Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 274 of 444
Found at i:78958484 original size:79 final size:80
Alignment explanation
Indices: 78958315--78958540 Score: 271
Period size: 79 Copynumber: 2.9 Consensus size: 80
78958305 TTCTAACATG
* * * * *
78958315 AGCCTACGGGTCTTT-AACCCGGATTCCATTCCAG-TACGAAGCCTGCGGGTCTTTAAACCCGTA
1 AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAGCT-TGAAGCCTGCGAGTCTTTAAACCCGAA
* *
78958378 TACAATTCCAGCATAT
65 TACAATTCCAGCACAA
* * *
78958394 AGCCTGCGGGTCTTTAAAACCGGATACCATTCCAGCTTGAAGCCTGCAAGTCTTTAAGCCCGAAT
1 AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAGCTTGAAGCCTGCGAGTCTTTAAACCCGAAT
78958459 ACAATT-CAGCACAA
66 ACAATTCCAGCACAA
* * * * *
78958473 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAT-ATAGCCTACGAGTCTTTAAACCCAAA
1 AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAGCTTGA-AGCCTGCGAGTCTTTAAACCCGAA
78958537 TACA
65 TACA
78958541 CACATCAAAT
Statistics
Matches: 126, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
78 1 0.01
79 78 0.62
80 46 0.37
81 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (80 bp):
AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAGCTTGAAGCCTGCGAGTCTTTAAACCCGAAT
ACAATTCCAGCACAA
Found at i:78958540 original size:40 final size:40
Alignment explanation
Indices: 78958315--78958540 Score: 217
Period size: 40 Copynumber: 5.7 Consensus size: 40
78958305 TTCTAACATG
* * * * * *
78958315 AGCCTACGGGTCTTT-AACCCGGATTCCATTCCAGTACGA-
1 AGCCTGCGGGTCTTTAAACCCGAATACAATTCCAGCA-TAT
*
78958354 AGCCTGCGGGTCTTTAAACCCGTATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAACCCGAATACAATTCCAGCATAT
* * * *
78958394 AGCCTGCGGGTCTTTAAAACCGGATACCATTCCAGCTTGA-
1 AGCCTGCGGGTCTTTAAACCCGAATACAATTCCAGCAT-AT
** * * *
78958434 AGCCTGCAAGTCTTTAAGCCCGAATACAATT-CAGCACAA
1 AGCCTGCGGGTCTTTAAACCCGAATACAATTCCAGCATAT
* *
78958473 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAACCCGAATACAATTCCAGCATAT
* * *
78958513 AGCCTACGAGTCTTTAAACCCAAATACA
1 AGCCTGCGGGTCTTTAAACCCGAATACA
78958541 CACATCAAAT
Statistics
Matches: 154, Mismatches: 28, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
38 1 0.01
39 47 0.31
40 105 0.68
41 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAACCCGAATACAATTCCAGCATAT
Found at i:78969959 original size:22 final size:22
Alignment explanation
Indices: 78969934--78969981 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
78969924 CATTCAAGGT
78969934 ACGTGGCTAAGGAGATCACAGC
1 ACGTGGCTAAGGAGATCACAGC
78969956 ACGTGGCTAAGGAGATCACAGC
1 ACGTGGCTAAGGAGATCACAGC
78969978 ACGT
1 ACGT
78969982 TTAGTACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.31, T:0.15
Consensus pattern (22 bp):
ACGTGGCTAAGGAGATCACAGC
Found at i:78972859 original size:27 final size:27
Alignment explanation
Indices: 78972829--78973060 Score: 311
Period size: 27 Copynumber: 8.6 Consensus size: 27
78972819 ATAATGTTCT
* *
78972829 TGTAGGGTAACATGACCATAATACCCC
1 TGTAGGGTAAAATGACCGTAATACCCC
78972856 TGTAGGGTAAAATGACCGTAATACCCC
1 TGTAGGGTAAAATGACCGTAATACCCC
* *
78972883 TGTAGGGCAAAATGACCGTAATGCCCC
1 TGTAGGGTAAAATGACCGTAATACCCC
* * *
78972910 TGTAGGATAAAATGACTGTAATACCCT
1 TGTAGGGTAAAATGACCGTAATACCCC
* *
78972937 TATAGGGTAAAATGACTGTAATACCCC
1 TGTAGGGTAAAATGACCGTAATACCCC
* *
78972964 TGTAGGGTAAAATAACCGTAATGCCCC
1 TGTAGGGTAAAATGACCGTAATACCCC
* *
78972991 TGTAGGGTAAAATGACCGTAGTGCCCC
1 TGTAGGGTAAAATGACCGTAATACCCC
* * *
78973018 TATAGGGTAAAATGGCCGTAATACCCT
1 TGTAGGGTAAAATGACCGTAATACCCC
*
78973045 TGTATGGTAAAATGAC
1 TGTAGGGTAAAATGAC
78973061 GATTATGCCC
Statistics
Matches: 179, Mismatches: 26, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 179 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
TGTAGGGTAAAATGACCGTAATACCCC
Found at i:78973287 original size:27 final size:27
Alignment explanation
Indices: 78973196--78973296 Score: 87
Period size: 27 Copynumber: 3.8 Consensus size: 27
78973186 ATGGAGGAAG
* *
78973196 TACTG-TACTGGTGACTATGTCACATT
1 TACTGTTACTGGTGGCTATGCCACATT
* * * *
78973222 CACTATTACTGGTGGCTATGCCATAAT
1 TACTGTTACTGGTGGCTATGCCACATT
* * *
78973249 TATTGATACTGGTGGCTTTGCCACATT
1 TACTGTTACTGGTGGCTATGCCACATT
* **
78973276 TACTGTTTCTGGCAGCTATGC
1 TACTGTTACTGGTGGCTATGC
78973297 TGCATTATTA
Statistics
Matches: 55, Mismatches: 19, Indels: 1
0.73 0.25 0.01
Matches are distributed among these distances:
26 3 0.05
27 52 0.95
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
TACTGTTACTGGTGGCTATGCCACATT
Found at i:78973474 original size:28 final size:27
Alignment explanation
Indices: 78973443--78973502 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 27
78973433 ACTGTATTGA
* *
78973443 TACTGCATTGGGCTTAGGCCCACACTG
1 TACTGCATAGGGCTCAGGCCCACACTG
* *
78973470 TTACTGTATAGGGCTCAGGCCCAGACTG
1 -TACTGCATAGGGCTCAGGCCCACACTG
78973498 TACTG
1 TACTG
78973503 ATACTGAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 5 0.18
28 23 0.82
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (27 bp):
TACTGCATAGGGCTCAGGCCCACACTG
Found at i:78973514 original size:33 final size:33
Alignment explanation
Indices: 78973466--78973529 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
78973456 TTAGGCCCAC
* *
78973466 ACTGTTACTGTATAGGGCTCAGGCCCAGACTGT
1 ACTGATACTGAATAGGGCTCAGGCCCAGACTGT
*
78973499 ACTGATACTGAATAGGGCTCAGGCCTAGACT
1 ACTGATACTGAATAGGGCTCAGGCCCAGACT
78973530 ATTACCTATC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (33 bp):
ACTGATACTGAATAGGGCTCAGGCCCAGACTGT
Found at i:78974335 original size:30 final size:28
Alignment explanation
Indices: 78974301--78974360 Score: 86
Period size: 30 Copynumber: 2.1 Consensus size: 28
78974291 CACTTTAAAG
78974301 CACTTTTACACATTT-GTCCTATTATTTCAT
1 CACTTTTACA-ATTTAGTCC--TTATTTCAT
78974331 CACTTTTACAATTTAGTCCTTATTTCAT
1 CACTTTTACAATTTAGTCCTTATTTCAT
78974359 CA
1 CA
78974361 AAACACAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
28 11 0.38
29 4 0.14
30 14 0.48
ACGTcount: A:0.25, C:0.23, G:0.03, T:0.48
Consensus pattern (28 bp):
CACTTTTACAATTTAGTCCTTATTTCAT
Found at i:78978920 original size:48 final size:47
Alignment explanation
Indices: 78978845--78978991 Score: 190
Period size: 48 Copynumber: 3.1 Consensus size: 47
78978835 GACATTGGCT
* * *
78978845 GATAAGTGTGCTAGTGTAAGACATGTCTGGGACATGTATCGGCTTCGA
1 GATATGTGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGC-TCGA
*
78978893 GATATGTGCGCTAGTGTAAGACATGTCTGGGACATGCATCGGC-C-A
1 GATATGTGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTCGA
* * *
78978938 CATTATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCGTCGA
1 GA-TATGTGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGC-TCGA
78978987 GATAT
1 GATAT
78978992 ACAAGGTAGT
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
45 2 0.02
46 39 0.45
48 44 0.51
49 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (47 bp):
GATATGTGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTCGA
Found at i:78978972 original size:46 final size:47
Alignment explanation
Indices: 78978857--78978991 Score: 175
Period size: 46 Copynumber: 2.9 Consensus size: 47
78978847 TAAGTGTGCT
* * * * *
78978857 AGTGTAAGACATGTCTGGGACATGTATCGGCTTCGAGATATGTGCGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-TCGACATATGAGAGCC
78978905 AGTGTAAGACATGTCTGGGACATGCATCGGC-C-ACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTCGACA-TATGAGAGCC
*
78978951 AGTGTAAGACATGTCTGGGACATGCATCGGCGTCGAGATAT
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-TCGACATAT
78978992 ACAAGGTAGT
Statistics
Matches: 77, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
45 2 0.03
46 39 0.51
48 34 0.44
49 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTCGACATATGAGAGCC
Found at i:78980966 original size:28 final size:27
Alignment explanation
Indices: 78980903--78980972 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
78980893 ATAGTGAGTC
*
78980903 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
78980930 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
78980958 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
78980973 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:78988884 original size:27 final size:28
Alignment explanation
Indices: 78988840--78988937 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
78988830 ATAGTGAGTC
78988840 CGCACAC-TAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
78988866 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
78988894 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
78988924 CGCACACTTAGTGC
1 CGCACACTTAGTGC
78988938 CATTCTCATG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
26 7 0.11
27 14 0.23
28 22 0.35
30 19 0.31
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:78995255 original size:15 final size:15
Alignment explanation
Indices: 78995202--78995276 Score: 69
Period size: 15 Copynumber: 5.0 Consensus size: 15
78995192 TGGAGATAAC
* *
78995202 AAGAAAACCAAAATA
1 AAGAAATCCAAGATA
* *
78995217 AAGAAATCCATGACA
1 AAGAAATCCAAGATA
* *
78995232 GAGGAATCCAAGATA
1 AAGAAATCCAAGATA
* *
78995247 AAGATATCCAAGGTA
1 AAGAAATCCAAGATA
*
78995262 CAGAAATCCAAGATA
1 AAGAAATCCAAGATA
78995277 CCATGTCATA
Statistics
Matches: 45, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.55, C:0.16, G:0.16, T:0.13
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:79007435 original size:96 final size:91
Alignment explanation
Indices: 79007250--79007468 Score: 212
Period size: 96 Copynumber: 2.3 Consensus size: 91
79007240 CTGATGCCAT
* *
79007250 GTCCCAGACATGGTCTTACACTGGCTCATCCATTAAGTTGATGTCATGTCCCAGACATGGCCTTA
1 GTCCCAGACATGGTCTTACACTGGCTC-TCCATTAAGTTGATGCCATGTCCCAGACATGGCATTA
79007315 CACTGACAATCAAAATCGAGGCTGACGC-C
65 CACTGACAATC---ATCGAGGCTGACGCAC
* ** *
79007344 TAGTCCCAGACATGGTCTTACACTAGCTCTCACATATCGGTGTCGATGCCATGTCCTAGACATGG
1 --GTCCCAGACATGGTCTTACACTGGCTCTC-CAT-TAAGT-T-GATGCCATGTCCCAGACATGG
* * *
79007409 TATTATACTGACACATC-TCGTA-GCTGATGCAC
60 CATTACACTGACA-ATCATCG-AGGCTGACGCAC
*
79007441 GTCCCAGACAT-GTCTTTCACTGGCTCTC
1 GTCCCAGACATGGTCTTACACTGGCTCTC
79007469 GTATTAATGC
Statistics
Matches: 105, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
94 15 0.14
95 13 0.12
96 39 0.37
97 5 0.05
98 1 0.01
99 29 0.28
100 3 0.03
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (91 bp):
GTCCCAGACATGGTCTTACACTGGCTCTCCATTAAGTTGATGCCATGTCCCAGACATGGCATTAC
ACTGACAATCATCGAGGCTGACGCAC
Found at i:79010091 original size:15 final size:15
Alignment explanation
Indices: 79010055--79010110 Score: 55
Period size: 15 Copynumber: 3.7 Consensus size: 15
79010045 ATCCATAACG
79010055 AAGAAATCCAGAATAT
1 AAGAAATCCA-AATAT
79010071 AA-AAATCCAACATA-
1 AAGAAATCCAA-ATAT
*
79010085 AAGAAATCCAAA-AC
1 AAGAAATCCAAATAT
79010099 AAGAAAATCCAA
1 AAG-AAATCCAA
79010111 TCACGATACC
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
13 1 0.03
14 7 0.19
15 26 0.72
16 2 0.06
ACGTcount: A:0.62, C:0.18, G:0.07, T:0.12
Consensus pattern (15 bp):
AAGAAATCCAAATAT
Found at i:79017301 original size:48 final size:48
Alignment explanation
Indices: 79017191--79017405 Score: 151
Period size: 46 Copynumber: 4.6 Consensus size: 48
