Statistics
Matches: 199, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
77 1 0.01
78 196 0.98
79 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:78474494 original size:78 final size:78
Alignment explanation
Indices: 78474365--78474727 Score: 550
Period size: 78 Copynumber: 4.7 Consensus size: 78
78474355 GTGAAAGCCA
*
78474365 AATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCT
1 AATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTAGATCTGCT
*
78474430 TTAATGAAGGTCC
66 TCAATGAAGGTCC
* *
78474443 AATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGATATGCCAAATCATCTTAGATCTGCT
1 AATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTAGATCTGCT
*
78474508 TCAATGAAGGTCA
66 TCAATGAAGGTCC
* *
78474521 AATCTGCTGTGACTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTAGATCTGCT
1 AATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTAGATCTGCT
*
78474586 TCAATAAAGGT-C
66 TCAATGAAGGTCC
* * *
78474598 AGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGATATGCCAAATCATCTTGGATCTGC
1 A-ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTAGATCTGC
*
78474663 TTCAATGAA-GTTC
65 TTCAATGAAGGTCC
* * **
78474676 AGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATC
1 A-ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
78474728 TGTTTCTTCG
Statistics
Matches: 262, Mismatches: 21, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
77 3 0.01
78 259 0.99
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.32
Consensus pattern (78 bp):
AATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTAGATCTGCT
TCAATGAAGGTCC
Found at i:78474646 original size:365 final size:368
Alignment explanation
Indices: 78473873--78474649 Score: 1166
Period size: 365 Copynumber: 2.1 Consensus size: 368
78473863 AAATCTGTTA
* *
78473873 TCTTCGATCTGCTCCCCGTCTAAATACAGGGATGCCAAATCTATTATCTCCGATTTGCTCCCCGT
1 TCTTCGATCTGCTCCCCGTCT-AATACAGAGATGCCAAATCTATTATCTCCGATTTGCTCCCCGA
* * * * * *
78473938 CTAATACAGAAATGCCAAATTTGTCATCTTGGATCTTCTTCGATGTAAACACATGAAGGTCAGAT
65 CTAATACAGAAATGCCAAA--T-TCATCTTAGATCTGCTTCGACGTAAACACATGAAAGCCAAAT
*
78474003 CTGCTATGTCTTCGATCTACTCCCTGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCA
127 CTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCA
78474068 ATGAAGGTCCAATCTGTTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
192 ATGAAGGTCCAATCTGTTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
* * * *
78474133 TGGATCTGCTTCAATGAAGGTTAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGA
257 TAGATCTGCTTCAATGAAGGTCAAATCTGCTGTGACTTCGATCTGCTCCCCGTCTAATACAGAGA
*
78474198 TGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAAATCTACTATG
322 TGCCAAATCATCTTAGATCTGCTTCAATAAAGGTCAAATCTACTATG
** * ** * * * * *
78474245 TCTTCGATCTGCTCTTCGTCGAATATGGAGATGCCAAATCTGTT-TCTTCGATTTGTTCTCTGAC
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTATTATCTCCGATTTGCTCCCCGAC
* * *
78474309 -AGTACAGAGATGCCAAA-TCATCTTAGATCTGCTTC-AGCGTAAACACGTGAAAGCCAAATCTG
66 TAATACAGAAATGCCAAATTCATCTTAGATCTGCTTCGA-CGTAAACACATGAAAGCCAAATCTG
* *
78474371 CTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTTAATG
130 CTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATG
* *
78474436 AAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGATATGCCAAATCATCTTAG
195 AAGGTCCAATCTGTTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCTTAG
78474501 ATCTGCTTCAATGAAGGTCAAATCTGCTGTGACTTCGATCTGCTCCCCGTCTAATACAGAGATGC
260 ATCTGCTTCAATGAAGGTCAAATCTGCTGTGACTTCGATCTGCTCCCCGTCTAATACAGAGATGC
* * *
78474566 CAAATCATCTTAGATCTGCTTCAATAAAGGTCAGATCTGCTGTG
325 CAAATCATCTTAGATCTGCTTCAATAAAGGTCAAATCTACTATG
*
78474610 TCTTCGATCTGCTCCCCGTCTAATACAGATATGCCAAATC
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
78474650 ATCTTGGATC
Statistics
Matches: 364, Mismatches: 40, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
364 1 0.00
365 296 0.81
369 15 0.04
370 15 0.04
371 19 0.05
372 18 0.05
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (368 bp):
TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTATTATCTCCGATTTGCTCCCCGAC
