Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 275 of 444
Found at i:79300676 original size:46 final size:47
Alignment explanation
Indices: 79300579--79300699 Score: 131
Period size: 46 Copynumber: 2.6 Consensus size: 47
79300569 TATGAGAGCC
* * *
79300579 AGTGTAAGACCTTGTCTGGGACATGACATCAGCATTGAGACGAGAGAT
1 AGTGTAAGA-CATGTCTGGGACATGACATCAGCATCGACACGAGAGAT
* * *
79300627 AGTGTAAGACATGTCTGGGAGATG-CATCAGCCTCGACACGTA-AGCT
1 AGTGTAAGACATGTCTGGGACATGACATCAGCATCGACACG-AGAGAT
* *
79300673 AGTGTAAGGCATGTTTGGGACAT-ACAT
1 AGTGTAAGACATGTCTGGGACATGACAT
79300700 TGGCTATGAG
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
46 39 0.63
47 14 0.23
48 9 0.15
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGACATCAGCATCGACACGAGAGAT
Found at i:79307474 original size:40 final size:39
Alignment explanation
Indices: 79307347--79307476 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
79307337 ATGCTGGAAA
* *
79307347 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
79307387 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
79307427 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
79307467 TTATATCCGG
1 TTATATCCGG
79307477 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:79315487 original size:40 final size:40
Alignment explanation
Indices: 79315400--79315528 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
79315390 ATGCTGGAAA
* *
79315400 TTATATCCGGGTTAAGA-CCGAAGGCAATT-GTGCTAG-CGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTC-G
* *
79315439 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
* * *
79315479 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
79315519 TTATATCCGG
1 TTATATCCGG
79315529 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 17 0.22
40 59 0.77
41 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
Found at i:79318133 original size:40 final size:40
Alignment explanation
Indices: 79318088--79318198 Score: 142
Period size: 39 Copynumber: 2.8 Consensus size: 40
79318078 CTGGAAATTA
*
79318088 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAG-CGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGC-AGTC-G-TAC
*
79318129 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAGTCGTTC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGCAGTCGTAC
79318167 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCA
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGCA
79318199 CGTGGTTATA
Statistics
Matches: 65, Mismatches: 2, Indels: 8
0.87 0.03 0.11
Matches are distributed among these distances:
38 2 0.03
39 37 0.57
40 26 0.40
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTCGTGCAGTCGTAC
Found at i:79318182 original size:39 final size:39
Alignment explanation
Indices: 79318088--79318213 Score: 150
Period size: 40 Copynumber: 3.2 Consensus size: 39
79318078 CTGGAAATTA
* *
79318088 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAG-CG-GC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTCGTTC
79318126 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTCGTTC
* *
79318167 TATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTCGTTC
79318207 TATCCGG
1 TATCCGG
79318214 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 4, Indels: 10
0.85 0.04 0.11
Matches are distributed among these distances:
38 1 0.01
39 36 0.46
40 39 0.50
41 2 0.03
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.22
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTCGTTC
Found at i:79326264 original size:40 final size:39
Alignment explanation
Indices: 79326137--79326266 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
79326127 ATGCTGGAAA
* *
79326137 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
79326177 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
79326217 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
79326257 TTATATCCGG
1 TTATATCCGG
79326267 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:79335584 original size:41 final size:41
Alignment explanation
Indices: 79335539--79335656 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
79335529 TGAAAGATAA
79335539 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
79335580 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
79335610 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
79335651 ATGTAG
1 ATGTAG
79335657 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:79335595 original size:71 final size:71
Alignment explanation
Indices: 79335507--79335670 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