79017181 TGATATATGC
* * * *
79017191 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CT-ACA-TTATGA-GA
1 GCTAGTGTAAGACATGTCTAGGACATGCATTGGCCTCA-AGATAT-ACAA
*
79017237 GCCAGTGTAAGACATGTCTAGGACATGCATTGGCCTCAAGATATACAA
1 GCTAGTGTAAGACATGTCTAGGACATGCATTGGCCTCAAGATATACAA
* * * * ** ** *
79017285 GCTAATGTAAGACATGTTTGGGACATGC-TTCGGCATTTAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTAGGACATGCATT-GGCCTCAAGATATACAA
* * *
79017331 GCTAGTGTAAGACATGT-TTGTGACATGCATTAGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTAG-GACATGCATTGGCCTCAAGATATACAA
* *
79017379 GGTAGTGTAAGACCTGTCTTA-GACATG
1 GCTAGTGTAAGACATGTC-TAGGACATG
79017406 GCGTCAGCTT
Statistics
Matches: 131, Mismatches: 27, Indels: 20
0.74 0.15 0.11
Matches are distributed among these distances:
45 2 0.02
46 60 0.46
47 10 0.08
48 58 0.44
50 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATTGGCCTCAAGATATACAA
Found at i:79017343 original size:94 final size:94
Alignment explanation
Indices: 79017191--79017397 Score: 267
Period size: 94 Copynumber: 2.2 Consensus size: 94
79017181 TGATATATGC
*
79017191 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACATTATGAGAGCCAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACATTACGAGAGCCAGTGTAAGACATGT-T
*
79017256 AG-GACATGCATTGGCCTCAAGATATACAA
65 AGTGACATGCATTAGCCTCAAGATATACAA
* * * * *
79017285 GCTAATGTAAGACATGTTTGGGACATGCTTCGGC-A-TTTAGACGAGAGCTAGTGTAAGACATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACATT--ACGAGAGCCAGTGTAAGACATGT
* *
79017348 TTGTGACATGCATTAGCCTCGAGATATACAA
64 TAGTGACATGCATTAGCCTCAAGATATACAA
* *
79017379 GGTAGTGTAAGACCTGTCT
1 GCTAGTGTAAGACATGTCT
79017398 TAGACATGGC
Statistics
Matches: 97, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
92 2 0.02
93 3 0.03
94 92 0.95
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACATTACGAGAGCCAGTGTAAGACATGTTA
GTGACATGCATTAGCCTCAAGATATACAA
Found at i:79017481 original size:49 final size:50
Alignment explanation
Indices: 79017425--79017555 Score: 149
Period size: 49 Copynumber: 2.7 Consensus size: 50
79017415 TGTTGTGTGT
* * *
79017425 CAGTGTAAGACCTATCTAGGACATGGTATCGACACT-GGTAGATGAGAGC
1 CAGTGTAAGACCTATCTAGGACATGGTATCGACACTCGATAGATGAAAGA
* * * * *
79017474 CAGTGTAAGGCCTATCTGGGACACGGTATC-ACCCTCGATATATGAAAGA
1 CAGTGTAAGACCTATCTAGGACATGGTATCGACACTCGATAGATGAAAGA
* * *
79017523 TAGTGTAAGACCTGTCTAGGACATGGCATCGAC
1 CAGTGTAAGACCTATCTAGGACATGGTATCGAC
79017556 TTTGATGTGC
Statistics
Matches: 66, Mismatches: 14, Indels: 3
0.80 0.17 0.04
Matches are distributed among these distances:
48 4 0.06
49 60 0.91
50 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.23
Consensus pattern (50 bp):
CAGTGTAAGACCTATCTAGGACATGGTATCGACACTCGATAGATGAAAGA
Found at i:79031336 original size:49 final size:49
Alignment explanation
Indices: 79031269--79032435 Score: 1881
Period size: 49 Copynumber: 24.1 Consensus size: 49
79031259 TTTACCACAT
*
79031269 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
79031318 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79031367 ATATATATACACTTTCACATTCATCA-------C---AGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79031406 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79031455 ATATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 --ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79031506 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* * *
79031555 ATATATATACACTTTCACATTCATCACATCGGCCATTTGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79031604 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79031653 ATATATATACATTTTCACATTCATCACCTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
79031702 ATATATATACACTTTCACATTCATCACGTCGGCCCTTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
79031751 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79031800 ATATATATACACTTTCACATTCATCA-------C---AGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79031839 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79031888 ATATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 --ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79031939 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* * *
79031988 ATATATATACACTTTCACATTCATCACATCGGCCATTTGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79032037 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79032086 ATATATATACATTTTCACATTCATCACCTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
79032135 ATATATATACACTTTCACATTCATCACGTCGGCCCTTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
79032184 ATATATATACA-TTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
79032232 ATATATATATACATTTTCACATTCATCACCTCGGCCATTAGGCTTTATCAC
1 --ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79032283 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79032332 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79032381 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
79032430 ATATAT
1 ATATAT
79032436 TATTATGTAC
Statistics
Matches: 1058, Mismatches: 33, Indels: 54
0.92 0.03 0.05
Matches are distributed among these distances:
39 76 0.07
42 2 0.00
46 2 0.00
48 36 0.03
49 802 0.76
50 11 0.01
51 129 0.12
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:79032072 original size:433 final size:433
Alignment explanation
Indices: 79031269--79032435 Score: 2160
Period size: 433 Copynumber: 2.7 Consensus size: 433
79031259 TTTACCACAT
*
79031269 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTC
1 ATATATATACACTTTCACATTCATCACGTCGGCCCTTAGGCCTTATCACATATATATACATTTTC
79031334 ACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAGGCC
66 ACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAGGCC
79031399 TTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATA
131 TTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATA
79031464 TACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
196 TACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
79031529 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTTG
261 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTTG
79031594 GCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
326 GCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
79031659 ATACATTTTCACATTCATCACCTCGGCCATTAGGCCTTATCAC
391 ATACATTTTCACATTCATCACCTCGGCCATTAGGCCTTATCAC
79031702 ATATATATACACTTTCACATTCATCACGTCGGCCCTTAGGCCTTATCACATATATATACATTTTC
1 ATATATATACACTTTCACATTCATCACGTCGGCCCTTAGGCCTTATCACATATATATACATTTTC
79031767 ACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAGGCC
66 ACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAGGCC
79031832 TTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATA
131 TTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATA
79031897 TACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
196 TACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
79031962 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTTG
261 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTTG
79032027 GCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
326 GCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
79032092 ATACATTTTCACATTCATCACCTCGGCCATTAGGCCTTATCAC
391 ATACATTTTCACATTCATCACCTCGGCCATTAGGCCTTATCAC
79032135 ATATATATACACTTTCACATTCATCACGTCGGCCCTTAGGCCTTATCACATATATATACA-TTTC
1 ATATATATACACTTTCACATTCATCACGTCGGCCCTTAGGCCTTATCACATATATATACATTTTC
*
79032199 ACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATATACATTTTCACATTCATCACCTC
66 ACATTCATCACGTCGGCCATTAGGCCTTATCAC--ATATATATACACTTTCACATTCATCA----
*
79032264 GGCCATTAGGCTTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTAT
125 ---C---AGGCCTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTAT
* *
79032329 CAC--ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACA
184 CACATATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
79032392 TTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
249 TTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
79032436 TATTATGTAC
Statistics
Matches: 717, Mismatches: 5, Indels: 15
0.97 0.01 0.02
Matches are distributed among these distances:
432 37 0.05
433 492 0.69
434 25 0.03
441 1 0.00
442 102 0.14
444 60 0.08
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (433 bp):
ATATATATACACTTTCACATTCATCACGTCGGCCCTTAGGCCTTATCACATATATATACATTTTC
ACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAGGCC
TTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATA
TACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTTG
GCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
ATACATTTTCACATTCATCACCTCGGCCATTAGGCCTTATCAC
Found at i:79035201 original size:40 final size:40
Alignment explanation
Indices: 79035151--79035274 Score: 133
Period size: 40 Copynumber: 3.1 Consensus size: 40
79035141 CGGAATTTAA
* *
79035151 CCGGATATAGTGACTCGCTCAATTGTCTTCGGGACA-TAGC
1 CCGGATATAGTGACTCGCACAATTGCCTTCGGGA-ATTAGC
* *
79035191 CCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGC
1 CCGGATATAGTGACTCGCACAATTGCCTTCGGGAATTAGC
* * * ** *
79035231 CCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTGAC-TCGCACAATTGCCTTCGGGAATTAGC
79035272 CCG
1 CCG
79035275 AATACCATTC
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.01
40 44 0.63
41 25 0.36
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAGTGACTCGCACAATTGCCTTCGGGAATTAGC
Found at i:79035264 original size:41 final size:40
Alignment explanation
Indices: 79035177--79035274 Score: 110
Period size: 41 Copynumber: 2.4 Consensus size: 40
79035167 GCTCAATTGT
* * **
79035177 CTTCGGGACA-TAGCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGA-ATTAGCCCGGTTATAGTCATTAGCACAAAAGC
79035217 CTTCGGGAATTAGCCCGGATT-TAGTCACTTAGCACAAAAGC
1 CTTCGGGAATTAGCCCGG-TTATAGTCA-TTAGCACAAAAGC
*
79035258 CTTCGGGACTTAGCCCG
1 CTTCGGGAATTAGCCCG
79035275 AATACCATTC
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
39 1 0.02
40 21 0.42
41 28 0.56
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGAATTAGCCCGGTTATAGTCATTAGCACAAAAGC
Found at i:79036069 original size:40 final size:40
Alignment explanation
Indices: 79036020--79036331 Score: 444
Period size: 40 Copynumber: 7.8 Consensus size: 40
79036010 CCAGCATGAT
* * *
79036020 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCATTAGCACGAA
* *
79036060 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCATTAGCACGAA
* * *
79036100 TGCTCTTCGAAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCATTAGCACGAA
* * *
79036140 TGCTCTTCGGAATTTAGCTCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCATTAGCACGAA
** * *
79036180 TGCTCTTCGGAACTTAGCTGGGATATATCATTAGCATGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCATTAGCACGAA
* * *
79036220 TGCTCTTCGAAACTTAGTCTGGATACATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCATTAGCACGAA
*
79036260 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCATTAGCACGAA
*
79036300 TGCTCTTCGGAACTTAGTCCGGATACATCATT
1 TGCTCTTCGGAACTTAGCCCGGATACATCATT
79036332 CTCAATTCTC
Statistics
Matches: 251, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 251 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCATTAGCACGAA
Found at i:79038255 original size:37 final size:36
Alignment explanation
Indices: 79038205--79038291 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
79038195 TACGAAGTCT
79038205 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
79038241 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
79038278 TCACCCGGAACATA
1 T-ACCCGG-ACATA
79038292 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:79038427 original size:49 final size:49
Alignment explanation
Indices: 79038360--79039305 Score: 1332
Period size: 49 Copynumber: 19.1 Consensus size: 49
79038350 TTTACCACAT
79038360 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
79038409 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
79038458 ATATATATACACTTTCACATTCATCA-------C---AGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79038497 ATATATTTACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
79038546 ATATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 --ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79038597 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79038646 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* ** * *
79038695 ATATATATACA-TTATCACATATATATACATTTCACATTCATCACA-TCGGCCATTAGGC-C
1 ATATATATACACTT-TCAC----AT-T-CA--TCAC-GTCGGC-CATTAGGCC-TTA-TCAC
* * * * *
79038754 TTATCACATATA-TAT-ACATTTTCACATTCATC-ACGGCCATTAGGCCTTATCAC
1 ATAT-ATATACACTTTCACA--TT--CA-TCA-CGTCGGCCATTAGGCCTTATCAC
79038807 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
79038856 ATATATATACA-TTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79038904 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79038953 ATATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 --ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
79039004 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
79039053 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79039102 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79039151 ATATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 --ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
79039202 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
79039251 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
79039300 ATATAT
1 ATATAT
79039306 TATTATGTAC
Statistics
Matches: 825, Mismatches: 32, Indels: 80
0.88 0.03 0.09
Matches are distributed among these distances:
39 37 0.04
42 1 0.00
46 1 0.00
48 51 0.06
49 513 0.62
50 2 0.00
51 144 0.17
52 8 0.01
53 13 0.02
54 12 0.01
55 7 0.01
56 5 0.01
57 4 0.00
58 10 0.01
59 10 0.01
60 7 0.01
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:79038464 original size:100 final size:98
Alignment explanation
Indices: 79038360--79039305 Score: 1337
Period size: 100 Copynumber: 9.6 Consensus size: 98
79038350 TTTACCACAT
* *
79038360 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTC
*
79038425 ACATTCATCACATCGGCCATTAGGCCTTATCAC
66 ACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
79038458 ATATATATACACTTTCACATTCATCA-------C---AGGCCTTATCACATATATTTACACTTTC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTC
79038513 ACATTCATCACGTCGGCCATTAGGCCTTATCAC
66 ACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79038546 ATATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
1 --ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTT
*
79038611 TCACATTCATCACATCGGCCATTAGGCCTTATCAC
64 TCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
79038646 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA-TTAT
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTT-T
* ** * *
79038710 CACATATATATACATTTCACATTCATCACA-TCGGCCATTAGGC-C
65 CAC----AT-T-CA--TCAC-GTCGGC-CATTAGGCC-TTA-TCAC
* * * * * ** *
79038754 TTATCACATATATATACATTTTCA-CATTCATCACGGCCATTAGGCCTTATCACATATATATACA
1 ATAT-ATATACATTTTCACATTCATCA--CGT--CGGCCATTAGGCCTTATCACATATATATACA
79038818 CTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
61 CTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79038856 ATATATATACA-TTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTC
79038920 ACATTCATCACGTCGGCCATTAGGCCTTATCAC
66 ACATTCATCACGTCGGCCATTAGGCCTTATCAC
79038953 ATATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTT
1 --ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTT
79039018 TCACATTCATCACGTCGGCCATTAGGCCTTATCAC
64 TCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
79039053 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTC
79039118 ACATTCATCACGTCGGCCATTAGGCCTTATCAC
66 ACATTCATCACGTCGGCCATTAGGCCTTATCAC
79039151 ATATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTT
1 --ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTT
79039216 TCACATTCATCACGTCGGCCATTAGGCCTTATCAC
64 TCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79039251 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATAT
79039306 TATTATGTAC
Statistics
Matches: 769, Mismatches: 40, Indels: 78
0.87 0.05 0.09
Matches are distributed among these distances:
88 58 0.08
90 25 0.03
91 1 0.00
97 71 0.09
98 239 0.31
99 13 0.02
100 247 0.32
101 8 0.01
102 11 0.01
103 9 0.01
104 6 0.01
106 6 0.01
107 9 0.01
108 13 0.02
109 13 0.02
110 3 0.00
112 35 0.05
113 2 0.00
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (98 bp):
ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTC
ACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:79038670 original size:149 final size:147
Alignment explanation
Indices: 79038360--79039305 Score: 1366
Period size: 149 Copynumber: 6.4 Consensus size: 147
79038350 TTTACCACAT
79038360 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTC
*
79038425 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA------
66 ACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACGTCGG
79038484 -C---AGGCCTTATCAC
131 CCATTAGGCCTTATCAC
*
79038497 ATATATTTACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATATACATTT
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC--ATATATATACATTT
* *
79038562 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATC
64 TCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACGTC
79038627 GGCCATTAGGCCTTATCAC
129 GGCCATTAGGCCTTATCAC
* *
79038646 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTATC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTC
* ** * * * *
79038711 ACATATATATACATTTCACATTCATCACA-TCGGCCATTAGGCCTTATCACATATATATACATTT
66 AC----AT-T-CA--TCAC-GTCGGC-CATTAGGCC-TTA----TCA-CATATATATACAC-TTT
* *
79038775 -TCA--CATTCATC-ACGGCCATTAGGCCTTATCAC
114 CACATTCA-TCA-CGTCGGCCATTAGGCCTTATCAC
79038807 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACA-TTTC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTC
*
79038871 ACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCGG
66 ACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACGTCGG
79038936 CCATTAGGCCTTATCAC
131 CCATTAGGCCTTATCAC
* *
79038953 ATATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTT
1 --ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTT
79039018 TCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACGTC
64 TCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACGTC
79039083 GGCCATTAGGCCTTATCAC
129 GGCCATTAGGCCTTATCAC
*
79039102 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATATACATTT
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC--ATATATATACATTT
79039167 TCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACGTC
64 TCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACGTC
79039232 GGCCATTAGGCCTTATCAC
129 GGCCATTAGGCCTTATCAC
* *
79039251 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATAT
79039306 TATTATGTAC
Statistics
Matches: 739, Mismatches: 29, Indels: 72
0.88 0.03 0.09
Matches are distributed among these distances:
137 48 0.06
139 75 0.10
144 3 0.00
145 13 0.02
146 26 0.04
147 74 0.10
148 59 0.08
149 289 0.39
150 5 0.01
151 10 0.01
152 5 0.01
153 2 0.00
154 2 0.00
155 5 0.01
156 10 0.01
157 5 0.01
160 7 0.01
161 84 0.11
162 14 0.02
163 3 0.00
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (147 bp):
ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTC
ACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACGTCGG
CCATTAGGCCTTATCAC
Found at i:79038711 original size:18 final size:18
Alignment explanation
Indices: 79038688--79038731 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
79038678 CCATTAGGCC
79038688 TTATCACATATATATACA
1 TTATCACATATATATACA
79038706 TTATCACATATATATACA
1 TTATCACATATATATACA
79038724 TT-TCACAT
1 TTATCACAT
79038732 TCATCACATC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 6 0.23
18 20 0.77
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (18 bp):
TTATCACATATATATACA
Found at i:79038741 original size:66 final size:67
Alignment explanation
Indices: 79038639--79038780 Score: 268
Period size: 66 Copynumber: 2.1 Consensus size: 67
79038629 CCATTAGGCC
79038639 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
79038704 CA
66 CA
79038706 TTATCACATATATATACA-TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
79038770 CA
66 CA
*
79038772 TTTTCACAT
1 TTATCACAT
79038781 TCATCACGGC
Statistics
Matches: 74, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
66 56 0.76
67 18 0.24
ACGTcount: A:0.34, C:0.25, G:0.06, T:0.36
Consensus pattern (67 bp):
TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
CA
Found at i:79038747 original size:115 final size:114
Alignment explanation
Indices: 79038589--79038826 Score: 419
Period size: 115 Copynumber: 2.1 Consensus size: 114
79038579 GCCATTAGGC
79038589 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
79038654 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
66 ACACTTTCACATTCAT--CA-CGGCCATTAGGCCTTATCACATATATATACA
79038706 -TTATCACATATATATACA-TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
79038769 ACATTTTCACATTCATCACGGCCATTAGGCCTTATCACATATATATACA
66 ACACTTTCACATTCATCACGGCCATTAGGCCTTATCACATATATATACA
79038818 CTT-TCACAT
1 CTTATCACAT
79038827 TCATCACGTC
Statistics
Matches: 119, Mismatches: 1, Indels: 7
0.94 0.01 0.06
Matches are distributed among these distances:
112 37 0.31
113 4 0.03
115 60 0.50
116 18 0.15
ACGTcount: A:0.32, C:0.26, G:0.07, T:0.34
Consensus pattern (114 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
ACACTTTCACATTCATCACGGCCATTAGGCCTTATCACATATATATACA
Found at i:79044271 original size:93 final size:93
Alignment explanation
Indices: 79044159--79044330 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
79044149 CGCCCATAAG
* *
79044159 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
79044224 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
79044252 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
79044317 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
79044331 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:79044327 original size:46 final size:46
Alignment explanation
Indices: 79044152--79044327 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
79044142 TGTAACCCGC
* * *
