Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 273 of 444
Found at i:78591930 original size:15 final size:15
Alignment explanation
Indices: 78591898--78591926 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
78591888 ATTTTTTGTG
78591898 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
78591913 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
78591927 ATTTTCATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:78592462 original size:21 final size:23
Alignment explanation
Indices: 78592438--78592481 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
78592428 GAATCGAATT
78592438 TTAT-AAAT-TGTATATACTTAA
1 TTATCAAATGTGTATATACTTAA
* *
78592459 TTATCGAATGTGTATATGCTTAA
1 TTATCAAATGTGTATATACTTAA
78592482 GAATTAAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 4 0.21
22 3 0.16
23 12 0.63
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.45
Consensus pattern (23 bp):
TTATCAAATGTGTATATACTTAA
Found at i:78592678 original size:56 final size:56
Alignment explanation
Indices: 78592612--78592748 Score: 211
Period size: 56 Copynumber: 2.4 Consensus size: 56
78592602 GACCATGGTA
* * * *
78592612 TCGATATATGTGTGCGAGTAAGACCACGTTTTATGCTTTGGCATCGATATGTGACT
1 TCGATATATGTGTGCGAGTAAGACCACATTTTATACGTTGGCATCCATATGTGACT
* *
78592668 TCGATATATGTGTGTGAGTAAGACCATATTTTATACGTTGGCATCCATATGTGACT
1 TCGATATATGTGTGCGAGTAAGACCACATTTTATACGTTGGCATCCATATGTGACT
*
78592724 TCGATATATGTGTTCGAGTAAGACC
1 TCGATATATGTGTGCGAGTAAGACC
78592749 CTGTTTGGGA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 73 1.00
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (56 bp):
TCGATATATGTGTGCGAGTAAGACCACATTTTATACGTTGGCATCCATATGTGACT
Found at i:78592766 original size:56 final size:56
Alignment explanation
Indices: 78592612--78592777 Score: 194
Period size: 56 Copynumber: 3.0 Consensus size: 56
78592602 GACCATGGTA
* ** * * *
78592612 TCGATATATGTGTGCGAGTAAGACCACGTTTTATGCTTTGGCATCGATATGTGACT
1 TCGATATATGTGTGTGAGTAAGACCATATTTGATACGTTGGCATCGATATGTGACT
* *
78592668 TCGATATATGTGTGTGAGTAAGACCATATTTTATACGTTGGCATCCATATGTGACT
1 TCGATATATGTGTGTGAGTAAGACCATATTTGATACGTTGGCATCGATATGTGACT
* *
78592724 TCGATATATGTGT-TCGAGTAAGACCCTGTTTGGGATA-G-TGGCATCGATATGTGA
1 TCGATATATGTGTGT-GAGTAAGACCATATTT--GATACGTTGGCATCGATATGTGA
78592778 TTACATGTAA
Statistics
Matches: 97, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
55 1 0.01
56 92 0.95
57 1 0.01
58 3 0.03
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (56 bp):
TCGATATATGTGTGTGAGTAAGACCATATTTGATACGTTGGCATCGATATGTGACT
Found at i:78596018 original size:40 final size:42
Alignment explanation
Indices: 78595961--78596039 Score: 126
Period size: 40 Copynumber: 1.9 Consensus size: 42
78595951 CACTTATTGT
*
78595961 GAGATTCAAAATAGCTTCGGCTATGTA-TGACACTTAGTTTG
1 GAGATTCAAAATAGCTTCGGATATGTATTGACACTTAGTTTG
*
78596002 GAGATT-AAAATAGCTTCGGATATGTATTGTCACTTAGT
1 GAGATTCAAAATAGCTTCGGATATGTATTGACACTTAGT
78596040 GTGTGACGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
40 19 0.54
41 16 0.46
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (42 bp):
GAGATTCAAAATAGCTTCGGATATGTATTGACACTTAGTTTG
Found at i:78596036 original size:41 final size:41
Alignment explanation
Indices: 78595902--78596039 Score: 124
Period size: 40 Copynumber: 3.4 Consensus size: 41
78595892 ACAATTCAGC
* * * * * *
78595902 TATGTATGGCACTTAGTAT-GCGATTCGAGATAGCTTTAGG-
1 TATGTATGACACTTAGTTTGGAGATTCAAAATAGC-TTCGGA
* * *
78595942 TATGGATGGCACTTA--TTGTGAGATTCAAAATAGCTTCGGC
1 TATGTATGACACTTAGTTTG-GAGATTCAAAATAGCTTCGGA
78595982 TATGTATGACACTTAGTTTGGAGATT-AAAATAGCTTCGGA
1 TATGTATGACACTTAGTTTGGAGATTCAAAATAGCTTCGGA
*
78596022 TATGTATTGTCACTTAGT
1 TATGTA-TGACACTTAGT
78596040 GTGTGACGAT
Statistics
Matches: 82, Mismatches: 10, Indels: 11
0.80 0.10 0.11
Matches are distributed among these distances:
38 1 0.01
39 4 0.05
40 58 0.71
41 16 0.20
42 3 0.04
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (41 bp):
TATGTATGACACTTAGTTTGGAGATTCAAAATAGCTTCGGA
Found at i:78597513 original size:16 final size:17
Alignment explanation
Indices: 78597492--78597524 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
78597482 TTGTTTTTCC
*
78597492 CTTTTTG-GTTTTGCTT
1 CTTTTTGAGTGTTGCTT
78597508 CTTTTTGAGTGTTGCTT
1 CTTTTTGAGTGTTGCTT
78597525 TATATTAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.03, C:0.12, G:0.21, T:0.64
Consensus pattern (17 bp):
CTTTTTGAGTGTTGCTT
Found at i:78600378 original size:27 final size:27
Alignment explanation
Indices: 78600348--78600417 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
78600338 CGACTTGTAA
* *
78600348 AATTACCAAAGTACTCCCGATTTACAG
1 AATTACCAAAGTACCCCCAATTTACAG
****
78600375 AATTACCGTTTTACCCCCAATTTACAG
1 AATTACCAAAGTACCCCCAATTTACAG
*
78600402 AATTACCAAAATACCC
1 AATTACCAAAGTACCC
78600418 TTGGTTTATA
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (27 bp):
AATTACCAAAGTACCCCCAATTTACAG
Found at i:78600425 original size:27 final size:27
Alignment explanation
Indices: 78600402--78600525 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
78600392 CAATTTACAG
78600402 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
78600429 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
78600456 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
78600483 AATTACCAAAATACCCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
78600510 AATTACTAAAATACCC
1 AATTACCAAAATACCC
78600526 CTGTAGGGTA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:78600445 original size:54 final size:54
Alignment explanation
Indices: 78600386--78600498 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
78600376 ATTACCGTTT
*
78600386 TACCCCCAATTTACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCCCAATTTACAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** ** * * *
78600440 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TACCCCCAATTTACAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
78600494 TACCC
1 TACCC
78600499 ATGGTTTGAA
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.40, C:0.24, G:0.06, T:0.30
Consensus pattern (54 bp):
TACCCCCAATTTACAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:78600504 original size:54 final size:54
Alignment explanation
Indices: 78600402--78600525 Score: 203
Period size: 54 Copynumber: 2.3 Consensus size: 54
78600392 CAATTTACAG
* * *
78600402 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATGGTTTGAAA
* *
78600456 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATGGTTTGAAA
78600510 AATTACTAAAATACCC
1 AATTACTAAAATACCC
78600526 CTGTAGGGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATGGTTTGAAA
Found at i:78600538 original size:27 final size:27
Alignment explanation
Indices: 78600508--78600569 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
78600498 CATGGTTTGA
78600508 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
78600535 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
78600562 AAAATTAC
1 AAAATTAC
78600570 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:78600538 original size:54 final size:54
Alignment explanation
Indices: 78600402--78600552 Score: 162
Period size: 54 Copynumber: 2.8 Consensus size: 54
78600392 CAATTTACAG
* ** * * *
78600402 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
78600456 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
78600510 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
78600553 TTGTGGGGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.04
54 81 0.95
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
Found at i:78600553 original size:81 final size:81
Alignment explanation
Indices: 78600402--78600554 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
78600392 CAATTTACAG
* **
78600402 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
78600467 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
78600483 AATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
78600546 AATACCCTT
64 AATACCCTT
78600555 GTGGGGTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:78602312 original size:30 final size:30
Alignment explanation
Indices: 78602276--78602406 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
78602266 GACAAGATTG
* * * * *
78602276 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
78602306 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
78602334 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
78602364 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
78602393 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
78602407 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:78602367 original size:58 final size:58
Alignment explanation
Indices: 78602276--78602406 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
78602266 GACAAGATTG
* * * * * *
78602276 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
78602334 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
78602393 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
78602407 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:78610250 original size:30 final size:30
Alignment explanation
Indices: 78610214--78610344 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
78610204 GACAAGATTG
* * * * *
78610214 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