79335497 GAGATGTATC
79335507 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
79335572 AGGACA
66 AGGACA
79335578 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
79335643 AGGACA
66 AGGACA
79335649 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
79335671 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:79343165 original size:41 final size:41
Alignment explanation
Indices: 79343120--79343237 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
79343110 TGAAAGATAA
79343120 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
79343161 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
79343191 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
79343232 ATGTAG
1 ATGTAG
79343238 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:79343176 original size:71 final size:71
Alignment explanation
Indices: 79343088--79343251 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
79343078 GAGATGTATC
79343088 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
79343153 AGGACA
66 AGGACA
79343159 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
79343224 AGGACA
66 AGGACA
79343230 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
79343252 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:79344689 original size:46 final size:48
Alignment explanation
Indices: 79344583--79344801 Score: 177
Period size: 46 Copynumber: 4.6 Consensus size: 48
79344573 CCACATTATG
* * **
79344583 AGAGCCACTATAAGACCATGTCTGGGACATGGCATTGGCATTGAGACG-
1 AGAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCAGCATTGAGACGT
*** *
79344631 AGAATTAGTGTAAGA-CATGTCTGGGACATGCATCAGCCTTGAGACGT
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCATTGAGACGT
*
79344678 A-AGCCAGTGTAAGA-CATGTCTGGGACATGCATC-G-ACT-ACGA-G-
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCATTGA-GACGT
* * * * * *
79344720 ATGTGTCATTGTAAGACCATGTCTGGGACATGGCATCAGCATGGATATGT
1 A-GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCAGCATTGAGACGT
* *
79344770 GAGAGCTAGTGTAAGACCATGTTTGGGACATG
1 -AGAGCCAGTGTAAGACCATGTCTGGGACATG
79344802 GTGTCGGCCT
Statistics
Matches: 135, Mismatches: 24, Indels: 23
0.74 0.13 0.13
Matches are distributed among these distances:
42 1 0.01
43 2 0.01
44 13 0.10
45 15 0.11
46 48 0.36
47 16 0.12
48 12 0.09
49 3 0.02
50 24 0.18
51 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (48 bp):
AGAGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCATTGAGACGT
Found at i:79344858 original size:49 final size:50
Alignment explanation
Indices: 79344731--79344860 Score: 149
Period size: 49 Copynumber: 2.6 Consensus size: 50
79344721 TGTGTCATTG
* * *
79344731 TAAGACCATGTCTGGGACATGGCATCAGCATGGATATGTGAGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAGAGCTAGTA
* ** * *
79344781 TAAGACCATGTTTGGGACATGGTGTCGGCCTCGAT-T-TCGATAG-TCAGTA
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGATATGT-GAGAGCT-AGTA
79344830 TAAGACCATGTCTGGGACATGGCATCGGCAT
1 TAAGACCATGTCTGGGACATGGCATCGGCAT
79344861 TATACCCTAT
Statistics
Matches: 66, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
48 2 0.03
49 35 0.53
50 29 0.44
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.26
Consensus pattern (50 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAGAGCTAGTA
Found at i:79348109 original size:87 final size:87
Alignment explanation
Indices: 79347963--79348123 Score: 261
Period size: 87 Copynumber: 1.9 Consensus size: 87
79347953 TCGTTGGGTG
* * * *
79347963 AAAATTGAACATCTAAAATTAAACAACTTCACATAGAATAAGTTTATCTAGTTTAGGATTTTCCA
1 AAAATTGAACACCTAAAATTAAACAACTTCACACAAAATAAGGTTATCTAGTTTAGGATTTTCCA
79348028 TGTGCAAAACCTTAATGTGCAA
66 TGTGCAAAACCTTAATGTGCAA
*
79348050 AAAATTGAACACCTAAAATTAAACATA-TTCACACAAAATAAGGTTATCTATTTTAGGATTTTCC
1 AAAATTGAACACCTAAAATTAAACA-ACTTCACACAAAATAAGGTTATCTAGTTTAGGATTTTCC
79348114 ATGTGCAAAA
65 ATGTGCAAAA
79348124 ATTAGGTAGG
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
87 67 0.99
88 1 0.01
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.32
Consensus pattern (87 bp):
AAAATTGAACACCTAAAATTAAACAACTTCACACAAAATAAGGTTATCTAGTTTAGGATTTTCCA
TGTGCAAAACCTTAATGTGCAA
Found at i:79356307 original size:30 final size:30
Alignment explanation
Indices: 79356271--79356371 Score: 127
Period size: 28 Copynumber: 3.5 Consensus size: 30
79356261 GACAAGATTG
* * *
79356271 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
*
79356301 GCACTAAGTGTGCGAGTTT--GATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
79356329 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