79044152 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
79044198 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
79044248 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
79044291 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
79044328 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:79046401 original size:37 final size:36
Alignment explanation
Indices: 79046351--79046437 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
79046341 TACGAAGTCT
79046351 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
79046387 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
79046424 TCACCCGGAACATA
1 T-ACCCGG-ACATA
79046438 TTTCTAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:79046573 original size:49 final size:49
Alignment explanation
Indices: 79046506--79047097 Score: 1031
Period size: 49 Copynumber: 12.1 Consensus size: 49
79046496 TTTACCACAT
* *
79046506 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
79046555 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* * *
79046604 ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79046653 ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* * * *
79046702 ATATATATACAGTTTCACATTCATCACATCAGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79046751 ATATCTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
79046800 ATATCTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAT
1 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
79046849 ATATGTATACAGTTTCACATTCCTCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
79046898 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
79046947 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
79046996 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
79047045 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
79047094 ATAT
1 ATAT
79047098 ATTATTATGT
Statistics
Matches: 524, Mismatches: 19, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 524 1.00
ACGTcount: A:0.28, C:0.27, G:0.11, T:0.34
Consensus pattern (49 bp):
ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:79054096 original size:24 final size:23
Alignment explanation
Indices: 79054060--79054105 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
79054050 CATATTACCT
*
79054060 TGCTTCAGCTCAAGAAATTCTTTA
1 TGCTTCAGATCAAGAAA-TCTTTA
* *
79054084 TGCTTCTGATCAATAAATCTTT
1 TGCTTCAGATCAAGAAATCTTT
79054106 CACTAATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.28, C:0.20, G:0.11, T:0.41
Consensus pattern (23 bp):
TGCTTCAGATCAAGAAATCTTTA
Found at i:79056183 original size:93 final size:93
Alignment explanation
Indices: 79056071--79056242 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
79056061 CGCCCATAAG
* *
79056071 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
79056136 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
79056164 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
79056229 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
79056243 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:79056239 original size:46 final size:46
Alignment explanation
Indices: 79056064--79056239 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
79056054 TGTAACCCGC
* * *
79056064 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
79056110 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
79056160 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
79056203 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
79056240 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:79071113 original size:9 final size:9
Alignment explanation
Indices: 79071101--79071157 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
79071091 TTTGATAAAC
79071101 ATGATATGT
1 ATGATATGT
*
79071110 ATGATATGCAC
1 ATGATATG--T
*
79071121 ATGACATGT
1 ATGATATGT
*
79071130 ATGATATGCAC
1 ATGATATG--T
79071141 ATGATATGT
1 ATGATATGT
79071150 ATGATATG
1 ATGATATG
79071158 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:79071124 original size:20 final size:20
Alignment explanation
Indices: 79071099--79071169 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
79071089 ATTTTGATAA
79071099 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
79071119 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
79071139 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
79071159 ACATGAGATGT
1 ACATGATATGT
79071170 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:79071146 original size:11 final size:11
Alignment explanation
Indices: 79071110--79071164 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
79071100 CATGATATGT
79071110 ATGATATGCAC
1 ATGATATGCAC
* *
79071121 ATGACATG--T
1 ATGATATGCAC
79071130 ATGATATGCAC
1 ATGATATGCAC
*
79071141 ATGATATG--T
1 ATGATATGCAC
79071150 ATGATATGCAC
1 ATGATATGCAC
79071161 ATGA
1 ATGA
79071165 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:79071246 original size:23 final size:23
Alignment explanation
Indices: 79071216--79071382 Score: 262
Period size: 23 Copynumber: 7.1 Consensus size: 23
79071206 AGGAAGTGCA
79071216 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
79071239 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
79071263 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
79071287 AAATGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
79071310 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
79071333 AAAGGGCTCATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
79071356 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
79071380 AAA
1 AAA
79071383 AGAGGCTAGG
Statistics
Matches: 135, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
23 69 0.51
24 66 0.49
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:79071271 original size:24 final size:23
Alignment explanation
Indices: 79071215--79071389 Score: 251
Period size: 24 Copynumber: 7.4 Consensus size: 23
79071205 GAGGAAGTGC
79071215 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
79071238 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
79071261 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
79071285 CAAAATGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
79071309 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
79071332 TAAAGGGCTCATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
79071356 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
79071380 AAAAGAGGCT
1 AAAAG-GGCT
79071390 AGGCCTCTAG
Statistics
Matches: 140, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
23 64 0.46
24 72 0.51
25 4 0.03
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:79071283 original size:47 final size:47
Alignment explanation
Indices: 79071214--79071382 Score: 268
Period size: 47 Copynumber: 3.6 Consensus size: 47
79071204 GGAGGAAGTG
79071214 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
79071261 CAAAAGGGCTTATGCCCCAGTTATCAAAATGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
* *
79071309 -TAAAGGGCTTATGCCCCAGTTATTAAAGGGCTCATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
79071355 TAAAAGGGCTTTTGCCCCAGTTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAA
79071383 AGAGGCTAGG
Statistics
Matches: 112, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
46 20 0.18
47 71 0.63
48 21 0.19
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:79077578 original size:19 final size:19
Alignment explanation
Indices: 79077539--79077580 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
79077529 GGACATGAAT
* *
79077539 GTGTTGAAGACACATGGGC
1 GTGTTGAAGACACACGAGC
*
79077558 GTGTTGAAGACATACGAGC
1 GTGTTGAAGACACACGAGC
79077577 GTGT
1 GTGT
79077581 CCCTGTGTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.14, G:0.36, T:0.24
Consensus pattern (19 bp):
GTGTTGAAGACACACGAGC
Found at i:79084072 original size:49 final size:49
Alignment explanation
Indices: 79084000--79084245 Score: 330
Period size: 49 Copynumber: 5.0 Consensus size: 49
79083990 GTAGACAAGG
* * *
79084000 TTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAA
1 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAA
*
79084049 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCCAA
1 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA
** * * * * *
79084099 CCATCTGATACACGTAATAGCCTGCACTTAGTACTACACACGTGATCGAA
1 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA
* * * *
79084149 GTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 -TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAA
79084199 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC
1 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC
79084246 TCACAATAGA
Statistics
Matches: 170, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
49 84 0.49
50 50 0.29
51 36 0.21
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAA
Found at i:79084181 original size:101 final size:98
Alignment explanation
Indices: 79084017--79084245 Score: 323
Period size: 100 Copynumber: 2.3 Consensus size: 98
79084007 GTACGCATAG
* *
79084017 TAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACGTAGTAGCCTGCACTTAGTA
1 TAGCCTGCACTTAGTACTACACATGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTAGTA
* *
79084082 CTACACACGTGACCCAACCATCTGATACACGTAA
66 CTACACACGCGA-CCAACCATCCGATACACGTAA
* * *
79084116 TAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACTTAG
1 TAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACTTAG
* ** * *
79084181 TACTACACATGCGACCAATTATCCGGTACACGTAG
64 TACTACACACGCGACCAACCATCCGATACACGTAA
79084216 TAGCCTGCACTTAGTACTACACATGTGACC
1 TAGCCTGCACTTAGTACTACACATGTGACC
79084246 TCACAATAGA
Statistics
Matches: 114, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
99 28 0.25
100 46 0.40
101 40 0.35
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (98 bp):
TAGCCTGCACTTAGTACTACACATGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTAGTA
CTACACACGCGACCAACCATCCGATACACGTAA
Found at i:79084442 original size:26 final size:26
Alignment explanation
Indices: 79084413--79084466 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
79084403 TATAATAAAA
79084413 TAAAAAGAATCGATAAATTATTTATG
1 TAAAAAGAATCGATAAATTATTTATG
79084439 TAAAAAGAATCGATAAATTATTTATG
1 TAAAAAGAATCGATAAATTATTTATG
79084465 TA
1 TA
79084467 CAAACTTGTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.50, C:0.04, G:0.11, T:0.35
Consensus pattern (26 bp):
TAAAAAGAATCGATAAATTATTTATG
Found at i:79084548 original size:27 final size:27
Alignment explanation
Indices: 79084518--79084571 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
79084508 TCATACAACC
* *
79084518 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
79084545 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
79084572 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:79088785 original size:7 final size:7
Alignment explanation
Indices: 79088773--79088822 Score: 66
Period size: 7 Copynumber: 7.1 Consensus size: 7
79088763 ACAGAAAACG
79088773 AAACCCT
1 AAACCCT
79088780 AAACCCT
1 AAACCCT
*
79088787 AAACCTT
1 AAACCCT
79088794 AAACCCT
1 AAACCCT
*
79088801 AAACCCAA
1 AAACCC-T
79088809 AAACCCT