TAATACAGAAATGCCAAATTCATCTTAGATCTGCTTCGACGTAAACACATGAAAGCCAAATCTGC
TATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
AGGTCCAATCTGTTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCTTAGA
TCTGCTTCAATGAAGGTCAAATCTGCTGTGACTTCGATCTGCTCCCCGTCTAATACAGAGATGCC
AAATCATCTTAGATCTGCTTCAATAAAGGTCAAATCTACTATG
Found at i:78474816 original size:443 final size:442
Alignment explanation
Indices: 78473990--78474873 Score: 1448
Period size: 443 Copynumber: 2.0 Consensus size: 442
78473980 ATGTAAACAC
*
78473990 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCTGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
* * * *
78474055 TGGATCTGCTTCAATGAAGGTCCAATCTGTTATGTCTTCGATCTACTCCCCGTCTAATACAGAGA
66 TAGATCTGCTTCAATGAAGGTCAAATCTGCTATGACTTCGATCTACTCCCCGTCTAATACAGAGA
* * *
78474120 TGCCAAATCATCTTGGATCTGCTTCAATGAAGGTTAGATCTGCTGTGTCTTCGATCTGCTCCCCG
131 TGCCAAATCATCTTAGATCTGCTTCAATAAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCG
78474185 TCTAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAAATCTACTATGTCTTC
196 TCTAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAAATCTACTATGTCTTC
* *
78474250 GATCTGCTCTTCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAGTACA
261 GATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAGTACA
* *
78474315 GAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTT
326 GAGATGCCAAATCATCTTAGATCTACTTCAGCATAAACACGTGAAAGCCAAATCTGCTATGTCTT
* * * *
78474380 CGATCTGCTCCCCGTCTAATAC-AGAGATGCCAAATCATCTTGGATCTGCTTTA
391 CAATATGCTCCCCGTC-AACACAAG-GATGCCAAATCATCTTGGATCTACTTTA
* * *
78474433 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGATATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATC
* *
78474497 TTAGATCTGCTTCAATGAAGGTCAAATCTGCTGTGACTTCGATCTGCTCCCCGTCTAATACAGAG
65 TTAGATCTGCTTCAATGAAGGTCAAATCTGCTATGACTTCGATCTACTCCCCGTCTAATACAGAG
78474562 ATGCCAAATCATCTTAGATCTGCTTCAATAAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCC
130 ATGCCAAATCATCTTAGATCTGCTTCAATAAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCC
* * * * *
78474627 GTCTAATACAGATATGCCAAATCATCTTGGATCTGCTTCAATGAAGTTCAGATCTGCTATGTCTT
195 GTCTAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAAATCTACTATGTCTT
78474692 CGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAGTAC
260 CGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAGTAC
*
78474757 AGAGATGCCAAATCATCTTAGATCTACTTCAGCATAAACACGTGAAAGTCAAATCTGCTATGTCT
325 AGAGATGCCAAATCATCTTAGATCTACTTCAGCATAAACACGTGAAAGCCAAATCTGCTATGTCT
*** *
78474822 TCAATATGCTCTTTGTCAACGCAAGGATGCCAAATCATCTTGGATCTACTTT
390 TCAATATGCTCCCCGTCAACACAAGGATGCCAAATCATCTTGGATCTACTTT
78474874 GATGTGAAGA
Statistics
Matches: 408, Mismatches: 31, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
442 29 0.07
443 377 0.92
444 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (442 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
TAGATCTGCTTCAATGAAGGTCAAATCTGCTATGACTTCGATCTACTCCCCGTCTAATACAGAGA
TGCCAAATCATCTTAGATCTGCTTCAATAAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCG
TCTAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAAATCTACTATGTCTTC
GATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAGTACA
GAGATGCCAAATCATCTTAGATCTACTTCAGCATAAACACGTGAAAGCCAAATCTGCTATGTCTT
CAATATGCTCCCCGTCAACACAAGGATGCCAAATCATCTTGGATCTACTTTA
Found at i:78475573 original size:52 final size:52
Alignment explanation
Indices: 78475516--78475618 Score: 206
Period size: 52 Copynumber: 2.0 Consensus size: 52
78475506 TGAGAAAAAC
78475516 TTCATTTGTGAAAATTATTTAGTTCATCTATCATTATTTTAATGCAACATAT
1 TTCATTTGTGAAAATTATTTAGTTCATCTATCATTATTTTAATGCAACATAT
78475568 TTCATTTGTGAAAATTATTTAGTTCATCTATCATTATTTTAATGCAACATA
1 TTCATTTGTGAAAATTATTTAGTTCATCTATCATTATTTTAATGCAACATA
78475619 CTTTAAGAAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.33, C:0.12, G:0.08, T:0.48
Consensus pattern (52 bp):
TTCATTTGTGAAAATTATTTAGTTCATCTATCATTATTTTAATGCAACATAT
Found at i:78483356 original size:17 final size:18
Alignment explanation
Indices: 78483334--78483368 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
78483324 GATATGATAC
*