79356358 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79356372 GATTCACTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 23 0.37
29 20 0.32
30 19 0.31
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:79356365 original size:29 final size:29
Alignment explanation
Indices: 79356271--79356371 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 29
79356261 GACAAGATTG
* * * *
79356271 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTGAAAA-TATATA
*
79356301 GCACTAAGTGTGCGAGTTTG--ATTATATA
1 GCACTAAGTGTGCGAG-TTGAAAATATATA
*
79356329 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTTGAAAATATATA
79356358 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79356372 GATTCACTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 20 0.33
29 22 0.36
30 15 0.25
31 2 0.03
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTGAAAATATATA
Found at i:79358555 original size:24 final size:24
Alignment explanation
Indices: 79358519--79358590 Score: 117
Period size: 24 Copynumber: 3.0 Consensus size: 24
79358509 AAATTTGTAG
79358519 GTCAAATAAATTATGCTAATAAAT
1 GTCAAATAAATTATGCTAATAAAT
* * *
79358543 GTTAAATATATTATACTAATAAAT
1 GTCAAATAAATTATGCTAATAAAT
79358567 GTCAAATAAATTATGCTAATAAAT
1 GTCAAATAAATTATGCTAATAAAT
79358591 TTTGATTCTG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (24 bp):
GTCAAATAAATTATGCTAATAAAT
Found at i:79361426 original size:27 final size:26
Alignment explanation
Indices: 79361378--79361429 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
79361368 GCGAGGCTGC
*
79361378 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
79361404 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
79361430 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:79363798 original size:2 final size:2
Alignment explanation
Indices: 79363791--79363816 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
79363781 AGCAAAACAG
79363791 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
79363817 GTGTGGCGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79363899 original size:27 final size:26
Alignment explanation
Indices: 79363851--79363902 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
79363841 GCGAGGCTGC
*
79363851 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGACACCAGAA
* *
79363877 CAGATATATGTGGCGAGGACACCAGA
1 CAGATAT-TGTGACGAAGACACCAGA
79363903 TTGTAACGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.37, C:0.19, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGACACCAGAA
Found at i:79371007 original size:27 final size:26
Alignment explanation
Indices: 79370967--79371078 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
79370957 AGGAAGCGTC
* *
79370967 CTGGTGGCTATGCCAAAATTATCTGAT
1 CTGGTGGCTCTGCC-ACATTATCTGAT
*
79370994 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
79371021 CTGGTGGCTCTGCCACGATTATCTATAT
1 CTGGTGGCTCTGCCAC-ATTATCT-GAT
* * *
79371049 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
79371075 CTGG
1 CTGG
79371079 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 8 0.11
27 48 0.66
28 17 0.23
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:79371071 original size:54 final size:54
Alignment explanation
Indices: 79370967--79371078 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
79370957 AGGAAGCGTC
*
79370967 CTGGTGGCTATGCCAAAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAAAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* ** * *
79371021 CTGGTGGCTCTGCCACGATTATCTATATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCAAAATTATCT-GATCTGGTGACTCTGCCACATATATCTGTT
79371075 CTGG
1 CTGG
79371079 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCAAAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:79373804 original size:34 final size:33
Alignment explanation
Indices: 79373766--79373829 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 33
79373756 ACTCAGTCAG
*
79373766 GGCCTTAA-CCCATTACAGTATCAGTATCAGTGTC
1 GGCC-TAAGCCCATTACAGTAACAGTA-CAGTGTC
*
79373800 GGCCTAAGCCCATTTCAGTAACAGTACAGT
1 GGCCTAAGCCCATTACAGTAACAGTACAGT
79373830 ACAGATATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
33 7 0.26
34 20 0.74
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (33 bp):
GGCCTAAGCCCATTACAGTAACAGTACAGTGTC
Found at i:79387822 original size:36 final size:36
Alignment explanation
Indices: 79387775--79387846 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
79387765 CATACATGTT
79387775 ATCATATATAAACCTAATTAGCCATTCCAATAGCTA
1 ATCATATATAAACCTAATTAGCCATTCCAATAGCTA
* * *