1 AAACCCT
79088816 -AACCCT
1 AAACCCT
79088822 A
1 A
79088823 GTCGCTGCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
6 6 0.16
7 25 0.68
8 6 0.16
ACGTcount: A:0.46, C:0.40, G:0.00, T:0.14
Consensus pattern (7 bp):
AAACCCT
Found at i:79096974 original size:40 final size:40
Alignment explanation
Indices: 79096925--79097067 Score: 214
Period size: 40 Copynumber: 3.6 Consensus size: 40
79096915 ATTCGCACGA
* * *** * *
79096925 CCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATG
*
79096965 CCTTTGGGTCTTAGCCCGGATATAACAACTCGCACGAATG
1 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATG
79097005 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATG
1 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATG
79097045 CCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGTCTTAGCCCGGATAT
79097068 CATTCCAATG
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 94 1.00
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATG
Found at i:79100216 original size:14 final size:15
Alignment explanation
Indices: 79100188--79100217 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
79100178 CAAAAATTTA
79100188 GAGGCTTTCTAAGTT
1 GAGGCTTTCTAAGTT
79100203 GAGGCTTT-TAAGTT
1 GAGGCTTTCTAAGTT
79100217 G
1 G
79100218 CAAATAGCCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.20, C:0.10, G:0.30, T:0.40
Consensus pattern (15 bp):
GAGGCTTTCTAAGTT
Found at i:79101491 original size:13 final size:13
Alignment explanation
Indices: 79101469--79101500 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
79101459 GAGTTAACTT
*
79101469 GATAATTACTTAA
1 GATAAGTACTTAA
79101482 GATAAGTACTTAA
1 GATAAGTACTTAA
79101495 GATAAG
1 GATAAG
79101501 GTAAGAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.47, C:0.06, G:0.16, T:0.31
Consensus pattern (13 bp):
GATAAGTACTTAA
Found at i:79101962 original size:29 final size:29
Alignment explanation
Indices: 79101929--79101986 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
79101919 CTTACTAAGC
79101929 TTTGATAGCTTACTTTGTGTGCTATGTTT
1 TTTGATAGCTTACTTTGTGTGCTATGTTT
79101958 TTTGATAGCTTACTTTGTGTGCTATGTTT
1 TTTGATAGCTTACTTTGTGTGCTATGTTT
79101987 ACTCTGTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.14, C:0.10, G:0.21, T:0.55
Consensus pattern (29 bp):
TTTGATAGCTTACTTTGTGTGCTATGTTT
Found at i:79104109 original size:17 final size:17
Alignment explanation
Indices: 79104087--79104120 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
79104077 ATTAAGTTAA
79104087 TAAAAATATAACAAAAC
1 TAAAAATATAACAAAAC
79104104 TAAAAATATAACAAAAC
1 TAAAAATATAACAAAAC
79104121 ATGATTTCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.71, C:0.12, G:0.00, T:0.18
Consensus pattern (17 bp):
TAAAAATATAACAAAAC
Found at i:79106920 original size:27 final size:26
Alignment explanation
Indices: 79106872--79106931 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 26
79106862 GCGAAGCTAC
*
79106872 CAGATATTGTGACGTAGTCACCAGATA
1 CAGATATTGTGACGTAGCCACCAGA-A
*
79106899 CAGATATTGTGGC-TAGGCCACCAGAA
1 CAGATATTGTGACGTA-GCCACCAGAA
79106925 CAGATAT
1 CAGATAT
79106932 ATATATGTGG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
26 10 0.33
27 20 0.67
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGTAGCCACCAGAA
Found at i:79107721 original size:27 final size:27
Alignment explanation
Indices: 79107688--79107814 Score: 173
Period size: 27 Copynumber: 4.7 Consensus size: 27
79107678 TAACCCAAAA
*
79107688 GGTATCTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
79107715 GGTATCTCAGTAATTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
79107742 GGTATTTCAGTAATTCTATCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
79107769 GGTATTTCGGTAATTCTACCTTACAGA
1 GGTATTTCGGTAATTCTACCCTACAGG
*
79107796 GGTATTTCGGTAATCCTAC
1 GGTATTTCGGTAATTCTAC
79107815 AACTTATCCA
Statistics
Matches: 90, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 90 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:79116231 original size:21 final size:21
Alignment explanation
Indices: 79116177--79116216 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
79116167 AATTACAGTG
79116177 AAGCTACCAGATATTGTGACA
1 AAGCTACCAGATATTGTGACA
*
79116198 AAGCTACTAGATATTGTGA
1 AAGCTACCAGATATTGTGA
79116217 TGAAGTCACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.28
Consensus pattern (21 bp):
AAGCTACCAGATATTGTGACA
Found at i:79116277 original size:33 final size:32
Alignment explanation
Indices: 79116226--79116289 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
79116216 ATGAAGTCAC
* *
79116226 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
* *
79116258 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAGA
79116290 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:79117027 original size:27 final size:27
Alignment explanation
Indices: 79116972--79117028 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
79116962 TACGCACGAG
* *
79116972 GGGCAAAATAGTCATTTAACACCCTAA
1 GGGCAAAATAGTAATTTAACACCCCAA
*
79116999 GGGCAAAATAGTAATTTTAC-CCCACAA
1 GGGCAAAATAGTAATTTAACACCC-CAA
79117026 GGG
1 GGG
79117029 TATCTCGATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 3 0.12
27 23 0.88
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (27 bp):
GGGCAAAATAGTAATTTAACACCCCAA
Found at i:79117114 original size:27 final size:27
Alignment explanation
Indices: 79117008--79117153 Score: 168
Period size: 27 Copynumber: 5.4 Consensus size: 27
79116998 AGGGCAAAAT
* * * *
79117008 AGTAATTTTACCCCACAAGGGTATCTC
1 AGTAATTCTACCCTACAGGGGTATTTC
*
79117035 -GATAATTCTACCCTACAGGGGTATTAC
1 AG-TAATTCTACCCTACAGGGGTATTTC
* * *
79117062 GGTATTTCTACCCTACAAGGGTATTTC
1 AGTAATTCTACCCTACAGGGGTATTTC
*
79117089 AGTAATTCTATCCTACAGGGGTATTTC
1 AGTAATTCTACCCTACAGGGGTATTTC
* *
79117116 AGTAAATCTACCTTACAGGGGTATTTC
1 AGTAATTCTACCCTACAGGGGTATTTC
*
79117143 GGTAATTCTAC
1 AGTAATTCTAC
79117154 AACTTATCCA
Statistics
Matches: 100, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 98 0.98
28 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (27 bp):
AGTAATTCTACCCTACAGGGGTATTTC
Found at i:79132043 original size:29 final size:28
Alignment explanation
Indices: 79131989--79132077 Score: 142
Period size: 28 Copynumber: 3.1 Consensus size: 28
79131979 ATTGCATGAC
79131989 TATGAATGTGATTGGGCCTAATGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
* *
79132017 TATGAATGTGATTTGGGCCCAAAGGGCCA
1 TATGAATGTGA-TTGGGCCTAATGGGCCA
*
79132046 TATGAATGTGATTGGGCCTAGTGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
79132074 TATG
1 TATG
79132078 CATATATGTA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
28 29 0.53
29 26 0.47
ACGTcount: A:0.25, C:0.15, G:0.33, T:0.28
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTAATGGGCCA
Found at i:79133347 original size:31 final size:31
Alignment explanation
Indices: 79133303--79133366 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
79133293 CCTTTTCATA
79133303 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
**
79133334 TTTCAT-ATCTCATATTACTGGGCCGAAGCCT
1 TTTCATAAT-TCATAACACTGGGCCGAAGCCT
79133365 TT
1 TT
79133367 ACTGTAACCG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 2 0.07
31 28 0.93
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:79133651 original size:24 final size:24
Alignment explanation
Indices: 79133559--79133700 Score: 236
Period size: 24 Copynumber: 6.0 Consensus size: 24
79133549 GCTTTATCAT
*
79133559 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
79133584 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
79133607 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
79133630 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
79133654 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
79133678 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
79133701 TGCACTTCCT
Statistics
Matches: 114, Mismatches: 1, Indels: 5
0.95 0.01 0.04
Matches are distributed among these distances:
23 41 0.36
24 65 0.57
25 8 0.07
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:79133778 original size:20 final size:20
Alignment explanation
Indices: 79133755--79133837 Score: 148
Period size: 20 Copynumber: 4.2 Consensus size: 20
79133745 GAACATCTCG
*
79133755 TGTGCATATTATACATATCA
1 TGTGCATATCATACATATCA
*
79133775 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
79133795 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
79133815 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
79133835 TGT
1 TGT
79133838 TTATCAAAAT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 60 1.00
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:79133784 original size:11 final size:11
Alignment explanation
Indices: 79133768--79133826 Score: 63
Period size: 11 Copynumber: 5.7 Consensus size: 11
79133758 GCATATTATA
79133768 CATATCATGTG
1 CATATCATGTG
*
79133779 CATATCA--TA
1 CATATCATGTG
*
79133788 CATGTCATGTG
1 CATATCATGTG
*
79133799 CATATCA--TA
1 CATATCATGTG
79133808 CATATCATGTG
1 CATATCATGTG
79133819 CATATCAT
1 CATATCAT
79133827 ACATATCATG
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 15 0.39
11 23 0.61
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
CATATCATGTG
Found at i:79133811 original size:9 final size:9
Alignment explanation
Indices: 79133759--79133835 Score: 55
Period size: 9 Copynumber: 7.9 Consensus size: 9
79133749 ATCTCGTGTG
*
79133759 CATATTATA
1 CATATCATA
*
79133768 CATATCATGTG
1 CATATCA--TA
79133779 CATATCATA
1 CATATCATA
* *
79133788 CATGTCATGTG
1 CATATCA--TA
79133799 CATATCATA
1 CATATCATA
*
79133808 CATATCATGTG
1 CATATCA--TA
79133819 CATATCATA
1 CATATCATA
79133828 CATATCAT
1 CATATCAT
79133836 GTTTATCAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
9 30 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.36
Consensus pattern (9 bp):
CATATCATA
Found at i:79136020 original size:58 final size:58
Alignment explanation
Indices: 79135924--79136058 Score: 155
Period size: 58 Copynumber: 2.3 Consensus size: 58
79135914 TATGGTGACG
* * * * *
79135924 AGAT-TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCGAGCTCGAA
* * **
79135981 ATATATGGCACTAAGTGTGCATGCTGGAAAAATGCGGCACTGGGTGTGCGAGCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCGAGCTCGAA
* * *
79136039 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
79136059 GGGCTTAAAT
Statistics
Matches: 64, Mismatches: 13, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
57 3 0.05
58 61 0.95
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCGAGCTCGAA
Found at i:79136029 original size:29 final size:29
Alignment explanation
Indices: 79135928--79136010 Score: 157
Period size: 29 Copynumber: 2.9 Consensus size: 29
79135918 GTGACGAGAT
79135928 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
79135957 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
79135986 TGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCGTGCTGGAAA
79136011 AATGCGGCAC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:79143786 original size:29 final size:29
Alignment explanation
Indices: 79143753--79143854 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