78483334 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
78483351 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
78483369 CTGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:78483658 original size:22 final size:21
Alignment explanation
Indices: 78483623--78483698 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
78483613 AAAAGGTATC
* *
78483623 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
78483644 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
78483667 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
78483686 TGC-AATCATATCT
1 TACAAATCATATCT
78483699 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:78483715 original size:35 final size:37
Alignment explanation
Indices: 78483652--78483749 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
78483642 ATTACAAAAT
78483652 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
78483688 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
78483723 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
78483750 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:78483757 original size:17 final size:19
Alignment explanation
Indices: 78483659--78483749 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
78483649 AATCATATCT
78483659 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
78483678 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
78483696 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
78483713 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
78483732 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
78483750 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:78487882 original size:3 final size:3
Alignment explanation
Indices: 78487874--78488109 Score: 151
Period size: 3 Copynumber: 77.3 Consensus size: 3
78487864 GTTTAATAGT
* * * *
78487874 ATA ATA ATA ATA ATA ATA GAAA ATA ATA ATA ATA GAGA ATA ACA GTA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA -ATA ATA ATA ATA
* * *
78487921 CATTA ATA ATA ATA TATG TTA ATA ACA ATA ATA AT- ATA A-A A-A ATA
1 -A-TA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
78487966 GGA-A ATA ATA AT- ATA CTA ATA AGA ATA ATA ATA GGTTA ATA ATA ATA
1 --ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA --ATA ATA ATA ATA
* * * * * *
78488013 ATA GTA ATA ATA ATA ATA ATA ATA ATA ATA ATA CTT GTA GTA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
78488061 ATA ATA AAA ATA GTA ATA ATA ATA TTA AAA ATA ATTA AT- TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA
78488106 ATA A
1 ATA A
78488110 AGTAGCCAAA
Statistics
Matches: 181, Mismatches: 37, Indels: 30
0.73 0.15 0.12
Matches are distributed among these distances:
2 10 0.06
3 155 0.86
4 11 0.06
5 5 0.03
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:78490081 original size:15 final size:15
Alignment explanation
Indices: 78490059--78490100 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
78490049 AAGAAAAGAA
78490059 AAAGAGAGAAAGACGGG
1 AAAGAGAG-AAGA-GGG
78490076 AAAGAGAGAAGAGGG
1 AAAGAGAGAAGAGGG
*
78490091 AAAGAAAGAA
1 AAAGAGAGAA
78490101 AGAAAAAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 12 0.50
16 4 0.17
17 8 0.33
ACGTcount: A:0.60, C:0.02, G:0.38, T:0.00
Consensus pattern (15 bp):
AAAGAGAGAAGAGGG
Found at i:78490767 original size:2 final size:2
Alignment explanation
Indices: 78490760--78490784 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
78490750 ACTATTTGGC
78490760 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
78490785 TAACAAAGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:78495400 original size:2 final size:2
Alignment explanation
Indices: 78495395--78495430 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
78495385 TACTTAAAAA
78495395 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78495431 TCGAATTTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:78503039 original size:45 final size:45
Alignment explanation
Indices: 78502954--78503081 Score: 188
Period size: 45 Copynumber: 2.9 Consensus size: 45
78502944 CCGAATTCAT
* * * *