79387811 ATCATTTATAAACCTGATTAGCCATTCTAATAGCTA
1 ATCATATATAAACCTAATTAGCCATTCCAATAGCTA
79387847 TACATGCCAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.33
Consensus pattern (36 bp):
ATCATATATAAACCTAATTAGCCATTCCAATAGCTA
Found at i:79388807 original size:19 final size:20
Alignment explanation
Indices: 79388770--79388813 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
79388760 CGAGCCTATT
79388770 CCTCGTAAACTTTGTTTTTC
1 CCTCGTAAACTTTGTTTTTC
79388790 CCTCGTAAACTTTGTTTTTC
1 CCTCGTAAACTTTGTTTTTC
79388810 CCTC
1 CCTC
79388814 AATCACGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.14, C:0.30, G:0.09, T:0.48
Consensus pattern (20 bp):
CCTCGTAAACTTTGTTTTTC
Found at i:79391738 original size:49 final size:49
Alignment explanation
Indices: 79391657--79391816 Score: 252
Period size: 49 Copynumber: 3.3 Consensus size: 49
79391647 CCCTTCGGGA
* * * * * *
79391657 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
79391704 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
79391753 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
79391802 CTTATCACATATATA
1 CTTATCACATATATA
79391817 TATCTCATAC
Statistics
Matches: 105, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
47 10 0.10
48 1 0.01
49 94 0.90
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79394563 original size:40 final size:40
Alignment explanation
Indices: 79394514--79394659 Score: 127
Period size: 40 Copynumber: 3.6 Consensus size: 40
79394504 GACTCGCTCG
* * *
79394514 ATTGTCTTCGGGACA-TAGCCCGG-TTATAGTGATTCACACA
1 ATTGCCTTCGGGA-ATTAGCCCGGATT-TAGTAACTCACACA
*
79394554 ATTGCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACA
1 ATTGCCTTCGGGAATTAGCCCGGATTTAGTAACTCACACA
* * * *
79394594 AATGCCTTCGGGAATT-GACCCAGATTTAGTCACTTAGCACA
1 ATTGCCTTCGGGAATTAG-CCCGGATTTAGTAACTCA-CACA
** * *
79394635 AAAGCCTTCGGGACTTAGCCTGGAT
1 ATTGCCTTCGGGAATTAGCCCGGAT
79394660 ACCATTCGAA
Statistics
Matches: 88, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
39 2 0.02
40 60 0.68
41 25 0.28
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (40 bp):
ATTGCCTTCGGGAATTAGCCCGGATTTAGTAACTCACACA
Found at i:79395445 original size:40 final size:40
Alignment explanation
Indices: 79395399--79395727 Score: 621
Period size: 40 Copynumber: 8.3 Consensus size: 40
79395389 GTCACCAGCA
79395399 CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
79395439 CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
79395479 CGGATACATCACTAGCACGAATGCTC-TCGGAACTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
79395518 CGGATAC-TCACTAGCACGAATGCTC-TC-GAACTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
79395555 CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
79395595 CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
79395635 CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
79395675 CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
*
79395715 CGGATATATCACT
1 CGGATACATCACT
79395728 CTCAATTCTC
Statistics
Matches: 285, Mismatches: 1, Indels: 6
0.98 0.00 0.02
Matches are distributed among these distances:
37 17 0.06
38 38 0.13
39 22 0.08
40 208 0.73
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
Found at i:79397907 original size:49 final size:49
Alignment explanation
Indices: 79397826--79397985 Score: 252
Period size: 49 Copynumber: 3.3 Consensus size: 49
79397816 CCCTTCGGGA
* * * * * *
79397826 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
79397873 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
79397922 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
79397971 CTTATCACATATATA
1 CTTATCACATATATA
79397986 TATCTCATAC
Statistics
Matches: 105, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
47 10 0.10
48 1 0.01
49 94 0.90
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79401887 original size:16 final size:16
Alignment explanation
Indices: 79401868--79401899 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
79401858 AATTATTTTA
79401868 TTACAGAATTTCACTT
1 TTACAGAATTTCACTT
*
79401884 TTACATAATTTCACTT
1 TTACAGAATTTCACTT
79401900 ACTCTATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.19, G:0.03, T:0.47
Consensus pattern (16 bp):
TTACAGAATTTCACTT
Found at i:79402375 original size:151 final size:150
Alignment explanation
Indices: 79402102--79402497 Score: 558
Period size: 151 Copynumber: 2.6 Consensus size: 150
79402092 GAAGCTCTCT
* * *
79402102 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATTTGGTAGATGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA-TTGGTACACGTAGTAGC