79143743 TGACGAGATC
79143753 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
79143782 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
79143811 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
79143840 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
79143855 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:79145320 original size:27 final size:27
Alignment explanation
Indices: 79145290--79145349 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
79145280 AGTTAGGGNA
* *
79145290 AGGGTAAAACGGTACTTCTATAAATCG
1 AGGGTAAAACGGTAATTATATAAATCG
*
79145317 AGGGTAAAACGGTAATTATGTAAATCG
1 AGGGTAAAACGGTAATTATATAAATCG
*
79145344 GGGGTA
1 AGGGTA
79145350 CTTCAATAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.37, C:0.10, G:0.28, T:0.25
Consensus pattern (27 bp):
AGGGTAAAACGGTAATTATATAAATCG
Found at i:79149873 original size:16 final size:16
Alignment explanation
Indices: 79149852--79149882 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
79149842 GGCAAATCCC
79149852 AAAATGCTGAAAAGCT
1 AAAATGCTGAAAAGCT
79149868 AAAATGCTGAAAAGC
1 AAAATGCTGAAAAGC
79149883 AGAAAGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.13, G:0.19, T:0.16
Consensus pattern (16 bp):
AAAATGCTGAAAAGCT
Found at i:79150140 original size:28 final size:28
Alignment explanation
Indices: 79150100--79150188 Score: 106
Period size: 28 Copynumber: 3.1 Consensus size: 28
79150090 ATTGCATGAC
*
79150100 TATGAATGTGATTGGGCCTAATGGGCCA
1 TATGAATGAGATTGGGCCTAATGGGCCA
* *
79150128 TATGAATGGGATTTGGGCCTAAAGGGCCA
1 TATGAATGAGA-TTGGGCCTAATGGGCCA
** * *
79150157 TATGAAAAAGATTGGGCCTAGTGGGCTA
1 TATGAATGAGATTGGGCCTAATGGGCCA
79150185 TATG
1 TATG
79150189 CATGTATGTA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 28 0.54
29 24 0.46
ACGTcount: A:0.28, C:0.12, G:0.33, T:0.27
Consensus pattern (28 bp):
TATGAATGAGATTGGGCCTAATGGGCCA
Found at i:79150154 original size:29 final size:28
Alignment explanation
Indices: 79150100--79150176 Score: 100
Period size: 29 Copynumber: 2.7 Consensus size: 28
79150090 ATTGCATGAC
* *
79150100 TATGAATGTGATTGGGCCTAATGGGCCA
1 TATGAATGGGATTGGGCCTAAAGGGCCA
79150128 TATGAATGGGATTTGGGCCTAAAGGGCCA
1 TATGAATGGGA-TTGGGCCTAAAGGGCCA
***
79150157 TATGAAAAAGATTGGGCCTA
1 TATGAATGGGATTGGGCCTA
79150177 GTGGGCTATA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
28 19 0.44
29 24 0.56
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (28 bp):
TATGAATGGGATTGGGCCTAAAGGGCCA
Found at i:79164150 original size:11 final size:11
Alignment explanation
Indices: 79164134--79164165 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
79164124 GTGCAGTAAC
79164134 AGTAACAGTAT
1 AGTAACAGTAT
79164145 AGTAACAGTAT
1 AGTAACAGTAT
79164156 AGTAACAGTA
1 AGTAACAGTA
79164166 AACAATGTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (11 bp):
AGTAACAGTAT
Found at i:79164176 original size:18 final size:18
Alignment explanation
Indices: 79164155--79164189 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
79164145 AGTAACAGTA
79164155 TAGTAACAGTAAACAATG
1 TAGTAACAGTAAACAATG
*
79164173 TAGTAATAGTAAACAAT
1 TAGTAACAGTAAACAAT
79164190 ATGCAAGTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.51, C:0.09, G:0.14, T:0.26
Consensus pattern (18 bp):
TAGTAACAGTAAACAATG
Found at i:79164184 original size:6 final size:6
Alignment explanation
Indices: 79164109--79164166 Score: 50
Period size: 6 Copynumber: 10.0 Consensus size: 6
79164099 TGGCCCATTG
* * *
79164109 CAGTAA CAGTAAA TAGT-G CAGTAA CAGTAA CAGT-A TAGTAA CAGT-A
1 CAGTAA CAGT-AA CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA
*
79164155 TAGTAA CAGTAA
1 CAGTAA CAGTAA
79164167 ACAATGTAGT
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
5 11 0.28
6 24 0.60
7 5 0.12
ACGTcount: A:0.47, C:0.12, G:0.19, T:0.22
Consensus pattern (6 bp):
CAGTAA
Found at i:79164548 original size:26 final size:27
Alignment explanation
Indices: 79164502--79164607 Score: 142
Period size: 27 Copynumber: 4.0 Consensus size: 27
79164492 ACATACATCA
* * *
79164502 CATAGGGGTAAAACAGTCATTTTACCT
1 CATAAGGGAAAAACAATCATTTTACCT
* *
79164529 CATAAGGG-TAAACAGTCATTTTACCT
1 CATAAGGGAAAAACAATCATTTTACCT
* *
79164555 CATAAGGGAAAAATAATTATTTTACCT
1 CATAAGGGAAAAACAATCATTTTACCT
79164582 CATAAGGGAAAAACAATCATTTTACC
1 CATAAGGGAAAAACAATCATTTTACC
79164608 CCACAAACAT
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
26 25 0.36
27 45 0.64
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (27 bp):
CATAAGGGAAAAACAATCATTTTACCT
Found at i:79164656 original size:27 final size:27
Alignment explanation
Indices: 79164615--79164700 Score: 127
Period size: 27 Copynumber: 3.2 Consensus size: 27
79164605 ACCCCACAAA
** *
79164615 CATTTTACCTTATAAGGGCAAAACAGT
1 CATTTTACCCCATAAGGGCAAAATAGT
* *
79164642 CATTTTACTCCATAAGGGCAAAATAGC
1 CATTTTACCCCATAAGGGCAAAATAGT
79164669 CATTTTACCCCATAAGGGCAAAATAGT
1 CATTTTACCCCATAAGGGCAAAATAGT
79164696 CATTT
1 CATTT
79164701 ACCAATTTTG
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (27 bp):
CATTTTACCCCATAAGGGCAAAATAGT
Found at i:79164658 original size:70 final size:70
Alignment explanation
Indices: 79164545--79164680 Score: 175
Period size: 70 Copynumber: 1.9 Consensus size: 70
79164535 GGTAAACAGT
* * *
79164545 CATTTTACCTCATAAGGGAAAAATAATTATTTTACCTCATAAGGGAAAAACAATCATTTTACCCC
1 CATTTTACCTCATAAGGGAAAAACAATCATTTTACCTCATAAGGGAAAAACAACCATTTTACCCC
79164610 ACAAA
66 ACAAA
* * * * * *
79164615 CATTTTACCTTATAAGGGCAAAACAGTCATTTTA-CTCCATAAGGGCAAAATAGCCATTTTACCC
1 CATTTTACCTCATAAGGGAAAAACAATCATTTTACCT-CATAAGGGAAAAACAACCATTTTACCC
79164679 CA
65 CA
79164681 TAAGGGCAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
69 2 0.04
70 54 0.96
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (70 bp):
CATTTTACCTCATAAGGGAAAAACAATCATTTTACCTCATAAGGGAAAAACAACCATTTTACCCC
ACAAA
Found at i:79164684 original size:97 final size:96
Alignment explanation
Indices: 79164519--79164700 Score: 249
Period size: 97 Copynumber: 1.9 Consensus size: 96
79164509 GTAAAACAGT
* ** *
79164519 CATTTTACCTCATAAGGGTAAACAGTCATTTTACCTCATAAGGGAAAAATAATTATTTTACCTCA
1 CATTTTACCTCATAAGGGAAAACAGTCATTTTACCTCATAAGGGAAAAATAACCATTTTACCCCA
79164584 TAAGGGAAAAACAATCATTTTACCCCACAAA
66 TAAGGGAAAAACAATCATTTTACCCCACAAA
* * *
79164615 CATTTTACCTTATAAGGGCAAAACAGTCATTTTA-CTCCATAAGGGCAAAATAGCCATTTTACCC
1 CATTTTACCTCATAAGGG-AAAACAGTCATTTTACCT-CATAAGGGAAAAATAACCATTTTACCC
* * *
79164679 CATAAGGGCAAAATAGTCATTT
64 CATAAGGGAAAAACAATCATTT
79164701 ACCAATTTTG
Statistics
Matches: 74, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
96 19 0.26
97 55 0.74
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.29
Consensus pattern (96 bp):
CATTTTACCTCATAAGGGAAAACAGTCATTTTACCTCATAAGGGAAAAATAACCATTTTACCCCA
TAAGGGAAAAACAATCATTTTACCCCACAAA
Found at i:79169289 original size:24 final size:25
Alignment explanation
Indices: 79169262--79169316 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 25
79169252 GTATAAGTGT
*
79169262 AATTATTAAATA-TTTTTAAGGTTA
1 AATTAGTAAATAGTTTTTAAGGTTA
*
79169286 AATTAGTAAATAGGTTTTTAATGTTA
1 AATTAGTAAATA-GTTTTTAAGGTTA
79169312 AATTA
1 AATTA
79169317 AATAAAAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 11 0.41
26 16 0.59
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (25 bp):
AATTAGTAAATAGTTTTTAAGGTTA
Found at i:79170988 original size:24 final size:24
Alignment explanation
Indices: 79170956--79171014 Score: 109
Period size: 24 Copynumber: 2.5 Consensus size: 24
79170946 AACAAAGAGT
79170956 CCTACACACCAACTCCGTACCAAC
1 CCTACACACCAACTCCGTACCAAC
*
79170980 CCTACACACCAACTCTGTACCAAC
1 CCTACACACCAACTCCGTACCAAC
79171004 CCTACACACCA
1 CCTACACACCA
79171015 TGTGGGGATA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.34, C:0.49, G:0.03, T:0.14
Consensus pattern (24 bp):
CCTACACACCAACTCCGTACCAAC
Found at i:79172465 original size:46 final size:46
Alignment explanation
Indices: 79172398--79172653 Score: 209
Period size: 46 Copynumber: 5.5 Consensus size: 46
79172388 TGTAACCCGC
* * *
79172398 CCATAAGTGAACTCGGGCTCAACTCAATGAGCTCGGGCATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTACAT
* * *
79172444 CCATAAGTGAACTAGGACTCAACTCAACAAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTTACAT
* * * * * **
79172494 -C-TCA-TGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTACAT
*
79172537 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTTACAT
* * * * * *
79172587 -C-TAA-TGAACTCGGACTCAACTCAATGAGTTTGGACGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTACAT
*
79172630 CCATAAGTGAACTCAGACTCAACT
1 CCATAAGTGAACTCGGACTCAACT
79172654 TAACAAGTTC
Statistics
Matches: 164, Mismatches: 32, Indels: 28
0.73 0.14 0.12
Matches are distributed among these distances:
43 9 0.05
44 4 0.02
45 5 0.03
46 75 0.46
47 51 0.31
48 6 0.04
49 4 0.02
50 10 0.06
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTACAT
Found at i:79172512 original size:93 final size:93
Alignment explanation
Indices: 79172405--79172670 Score: 390
Period size: 93 Copynumber: 2.9 Consensus size: 93
79172395 CGCCCATAAG
* * * * *
79172405 TGAACTCGGGCTCAACTCAATGAGCTCGGGCATTTGCATCCATAAGTGAACTAGGACTCAACTCA
1 TGAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCATAAGTGAACTAGGACTCAACTCA
*
79172470 ACAAGCTCGGATGCCTAGTTACATCTCA
66 ACAAGCTCGGATGCCTAGTTACATCTAA
* * *
79172498 TGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCATAAGTGAACTAGGACTCAACTCA
*
79172563 ACGAGCTCGGATGCCTAGTTACATCTAA
66 ACAAGCTCGGATGCCTAGTTACATCTAA
* * *
79172591 TGAACTCGGACTCAACTCAATGAGTTTGGACGTTCACATCCATAAGTGAACTCA-GACTCAACTT
1 TGAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCATAAGTGAACT-AGGACTCAACTC
*
79172655 AACAAGTTCGGATGCC
65 AACAAGCTCGGATGCC
79172671 CAAAAATCCG
Statistics
Matches: 154, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
93 154 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.24
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCATAAGTGAACTAGGACTCAACTCA
ACAAGCTCGGATGCCTAGTTACATCTAA
Found at i:79175117 original size:30 final size:30
Alignment explanation
Indices: 79175082--79175141 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
79175072 CAAGAAAATC
*
79175082 GAATAAAGAAATCCA-AGATAGAGAAACCCA
1 GAATAAAGAAATCCAGA-ATAAAGAAACCCA
79175112 GAATAAAGAAATCCAGAATAAAGAAACCCA
1 GAATAAAGAAATCCAGAATAAAGAAACCCA
79175142 AGATATGATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.58, C:0.17, G:0.15, T:0.10
Consensus pattern (30 bp):
GAATAAAGAAATCCAGAATAAAGAAACCCA
Found at i:79175121 original size:15 final size:15
Alignment explanation
Indices: 79175082--79175141 Score: 77
Period size: 15 Copynumber: 4.0 Consensus size: 15
79175072 CAAGAAAATC
*
79175082 GAATAAAGAAATCCA
1 GAATAAAGAAACCCA
*
79175097 -AGATAGAGAAACCCA
1 GA-ATAAAGAAACCCA
*
79175112 GAATAAAGAAATCCA
1 GAATAAAGAAACCCA
79175127 GAATAAAGAAACCCA
1 GAATAAAGAAACCCA
79175142 AGATATGATA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
14 1 0.03
15 36 0.95
16 1 0.03
ACGTcount: A:0.58, C:0.17, G:0.15, T:0.10
Consensus pattern (15 bp):
GAATAAAGAAACCCA
Found at i:79178160 original size:47 final size:47