78610244 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
78610272 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
78610302 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
78610331 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
78610345 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:78610305 original size:58 final size:58
Alignment explanation
Indices: 78610214--78610344 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
78610204 GACAAGATTG
* * * * * *
78610214 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
78610272 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
78610331 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
78610345 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:78612308 original size:28 final size:28
Alignment explanation
Indices: 78612276--78612334 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
78612266 GCGTAGATCA
78612276 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
78612304 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
78612332 CGA
1 CGA
78612335 TATACCTCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.46, C:0.25, G:0.12, T:0.17
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:78615630 original size:27 final size:27
Alignment explanation
Indices: 78615562--78615632 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
78615552 CGACTTGTAA
* *
78615562 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
78615589 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
78615616 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
78615633 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:78615639 original size:27 final size:27
Alignment explanation
Indices: 78615616--78615739 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
78615606 CAATTTACAG
78615616 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
78615643 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
78615670 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
78615697 AATTACCAAAATACCCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
78615724 AATTACTAAAATACCC
1 AATTACCAAAATACCC
78615740 CTGTAGGGTA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:78615658 original size:54 final size:53
Alignment explanation
Indices: 78615600--78615739 Score: 138
Period size: 54 Copynumber: 2.6 Consensus size: 53
78615590 ATTACCGTTT
78615600 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
78615654 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * *
78615708 TACCCATGGTTTGAAAAATTACTAAAATACCC
1 TACCC-TCAATTGTAAAATTACCAAAATACCC
78615740 CTGTAGGGTA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
53 3 0.04
54 64 0.84
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:78615751 original size:81 final size:81
Alignment explanation
Indices: 78615616--78615768 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
78615606 CAATTTACAG
* **
78615616 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
78615681 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
78615697 AATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
78615760 AATACCCTT
64 AATACCCTT
78615769 GTGGGGTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:78615752 original size:27 final size:27
Alignment explanation
Indices: 78615722--78615783 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
78615712 CATGGTTTGA
78615722 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
78615749 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
78615776 AAAATTAC
1 AAAATTAC
78615784 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:78615752 original size:54 final size:54
Alignment explanation
Indices: 78615616--78615766 Score: 162
Period size: 54 Copynumber: 2.8 Consensus size: 54
78615606 CAATTTACAG
* ** * * *
78615616 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
78615670 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
78615724 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
78615767 TTGTGGGGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.04
54 81 0.95
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
Found at i:78616432 original size:28 final size:28
Alignment explanation
Indices: 78616401--78616455 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
78616391 GCGTAGATCA
78616401 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
78616429 CGAAATTACCCCTAAAGAGCAAAATTA
1 CGAAATTACCCCTAAAGAGCAAAATTA
78616456 TCGATATACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.47, C:0.24, G:0.11, T:0.18
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:78620819 original size:46 final size:47
Alignment explanation
Indices: 78620676--78620892 Score: 232
Period size: 46 Copynumber: 4.6 Consensus size: 47
78620666 ATGCCAATGC
* * *
78620676 CATGTCCCAGACATGGTATTACACTGGCTCTCACATATC-CGTGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCT-ACATCTCAAG-GCCGATG
* *
78620725 CATGTCCCAGACATGTCTTACACTAG--C-ACATCTCGTA-GCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTACATCTC-AAGGCCGATG
* *
78620769 CATGTCCCAGACATGTCTTACATTGGCT-TACATCTCAAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTACATCTCAAGGCCGATG
* * * *
78620815 CATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTACATCTCAAGGCCGATG
78620861 CCATGTCCCAGACATGGTCTTACACTGGCTCT
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCT
78620893 CATAATGTGG
Statistics
Matches: 144, Mismatches: 15, Indels: 19
0.81 0.08 0.11
Matches are distributed among these distances:
44 37 0.26
45 1 0.01
46 52 0.36
47 15 0.10
48 25 0.17
49 14 0.10
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTACATCTCAAGGCCGATG
Found at i:78620832 original size:90 final size:94
Alignment explanation
Indices: 78620664--78620938 Score: 323
Period size: 94 Copynumber: 2.9 Consensus size: 94
78620654 ACATAGGGTA
* * * *
78620664 TAATGCCAATGCCATGTCCCAGACATGGTATTACACTGGCTCTCACATATCCGTGCCGATGCATG
1 TAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-ACATATCAG-GCTGATGCATG
78620729 TCCCAGACATGTCTTACACTAGCACATC-TC
64 TCCCAGACATGTCTTACACTAGCACATCGTC
* *
78620759 GT-A-GCCGATG-CATGTCCCAGACAT-GTCTTACATTGGCT-TACATCTCAAGGCTGATGCATG
1 -TAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATATC-AGGCTGATGCATG
*
78620819 TCCCAGACATGTCTTACACTAGCTC-TCGTC
64 TCCCAGACATGTCTTACACTAGCACATCGTC
* ** * *
78620849 TCAATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATGTGGTTGATACATG
1 T-AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACAT-ATCAGGCTGATGCATG
*
78620913 TCTCAGACATGTCTTACACTAGCACA
64 TCCCAGACATGTCTTACACTAGCACA
78620939 CACACATCAC
Statistics
Matches: 153, Mismatches: 16, Indels: 21
0.81 0.08 0.11
Matches are distributed among these distances:
89 3 0.02
90 42 0.27
91 3 0.02
92 18 0.12
93 28 0.18
94 55 0.36
95 3 0.02
96 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (94 bp):
TAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATATCAGGCTGATGCATGTC
CCAGACATGTCTTACACTAGCACATCGTC
Found at i:78629932 original size:31 final size:31
Alignment explanation
Indices: 78629879--78629940 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
78629869 CCTTTTCATA
* *
78629879 TTTCATATTTCATAACAGTGGGCTGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
78629910 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
78629941 CCACTATAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:78630190 original size:24 final size:24
Alignment explanation
Indices: 78630150--78630232 Score: 82
Period size: 24 Copynumber: 3.4 Consensus size: 24
78630140 CTGGAGGCCT
*
78630150 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTGATAAACTGGGGCAA
78630174 AGCCCTTTTGATAAACTGGGGCACA
1 AGCCCTTTTGATAAACTGGGGCA-A
*
78630199 AACCCTTTTTAGA-AAACT-GGGCAAA
1 AGCCC-TTTT-GATAAACTGGGGC-AA
78630224 AGCCCTTTT
1 AGCCCTTTT
78630233 TGCACTTCCT
Statistics
Matches: 51, Mismatches: 3, Indels: 10
0.80 0.05 0.16
Matches are distributed among these distances:
23 7 0.14
24 18 0.35
25 14 0.27
26 10 0.20
27 2 0.04
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:78630302 original size:9 final size:9
Alignment explanation
Indices: 78630288--78630344 Score: 60
Period size: 9 Copynumber: 5.9 Consensus size: 9
78630278 ACATCATGTG
78630288 CATATCATA
1 CATATCATA
*
78630297 CATATCATGTG
1 CATATCA--TA
78630308 CATATCATA
1 CATATCATA
*
78630317 CATATCATGTG
1 CATATCA--TA
78630328 CATATCATA
1 CATATCATA
78630337 CATATCAT
1 CATATCAT
78630345 GTATATCAGA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
9 24 0.60
11 16 0.40
ACGTcount: A:0.37, C:0.21, G:0.07, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:78630303 original size:20 final size:20
Alignment explanation
Indices: 78630280--78630346 Score: 134
Period size: 20 Copynumber: 3.4 Consensus size: 20
78630270 TTATGAATAC
78630280 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
78630300 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
78630320 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
78630340 ATCATGT
1 ATCATGT
78630347 ATATCAGAAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.34, C:0.19, G:0.10, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:78630310 original size:40 final size:39
Alignment explanation
Indices: 78630266--78630346 Score: 119