* * * * * * *
79402167 CTACACTTCGTACTACACATGTGACTTATCCATTTGATACACGTAATAGCCTGCACTTAGTACTA
65 CTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAATAGCCTACACTTAGTACTA
**
79402232 CACACGTGATCGAAGTTAACG
130 CACACGTGATCGAAACTAACG
* * *
79402253 GGTACGCATAGTAGCCTGCACTTAATACTACACATGTGGCCTATCAATTGGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATT-GGTACACGTAGTAGC
* * *
79402318 CTGCACTTAGTACTACACACATGACCTAACCATCTGATACACGTAGTAGCTTACACTTAGTACTA
65 CTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAATAGCCTACACTTAGTACTA
* *
79402383 CACATGTGATCGAAACTATCG
130 CACACGTGATCGAAACTAACG
* * *
79402404 GGTACGCATAGTAGCCTGCATTTAGTACTATACATGCGACCTAACAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAAT-TGGTACACGTAGTAGC
79402469 CTGCACTTAGTACTACACACGTGACCTAA
65 CTGCACTTAGTACTACACACGTGACCTAA
79402498 AATTGTCTTA
Statistics
Matches: 216, Mismatches: 27, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
150 2 0.01
151 213 0.99
152 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (150 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATTGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAATAGCCTACACTTAGTACTAC
ACACGTGATCGAAACTAACG
Found at i:79402407 original size:101 final size:100
Alignment explanation
Indices: 79402110--79402496 Score: 375
Period size: 101 Copynumber: 3.9 Consensus size: 100
79402100 CTGGTACGCA
* * * *
79402110 TAGTAGCCTGCACTTAGTACT--ACACATGCAACCTATCAATTTGGTAGATGTAGTAGCCTACAC
1 TAGTAGCCTGCACTTAGTACTACACACATG--ACCTAACAATCTGGTACACGTAGTAGCCTACAC
* * * * *
79402173 TTCGTACTACACATGTGACTTATCCATTTGATACACG
64 TTAGTACTACACATGTGACCTATCAATTGGGTACACG
* * * * * * * * *
79402210 TAATAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA-CGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACATGACCTAA--CAATCTGGTACACGTAGTAGCCTACAC
* *
79402274 TTAATACTACACATGTGGCCTATCAATTGGGTACACG
64 TTAGTACTACACATGTGACCTATCAATTGGGTACACG
* * *
79402311 TAGTAGCCTGCACTTAGTACTACACACATGACCTAACCATCTGATACACGTAGTAGCTTACACTT
1 TAGTAGCCTGCACTTAGTACTACACACATGACCTAACAATCTGGTACACGTAGTAGCCTACACTT
** * * * * *
79402376 AGTACTACACATGTGATCGAAACTATCGGGTACGCA
66 AGTACTACACATGTGA-CCTATCAATTGGGTACACG
* * *** *
79402412 TAGTAGCCTGCATTTAGTACTATACATGCGACCTAACAATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACATGACCTAACAATCTGGTACACGTAGTAGCCTACACTT
*
79402477 AGTACTACACACGTGACCTA
66 AGTACTACACATGTGACCTA
79402497 AAATTGTCTT
Statistics
Matches: 228, Mismatches: 53, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
99 1 0.00
100 58 0.25
101 161 0.71
102 8 0.04
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACATGACCTAACAATCTGGTACACGTAGTAGCCTACACTT
AGTACTACACATGTGACCTATCAATTGGGTACACG
Found at i:79402495 original size:50 final size:50
Alignment explanation
Indices: 79402099--79402497 Score: 370
Period size: 50 Copynumber: 7.9 Consensus size: 50
79402089 ACCGAAGCTC
* * ** *
79402099 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * * * * *
79402149 TTTGGTAGATGTAGTAGCCTACACTTCGTACTACACATGTGACTTATCCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * * * *
79402199 TTTGATACACGTAATAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA--CAA
* * * * * *
79402251 -CGGGTACGCATAGTAGCCTGCACTTAATACTACACATGTGGCCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
** *
79402300 T-TGGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACCA
1 TCT-GGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * ** *
79402350 TCTGATACACGTAGTAGCTTACACTTAGTACTACACATGTGATCGAAACTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA-CCTAACAA
* * * * * *
79402401 TCGGGTACGCATAGTAGCCTGCATTTAGTACTATACATGCGACCTAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
*
79402451 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
79402498 AATTGTCTTA
Statistics
Matches: 270, Mismatches: 73, Indels: 12
0.76 0.21 0.03
Matches are distributed among these distances:
49 2 0.01
50 194 0.72
51 73 0.27
52 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
Found at i:79407370 original size:40 final size:39
Alignment explanation
Indices: 79407326--79407504 Score: 164
Period size: 40 Copynumber: 4.5 Consensus size: 39
79407316 GCTCGATTGT
* * *
79407326 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGACATAGCCCGGTT-TAGTAACTCGCACAAATGC
*
79407366 CTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCATAAATGC
1 CTTCGGGACA-TAGCCCGG-TTTAGTAACTCGCACAAATGC
* * *
79407406 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAGCCCGG-TTTAGTAACTCGCACAAATGC
* * * * *