78502954 TCACCGGCATT-TCGCCTGCTAGGCTC-GAGGCCTGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATAAC
*
78502997 TCACCGGTATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATAAC
*
78503042 TCACCGGCATTATAGCTTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
78503082 GTACTATACA
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
43 10 0.13
44 14 0.18
45 52 0.68
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATAAC
Found at i:78503558 original size:2 final size:2
Alignment explanation
Indices: 78503546--78503580 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
78503536 TACTTCAAAA
78503546 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78503581 TTGACTTTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:78507502 original size:55 final size:53
Alignment explanation
Indices: 78507378--78507771 Score: 360
Period size: 55 Copynumber: 7.5 Consensus size: 53
78507368 TTACCATTGT
* * * *
78507378 CATGTCTTGACATGGT-TTACATGGTATCCTTGCCTTAT-GAACTTACCAACGC
1 CATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAATGC
* * *
78507430 CATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGTAACTCATCAATGC
1 CATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAATGC
* *
78507485 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATGC
1 CATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAATGC
* * *
78507538 CATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATTAATGC
1 CATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAATGC
* * * *
78507593 CATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGC
1 CATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAATGC
* * *** *
78507647 CATGCCTTGGCATGGTCTTACATGATA---T-CCTTATCTTAC-CA--AATGT
1 CATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAATGC
** * *
78507693 CATGTTCC-AAACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGC
1 CATG--CCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAATGC
* * *
78507748 AATGTCTTGGCATGGTCTTACATG
1 CATGCCTTGACATGGTCTTACATG
78507772 ATATCCTTAT
Statistics
Matches: 274, Mismatches: 48, Indels: 38
0.76 0.13 0.11
Matches are distributed among these distances:
46 8 0.03
47 16 0.06
48 3 0.01
49 8 0.03
50 1 0.00
51 1 0.00
52 25 0.09
53 65 0.24
54 50 0.18
55 93 0.34
56 4 0.01
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (53 bp):
CATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAATGC
Found at i:78507540 original size:108 final size:108
Alignment explanation
Indices: 78507378--78507771 Score: 531
Period size: 108 Copynumber: 3.7 Consensus size: 108
78507368 TTACCATTGT
*
78507378 CATGTCTTGACATGGT-TTACATGGTATCCTTGCCTTAT-GAACTTACCAACGCCATGCCTTGGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTACCAATGCCATGCCTTGGC
78507441 ATGGTCTTACATGGGACCTTTTCCTTATAGTAACTCATCAATGC
66 ATGGTCTTACATGGGACCTTTTCCTTATAGTAACTCAT-AATGC
*
78507485 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTTGGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTACCAATGCCATGCCTTGGC
*
78507549 ATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATTAATGC
66 ATGGTCTTACATGGGACCTTTTCCTTATAGTAACTCA-TAATGC
* * *
78507593 CATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTACCAATGCCATGCCTTGGC
* * * *
78507658 ATGGTCTTACAT--GA---TATCCTTAT-CTTAC-CA-AATGT
66 ATGGTCTTACATGGGACCTTTTCCTTATAGTAACTCATAATGC
*** * * * *
78507693 CATGTTCCAAACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCAATGTCTTGG
1 CATG-TCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTACCAATGCCATGCCTTGG
78507758 CATGGTCTTACATG
65 CATGGTCTTACATG
78507772 ATATCCTTAT
Statistics
Matches: 262, Mismatches: 20, Indels: 15
0.88 0.07 0.05
Matches are distributed among these distances:
100 8 0.03
101 65 0.25
102 2 0.01
103 3 0.01
104 7 0.03
107 18 0.07
108 123 0.47
109 36 0.14
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (108 bp):
CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTACCAATGCCATGCCTTGGC
ATGGTCTTACATGGGACCTTTTCCTTATAGTAACTCATAATGC
Found at i:78507710 original size:47 final size:47
Alignment explanation
Indices: 78507657--78507827 Score: 182
Period size: 47 Copynumber: 3.5 Consensus size: 47