Period size: 40 Copynumber: 2.0 Consensus size: 39
78630256 CCCATCCCAA
78630266 TGCATTATGAATAC-ATCATGTGCATATCATACATATCATG
1 TGCA-TAT-AATACAATCATGTGCATATCATACATATCATG
*
78630306 TGCATATCATACATATCATGTGCATATCATACATATCATG
1 TGCATATAATACA-ATCATGTGCATATCATACATATCATG
78630346 T
1 T
78630347 ATATCAGAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
38 4 0.11
39 3 0.08
40 31 0.82
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.36
Consensus pattern (39 bp):
TGCATATAATACAATCATGTGCATATCATACATATCATG
Found at i:78630311 original size:11 final size:11
Alignment explanation
Indices: 78630280--78630335 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
78630270 TTATGAATAC
78630280 ATCATGTGCAT
1 ATCATGTGCAT
*
78630291 ATCA--TACAT
1 ATCATGTGCAT
78630300 ATCATGTGCAT
1 ATCATGTGCAT
*
78630311 ATCA--TACAT
1 ATCATGTGCAT
78630320 ATCATGTGCAT
1 ATCATGTGCAT
78630331 ATCAT
1 ATCAT
78630336 ACATATCATG
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:78634367 original size:29 final size:29
Alignment explanation
Indices: 78634312--78634369 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
78634302 TTCCCGAGCC
*
78634312 TAGGGGAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAATGTAATTATGCAAAAGTT
*
78634341 TAGGGGCAAAAATGTAATT-TGCCAAAGTT
1 TAGGGG-AAAAATGTAATTATGCAAAAGTT
78634370 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.40, C:0.07, G:0.26, T:0.28
Consensus pattern (29 bp):
TAGGGGAAAAATGTAATTATGCAAAAGTT
Found at i:78641877 original size:29 final size:30
Alignment explanation
Indices: 78641833--78641891 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
78641823 TTCCCGAGCC
*
78641833 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
78641863 TAGGGG-AAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
78641892 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:78644376 original size:45 final size:45
Alignment explanation
Indices: 78644215--78644385 Score: 197
Period size: 45 Copynumber: 3.8 Consensus size: 45
78644205 GTAACCCCCC
* * * *
78644215 TAAGTGAACTC-AACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCA
*
78644260 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTGCATCCA
* *
78644308 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCA
78644352 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
78644386 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 5 0.05
43 2 0.02
44 3 0.03
45 40 0.37
46 19 0.18
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCA
Found at i:78651131 original size:93 final size:93
Alignment explanation
Indices: 78651000--78651170 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
78650990 GACCCTAAGT
* * *
78651000 GAACTCAGACTCAACTCAACAAGCTTGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTTGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
78651065 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
78651093 GAACTCGGACTCAACTCAACGAG-TTCGGACATTTGCATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTCAGACTCAACTCAACAAGCTT-GGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
78651157 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
78651171 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACAAGCTTGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:78651167 original size:46 final size:46
Alignment explanation
Indices: 78650995--78651167 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
78650985 AACCCGACCC
* * * *
78650995 TAAGTGAACTCAGACTCAACTCAACAAGCTT-GGGCGTTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAG-TTCGGACATTTGCATCCA
* * *
78651041 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* * *
78651089 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCA
78651134 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
78651168 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 4 0.04
46 56 0.53
47 29 0.28
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:78651186 original size:46 final size:45
Alignment explanation
Indices: 78651043--78651186 Score: 127
Period size: 46 Copynumber: 3.1 Consensus size: 45
78651033 CGCATCCATA
78651043 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT
* * * *
78651090 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCT
*
78651136 AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CT
78651182 AGTGA
1 AGTGA
78651187 CATGTCACTT
Statistics
Matches: 78, Mismatches: 9, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
44 8 0.10
45 2 0.03
46 32 0.41
47 31 0.40
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCT
Found at i:78651627 original size:30 final size:30
Alignment explanation
Indices: 78651593--78651652 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
78651583 ATTTAATATG
78651593 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
78651623 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
78651653 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:78657523 original size:28 final size:29
Alignment explanation
Indices: 78657491--78657545 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
78657481 GATTTGGAGG
* *
78657491 AATTACTG-TATTAGTGGCTTTGCCACGT
1 AATTACTGATATCAGTGGCTTTACCACGT
*
78657519 AATTACTGATATCGGTGGCTTTACCAC
1 AATTACTGATATCAGTGGCTTTACCAC
78657546 ATTTATTGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 8 0.35
29 15 0.65
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (29 bp):
AATTACTGATATCAGTGGCTTTACCACGT
Found at i:78661210 original size:71 final size:71
Alignment explanation
Indices: 78661126--78661289 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
78661116 CGATTTGTCT
78661126 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
78661191 CTTTCA
66 CTTTCA
*
78661197 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
78661262 CTTTCA
66 CTTTCA
78661268 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
78661290 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:78661327 original size:71 final size:70
Alignment explanation
Indices: 78661126--78661323 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
78661116 CGATTTGTCT
* * * * *
78661126 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
78661191 CTTTCA
65 CTTTCA
* * * *
78661197 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
78661262 CTTTCA
65 CTTTCA
* *
78661268 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
78661324 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 95 0.80
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:78675652 original size:46 final size:45
Alignment explanation
Indices: 78675599--78675862 Score: 186
Period size: 46 Copynumber: 5.8 Consensus size: 45
78675589 AGATTTGTGT
**
78675599 GCCAGTGTAAGACATGTCCAGGACATGCATCGGCCACATTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA-A
78675645 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG---CATTGA-GACGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATT-ATGA--A
* *
78675691 GGGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGCAA
1 --GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATG-AA
* * *
78675739 GCTAGTGTAAGACATGTCTGGGACATGCATTGG-CATCGA-GATGTTAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCA-C-ATTATG--AA
* ** * * * * *
78675786 -CAAGTGCCAGACATGTCTGGGACATGCATCAGCTATGA-GATG-T
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCA-CATTATGAA
* *
78675829 GCTAGTGTAAGACATGTCTGGGACATTCATCGGC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC
78675863 ACGGTTACAT
Statistics
Matches: 180, Mismatches: 22, Indels: 34
0.76 0.09 0.14
Matches are distributed among these distances:
44 28 0.16
45 8 0.04
46 87 0.48
47 31 0.17
48 20 0.11
49 5 0.03
50 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAA
Found at i:78675817 original size:92 final size:91
Alignment explanation
Indices: 78675602--78675863 Score: 285
Period size: 94 Copynumber: 2.8 Consensus size: 91
78675592 TTTGTGTGCC
* ** * *
78675602 AGTGTAAGACATGTCCAGGACATGCATCGGCCACATTATGATAGCCAGTGTAAGACCATGTCTGG
1 AGTGCAAGACATGTCTGGGACATGCATCAGCCACATTATGA-AGCTAGTGTAAGA-CATGTCTGG
* ** *
78675667 GACATGGCATCGGCATTGAGACGAGGGCT
64 GACAT-GCATCGGCATCGAGACGAGAACA
*
78675696 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGCAAGCTAGTGTAAGACATGTCTGGG
1 AGTGCAAGACATGTCTGGGACATGCATCAGCCACATTATG-AAGCTAGTGTAAGACATGTCTGGG
* * **
78675761 ACATGCATTGGCATCGAGATGTTAACA
65 ACATGCATCGGCATCGAGACGAGAACA
* * * * *
78675788 AGTGCCAGACATGTCTGGGACATGCATCAGCTATGA-GATG-TGCTAGTGTAAGACATGTCTGGG
1 AGTGCAAGACATGTCTGGGACATGCATCAGCCA-CATTATGAAGCTAGTGTAAGACATGTCTGGG
*
78675851 ACATTCATCGGCA
65 ACATGCATCGGCA
78675864 CGGTTACATG
Statistics
Matches: 146, Mismatches: 20, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
90 33 0.23
92 48 0.33
93 15 0.10
94 49 0.34
95 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (91 bp):
AGTGCAAGACATGTCTGGGACATGCATCAGCCACATTATGAAGCTAGTGTAAGACATGTCTGGGA
CATGCATCGGCATCGAGACGAGAACA
Found at i:78677837 original size:40 final size:40
Alignment explanation
Indices: 78677782--78677996 Score: 294
Period size: 40 Copynumber: 5.4 Consensus size: 40
78677772 GATGATAACT
* * * *
78677782 GGGCTAAGTCTCGAAGGCATTTGCGCTAGTGACTAGT-TCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCC
*
78677822 GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