79407446 CTTCGGGA-ATTGACCCAGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACATAG-CCC-GGTTTAGTAAC-TCGCACAAATGC
*
79407487 CTTCGGGACTTAGCCCGG
1 CTTCGGGACATAGCCCGG
79407505 ATATCATTCA
Statistics
Matches: 112, Mismatches: 20, Indels: 14
0.77 0.14 0.10
Matches are distributed among these distances:
39 2 0.02
40 84 0.75
41 24 0.21
42 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CTTCGGGACATAGCCCGGTTTAGTAACTCGCACAAATGC
Found at i:79407424 original size:80 final size:81
Alignment explanation
Indices: 79407326--79407504 Score: 227
Period size: 80 Copynumber: 2.2 Consensus size: 81
79407316 GCTCGATTGT
* * * * *
79407326 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAG
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGA-CCCAGATTTAG
* * *
79407390 TAAC-TCGCATAAATGC
65 TAACTTAGCACAAAAGC
* * *
79407406 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCAGATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCAGATTTAGT
*
79407471 CACTTAGCACAAAAGC
66 AACTTAGCACAAAAGC
79407487 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
79407505 ATATCATTCA
Statistics
Matches: 84, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
80 57 0.68
81 27 0.32
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCAGATTTAGT
AACTTAGCACAAAAGC
Found at i:79407491 original size:41 final size:39
Alignment explanation
Indices: 79407354--79407506 Score: 171
Period size: 40 Copynumber: 3.8 Consensus size: 39
79407344 TTATAGTGAT
*
79407354 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAAC
1 TCGCACAAATGCCTTCGGGAATTA-CCCGGATTTAGTAAC
* * * *
79407394 TCGCATAAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC
* *
79407434 TCGCACAAATGCCTTCGGGAATTGACCCAGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC
* * *
79407474 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 -TCGCACAAATGCCTTCGGGAATTA-CCCGGAT
79407507 ATCATTCAAA
Statistics
Matches: 94, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
40 67 0.71
41 27 0.29
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
TCGCACAAATGCCTTCGGGAATTACCCGGATTTAGTAAC
Found at i:79415480 original size:39 final size:40
Alignment explanation
Indices: 79415384--79415563 Score: 204
Period size: 40 Copynumber: 4.5 Consensus size: 40
79415374 GCTCGATTGT
* * * *
79415384 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGC
*
79415424 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCA-AAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
79415463 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
79415503 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGGATTTAGTAAC-TCGCACAAATGC
79415544 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGACTTAGCCCGGAT
79415564 ATCATTCGAA
Statistics
Matches: 118, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 34 0.29
40 54 0.46
41 29 0.25
42 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:79415480 original size:79 final size:81
Alignment explanation
Indices: 79415384--79415561 Score: 236
Period size: 79 Copynumber: 2.2 Consensus size: 81
79415374 GCTCGATTGT
* * * *
79415384 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAG
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGA-CCCGGATTTAG
* *
79415448 TAAC-TCGCA-AAATGC
65 TAACTTAGCACAAAAGC
* * *
79415463 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
*
79415528 CACTTAGCACAAAAGC
66 AACTTAGCACAAAAGC
79415544 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
79415562 ATATCATTCG
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
79 58 0.68
80 5 0.06
81 22 0.26
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
AACTTAGCACAAAAGC
Found at i:79426887 original size:50 final size:50
Alignment explanation
Indices: 79426756--79426904 Score: 223
Period size: 48 Copynumber: 3.0 Consensus size: 50
79426746 TGTGAATGTG
*
79426756 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATA
* *
79426806 -A-GTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAGTGTGAAATA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AGTGTGAAATA
* *
79426854 TATATATAAGATATGTATATATGGTAAAGCCGAATGGCTAGTGTGAAATA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATA
79426904 T
1 T
79426905 GTAGGCGATG
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
47 1 0.01
48 42 0.48
49 2 0.02
50 42 0.48
51 1 0.01
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.31
Consensus pattern (50 bp):
TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATA
Found at i:79426922 original size:50 final size:50
Alignment explanation
Indices: 79426760--79426928 Score: 181