78507647 CATGCCTTGG
78507657 CATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
* * * * ****
78507704 CATGGTCTTACATGGTATCCTTGTCTTA-TAGAACTTATCAATGCAATGTCTTGG
1 CATGGTCTTACATGATATCCTTATCTTACCA-AA--TGTC-ATG---T-TCCAAA
78507758 CATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
*
78507805 CATGGTCTTACATGGTATCCTTA
1 CATGGTCTTACATGATATCCTTA
78507828 ACCGTCAATT
Statistics
Matches: 98, Mismatches: 17, Indels: 18
0.74 0.13 0.14
Matches are distributed among these distances:
46 1 0.01
47 52 0.53
48 1 0.01
49 3 0.03
50 3 0.03
51 3 0.03
52 3 0.03
53 1 0.01
54 30 0.31
55 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
Found at i:78507725 original size:101 final size:104
Alignment explanation
Indices: 78507387--78507826 Score: 488
Period size: 101 Copynumber: 4.2 Consensus size: 104
78507377 TCATGTCTTG
*
78507387 ACATGGT-TTACATGGTATCCTTGCCTTATGAACTTACCAACGCCATGCCTTGGCATGGTCTTAC
1 ACATGGTCTTACATGGTATCCTTGCCTTATGAACTTACCAATGCCATGCCTTGGCATGGTCTTAC
* * ***
78507451 ATGGGACCTTTTCCTTATAGTAACTCATCAATGCCATGTCTTG
66 AT-GGA-C-TATCCTTATACTAACTCAT-AATGCCATGTCCAA
*
78507494 ACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTAC
1 ACATGGTCTTACATGGTATCCTTGCCTTATGAACTTACCAATGCCATGCCTTGGCATGGTCTTAC
* * ***
78507559 ATGGGACCTTTGCCTTATAGTAACTCATTAATGCCATGTCTTG
66 AT-GGA-CTAT-CCTTATACTAACTCA-TAATGCCATGTCCAA
* * *
78507602 ACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTTACCAATGCCATGCCTTGGCATGGTCTTA
* *
78507667 CAT-GA-TATCCTTAT-CTTAC-CA-AATGTCATGTTCCAA
65 CATGGACTATCCTTATACTAACTCATAATGCCATG-TCCAA
* * * *
78507703 ACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCAATGTCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTTACCAATGCCATGCCTTGGCATGGTCTTA
* *
78507768 CAT-GA-TATCCTTAT-CTTAC-CA-AATGTCATGTTCCAA
65 CATGGACTATCCTTATACTAACTCATAATGCCATG-TCCAA
78507804 ACATGGTCTTACATGGTATCCTT
1 ACATGGTCTTACATGGTATCCTT
78507827 AACCGTCAAT
Statistics
Matches: 310, Mismatches: 18, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
100 8 0.03
101 121 0.39
102 2 0.01
103 3 0.01
104 6 0.02
105 2 0.01
107 12 0.04
108 120 0.39
109 36 0.12
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (104 bp):
ACATGGTCTTACATGGTATCCTTGCCTTATGAACTTACCAATGCCATGCCTTGGCATGGTCTTAC
ATGGACTATCCTTATACTAACTCATAATGCCATGTCCAA
Found at i:78512502 original size:22 final size:22
Alignment explanation
Indices: 78512472--78512514 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
78512462 AATTAAATTT
*
78512472 AAAATTTAAAAGAAAAATAATG
1 AAAAATTAAAAGAAAAATAATG
* *
78512494 AAAAATTAAAATAATAATAAT
1 AAAAATTAAAAGAAAAATAAT
78512515 AGGAAAAGAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.26
Consensus pattern (22 bp):
AAAAATTAAAAGAAAAATAATG
Found at i:78514768 original size:18 final size:18
Alignment explanation
Indices: 78514747--78514785 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
78514737 CCTAAATTTG
78514747 ATTTTGATATATTACA-TA
1 ATTTTGA-ATATTACATTA
*
78514765 ATTTTTAATATTACATTA
1 ATTTTGAATATTACATTA
78514783 ATT
1 ATT
78514786 ATTACGAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (18 bp):
ATTTTGAATATTACATTA
Found at i:78519101 original size:32 final size:32
Alignment explanation
Indices: 78519008--78519107 Score: 100
Period size: 32 Copynumber: 3.2 Consensus size: 32
78518998 TTACTCTTAG
* **
78519008 TATACATTATTGATTTCCTATTATTTTATGTA
1 TATATATTATTGATTTTATATTATTTTATGTA
* * *
78519040 AATAT-TTCCTT--TTTTA-ATTTTTTTATGTA
1 TATATATT-ATTGATTTTATATTATTTTATGTA
78519069 TATATATTATTGATTTTATATTATTTTATGTA
1 TATATATTATTGATTTTATATTATTTTATGTA
*
78519101 TGTATAT
1 TATATAT
78519108 CTTCTTCTAA
Statistics
Matches: 53, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
29 18 0.34
30 5 0.09
31 7 0.13
32 23 0.43
ACGTcount: A:0.28, C:0.05, G:0.06, T:0.61
Consensus pattern (32 bp):
TATATATTATTGATTTTATATTATTTTATGTA
Found at i:78520872 original size:19 final size:20
Alignment explanation
Indices: 78520848--78520890 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
78520838 AGATGTCACG
78520848 TTTTAAAA-T-AATATAATT
1 TTTTAAAATTAAATATAATT