78677862 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
78677902 GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
78677942 GGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
78677981 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
78677997 TACTTGGCTT
Statistics
Matches: 160, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
38 15 0.09
39 16 0.10
40 129 0.81
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:78684121 original size:40 final size:40
Alignment explanation
Indices: 78684075--78684299 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
78684065 CTTGCACAAG
* * *
78684075 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
78684115 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
78684155 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
78684195 TCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
78684235 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
* * *
78684276 GCCTTCAGGACTTAGCTCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
78684300 CATTCGAATA
Statistics
Matches: 155, Mismatches: 27, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 127 0.82
41 27 0.17
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:78684170 original size:80 final size:80
Alignment explanation
Indices: 78684039--78684299 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
78684029 CTCAAGTAAT
* * * * * * *
78684039 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
78684102 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * *
78684117 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
* *
78684181 TCGCTAGCACAAATTC
65 TCACTAGCACAAATGC
* * * * * *
78684197 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
78684262 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
* *
78684278 CTTCAGGACTTAGCTCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
78684300 CATTCGAATA
Statistics
Matches: 151, Mismatches: 27, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
78 12 0.08
79 16 0.11
80 93 0.62
81 30 0.20
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:78684260 original size:120 final size:121
Alignment explanation
Indices: 78684076--78684299 Score: 292
Period size: 120 Copynumber: 1.9 Consensus size: 121
78684066 TTGCACAAGG
* * *
78684076 CCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
* * * **
78684141 TC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAATT
66 TCACCTAGCACAAAAGCCTTCAGGACTTAGCCCGGATATAATCGCTAGCACAAATT
* * * *
78684196 CCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAATGCCTTC-GGATCTTAGTCCGGTTAT
1 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGA-CTTAGCCCGGATAT
*
78684259 AGTCACCTAGCACAAAAGCCTTCAGGACTTAGCTCGGATAT
64 AGTCACCTAGCACAAAAGCCTTCAGGACTTAGCCCGGATAT
78684300 CATTCGAATA
Statistics
Matches: 88, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 4 0.05
120 54 0.61
121 30 0.34
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (121 bp):
CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACCTAGCACAAAAGCCTTCAGGACTTAGCCCGGATATAATCGCTAGCACAAATT
Found at i:78689428 original size:78 final size:78
Alignment explanation
Indices: 78689298--78689456 Score: 309
Period size: 78 Copynumber: 2.0 Consensus size: 78
78689288 TATCCCATGT
*
78689298 AGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACA
1 AGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTAATTCCAAGTGAAGGACA
78689363 CCATGTAGACAAG
66 CCATGTAGACAAG
78689376 AGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTAATTCCAAGTGAAGGACA
1 AGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTAATTCCAAGTGAAGGACA
78689441 CCATGTAGACAAG
66 CCATGTAGACAAG
78689454 AGA
1 AGA
78689457 GCTACGAGAC
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 80 1.00
ACGTcount: A:0.38, C:0.16, G:0.28, T:0.18
Consensus pattern (78 bp):
AGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTAATTCCAAGTGAAGGACA
CCATGTAGACAAG
Found at i:78696944 original size:41 final size:41
Alignment explanation
Indices: 78696899--78697016 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
78696889 TGAAAGATAA
78696899 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
78696940 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
78696970 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
78697011 ATGTAG
1 ATGTAG
78697017 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:78696955 original size:71 final size:71
Alignment explanation
Indices: 78696867--78697030 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78696857 GAGATGTATC
78696867 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
78696932 AGGACA
66 AGGACA
78696938 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
78697003 AGGACA
66 AGGACA
78697009 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
78697031 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:78713965 original size:174 final size:174
Alignment explanation
Indices: 78713654--78713997 Score: 573
Period size: 174 Copynumber: 2.0 Consensus size: 174
78713644 AAGGGTAATG
* *
78713654 AGGTGGTTGTGATTGGGAAGCATCAGAATTATCTGTCAAATGTGATTTCTACACTTAGAGTTGAG
1 AGGTGGTTGTGATTGGGAAGCATCAAAATTATCTGTCAAATGTGATTTCTACACTTAGAGCTGAG
*
78713719 AACTTGGTTCGTAAGGGTTGTGAGGCGTATCTAGCCTACATCAGTGCTTCGAGTTCTGACGTTCT
66 AACTTGGTTCGTAAGGGTTGTGAGGCGTATCTAGCCTACATCAGTGCTTCGAGTTCTGACGTTCC
*
78713784 GTTTGTTAAAGATATCAGAACAGTTAAAGACTTTCTAGACGTTT
131 ATTTGTTAAAGATATCAGAACAGTTAAAGACTTTCTAGACGTTT
* * *
78713828 AGGTGGTTGTGATTGGGGAGCATCAAAATTATCTGTCAAATGTGATTTTTGCACTTAGAGCTGAG
1 AGGTGGTTGTGATTGGGAAGCATCAAAATTATCTGTCAAATGTGATTTCTACACTTAGAGCTGAG
* * * *
78713893 AAGTTGGTTCGTAAGGGTTGTGAGGCGTATCTAGCCTATATCAGTGCTTCGGGTT-TAGAGGTTC
66 AACTTGGTTCGTAAGGGTTGTGAGGCGTATCTAGCCTACATCAGTGCTTCGAGTTCT-GACGTTC
78713957 CATTTGTTAAAGATATCAGAACAGTTAAAGACTTTCTAGAC
130 CATTTGTTAAAGATATCAGAACAGTTAAAGACTTTCTAGAC
78713998 ATTTTTCCCG
Statistics
Matches: 158, Mismatches: 11, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
173 1 0.01
174 157 0.99
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (174 bp):
AGGTGGTTGTGATTGGGAAGCATCAAAATTATCTGTCAAATGTGATTTCTACACTTAGAGCTGAG
AACTTGGTTCGTAAGGGTTGTGAGGCGTATCTAGCCTACATCAGTGCTTCGAGTTCTGACGTTCC
ATTTGTTAAAGATATCAGAACAGTTAAAGACTTTCTAGACGTTT
Found at i:78719660 original size:12 final size:12
Alignment explanation
Indices: 78719647--78719676 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
78719637 GACTAATTTA
78719647 TTGTGAAATGTAT
1 TTGT-AAATGTAT
78719660 TTGTAAATGTAT
1 TTGTAAATGTAT
78719672 TTGTA
1 TTGTA
78719677 TGTCCACTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 13 0.76
13 4 0.24
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (12 bp):
TTGTAAATGTAT
Found at i:78720348 original size:22 final size:22
Alignment explanation
Indices: 78720318--78720363 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
78720308 ACCAGTAAAA
*
78720318 GAAACAGTTTGATTGAGCTTTC
1 GAAACAGTTAGATTGAGCTTTC
*
78720340 GAAAGAGTTAGATTGAGCTTTC
1 GAAACAGTTAGATTGAGCTTTC
78720362 GA
1 GA
78720364 CTTCTCAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.33
Consensus pattern (22 bp):
GAAACAGTTAGATTGAGCTTTC
Found at i:78733454 original size:40 final size:40
Alignment explanation
Indices: 78733361--78733573 Score: 290
Period size: 40 Copynumber: 5.4 Consensus size: 40
78733351 AAGCCAAGTA
* * *
78733361 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
78733399 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
78733439 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
78733479 CCTTCAGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
78733519 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
78733559 CCTTCGGGACTTAGC
1 CCTTCGGGACTTAGC
78733574 TCGGTTATCA
Statistics
Matches: 158, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
38 12 0.08
39 18 0.11
40 128 0.81
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:78738720 original size:40 final size:40
Alignment explanation
Indices: 78738626--78738849 Score: 206
Period size: 40 Copynumber: 5.6 Consensus size: 40
78738616 TATTCGAATG
* *
78738626 ATATCCGAGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGAGCTAAGAT-CCGAAGGCATTTGTGCTA-GCGACT
* * * *
78738667 ATAACCG-GACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGAG-CTAAGATCCGAAGGCATTTGTGCTAG-CGACT
* *
78738707 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGAGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
* * *
78738747 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGAGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
* * * *
78738787 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGAGCTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
* * *
78738827 ACATCCGGGCT-AGACCCGAAGGC
1 ATATCCGAGCTAAGATCCGAAGGC
78738850 CTTGTGCAAG
Statistics
Matches: 156, Mismatches: 20, Indels: 16
0.81 0.10 0.08
Matches are distributed among these distances:
39 11 0.07
40 115 0.74
41 29 0.19
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGAGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
Found at i:78738806 original size:80 final size:80
Alignment explanation
Indices: 78738626--78738884 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
78738616 TATTCGAATG
* * * *