Period size: 48 Copynumber: 3.4 Consensus size: 50
79426750 AATGTGTATA
* *
79426760 TATGAGATAT--GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAG
1 TATGAGATATGCGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
*
79426808 TATGAGATATGC--ATATGTGGTAAAGCCGAATGG-TCAGTGTGAAATATATA
1 TATGAGATATGCGTATATGTGGTAAAGCCGAATGGCT-AGTGTG-AA-ATATG
* *
79426858 TATAAGATAT--GTATATATGGTAAAGCCGAATGGCTAGTGTGAAATATG
1 TATGAGATATGCGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
* * *
79426906 TAGGCGATGTGCGTATATTGTGG
1 TATGAGATATGCGTATA-TGTGG
79426929 CCGAACGACC
Statistics
Matches: 99, Mismatches: 11, Indels: 19
0.77 0.09 0.15
Matches are distributed among these distances:
47 1 0.01
48 46 0.46
49 4 0.04
50 43 0.43
51 5 0.05
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (50 bp):
TATGAGATATGCGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
Found at i:79427162 original size:37 final size:37
Alignment explanation
Indices: 79427054--79427162 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
79427044 GGAAATATAT
*
79427054 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
79427091 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * * *
79427128 TCCGGGTAAGACTCGATAACTTCGTGTGGGGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
79427163 CGTCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:79429575 original size:34 final size:33
Alignment explanation
Indices: 79429520--79429585 Score: 80
Period size: 34 Copynumber: 2.0 Consensus size: 33
79429510 AGTTTTAGTC
* * *
79429520 TGGGCCTTAGCCTATTACAGTATCAGTATCAGTG
1 TGGGCCTGAGCCCATTACAGTAACAGTA-CAGTG
79429554 TGGGCCTGAGCCCATCT-CAGTAACAGTACAGT
1 TGGGCCTGAGCCCAT-TACAGTAACAGTACAGT
79429586 ACAGATATGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 4 0.14
34 23 0.82
35 1 0.04
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (33 bp):
TGGGCCTGAGCCCATTACAGTAACAGTACAGTG
Found at i:79435268 original size:492 final size:488
Alignment explanation
Indices: 79434232--79436458 Score: 2664
Period size: 492 Copynumber: 4.6 Consensus size: 488
79434222 TTTGGGGGCG
* * ** *
79434232 TTACAGTACTGAATGTCTTCCCATACAGAACAGTCGAGGTAAATCATTCTGAATTCTACACTATT
1 TTACTGTACTGAATGTCTT-CCATACAGTACAGTCGAGGTAAATCATTCTGAATTCGGCACTTTT
* * * * *
79434297 AGGGAAAATATTACTCGACTCAAATCTTA--TTGTTAGTATAATTGATAAGATTAAACTCCAAGC
65 AGGGTAAATATTACTCGACTCAAACCTTATTTTGTTAATAGAATTGACAAGATTAAACTCCAAGC
** * *
79434360 TTATGACTCTATTAAGACATCTAGTGATTGAGATGATTATATGGGTTCTGTTAATATGAGTAACA
130 TCGTGACTCTATTAAGACATCTAGTGATCGAGATGATTATATGAGTTCTGTTAATATGAGTAACA
* * * *
79434425 -T-T-G----------TGCAGGAAATCCCTCAAAAGCACGTAATGGAACCAAGTACCAGTCCATT
195 TTGTAGTCAAACTCTTTGCAGGAAATCCCTCAAAAGAATGTAATGGAACCAAGTTCCAGTCCATG
* ** * **
79434477 TG-TCGAAAATAGAATGACTCATGAAGAATAAATGTTGCAATTTGATGAACTAGATGAATGGTGG
260 TGATCG-AAACAGAATGACTCATGAAGAACGAATGTTGCAAATTGATGAACTAGATGAATGGCAG
* * * *
79434541 ACACATCTCAATGAGAAACTGAGAGTACAAAATGCAGAATCAAAGCGACACCATGATGATCATAT
324 ACACATCTCAAGGAGAAACTGAGAGTACACAATGCAGAATCAAAGC-ACACCATGATAAGCATAT
* * *
79434606 GTATGGACCACACCAAATTAAGGTTGGAGACAAGGTATTAATAGAGAAAATGGACCCACGTATTG
388 GGATGGAACACACCAAATTAAGGTTGGAGACAAGGTATTAATAGATAAAATGGACCCACGTATTG
* *
79434671 TCACTTCAGAGCATAATGCAAGCAGA-TCAACTCCTT
453 TCACTTCAGAGCTTAATGCAAGCAGAGT-AACTTCTT
* * * * * * *
79434707 TTACGGTACTGAATGTATTCCTATATAATACAGTTGAGGTAAATCATTCTAAATTCGACACTTTT
1 TTACTGTACTGAATGTCTTCC-ATACAGTACAGTCGAGGTAAATCATTCTGAATTCGGCACTTTT
79434772 AGGGTAAATATTACTCGACTCAAACCTTATTTTGTTAATAGAATTGACAAGATTAAACTCCAAGC
65 AGGGTAAATATTACTCGACTCAAACCTTATTTTGTTAATAGAATTGACAAGATTAAACTCCAAGC
* * * *
79434837 TTGTGATTTTATTAAGACATCTAGTGATCGAGATGATTATATGAGTTCTGTTAATATGAGTAGCA
130 TCGTGACTCTATTAAGACATCTAGTGATCGAGATGATTATATGAGTTCTGTTAATATGAGTAACA
* *
79434902 TTGTAGCTCAAACCTCTTTGCAGGAAATCCCTCAAAAGAATGTAATGGAACCACGTTTCAGTCCA
195 TTGTAG-TCAAA-CTCTTTGCAGGAAATCCCTCAAAAGAATGTAATGGAACCAAGTTCCAGTCCA
* * *
79434967 TGTGATAGAAACAGAATGACTCATGAATAACGAATGTTGCAAA-TCACTGAACTAGATGAATGGC
258 TGTGATCGAAACAGAATGACTCATGAAGAACGAATGTTGCAAATTGA-TGAACTAGATGAATGGC
* * ** *
79435031 AGACACATGTCAAGGAGAAATTGAGAGTACATGATGCAGAA-CTAAAGCACCGCCATGATAAGCA
322 AGACACATCTCAAGGAGAAACTGAGAGTACACAATGCAGAATC-AAAGCA-CACCATGATAAGCA
* * * * * * *
79435095 TAAGGATGGAACACACCATATTAAGGTTGAACACAAGGCATTAATAGATAAAATGGACCCATGTG
385 TATGGATGGAACACACCAAATTAAGGTTGGAGACAAGGTATTAATAGATAAAATGGACCCACGTA
79435160 TTGTCACTTCAGAGCTTAATGCAAGCAGAGTAACTTCTT
450 TTGTCACTTCAGAGCTTAATGCAAGCAGAGTAACTTCTT
* * *
79435199 TTACTGTACTGAATGTCTTCTCACACAGTACAGTCGAGGTAAATCATTTTGAATTCGGCACTATT