78520866 ATTTTAAAATTAAATATAATT
1 -TTTTAAAATTAAATATAATT
78520887 TTTT
1 TTTT
78520891 TTGGCAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.36
20 5 0.23
21 9 0.41
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTTAAAATTAAATATAATT
Found at i:78523030 original size:31 final size:31
Alignment explanation
Indices: 78522992--78523055 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
78522982 GCCAAACCAT
78522992 AGCCATATCATAAGATCATTTACACAAATTG
1 AGCCATATCATAAGATCATTTACACAAATTG
78523023 AGCCATATCATAAGATCATTTACACAAATTG
1 AGCCATATCATAAGATCATTTACACAAATTG
78523054 AG
1 AG
78523056 TATTTTGCCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.42, C:0.19, G:0.11, T:0.28
Consensus pattern (31 bp):
AGCCATATCATAAGATCATTTACACAAATTG
Found at i:78533188 original size:30 final size:30
Alignment explanation
Indices: 78533154--78533233 Score: 90
Period size: 30 Copynumber: 2.7 Consensus size: 30
78533144 TGGTTGACAC
* *
78533154 ATCCCTTTTCTTAATTTGATAACCGAAGTT
1 ATCCCTTTTCATAATTTGATAACCGAAGCT
* * * *
78533184 ATCCC-TTTCAATAGTTCGATAGCTGAAGCT
1 ATCCCTTTTC-ATAATTTGATAACCGAAGCT
78533214 ATCCCTTTTCATAATTTGAT
1 ATCCCTTTTCATAATTTGAT
78533234 GGTCGTCACC
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
29 4 0.10
30 32 0.80
31 4 0.10
ACGTcount: A:0.26, C:0.21, G:0.11, T:0.41
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATAACCGAAGCT
Found at i:78533280 original size:30 final size:30
Alignment explanation
Indices: 78533184--78533287 Score: 81
Period size: 30 Copynumber: 3.5 Consensus size: 30
78533174 AACCGAAGTT
* *
78533184 ATCCC-TTTCAATAGTTCGATAG-CTGAAGCT
1 ATCCCTTTTC-ATAGATCGATAGTC-GAAGCC
* * *
78533214 ATCCCTTTTCATA-ATTTGATGGTCGTCA-CC
1 ATCCCTTTTCATAGA-TCGATAGTCG-AAGCC
*
78533244 AACCCTTTTCATAGATCGATAGTCGAAGCC
1 ATCCCTTTTCATAGATCGATAGTCGAAGCC
*
78533274 ATCCCTTGTCATAG
1 ATCCCTTTTCATAG
78533288 TTCAATGTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
29 1 0.02
30 49 0.86
31 7 0.12
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (30 bp):
ATCCCTTTTCATAGATCGATAGTCGAAGCC
Found at i:78533300 original size:60 final size:60
Alignment explanation
Indices: 78533184--78533315 Score: 144
Period size: 60 Copynumber: 2.2 Consensus size: 60
78533174 AACCGAAGTT
* * * **
78533184 ATCCC-TTTCAATAGTTCGATAGCTGAAGCTATCCCTTTTCATAATTTGATGGTCGTCACCA
1 ATCCCTTTTC-ATAGATCGATAGCTGAAGCCATCCCTTGTCATAATTCAATGGTCGTCA-CA
* *
78533245 A-CCCTTTTCATAGATCGATAG-TCGAAGCCATCCCTTGTCATAGTTCAATGTTCGTCACA
1 ATCCCTTTTCATAGATCGATAGCT-GAAGCCATCCCTTGTCATAATTCAATGGTCGTCACA
*
78533304 ATTCCTTTTCAT
1 ATCCCTTTTCAT
78533316 TGTTGATGGT
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
59 4 0.07
60 51 0.85
61 5 0.08
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.36
Consensus pattern (60 bp):
ATCCCTTTTCATAGATCGATAGCTGAAGCCATCCCTTGTCATAATTCAATGGTCGTCACA
Found at i:78533365 original size:29 final size:29
Alignment explanation
Indices: 78533333--78533402 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 29
78533323 GGTCATCACC
* *
78533333 ATCCCTTATCATAGTCGATAGCCGAAGTT
1 ATCCCTTTTCATAGTCGATAGCCGAAGCT
** *
78533362 ATCCCTTTTCGCATTCGATAGCCGAAGCT
1 ATCCCTTTTCATAGTCGATAGCCGAAGCT
78533391 ATCCCTTTTCAT
1 ATCCCTTTTCAT
78533403 TTGTCGATGA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.23, C:0.29, G:0.14, T:0.34
Consensus pattern (29 bp):
ATCCCTTTTCATAGTCGATAGCCGAAGCT
Found at i:78535644 original size:176 final size:175
Alignment explanation
Indices: 78535350--78535701 Score: 695
Period size: 176 Copynumber: 2.0 Consensus size: 175
78535340 TTTTCTCGCA
78535350 ACCTTTTTGTACCGTAATAAAAAAATTGCCAGCGAAGGTATTTCAGTTTTGTAGCAAGACTGCAA
1 ACCTTTTTGTACCGTAATAAAAAAATTGCCAGCGAAGGTATTTCAGTTTTGTAGCAAGACTGCAA
78535415 ATGATAGTGGCATCTTAACAGGAAGCAAAATGCGTTGGGTTTTGACTTGAGTAAGCATATCAGAC
66 ATGATAGTGGCATCTTAACAGGAAGCAAAATGCGTTGGGTTTTGACTTGAGTAAGCATATCAGAC
78535480 AAGCTCGATTCTTCATTAATCCCCCCCCTTCCCCCCCCCCCCCCCC
131 AAGCTCGATTCTTCATTAATCCCCCCCC-TCCCCCCCCCCCCCCCC
78535526 ACCTTTTTGTACCGTAATAAAAAAATTGCCAGCGAAGGTATTTCAGTTTTGTAGCAAGACTGCAA
1 ACCTTTTTGTACCGTAATAAAAAAATTGCCAGCGAAGGTATTTCAGTTTTGTAGCAAGACTGCAA