Alignment explanation
Indices: 79178104--79178276 Score: 201
Period size: 47 Copynumber: 3.7 Consensus size: 47
79178094 ATCCATAAGT
79178104 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
* * * ** * *
79178151 GAACTCGGACTCAACTCGACGAGTTCAGATG--T--TCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT-C-TCA-C
79178197 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
* * *
79178244 GAACTTGGACTCAACTCAACGAGTTTGGATGCC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCC
79178277 CAAATATCTG
Statistics
Matches: 102, Mismatches: 17, Indels: 14
0.77 0.13 0.11
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
45 3 0.03
46 28 0.27
47 58 0.57
48 3 0.03
49 1 0.01
50 4 0.04
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.23
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:79178185 original size:93 final size:93
Alignment explanation
Indices: 79178057--79178268 Score: 345
Period size: 93 Copynumber: 2.3 Consensus size: 93
79178047 TGCCCATAAG
* * * **
79178057 CGAACTCGGACTTAACTCAACAAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAG-TTCAGATGTTCGCATCCATAAGTGAACTCGGACTCAACTC
79178121 AACGAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
*
79178150 CGAACTCGGACTCAACTCGACGAGTTCAGATGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCAGATGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
79178215 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
79178243 CGAACTTGGACTCAACTCAACGAGTT
1 CGAACTCGGACTCAACTCAACGAGTT
79178269 TGGATGCCCA
Statistics
Matches: 110, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
92 2 0.02
93 108 0.98
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCAGATGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:79178219 original size:46 final size:46
Alignment explanation
Indices: 79178050--79178227 Score: 166
Period size: 46 Copynumber: 3.8 Consensus size: 46
79178040 TGTAACCTGC
* * **
79178050 CCATAAGCGAACTCGGACTTAACTCAACAAGCTT-GGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAG-TTCGGATGTTCGCAT
* * **
79178096 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG--T--TCGCAT
* * *
79178146 -C-TCA-CGAACTCGGACTCAACTCGACGAGTTCAGATGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
* *
79178189 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG
79178228 CCTAGTTACA
Statistics
Matches: 104, Mismatches: 20, Indels: 16
0.74 0.14 0.11
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
45 4 0.04
46 59 0.57
47 28 0.27
48 3 0.03
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
Found at i:79179981 original size:20 final size:20
Alignment explanation
Indices: 79179956--79180001 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
79179946 GGGCCTACAC
*
79179956 GGCCCAATTCAGCCCAGTGT
1 GGCCCAATTCAGCCCAATGT
* *
79179976 GGCCCAGTTCGGCCCAATGT
1 GGCCCAATTCAGCCCAATGT
79179996 GGCCCA
1 GGCCCA
79180002 TGAGAAAGCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.17, C:0.37, G:0.28, T:0.17
Consensus pattern (20 bp):
GGCCCAATTCAGCCCAATGT
Found at i:79180129 original size:8 final size:8
Alignment explanation
Indices: 79180104--79180137 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
79180094 AACCCACTTC
79180104 TCGGCTTT
1 TCGGCTTT
* *
79180112 TCAGCCTT
1 TCGGCTTT
79180120 TCGGCTTT
1 TCGGCTTT
79180128 TCGGCTTT
1 TCGGCTTT
79180136 TC
1 TC
79180138 AGCCTTTGTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.29, G:0.21, T:0.47
Consensus pattern (8 bp):
TCGGCTTT
Found at i:79180708 original size:16 final size:16
Alignment explanation
Indices: 79180687--79180719 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
79180677 CCACTTCCAG
79180687 AAGTATTCGGCCAAGA
1 AAGTATTCGGCCAAGA
79180703 AAGTATTCGGCCAAGA
1 AAGTATTCGGCCAAGA
79180719 A
1 A
79180720 CAGAAAGGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.18
Consensus pattern (16 bp):
AAGTATTCGGCCAAGA
Found at i:79188817 original size:12 final size:12
Alignment explanation
Indices: 79188802--79188835 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
79188792 CACTCCCCCT
79188802 ATCTCTCCACAA
1 ATCTCTCCACAA
*
79188814 ATCTTTCCACAA
1 ATCTCTCCACAA
*
79188826 CTCTCTCCAC
1 ATCTCTCCAC
79188836 TTTTCTCTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.44, G:0.00, T:0.29
Consensus pattern (12 bp):
ATCTCTCCACAA
Found at i:79189589 original size:43 final size:41
Alignment explanation
Indices: 79189542--79189657 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 41
79189532 ATTGCTAATA
79189542 TCCCAGCTATGGTCTTACACGAAATCACATA-ATGATGCCAATG
1 TCCCAGC-ATGGTCTTACACGAAATCACATACA--ATGCCAATG
* * *
79189585 TCCCAAGCATGGCCTTACACGTAATCACAATACAATGCCAATT
1 TCCC-AGCATGGTCTTACACGAAATCAC-ATACAATGCCAATG
* * *
79189628 TCCTAGACATGGTCTTACATGAAACCACAT
1 TCCCAG-CATGGTCTTACACGAAATCACAT
79189658 CTCGGTAATC
Statistics
Matches: 61, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
42 4 0.07
43 50 0.82
44 6 0.10
45 1 0.02
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.25
Consensus pattern (41 bp):
TCCCAGCATGGTCTTACACGAAATCACATACAATGCCAATG
Found at i:79192871 original size:7 final size:7
Alignment explanation
Indices: 79192855--79192892 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
79192845 ATAAAAATAA
79192855 TTAGGGT
1 TTAGGGT
*
79192862 TTAGGTT
1 TTAGGGT
79192869 TTAGGGT
1 TTAGGGT
79192876 TTAGGGT
1 TTAGGGT
79192883 TTAGGGT
1 TTAGGGT
79192890 TTA
1 TTA
79192893 AAATCCCTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.16, C:0.00, G:0.37, T:0.47
Consensus pattern (7 bp):
TTAGGGT
Found at i:79197980 original size:30 final size:30
Alignment explanation
Indices: 79197944--79198074 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
79197934 GACAAGATTG
* * * * *
79197944 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
79197974 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
79198002 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
79198032 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
79198061 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79198075 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:79198035 original size:58 final size:58
Alignment explanation
Indices: 79197944--79198074 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
79197934 GACAAGATTG
* * * * * *
79197944 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
79198002 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
79198061 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79198075 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:79205932 original size:30 final size:30
Alignment explanation
Indices: 79205896--79206026 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
79205886 GACAAGATTG
* * * * *
79205896 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
79205926 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
79205954 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
79205984 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
79206013 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79206027 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:79205987 original size:58 final size:58
Alignment explanation
Indices: 79205896--79206026 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
79205886 GACAAGATTG
* * * * * *
79205896 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
79205954 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
79206013 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79206027 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:79215869 original size:26 final size:28
Alignment explanation
Indices: 79215840--79215905 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
79215830 AGTGAGTCCG
*
79215840 ACACTTAGTGCTATAT-ATC-AACTCGC
1 ACACTTAGTGCTACATGATCAAACTCGC
79215866 ACACTTAGTGCTACATGATCAAACTCGC
1 ACACTTAGTGCTACATGATCAAACTCGC
79215894 ACACTTAGTGCT
1 ACACTTAGTGCT
79215906 GTACAAGTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
26 15 0.41
27 3 0.08
28 19 0.51
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (28 bp):
ACACTTAGTGCTACATGATCAAACTCGC
Found at i:79223827 original size:28 final size:27
Alignment explanation
Indices: 79223764--79223833 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
79223754 ATAGTGAGTC
*
79223764 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
79223791 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
79223819 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
79223834 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:79231040 original size:6 final size:6
Alignment explanation
Indices: 79231017--79231070 Score: 56
Period size: 6 Copynumber: 8.8 Consensus size: 6
79231007 TATCATAACT
* * *
79231017 AGAATC AAAATG AGAATC AGAATC AGAATC AG-GTGAC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
79231066 AGAAT
1 AGAAT
79231071 GTGAATGCAA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
5 1 0.03
6 34 0.87
7 3 0.08
8 1 0.03
ACGTcount: A:0.50, C:0.13, G:0.20, T:0.17
Consensus pattern (6 bp):
AGAATC
Found at i:79231285 original size:28 final size:27
Alignment explanation
Indices: 79231188--79231351 Score: 206
Period size: 27 Copynumber: 6.0 Consensus size: 27
79231178 AGCATGACTT
* *
79231188 CCAG-AACAGATATTGTGACAGAGTCA
1 CCAGAAACAGATATTGTGGCAGAGCCA
*
79231214 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGAAACAGATATTGTGGCAGAGCCA
*
79231241 CCAG-AACAGATATTTGTGGCATAGCCA
1 CCAGAAACAGATA-TTGTGGCAGAGCCA
*
79231268 CCAGAAACAGAATATTGTGGCATAGCCA
1 CCAGAAACAG-ATATTGTGGCAGAGCCA
*
79231296 CCAGAAACTGAATATTGTGGCAGAGCCA
1 CCAGAAACAG-ATATTGTGGCAGAGCCA
* * *
79231324 CCAGAACCAGATAATGTGGCAAAGCCA
1 CCAGAAACAGATATTGTGGCAGAGCCA
79231351 C
1 C
79231352 TTAACAGAAT
Statistics
Matches: 123, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
26 11 0.09
27 56 0.46
28 53 0.43
29 3 0.02
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
CCAGAAACAGATATTGTGGCAGAGCCA
Found at i:79231544 original size:22 final size:22
Alignment explanation
Indices: 79231513--79231574 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
79231503 AATACGTTTA
*
79231513 GCACACAGCCATAATCAGGTTG
1 GCACAAAGCCATAATCAGGTTG
* *
79231535 GCACAGAGCCAT-ATGTAGGTTG
1 GCACAAAGCCATAAT-CAGGTTG
*
79231557 GCGCAAAGCCATAATCAG
1 GCACAAAGCCATAATCAG
79231575 AATAATTGGC
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
21 2 0.06
22 29 0.88
23 2 0.06
ACGTcount: A:0.32, C:0.24, G:0.26, T:0.18
Consensus pattern (22 bp):
GCACAAAGCCATAATCAGGTTG
Found at i:79231991 original size:27 final size:27
Alignment explanation
Indices: 79231962--79232103 Score: 196
Period size: 27 Copynumber: 5.3 Consensus size: 27
79231952 AGGGCAAAAT
* *
79231962 GGTAATTTTACCCTAAAAGGGTATCTT-
1 GGTAATTCTACCCTACAAGGGTAT-TTC
*
79231989 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
79232016 GGTATTTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
79232043 GATAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
79232070 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
79232097 AGTAATT
1 GGTAATT
79232104 TTGTAAATCG
Statistics