78738626 ATATCCGAGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
78738691 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * *
78738707 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
78738772 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * * *
78738787 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCT-AGACCCGAAGGCC
1 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
78738851 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
78738865 ATATCCG-GCTAAAT-CCGAAG
1 ATATCCGAGCTAAGTCCCGAAG
78738885 ATTACTTGAG
Statistics
Matches: 152, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
76 6 0.04
77 6 0.04
78 14 0.09
79 15 0.10
80 79 0.52
81 32 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:78744313 original size:40 final size:40
Alignment explanation
Indices: 78744186--78744315 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
78744176 ATGCTGGAAA
* *
78744186 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
78744226 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
* *
78744266 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
78744306 TTATATCCGG
1 TTATATCCGG
78744316 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:78747842 original size:71 final size:71
Alignment explanation
Indices: 78747756--78747919 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78747746 CGATTTGTCT
78747756 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78747821 CTTTCA
66 CTTTCA
78747827 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78747892 CTTTCA
66 CTTTCA
78747898 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
78747920 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:78747957 original size:71 final size:70
Alignment explanation
Indices: 78747756--78747953 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
78747746 CGATTTGTCT
* * * *
78747756 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
78747821 CTTTCA
65 CTTTCA
* * * *
78747827 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
78747892 CTTTCA
65 CTTTCA
* *
78747898 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
78747954 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:78755412 original size:71 final size:71
Alignment explanation
Indices: 78755326--78755489 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78755316 CGATTTGTCT
78755326 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78755391 CTTTCA
66 CTTTCA
78755397 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78755462 CTTTCA
66 CTTTCA
78755468 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
78755490 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:78755527 original size:71 final size:70
Alignment explanation
Indices: 78755326--78755523 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
78755316 CGATTTGTCT
* * * *
78755326 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
78755391 CTTTCA
65 CTTTCA
* * * *
78755397 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
78755462 CTTTCA
65 CTTTCA
* *
78755468 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
78755524 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:78757849 original size:27 final size:27
Alignment explanation
Indices: 78757831--78757899 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
78757821 ATAGTGAGTC
78757831 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
78757858 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
78757886 CGCA-ACTTAGTGCT
1 CGCACACTTAGTGCT
78757900 GTACAATTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 32 0.80
28 8 0.20
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:78765552 original size:27 final size:28
Alignment explanation
Indices: 78765504--78765571 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
78765494 ATAGTGAGTC
78765504 CGCACAC--AGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
78765529 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
78765557 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
78765572 GTACAAGTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
25 7 0.18
27 13 0.33
28 19 0.49
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:78773482 original size:27 final size:28
Alignment explanation
Indices: 78773434--78773530 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
78773424 ATAGTGAGTC
78773434 CGCACAC--AGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
78773459 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
78773487 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
78773517 CGCACACTTAGTGC
1 CGCACACTTAGTGC
78773531 CATTCTCATG
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
25 7 0.11
27 13 0.21
28 22 0.36
30 19 0.31
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:78779720 original size:25 final size:25
Alignment explanation
Indices: 78779673--78779720 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
78779663 GTCATTTAGG
* *
78779673 ATTTTGAATAGTTTGGTTCTTTGAT
1 ATTTTGAATAGATTGATTCTTTGAT
* *
78779698 ATTTTGAATTGATTGATTTTTTG
1 ATTTTGAATAGATTGATTCTTTG
78779721 GTGTTGTTCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.21, C:0.02, G:0.19, T:0.58
Consensus pattern (25 bp):
ATTTTGAATAGATTGATTCTTTGAT
Found at i:78780517 original size:13 final size:14
Alignment explanation
Indices: 78780499--78780531 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
78780489 ATGAGGGTAG
*
78780499 GATTCTGTATATCT
1 GATTCTGCATATCT
78780513 G-TTCTGCATATCT
1 GATTCTGCATATCT
78780526 GATTCT
1 GATTCT
78780532 ATTATCTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.48
Consensus pattern (14 bp):
GATTCTGCATATCT
Found at i:78789267 original size:17 final size:16
Alignment explanation
Indices: 78789233--78789267 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
78789223 ATTTTTAATT
*
78789233 TTTTTCAATTAGTTAA
1 TTTTTCAATTAATTAA
78789249 TTTTTCAATTAATTGAA
1 TTTTTCAATTAATT-AA
78789266 TT
1 TT
78789268 ATTAATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (16 bp):
TTTTTCAATTAATTAA
Found at i:78795261 original size:28 final size:28
Alignment explanation
Indices: 78795228--78795284 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
78795218 GTTTGGGGTG
78795228 GGAATTGTATATATGGAGGAAATGATCT
1 GGAATTGTATATATGGAGGAAATGATCT
78795256 GGAATTGTATATATGGAGGAAATGATCT
1 GGAATTGTATATATGGAGGAAATGATCT
78795284 G
1 G
78795285 TATGGCGACC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.04, G:0.30, T:0.32
Consensus pattern (28 bp):
GGAATTGTATATATGGAGGAAATGATCT
Found at i:78797597 original size:39 final size:39
Alignment explanation
Indices: 78797554--78797723 Score: 218
Period size: 39 Copynumber: 4.4 Consensus size: 39
78797544 AACATGTTTT
*
78797554 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* * *
78797593 TGAGTACTGTGATATATGCTTGAACA-G-TATGCGATTAAA
1 TGAGTATTGTGATATATGCTT-AA-ATGTTATGTGATTATA
* * *
78797632 TGAGTAGTGTAATATATGCTTAAATGTTATGTGGTTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
*
78797671 TGGGTATTGTGATATATGCTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* *
78797710 TGTGTAATGTGATA
1 TGAGTATTGTGATA
78797724 CATAATTAAA
Statistics
Matches: 112, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
37 1 0.01
38 3 0.03
39 105 0.94
40 2 0.02
41 1 0.01
ACGTcount: A:0.30, C:0.04, G:0.24, T:0.42
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
Found at i:78798003 original size:20 final size:20
Alignment explanation
Indices: 78797978--78798015 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
78797968 GATCCAAGCA
78797978 AGATGTTAGTT-TTATTTGGT
1 AGATGTTA-TTGTTATTTGGT
78797998 AGATGTTATTGTTATTTG
1 AGATGTTATTGTTATTTG
78798016 TTTTCGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.21, C:0.00, G:0.24, T:0.55
Consensus pattern (20 bp):
AGATGTTATTGTTATTTGGT
Found at i:78800118 original size:40 final size:40
Alignment explanation
Indices: 78800063--78800230 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
78800053 TGAATGATAC
* * *
78800063 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTCTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
78800103 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
78800143 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
78800183 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
78800223 CC-GGCTAA
1 CCGGGCTAA
78800231 ATTCTGAAGA
Statistics
Matches: 105, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
39 6 0.06
40 97 0.92
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:78800196 original size:80 final size:80
Alignment explanation
Indices: 78800063--78800230 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
78800053 TGAATGATAC
* * * *
78800063 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTCTATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGATCCAATCCGGGCTAAGACCCGAAGGCAATT-
*
78800127 GTGCGAGTTGTTATAT
65 GTGCGAGTGGTTATAT
* * *
78800143 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTA-CCAAATCCGGGTTAAGACCCGAAGGCAATT
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGATCC-AATCCGGGCTAAGACCCGAAGGCAATT
**
78800207 GTGCTTGTGGTTATAT
65 GTGCGAGTGGTTATAT
78800223 CC-GGCTAA
1 CCGGGCTAA
78800231 ATTCTGAAGA
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
79 7 0.09
80 66 0.87
81 3 0.04