78535591 ATGATAGTGGCATCTTAACAGGAAGCAAAATGCGTTGGGTTTTGACTTGAGTAAGCATATCAGAC
66 ATGATAGTGGCATCTTAACAGGAAGCAAAATGCGTTGGGTTTTGACTTGAGTAAGCATATCAGAC
78535656 AAGCTCGATTCTTCATTAATCCCCCCCCTCCCCCCCCCCCCCCCC
131 AAGCTCGATTCTTCATTAATCCCCCCCCTCCCCCCCCCCCCCCCC
78535701 A
1 A
78535702 AAAAAAAAAA
Statistics
Matches: 176, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
175 18 0.10
176 158 0.90
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (175 bp):
ACCTTTTTGTACCGTAATAAAAAAATTGCCAGCGAAGGTATTTCAGTTTTGTAGCAAGACTGCAA
ATGATAGTGGCATCTTAACAGGAAGCAAAATGCGTTGGGTTTTGACTTGAGTAAGCATATCAGAC
AAGCTCGATTCTTCATTAATCCCCCCCCTCCCCCCCCCCCCCCCC
Found at i:78536920 original size:35 final size:35
Alignment explanation
Indices: 78536874--78536941 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
78536864 TTCAACTTCA
78536874 AAACCTCAAAATTAAAGAAAAGAAAACTATACTCG
1 AAACCTCAAAATTAAAGAAAAGAAAACTATACTCG
78536909 AAACCTCAAAATTAAAGAAAAGAAAACTATACT
1 AAACCTCAAAATTAAAGAAAAGAAAACTATACT
78536942 GCCAGATGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.59, C:0.16, G:0.07, T:0.18
Consensus pattern (35 bp):
AAACCTCAAAATTAAAGAAAAGAAAACTATACTCG
Found at i:78546469 original size:2 final size:2
Alignment explanation
Indices: 78546452--78546485 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
78546442 CAACATTTAT
*
78546452 TA TA T- TA TA TA CA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
78546486 TTGGAATAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:78547046 original size:17 final size:17
Alignment explanation
Indices: 78547024--78547056 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
78547014 CACTAACGTG
*
78547024 AAAATGTAATGACAATA
1 AAAATGCAATGACAATA
78547041 AAAATGCAATGACAAT
1 AAAATGCAATGACAAT
78547057 GTGTACTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (17 bp):
AAAATGCAATGACAATA
Found at i:78547533 original size:21 final size:22
Alignment explanation
Indices: 78547509--78547556 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
78547499 CATCTTTAGG
* * *
78547509 AACTTCT-TTTTCTTCAGCAGC
1 AACTTCTCTCTTCTACAGCAAC
78547530 AACTT-TCTCTTCTACAGCAAC
1 AACTTCTCTCTTCTACAGCAAC
78547551 AACTTC
1 AACTTC
78547557 CTTCTCAACA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 1 0.05
21 21 0.95
ACGTcount: A:0.25, C:0.31, G:0.06, T:0.38
Consensus pattern (22 bp):
AACTTCTCTCTTCTACAGCAAC
Found at i:78552498 original size:40 final size:40
Alignment explanation
Indices: 78552454--78552567 Score: 210
Period size: 40 Copynumber: 2.9 Consensus size: 40
78552444 GCTACTTGCT
*
78552454 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
78552494 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
78552534 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
78552568 TGTAACACCC
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 71 1.00
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:78552553 original size:80 final size:79
Alignment explanation
Indices: 78552421--78552567 Score: 224
Period size: 80 Copynumber: 1.8 Consensus size: 79
78552411 AAACCAAGTA
* * *
78552421 CCTTCGGAATTTAGCCGGATATAGCTACTTGCTCAAATGCCTTCAGGACTTAGCCCGGTTATAGT
1 CCTTCGGAACTTAGCCGGATATAGCTACTCGCACAAATGCCTTCAGGACTTAGCCCGGTTATAGT
78552486 AACTCGCACAAATG
66 AACTCGCACAAATG
* *
78552500 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGAACTTAG-CCGGATATAGCT-ACTCGCACAAATGCCTTCAGGACTTAGCCCGGTTATA
78552564 GTAA
64 GTAA
78552568 TGTAACACCC
Statistics
Matches: 61, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
79 13 0.21
80 48 0.79
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (79 bp):
CCTTCGGAACTTAGCCGGATATAGCTACTCGCACAAATGCCTTCAGGACTTAGCCCGGTTATAGT
AACTCGCACAAATG
Found at i:78556303 original size:28 final size:27
Alignment explanation
Indices: 78556240--78556309 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
78556230 ATAGTGAGTC
78556240 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
78556267 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
78556295 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