Matches: 102, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 2 0.02
27 100 0.98
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:79232118 original size:27 final size:26
Alignment explanation
Indices: 79232088--79232241 Score: 105
Period size: 27 Copynumber: 5.7 Consensus size: 26
79232078 TACCCTACAG
*
79232088 GGGTATTTCAGTAATTTTGTAAATCGA
1 GGGTATTT-AGTAATTTTATAAATCGA
** * *
79232115 GGGTAGAATGGTAATTTTGTAAATC-A
1 GGGTA-TTTAGTAATTTTATAAATCGA
* * *
79232141 GGGGTACTTTGGTAATTTTACAAGTCGA
1 -GGGTA-TTTAGTAATTTTATAAATCGA
**
79232169 GGGTATTTCAGTAATTTTATAGGTCGA
1 GGGTATTT-AGTAATTTTATAAATCGA
* *
79232196 GGGTATTTTAGTAATTTCACAAATC-A
1 GGGTA-TTTAGTAATTTTATAAATCGA
*
79232222 GGGGTATTTTGTTAATTTTA
1 -GGGTATTTAG-TAATTTTA
79232242 CAAACTAGGG
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
26 9 0.09
27 88 0.86
28 5 0.05
ACGTcount: A:0.29, C:0.07, G:0.24, T:0.40
Consensus pattern (26 bp):
GGGTATTTAGTAATTTTATAAATCGA
Found at i:79232130 original size:81 final size:80
Alignment explanation
Indices: 79231958--79232130 Score: 190
Period size: 81 Copynumber: 2.1 Consensus size: 80
79231948 CCTAAGGGCA
* *
79231958 AAATGGTAATTTTACCCTAAAAGGGTATCTTGGTAATTCTACCCTACAGGGGTATTTCGGTATTT
1 AAATGGTAATTCTACCCTAAAAGGGTATCTTGGTAATTCTACCCTACAGGGGTATTTCAGTATTT
**
79232023 CTACCTTACAAGGGT
66 CTACAATACAAGGGT
** * *
79232038 ATTTCGATAATTCTACCCTACAAGGGTAT-TTCGGTAATTCTACCCTACAGGGGTATTTCAGTAA
1 AAAT-GGTAATTCTACCCTAAAAGGGTATCTT-GGTAATTCTACCCTACAGGGGTATTTCAGT-A
* *
79232102 TTTTGTA-AAT-CGAGGGT
63 -TTTCTACAATACAAGGGT
79232119 AGAATGGTAATT
1 A-AATGGTAATT
79232131 TTGTAAATCA
Statistics
Matches: 75, Mismatches: 13, Indels: 9
0.77 0.13 0.09
Matches are distributed among these distances:
80 4 0.05
81 63 0.84
82 3 0.04
83 5 0.07
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.35
Consensus pattern (80 bp):
AAATGGTAATTCTACCCTAAAAGGGTATCTTGGTAATTCTACCCTACAGGGGTATTTCAGTATTT
CTACAATACAAGGGT
Found at i:79232210 original size:81 final size:81
Alignment explanation
Indices: 79232088--79232244 Score: 206
Period size: 81 Copynumber: 1.9 Consensus size: 81
79232078 TACCCTACAG
* * ***
79232088 GGGTATTTCAGTAATTTTGTAAATCGAGGGTAGAATGGTAATTTTGTAAATCAGGGGTACTTTGG
1 GGGTATTTCAGTAATTTTATAAATCGAGGGTAGAATAGTAATTTCACAAATCAGGGGTACTTTGG
79232153 TAATTTTACAAGTCGA
66 TAATTTTACAAGTCGA
** *** * *
79232169 GGGTATTTCAGTAATTTTATAGGTCGAGGGTATTTTAGTAATTTCACAAATCAGGGGTATTTTGT
1 GGGTATTTCAGTAATTTTATAAATCGAGGGTAGAATAGTAATTTCACAAATCAGGGGTACTTTGG
79232234 TAATTTTACAA
66 TAATTTTACAA
79232245 ACTAGGGGTA
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 64 1.00
ACGTcount: A:0.29, C:0.08, G:0.24, T:0.39
Consensus pattern (81 bp):
GGGTATTTCAGTAATTTTATAAATCGAGGGTAGAATAGTAATTTCACAAATCAGGGGTACTTTGG
TAATTTTACAAGTCGA
Found at i:79232244 original size:27 final size:27
Alignment explanation
Indices: 79232123--79232401 Score: 226
Period size: 27 Copynumber: 10.3 Consensus size: 27
79232113 GAGGGTAGAA
** *
79232123 TGGTAATTTTGTAAATCAGGGGTACTT
1 TGGTAATTTTACAAATCAGGGGTATTT
*
79232150 TGGTAATTTTACAAGTC-GAGGGTATTT
1 TGGTAATTTTACAAATCAG-GGGTATTT
** * **
79232177 CAGTAATTTTATAGGTC-GAGGGTATTT
1 TGGTAATTTTACAAATCAG-GGGTATTT
* *
79232204 TAGTAATTTCACAAATCAGGGGTATTT
1 TGGTAATTTTACAAATCAGGGGTATTT
*
79232231 TGTTAATTTTACAAA-CTAGGGGTATTT
1 TGGTAATTTTACAAATC-AGGGGTATTT
* *
79232258 TGGTAATCTTACAAACCAGGGGTATTT
1 TGGTAATTTTACAAATCAGGGGTATTT
79232285 TGGTAATTTTACAAA-CAAGGGGTATTT
1 TGGTAATTTTACAAATC-AGGGGTATTT
* * * * *
79232312 TGGTGATTTTGCTAATCAAGAGTATTT
1 TGGTAATTTTACAAATCAGGGGTATTT
* * *
79232339 TGGTAA-TTTAGTAAACCAAGGGTATTT
1 TGGTAATTTTA-CAAATCAGGGGTATTT
** * **
79232366 CAGTAATTTTACAAACCAAAGGTATTT
1 TGGTAATTTTACAAATCAGGGGTATTT
*
79232393 TGGTGATTT
1 TGGTAATTT
79232402 GGTAAACTAA
Statistics
Matches: 207, Mismatches: 37, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
26 6 0.03
27 194 0.94
28 7 0.03
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
TGGTAATTTTACAAATCAGGGGTATTT
Found at i:79248460 original size:28 final size:29
Alignment explanation
Indices: 79248428--79248488 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
79248418 ACATACATGT
* *
79248428 ATATGGCCCACTAAGCCC-AATCTCATTC
1 ATATGACCCACTAAGCCCAAATCACATTC
* *
79248456 ATATGACCCATTAGGCCCAAATCACATTC
1 ATATGACCCACTAAGCCCAAATCACATTC
79248485 ATAT
1 ATAT
79248489 TCATGCCTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 15 0.54
29 13 0.46
ACGTcount: A:0.33, C:0.31, G:0.10, T:0.26
Consensus pattern (29 bp):
ATATGACCCACTAAGCCCAAATCACATTC
Found at i:79255816 original size:66 final size:67
Alignment explanation
Indices: 79255700--79255854 Score: 177
Period size: 66 Copynumber: 2.3 Consensus size: 67
79255690 TTAAAATCGA
* * * * * * ** *
79255700 AGCTCTCTTGTACACATGGCGGCCTTCACTTAGCACCACTCATGTGACCTAGCCAC-TTTATCTC
1 AGCTCTCTTGTATACATGGTGTCCTTCACCTAGAACCACACATGCAACCTAGCCACATCTATCTC
79255764 GT
66 GT
* * *
79255766 AGCTCTCTTGTTTACATGGTGTCCTTCACCTGGAACCACACATGCAACCTAGCTACATCTATCTC
1 AGCTCTCTTGTATACATGGTGTCCTTCACCTAGAACCACACATGCAACCTAGCCACATCTATCTC
79255831 GT
66 GT
* *
79255833 AACTCTCTTGTCTACATGGTGT
1 AGCTCTCTTGTATACATGGTGT
79255855 ACACATAGTA
Statistics
Matches: 74, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
66 45 0.61
67 29 0.39
ACGTcount: A:0.21, C:0.31, G:0.16, T:0.32
Consensus pattern (67 bp):
AGCTCTCTTGTATACATGGTGTCCTTCACCTAGAACCACACATGCAACCTAGCCACATCTATCTC
GT
Found at i:79255910 original size:68 final size:68
Alignment explanation
Indices: 79255802--79255953 Score: 172
Period size: 68 Copynumber: 2.3 Consensus size: 68
79255792 CACCTGGAAC
* * *
79255802 CACACATGCAACCTAGCTACATC-T-A--TCTCGTAACTCTCTTGT-CTACATGGTGTACA-CAT
1 CACACATGCGACCTAGCTACCTCATAATGTCTCGTAACTCTCTTGTAC-ACATGGTATACATC-T
79255861 AGTAT
64 AGTAT
* * *
79255866 CACCCATGCGACCTAGCTACCTCATAATGTCTCGTAGCTCTCTTGTACACATGGTATACATCTCG
1 CACACATGCGACCTAGCTACCTCATAATGTCTCGTAACTCTCTTGTACACATGGTATACATCTAG
79255931 TAT
66 TAT
* *
79255934 TACACATGTGACCTAGCTAC
1 CACACATGCGACCTAGCTAC
79255954 ATACCATCTG
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
64 20 0.27
65 1 0.01
66 1 0.01
68 49 0.67
69 2 0.03
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (68 bp):
CACACATGCGACCTAGCTACCTCATAATGTCTCGTAACTCTCTTGTACACATGGTATACATCTAG
TAT
Found at i:79257969 original size:12 final size:13
Alignment explanation
Indices: 79257945--79257973 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
79257935 GGGCTATAAC
79257945 TATTGCATTTATT
1 TATTGCATTTATT
79257958 TATTGC-TTTATT
1 TATTGCATTTATT
79257970 TATT
1 TATT
79257974 CATGCATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:79260306 original size:37 final size:37
Alignment explanation
Indices: 79260253--79260343 Score: 146
Period size: 37 Copynumber: 2.4 Consensus size: 37
79260243 TATAAAAGAA
79260253 GTCTTACCCGGACATAATCTCCACACGTAGTCATCAG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCAG
* *
79260290 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCAG
*
79260327 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
79260344 TTCCAAGTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
37 45 0.92
38 4 0.08
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCAG
Found at i:79260499 original size:49 final size:49
Alignment explanation
Indices: 79260439--79260653 Score: 412
Period size: 49 Copynumber: 4.4 Consensus size: 49
79260429 TCTTGCATTA
79260439 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
79260488 GCCATTGGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
79260537 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
79260586 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
79260635 GCCATTAGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
79260654 CATATATGTA
Statistics
Matches: 162, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 162 1.00
ACGTcount: A:0.30, C:0.32, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:79273044 original size:24 final size:24
Alignment explanation
Indices: 79272983--79273044 Score: 106
Period size: 24 Copynumber: 2.6 Consensus size: 24
79272973 TTACTTATTC
* *
79272983 GCACATATAGTGCCACATAATCTA
1 GCACACATAGTGCTACATAATCTA
79273007 GCACACATAGTGCTACATAATCTA
1 GCACACATAGTGCTACATAATCTA
79273031 GCACACATAGTGCT
1 GCACACATAGTGCT
79273045 GTATTTCTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (24 bp):
GCACACATAGTGCTACATAATCTA
Found at i:79289572 original size:40 final size:40
Alignment explanation
Indices: 79289516--79289697 Score: 303
Period size: 40 Copynumber: 4.5 Consensus size: 40
79289506 ATGATAACCA
* * * *
79289516 GGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTA-ATTCTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCG
79289556 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
79289596 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
79289636 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
79289676 GGCTAAGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
79289698 AGCAAGTAGT
Statistics
Matches: 136, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
40 135 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:79289712 original size:80 final size:79
Alignment explanation
Indices: 79289509--79289729 Score: 284
Period size: 80 Copynumber: 2.8 Consensus size: 79
79289499 TATTCGGATG
* * * * *
79289509 ATAACCAGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTA-ATTCTGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ATTATA-TCCGGGCTAAGTCCCGAAGGC
79289573 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * *
79289589 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TATTATATCCGGGCTAAGTCCCGAAGGCA
79289654 TTTGTGCGAGTTACT
65 TTTGTGCGAGTTACT
* * * *
79289669 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGTTATATTC-AGCTAAATCCCGAAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTA-TTATATCCGGGCTAAGTCCCGAAG
79289730 ATGCTTGGGT
Statistics
Matches: 126, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
79 15 0.12
80 109 0.87
81 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTATTATATCCGGGCTAAGTCCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:79289997 original size:22 final size:21
Alignment explanation
Indices: 79289956--79289999 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
79289946 GAATGTGCAT
79289956 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
79289978 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
79290000 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:79292393 original size:6 final size:6
Alignment explanation
Indices: 79292384--79292461 Score: 86
Period size: 6 Copynumber: 13.0 Consensus size: 6
79292374 AGGTGAAATT
* * * *
79292384 AATAAA AATATAA AATCAA AATCAG AATGAA AATAAA AATAAA AATAAA
1 AATAAA AATA-AA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* *
79292433 GATAAA AATAAA AAT-AA AATAAA ATTAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA
79292462 CATCATCATC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
5 5 0.08
6 52 0.84
7 5 0.08
ACGTcount: A:0.74, C:0.03, G:0.04, T:0.19
Consensus pattern (6 bp):
AATAAA
Done.