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGATCCAATCCGGGCTAAGACCCGAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:78802434 original size:46 final size:45
Alignment explanation
Indices: 78802381--78802648 Score: 276
Period size: 46 Copynumber: 5.8 Consensus size: 45
78802371 TATTTGGGCA
78802381 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
78802427 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
78802474 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
78802520 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
78802567 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
78802613 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78802649 GCGGGTTACA
Statistics
Matches: 183, Mismatches: 25, Indels: 29
0.77 0.11 0.12
Matches are distributed among these distances:
43 2 0.01
44 6 0.03
45 38 0.21
46 64 0.35
47 63 0.34
48 2 0.01
49 6 0.03
50 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:78802496 original size:47 final size:47
Alignment explanation
Indices: 78802377--78802595 Score: 222
Period size: 47 Copynumber: 4.7 Consensus size: 47
78802367 AGGATATTTG
*** *
78802377 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
*
78802420 GCGAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
1 G-GCA--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
78802470 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAA-T-
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GAGAGATG-TAACTA
78802519 -G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
*
78802563 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
78802596 ACTTATGGAT
Statistics
Matches: 145, Mismatches: 15, Indels: 28
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.01
43 8 0.06
44 3 0.02
45 1 0.01
46 56 0.39
47 59 0.41
48 2 0.01
49 4 0.03
50 8 0.06
51 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (47 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:78802536 original size:93 final size:93
Alignment explanation
Indices: 78802377--78802640 Score: 485
Period size: 93 Copynumber: 2.8 Consensus size: 93
78802367 AGGATATTTG
*
78802377 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
78802442 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
*
78802470 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
78802535 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
78802563 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
78802627 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
78802641 ACTTATGGGC
Statistics
Matches: 166, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
92 27 0.16
93 139 0.84
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:78805610 original size:15 final size:15
Alignment explanation
Indices: 78805575--78805653 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
78805565 ATATCTTGGG
*
78805575 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
78805590 -TTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
78805604 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
78805619 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
78805634 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
78805648 TTTCTT
1 TTTCTT
78805654 GTTATCTTTG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
14 23 0.42
15 30 0.55
16 2 0.04
ACGTcount: A:0.10, C:0.16, G:0.14, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:78805636 original size:30 final size:30
Alignment explanation
Indices: 78805566--78805652 Score: 99
Period size: 29 Copynumber: 3.0 Consensus size: 30
78805556 CATAGTATCA
* * * *
78805566 TATCTTGGGTTTCTTTATCCT-GGATTCTT
1 TATCTTGGATTTCTTTATTCTGGGTTTCTC
78805595 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGGTTTCTC
*
78805625 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGGTTTCT
78805653 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
28 1 0.02
29 24 0.48
30 24 0.48
31 1 0.02
ACGTcount: A:0.10, C:0.16, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGGTTTCTC
Found at i:78807623 original size:46 final size:46
Alignment explanation
Indices: 78807570--78807732 Score: 206
Period size: 46 Copynumber: 3.5 Consensus size: 46
78807560 TATTTGGACA
78807570 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
78807616 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* *
78807663 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
78807709 TCCGAACTCGTTGAGTTGAGTCCG
1 TCCGAACTCGTTGAGTTGAGTCCG
78807733 GGTTTGAGAG
Statistics
Matches: 96, Mismatches: 14, Indels: 14
0.77 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 55 0.57
47 31 0.32
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:78807690 original size:47 final size:47
Alignment explanation
Indices: 78807616--78807784 Score: 184
Period size: 47 Copynumber: 3.6 Consensus size: 47
78807606 GATGCGAATG
78807616 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
* * *** * *
78807663 TCCGAGCTCGTTGAGTTGAGTCTGAGTTC-ACTTATG-GA-T-GCGAA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA
* *
78807707 TGTCCGAACTCGTTGAGTTGAGTCCGGGTTTGAGAGATGTAACTAGGCA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
* *
78807756 TCCGAGCTCGTTGCGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
78807785 ACTTATGGGC
Statistics
Matches: 95, Mismatches: 20, Indels: 14
0.74 0.16 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 29 0.31
47 56 0.59
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
Found at i:78807727 original size:93 final size:93
Alignment explanation
Indices: 78807568--78807792 Score: 405
Period size: 93 Copynumber: 2.4 Consensus size: 93
78807558 GATATTTGGA
*
78807568 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTT
78807633 GAGTCCGAGTTCGAGAGATGTAACTAGG
66 GAGTCCGAGTTCGAGAGATGTAACTAGG
*
78807661 CATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTT
* *
78807726 GAGTCCGGGTTTGAGAGATGTAACTAGG
66 GAGTCCGAGTTCGAGAGATGTAACTAGG
*
78807754 CATCCGAGCTCGTTGCGTTGAGTCCGAGTTCACTTATGG
1 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78807793 GCGGGTTACA
Statistics
Matches: 126, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 126 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTT
GAGTCCGAGTTCGAGAGATGTAACTAGG
Found at i:78811637 original size:42 final size:42
Alignment explanation
Indices: 78811567--78811707 Score: 137
Period size: 42 Copynumber: 3.4 Consensus size: 42
78811557 GAGATGAGAA
* * * *
78811567 TACGTGTAAGACCATATCTAGGATATGGCATCGATATGATAT
1 TACGTGTAAGACCATGTCTGGGACATGGCATCGATATGAAAT
78811609 TACGTGTAAGACCATGTCTGGGACATGGCATCGAT-TCGAAAT
1 TACGTGTAAGACCATGTCTGGGACATGGCATCGATAT-GAAAT
** * *
78811651 TTTGTGTAAGACCATAG-CTGGG-CTATTAGCATCGATATGAGAT
1 TACGTGTAAGACCAT-GTCTGGGAC-A-TGGCATCGATATGAAAT
*
78811694 TACATGTAA-ACCAT
1 TACGTGTAAGACCAT
78811708 ATTCGGGATA
Statistics
Matches: 83, Mismatches: 11, Indels: 10
0.80 0.11 0.10
Matches are distributed among these distances:
41 2 0.02
42 60 0.72
43 20 0.24
44 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (42 bp):
TACGTGTAAGACCATGTCTGGGACATGGCATCGATATGAAAT
Found at i:78814957 original size:20 final size:19
Alignment explanation
Indices: 78814914--78814958 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
78814904 TCTTGAATAA
*
78814914 GTGCTCCTGATAGCACTATG
1 GTGCTCCTGATAGCACT-TC
78814934 GTGCTCCTGATAGCACATTC
1 GTGCTCCTGATAGCAC-TTC
78814954 GTGCT
1 GTGCT
78814959 TTAGTTAGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 22 0.96
21 1 0.04
ACGTcount: A:0.18, C:0.27, G:0.24, T:0.31
Consensus pattern (19 bp):
GTGCTCCTGATAGCACTTC
Found at i:78814958 original size:40 final size:40
Alignment explanation
Indices: 78814914--78815036 Score: 108
Period size: 40 Copynumber: 3.1 Consensus size: 40
78814904 TCTTGAATAA
* *
78814914 GTGCTCCTGATAGCACTATGGTGCTCCTGATAGCACATTC
1 GTGCTCCTGATAGCACTACGATGCTCCTGATAGCACATTC
* * * *
78814954 GTGCT-TTAGTTAGCACTACGATGCTCTTGATAGCATATTC
1 GTGCTCCT-GATAGCACTACGATGCTCCTGATAGCACATTC
* * * * *
78814994 ATGCTCCTGTTTGCATTACGATGC-CCTGACT-GCACATTT
1 GTGCTCCTGATAGCACTACGATGCTCCTGA-TAGCACATTC
78815033 GTGC
1 GTGC
78815037 CCAGTTATGT
Statistics
Matches: 66, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
39 14 0.21
40 51 0.77
41 1 0.02
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (40 bp):
GTGCTCCTGATAGCACTACGATGCTCCTGATAGCACATTC
Found at i:78814987 original size:20 final size:19
Alignment explanation
Indices: 78814914--78814988 Score: 62
Period size: 20 Copynumber: 3.8 Consensus size: 19
78814904 TCTTGAATAA
*
78814914 GTGCTCCTGATAGCACTATG
1 GTGCTCCTGATAGCACTA-C
*
78814934 GTGCTCCTGATAGCACATTC
1 GTGCTCCTGATAGCAC-TAC
* *
78814954 GTGCT-TTAGTTAGCACTAC
1 GTGCTCCT-GATAGCACTAC
*
78814973 GATGCTCTTGATAGCA
1 G-TGCTCCTGATAGCA
78814989 TATTCATGCT
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
19 4 0.09
20 38 0.84
21 3 0.07
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (19 bp):
GTGCTCCTGATAGCACTAC
Found at i:78816405 original size:27 final size:27
Alignment explanation
Indices: 78816330--78816541 Score: 289
Period size: 27 Copynumber: 7.8 Consensus size: 27
78816320 ACATACATCA
* * * *
78816330 CATAGGGGTAAAACAGTCATCTTACCA
1 CATAAGGGCAAAACAGTCATTTTACCC
* * * * *
78816357 TAAAAGGGAAAAAACAATCATTTTACCT
1 CATAAGGG-CAAAACAGTCATTTTACCC
* *
78816385 CATAAGGGCAAAATAGTCATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCC
78816412 CATAAGGGCAAAACAGTCATTTTACCC
1 CATAAGGGCAAAACAGTCATTTTACCC
*
78816439 CATAAGGGCAAAACAGTCATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCC
78816466 CATAAGGGCAAAACAGTCATTTTACCC
1 CATAAGGGCAAAACAGTCATTTTACCC
*
78816493 CATAAGGGCAAAACAATCATTTTACCC
1 CATAAGGGCAAAACAGTCATTTTACCC
*
78816520 CATAAAGGCAAAACAGTCATTT
1 CATAAGGGCAAAACAGTCATTT
78816542 ATCAATTTTG
Statistics
Matches: 165, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
27 144 0.87
28 21 0.13
ACGTcount: A:0.40, C:0.22, G:0.14, T:0.24
Consensus pattern (27 bp):
CATAAGGGCAAAACAGTCATTTTACCC
Found at i:78824113 original size:95 final size:95
Alignment explanation
Indices: 78823987--78824173 Score: 259
Period size: 95 Copynumber: 2.0 Consensus size: 95
78823977 ATGACTAAAG
* * * * *
78823987 GCCGTAAATATCGCAGCAACGCTGCCAGTTAACAGAAC-GACTATAAGCCATAAGTATCACAGGA
1 GCCGTAAATAGCGCAGCAACACGGCCAGTTAACAAAACAG-CTATAAGCCATAAGTATCACAGAA
*
78824051 AGGCTAAAAGCCATATACAGGACGGCTATAA
65 AGGCTAAAAGCCATATACAAGACGGCTATAA
* * *
78824082 GCCGTAAATAGCGCAGCAACACGGCTAGTTAATAAAACAGCTATAAGCCATAAGTATCGCAGAAA
1 GCCGTAAATAGCGCAGCAACACGGCCAGTTAACAAAACAGCTATAAGCCATAAGTATCACAGAAA
* *
78824147 GGCTAAAAGCCTTATACAATACGGCTA
66 GGCTAAAAGCCATATACAAGACGGCTA
78824174 CAGGCAGTAC
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
95 79 0.99
96 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.18
Consensus pattern (95 bp):
GCCGTAAATAGCGCAGCAACACGGCCAGTTAACAAAACAGCTATAAGCCATAAGTATCACAGAAA
GGCTAAAAGCCATATACAAGACGGCTATAA
Found at i:78824381 original size:27 final size:27
Alignment explanation
Indices: 78824321--78824382 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
78824311 GGGCATAATC
* *
78824321 GTCATTCTACCATACAGGGGTATTACA
1 GTCATTTTACCATACAGGGGCATTACA
78824348 GTCATTTTACCCA-ACAGGGGCATTACA
1 GTCATTTTA-CCATACAGGGGCATTACA
78824375 GTCATTTT
1 GTCATTTT
78824383 GCACTACAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 29 0.91
28 3 0.09
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGCATTACA
Found at i:78826239 original size:40 final size:40
Alignment explanation
Indices: 78826154--78826304 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
78826144 AATTGAATGA
* * * **
78826154 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
78826194 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
78826235 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
78826274 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
78826305 ACGTGTTATA
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:78834264 original size:40 final size:40
Alignment explanation
Indices: 78834179--78834329 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
78834169 AATTGAATGA
* * * **
78834179 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
78834219 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
78834260 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
78834299 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
78834330 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:78834343 original size:40 final size:40
Alignment explanation
Indices: 78834216--78834345 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
78834206 ATGCTGGAAA
* * *
78834216 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
78834256 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
78834296 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
78834336 TTATATCCGG
1 TTATATCCGG
78834346 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:78852203 original size:29 final size:29
Alignment explanation
Indices: 78852164--78852243 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
78852154 CTTAATAATC
*
78852164 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
78852194 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
78852223 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
78852244 TCTCTCAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:78860114 original size:29 final size:29
Alignment explanation
Indices: 78860075--78860154 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
78860065 CTTAATAATC
*
78860075 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
78860105 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
78860134 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
78860155 TCTCTCAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:78867197 original size:46 final size:44
Alignment explanation
Indices: 78867119--78867236 Score: 130
Period size: 46 Copynumber: 2.6 Consensus size: 44
78867109 CCAACGCCAT
* * *
78867119 GTCCTAGACATGGTCTTACACTGACACATCTCGTAG-CCGATGCAC
1 GTCCCAGACAT-GTCTTACATTGGCACATCTCG-AGACCGATGCAC
* *
78867164 GTCCCAGACATGTCTTACATTGGCTTACATCTCGGGACCGATGCAT
1 GTCCCAGACATGTCTTACATTGGC--ACATCTCGAGACCGATGCAC
* *
78867210 ATCCCAGACATATCTTACATTGGCACA
1 GTCCCAGACATGTCTTACATTGGCACA
78867237 CAAATACCCG
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
44 14 0.22
45 11 0.17
46 38 0.60
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (44 bp):
GTCCCAGACATGTCTTACATTGGCACATCTCGAGACCGATGCAC
Found at i:78867671 original size:94 final size:94
Alignment explanation
Indices: 78867510--78867701 Score: 375
Period size: 94 Copynumber: 2.0 Consensus size: 94
78867500 TACAATATCA
*
78867510 TCAACCTAAACTTTAATACAATCATGGAAAGATAGATTTTCAAGTATATAACAATGGCATAAATA
1 TCAACCTAAACTTTAATACAATCATGGAAAGATAGATTTTCAAGTATACAACAATGGCATAAATA
78867575 TCATGCTCATTTAATCACACGGACTTACC
66 TCATGCTCATTTAATCACACGGACTTACC
78867604 TCAACCTAAACTTTAATACAATCATGGAAAGATAGATTTTCAAGTATACAACAATGGCATAAATA
1 TCAACCTAAACTTTAATACAATCATGGAAAGATAGATTTTCAAGTATACAACAATGGCATAAATA
78867669 TCATGCTCATTTAATCACACGGACTTACC
66 TCATGCTCATTTAATCACACGGACTTACC
78867698 TCAA
1 TCAA
78867702 ATGCAATTTC
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 97 1.00
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (94 bp):
TCAACCTAAACTTTAATACAATCATGGAAAGATAGATTTTCAAGTATACAACAATGGCATAAATA
TCATGCTCATTTAATCACACGGACTTACC
Found at i:78871948 original size:20 final size:21
Alignment explanation
Indices: 78871915--78871956 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
78871905 AGAATGAAAG
*
78871915 AAGAAAGGTAAAAGGATTAGAA
1 AAGAAAGG-AAAAGGACTAGAA
78871937 AAGAAAGG-AAAGGACTAGAA
1 AAGAAAGGAAAAGGACTAGAA
78871957 GATAAGAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 11 0.58
22 8 0.42
ACGTcount: A:0.60, C:0.02, G:0.29, T:0.10
Consensus pattern (21 bp):
AAGAAAGGAAAAGGACTAGAA
Found at i:78877330 original size:25 final size:25
Alignment explanation
Indices: 78877286--78877440 Score: 190
Period size: 25 Copynumber: 6.2 Consensus size: 25
78877276 AGGAAGTGTA
* *
78877286 AAAGGGCTTACGCCTCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
* *
78877311 ATAGGGCTTATGCCCTAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
78877336 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
78877361 AAAGGGCTTATGCCCCAGTTATTA-
1 AAAGGGCTTATGCCCCAGTTATGAT
*
78877385 AAAGGGCTTATGCCCCAGTTATTA-
1 AAAGGGCTTATGCCCCAGTTATGAT
*
78877409 AAAGAGGC-TAGGCCTCCAGTTATATGAT
1 AAAG-GGCTTATGCC-CCAG-T-TATGAT
78877437 AAAG
1 AAAG
78877441 CAGCTATGTT
Statistics
Matches: 116, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
24 33 0.28
25 74 0.64
26 1 0.01
27 4 0.03
28 4 0.03
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (25 bp):
AAAGGGCTTATGCCCCAGTTATGAT
Found at i:78877660 original size:31 final size:31
Alignment explanation
Indices: 78877625--78877687 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
78877615 CGTTTACAGT
78877625 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
78877656 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
78877687 A
1 A
78877688 GTGTGAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:78879194 original size:49 final size:47
Alignment explanation
Indices: 78879085--78879206 Score: 140
Period size: 49 Copynumber: 2.6 Consensus size: 47
78879075 TAATGTCGAT
* * * *
78879085 GCCATGTCCCAGA-ATGGTCTTACACTGGCTCATCCATCAAGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGGCGAC
* * *
78879131 GCCATGTCCTAGACATGGTCTTACGCTGACT-ATCGAAATCGAGGCTGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATC--AATCAAGGC-GAC
78879180 GCCATGTCCCAGACATGGTCTTACACT
1 GCCATGTCCCAGACATGGTCTTACACT
78879207 AGCTCTCACA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
46 15 0.24
47 15 0.24
48 6 0.10
49 27 0.43
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGGCGAC
Found at i:78884014 original size:24 final size:24
Alignment explanation
Indices: 78883986--78884039 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
78883976 TCTTTCTAAA
*
78883986 ATATTTAGTATTTATTAGTATAAT
1 ATATTTAGTATTTATTAGCATAAT
78884010 ATATTTAGTATTTATTAGCATAAT
1 ATATTTAGTATTTATTAGCATAAT
*
78884034 TTATTT
1 ATATTT
78884040 GACCTACAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.56
Consensus pattern (24 bp):
ATATTTAGTATTTATTAGCATAAT
Found at i:78884726 original size:2 final size:2
Alignment explanation
Indices: 78884714--78884750 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
78884704 GGAATATTTG
78884714 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78884751 GATTGATAAC
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:78888989 original size:24 final size:24