78556310 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:78564225 original size:27 final size:28
Alignment explanation
Indices: 78564177--78564273 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
78564167 ATAGTGAGTC
78564177 CGCACAC--AGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
78564202 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
78564230 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
78564260 CGCACACTTAGTGC
1 CGCACACTTAGTGC
78564274 CATTCTCATG
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
25 7 0.11
27 13 0.21
28 22 0.36
30 19 0.31
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:78572112 original size:27 final size:27
Alignment explanation
Indices: 78572094--78572190 Score: 115
Period size: 27 Copynumber: 3.5 Consensus size: 27
78572084 ATAGTGAGTC
78572094 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
78572121 CGCACACTTAGTGCTA-ATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
* * * *
78572148 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAACT
78572177 CGCACACTTAGTGC
1 CGCACACTTAGTGC
78572191 CATTCTCATG
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
26 5 0.08
27 35 0.58
28 2 0.03
29 17 0.28
30 1 0.02
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:78572969 original size:39 final size:40
Alignment explanation
Indices: 78572904--78573116 Score: 314
Period size: 39 Copynumber: 5.5 Consensus size: 40
78572894 CGGATGATAA
* *
78572904 CCGGGCTAAGTCCC-AAGGCATTTGTGCTAGTGACTA-AT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
78572942 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
78572982 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
78573021 CCGGGCT-AGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
78573060 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
78573100 CC-GGCTAAAT-CCGAAGG
1 CCGGGCTAAGTCCCGAAGG
78573117 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 8, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
38 23 0.14
39 98 0.60
40 41 0.25
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:78581115 original size:39 final size:40
Alignment explanation
Indices: 78581009--78581224 Score: 325
Period size: 39 Copynumber: 5.5 Consensus size: 40
78580999 CGGATGATAA
* *
78581009 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
78581049 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
78581089 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
78581128 CCGGGCTAGGT-CCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
78581167 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
78581207 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
78581225 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
39 92 0.56
40 72 0.44
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:78590213 original size:39 final size:39
Alignment explanation
Indices: 78590159--78590271 Score: 163
Period size: 39 Copynumber: 2.9 Consensus size: 39
78590149 AATGTTCGAG
78590159 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * * *
78590198 TGATACCCGGGCTAAGCCTGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
78590237 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
78590272 GGTTACCATA
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 49 0.75
40 16 0.25
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:78590287 original size:40 final size:39
Alignment explanation
Indices: 78590159--78590302 Score: 162
Period size: 39 Copynumber: 3.6 Consensus size: 39
78590149 AATGTTCGAG
* *
78590159 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
78590198 TGATACCCGGGCTAAGCCTGAAGGCAATTGTGCGAGTTG
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * * *
78590237 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATAACCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** *
78590277 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATAACCGGGCTAAG-CCCGAAGGC
78590303 GTTTGAACGA
Statistics
Matches: 89, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 49 0.55
40 40 0.45
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Done.