Alignment explanation
Indices: 78888962--78889007 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
78888952 GGTCAAATAA
* *
78888962 ATTATGCTAATAAATACTAAATGT
1 ATTATACTAATAAATACCAAATGT
78888986 ATTATACTAATAAATACCAAAT
1 ATTATACTAATAAATACCAAAT
78889008 ATTTTAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.50, C:0.11, G:0.04, T:0.35
Consensus pattern (24 bp):
ATTATACTAATAAATACCAAATGT
Found at i:78891562 original size:14 final size:14
Alignment explanation
Indices: 78891538--78891575 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
78891528 GAATCTTGTA
78891538 AGAAGAGAGAGAGAG
1 AGAA-AGAGAGAGAG
*
78891553 ATAAAGAGAGAGAG
1 AGAAAGAGAGAGAG
78891567 AGAAAGAGA
1 AGAAAGAGA
78891576 AAGCATATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 18 0.86
15 3 0.14
ACGTcount: A:0.58, C:0.00, G:0.39, T:0.03
Consensus pattern (14 bp):
AGAAAGAGAGAGAG
Found at i:78891872 original size:10 final size:10
Alignment explanation
Indices: 78891857--78891896 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
78891847 ATTAACATGT
78891857 TTAATTTTAA
1 TTAATTTTAA
78891867 TTAATTTTATAA
1 TTAA-TTT-TAA
*
78891879 TAAATTTTAA
1 TTAATTTTAA
78891889 TTAATTTT
1 TTAATTTT
78891897 GTTCATTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
10 14 0.54
11 6 0.23
12 6 0.23
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
TTAATTTTAA
Found at i:78918055 original size:13 final size:13
Alignment explanation
Indices: 78918037--78918061 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78918027 TTTCAAACAT
78918037 AATTAATTTGTTG
1 AATTAATTTGTTG
78918050 AATTAATTTGTT
1 AATTAATTTGTT
78918062 CAGCCACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
AATTAATTTGTTG
Found at i:78918146 original size:26 final size:26
Alignment explanation
Indices: 78918090--78918146 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
78918080 TGCTTGAATA
* * *
78918090 CAAGAGAGCTGTTGATTTAGTTCTTC
1 CAAGCGAGCTGCTGATTTAGTTCTCC
*
78918116 AAAGCGAGCTGCTGATTTAGTTCTCC
1 CAAGCGAGCTGCTGATTTAGTTCTCC
78918142 CAAGC
1 CAAGC
78918147 ATCCCTTTGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
CAAGCGAGCTGCTGATTTAGTTCTCC
Found at i:78919390 original size:18 final size:18
Alignment explanation
Indices: 78919356--78919390 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
78919346 TTTGAATTTT
*
78919356 TAAAAAAAAATTCAAGTA
1 TAAAAAAAAAGTCAAGTA
*
78919374 TAAAAAAAAAGTGAAGT
1 TAAAAAAAAAGTCAAGT
78919391 GTTGGAATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.66, C:0.03, G:0.11, T:0.20
Consensus pattern (18 bp):
TAAAAAAAAAGTCAAGTA
Found at i:78921232 original size:18 final size:18
Alignment explanation
Indices: 78921209--78921243 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
78921199 TGGCCCATTA
78921209 CAGTAACAGTAAATAGTG
1 CAGTAACAGTAAATAGTG
*
78921227 CAGTAATAGTAAATAGT
1 CAGTAACAGTAAATAGT
78921244 ATGCAGGTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.09, G:0.20, T:0.26
Consensus pattern (18 bp):
CAGTAACAGTAAATAGTG
Found at i:78923015 original size:27 final size:27
Alignment explanation
Indices: 78922984--78923106 Score: 140
Period size: 27 Copynumber: 4.6 Consensus size: 27
78922974 ACACATCGTA
78922984 GGGTATTTCGGTCATTTTACCTTATAG
1 GGGTATTTCGGTCATTTTACCTTATAG
* * *
78923011 GGGTATTACAGTCATTGTACCTTATAG
1 GGGTATTTCGGTCATTTTACCTTATAG
* * * *
78923038 AGGTATTTCGATCA-TTTACCTTTTGG
1 GGGTATTTCGGTCATTTTACCTTATAG
* * *
78923064 GGGTATTTTGGTCGTTTTACCCTATAG
1 GGGTATTTCGGTCATTTTACCTTATAG
*
78923091 GGGTATTTCAGTCATT
1 GGGTATTTCGGTCATT
78923107 ATTTCAGCCC
Statistics
Matches: 75, Mismatches: 20, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
26 19 0.25
27 56 0.75
ACGTcount: A:0.20, C:0.15, G:0.23, T:0.43
Consensus pattern (27 bp):
GGGTATTTCGGTCATTTTACCTTATAG
Found at i:78923090 original size:53 final size:54
Alignment explanation
Indices: 78922985--78923099 Score: 133
Period size: 53 Copynumber: 2.1 Consensus size: 54
78922975 CACATCGTAG
* *
78922985 GGTATTTCGGTCATTTTACCTTATAGGGGTATTACAGTCATTGTACCTTATAGA
1 GGTATTTCGATCATTTTACCTTATAGGGGTATTACAGTCATTGTACCCTATAGA
* * *** * * *
78923039 GGTATTTCGATCA-TTTACCTTTTGGGGGTATTTTGGTCGTTTTACCCTATAGG
1 GGTATTTCGATCATTTTACCTTATAGGGGTATTACAGTCATTGTACCCTATAGA
78923092 GGTATTTC
1 GGTATTTC
78923100 AGTCATTATT
Statistics
Matches: 51, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
53 39 0.76
54 12 0.24
ACGTcount: A:0.19, C:0.15, G:0.23, T:0.43
Consensus pattern (54 bp):
GGTATTTCGATCATTTTACCTTATAGGGGTATTACAGTCATTGTACCCTATAGA
Found at i:78929629 original size:41 final size:41
Alignment explanation
Indices: 78929583--78929752 Score: 126
Period size: 41 Copynumber: 4.1 Consensus size: 41
78929573 TTTTTCTTAA
* * *
78929583 AAACGCCGCATAAGGTAAGGCAATAGCGGCGTTTCTCTCGT
1 AAACGCCGCAAAAGGTAAGGCAATAGCGGCGTTTCTCCCAT
** * * * *
78929624 AAACGCCATAAAAGGTAAGGCAATAACGACATTTTTCCCAT
1 AAACGCCGCAAAAGGTAAGGCAATAGCGGCGTTTCTCCCAT
* * * * * *
78929665 AAATGCTGCAAAAGGTAAGGCAATAGTGGCGTTTTTACTAT
1 AAACGCCGCAAAAGGTAAGGCAATAGCGGCGTTTCTCCCAT
*** * * **
78929706 AAACATTGCAAAAAGTAAAGCAATAGTAGCGTCTTC-CCCAT
1 AAACGCCGCAAAAGGTAAGGCAATAGCGGCGT-TTCTCCCAT
78929747 AAACGC
1 AAACGC
78929753 TGTGAATTTT
Statistics
Matches: 98, Mismatches: 30, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
41 96 0.98
42 2 0.02
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (41 bp):
AAACGCCGCAAAAGGTAAGGCAATAGCGGCGTTTCTCCCAT
Found at i:78930313 original size:50 final size:49
Alignment explanation
Indices: 78930221--78930321 Score: 166
Period size: 50 Copynumber: 2.0 Consensus size: 49
78930211 TTTAGTTATT
78930221 TTAGTTTAATTAATTAAGTTGCTTTAATTGTCTTTAGTTGCTTAAATAA
1 TTAGTTTAATTAATTAAGTTGCTTTAATTGTCTTTAGTTGCTTAAATAA
** *
78930270 TTAGTTTAATTAATTAAGTTATTTTTAATTTTCTTTAGTTGCTTAAATAA
1 TTAGTTTAATTAATTAAGTT-GCTTTAATTGTCTTTAGTTGCTTAAATAA
78930320 TT
1 TT
78930322 TCGGCAATTA
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
49 20 0.42
50 28 0.58
ACGTcount: A:0.31, C:0.05, G:0.10, T:0.54
Consensus pattern (49 bp):
TTAGTTTAATTAATTAAGTTGCTTTAATTGTCTTTAGTTGCTTAAATAA
Found at i:78930386 original size:17 final size:17
Alignment explanation
Indices: 78930364--78930396 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
78930354 TTGCTACAAT
*
78930364 CATTTACCTTGTTTAAA
1 CATTTAACTTGTTTAAA
78930381 CATTTAACTTGTTTAA
1 CATTTAACTTGTTTAA
78930397 TTGTGCTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.15, G:0.06, T:0.48
Consensus pattern (17 bp):
CATTTAACTTGTTTAAA
Found at i:78934508 original size:29 final size:29
Alignment explanation
Indices: 78934471--78934547 Score: 127
Period size: 29 Copynumber: 2.7 Consensus size: 29
78934461 ATTCATATTC
*
78934471 ATATGGCCCATTAGGCCCAAATCACCTGT
1 ATATGGCCCATTAGGCCCAAATCACATGT
*
78934500 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATGT
*
78934529 ATATGGCCCGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
78934548 GTCACATTCA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATGT
Found at i:78940591 original size:29 final size:29
Alignment explanation
Indices: 78940557--78940634 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
78940547 GTGACGAGAT
* *
78940557 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
78940586 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
78940615 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
78940635 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:78950015 original size:46 final size:46
Alignment explanation
Indices: 78949965--78950137 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
78949955 TGGTTGAGCA
*
78949965 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
78950011 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
78950058 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
78950104 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
78950138 GGGCGGGTTA
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 62 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:78950121 original size:93 final size:93
Alignment explanation
Indices: 78949962--78950132 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
78949952 GGATGGTTGA
* *
78949962 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
78950027 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
78950055 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
78950120 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
78950133 ACTTAGGGCG
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:78956793 original size:46 final size:45
Alignment explanation
Indices: 78956743--78956912 Score: 179
Period size: 46 Copynumber: 3.8 Consensus size: 45
78956733 TGGTTGAGCA
*
78956743 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA-G
* * * *
78956789 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A-G
*
78956834 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAG
* *
78956880 CCCGAGCTCATTGAGTTGAGT-CGAGTTCACTTA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTA
78956913 GGGGGGGTTA
Statistics
Matches: 106, Mismatches: 11, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
43 18 0.17
44 19 0.18
45 4 0.04
46 29 0.27
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (45 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAG
Done.