1 TTACTGTACTGAATGTCTTC-CATACAGTACAGTCGAGGTAAATCATTCTGAATTCGGCACTTTT
* *
79435264 AGGGTAAATATTACTCGACTCAAACCATATTTTGTTAGTAGAATTGACAAGATTAAACTCCAAGC
65 AGGGTAAATATTACTCGACTCAAACCTTATTTTGTTAATAGAATTGACAAGATTAAACTCCAAGC
* * * * *
79435329 TCGGGACTCTAATAAGACATCTATTGATCTAGATGATTATATGGGTTCTGTTAATATGAGTAACA
130 TCGTGACTCTATTAAGACATCTAGTGATCGAGATGATTATATGAGTTCTGTTAATATGAGTAACA
**
79435394 TTGTA-T---A------G-A--AAATCCCTCGGAAGAATGTAATGGAACCAAGTTCCAGTCCATG
195 TTGTAGTCAAACTCTTTGCAGGAAATCCCTCAAAAGAATGTAATGGAACCAAGTTCCAGTCCATG
* * * **
79435446 TGA-CGAAAAGAGAATGACTCATGAAGAATGAATGTTG-AAATTTGATGAACTGGATGAATGGTG
260 TGATCG-AAACAGAATGACTCATGAAGAACGAATGTTGCAAA-TTGATGAACTAGATGAATGGCA
* * * * * *
79435509 GACACATCTCAAGGAGAAACTGAGAGTACACGATACAGAATCAAAGTGACACCATAATGAGCATC
323 GACACATCTCAAGGAGAAACTGAGAGTACACAATGCAGAATCAAAG-CACACCATGATAAGCATA
*
79435574 TGTATGGAACACACCAAATTAAGGTTGGAGACAAGGTATTAATAGATAAAATGGACCCACGTATT
387 TGGATGGAACACACCAAATTAAGGTTGGAGACAAGGTATTAATAGATAAAATGGACCCACGTATT
* * * * *
79435639 ATCACTTCAAAGCTTAATGCAAACAAAGCAAC-TCTTT
452 GTCACTTCAGAGCTTAATGCAAGCAGAGTAACTTC-TT
* * *
79435676 TTA-TGACACTGAATGTCTTCCCATATAGTACAGTCGAGGTAAATCATTCTGAATTCAGCACTTT
1 TTACTG-TACTGAATGTCTT-CCATACAGTACAGTCGAGGTAAATCATTCTGAATTCGGCACTTT
* **
79435740 TAGGGTAAATATTACTCGACTCAAACCTTATTTTGTTAATAAAATTGATGAGATTAAACTCCAAG
64 TAGGGTAAATATTACTCGACTCAAACCTTATTTTGTTAATAGAATTGACAAGATTAAACTCCAAG
* * * * * * *
79435805 CTCGTGATTCTATTAAGACATATAGTGATAGAGATTATTATACGAGTTCTATTAATATAAGTAAC
129 CTCGTGACTCTATTAAGACATCTAGTGATCGAGATGATTATATGAGTTCTGTTAATATGAGTAAC
* * *
79435870 ATTGTGGCTCAAACTTCTTTTGCAGGAAATCCCTCAGAAGAATGTAATGGAACCACGTTCCAGTC
194 ATTGTAG-TCAAAC-TC-TTTGCAGGAAATCCCTCAAAAGAATGTAATGGAACCAAGTTCCAGTC
* * * * *
79435935 CATGTGATGGAAATAGTATGCCTCATGAATAACGAATGTTGCAAATTGATGAACTAGATGAATGG
256 CATGTGATCGAAACAGAATGACTCATGAAGAACGAATGTTGCAAATTGATGAACTAGATGAATGG
* *
79436000 CAGACACATGTCAAGGAGAAACTGAGGGTACACAATGCAGAA-CTAAAGTGC-CACCATGATAAG
321 CAGACACATCTCAAGGAGAAACTGAGAGTACACAATGCAGAATC-AAA--GCACACCATGATAAG
*
79436063 CATATGGATGGAACACACCAAATTAAGGTTGGAGACAAGGTATTATTAGATAAAATGGACCCACG
383 CATATGGATGGAACACACCAAATTAAGGTTGGAGACAAGGTATTAATAGATAAAATGGACCCACG
* * * *
79436128 TATTGTCATTTCAGAGCTTAATGCAAGCGGAGAAACTACTT
448 TATTGTCACTTCAGAGCTTAATGCAAGCAGAGTAACTTCTT
*
79436169 TTA-TGGTACTGAATGTCTTCCATTA-AGTACAGTCGAGGTAAATCATTTTGAATTCGGCACTTT
1 TTACT-GTACTGAATGTCTTCCA-TACAGTACAGTCGAGGTAAATCATTCTGAATTCGGCACTTT
* ** *
79436232 TTGGGTAAATATTTTTTGACTCAAACCTTATTTTGTTAATAGAATTGACAAGATTAAACTCCAAG
64 TAGGGTAAATATTACTCGACTCAAACCTTATTTTGTTAATAGAATTGACAAGATTAAACTCCAAG
* * * * * *
79436297 CTCGTGACTCTGTTAAGACTTTTAGTGATCAAGATGATTATATGAGTTCTGGTAATATGAGTAAT
129 CTCGTGACTCTATTAAGACATCTAGTGATCGAGATGATTATATGAGTTCTGTTAATATGAGTAAC
* * * * * * *
79436362 ATTGTGGTTCAAACTTCTTTGCAGGAAATTCCTCGAAATAACGTAATTGAACCATGTTCCAGTCC
194 ATTGTAG-TCAAAC-TCTTTGCAGGAAATCCCTCAAAAGAATGTAATGGAACCAAGTTCCAGTCC
* * * *
79436427 ATGCG-TGGAAACAAAATGACTTATGAAGAACG
257 ATGTGATCGAAACAGAATGACTCATGAAGAACG
79436459 TGTAACAGCC
Statistics
Matches: 1496, Mismatches: 200, Indels: 97
0.83 0.11 0.05
Matches are distributed among these distances:
474 2 0.00
475 80 0.05
476 8 0.01
477 484 0.32
478 6 0.00
479 3 0.00
480 2 0.00
482 1 0.00
487 1 0.00
490 23 0.02
491 50 0.03
492 576 0.39
493 253 0.17
494 6 0.00
495 1 0.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (488 bp):
TTACTGTACTGAATGTCTTCCATACAGTACAGTCGAGGTAAATCATTCTGAATTCGGCACTTTTA
GGGTAAATATTACTCGACTCAAACCTTATTTTGTTAATAGAATTGACAAGATTAAACTCCAAGCT
CGTGACTCTATTAAGACATCTAGTGATCGAGATGATTATATGAGTTCTGTTAATATGAGTAACAT
TGTAGTCAAACTCTTTGCAGGAAATCCCTCAAAAGAATGTAATGGAACCAAGTTCCAGTCCATGT
GATCGAAACAGAATGACTCATGAAGAACGAATGTTGCAAATTGATGAACTAGATGAATGGCAGAC
ACATCTCAAGGAGAAACTGAGAGTACACAATGCAGAATCAAAGCACACCATGATAAGCATATGGA
TGGAACACACCAAATTAAGGTTGGAGACAAGGTATTAATAGATAAAATGGACCCACGTATTGTCA
CTTCAGAGCTTAATGCAAGCAGAGTAACTTCTT
Found at i:79436203 original size:969 final size:967
Alignment explanation
Indices: 79434232--79436366 Score: 3166
Period size: 969 Copynumber: 2.2 Consensus size: 967
79434222 TTTGGGGGCG
* * * **
79434232 TTACAGTACTGAATGTCTTCCCATACAGAACAGTCGAGGTAAATCATTCTGAATTCTACACTATT
1 TTACTGTACTGAATGTCTT-CCATACAGTACAGTCGAGGTAAATCATTTTGAATTCGGCACTATT
* * * * *
79434297 AGGGAAAATATTACTCGACTCAAATCT-TATTGTTAGTATAATTGATAAGATTAAACTCCAAGCT
65 AGGGTAAATATTACTCGACTCAAACCTATTTTGTTAGTAGAATTGACAAGATTAAACTCCAAGCT
**
79434361 TATGACTCTATTAAGACATCTAGTGAT-TGAGATGATTATATGGGTTCTGTTAATATGAGTAACA
130 CGTGACTCTATTAAGACATCTAGTGATCT-AGATGATTATATGGGTTCTGTTAATATGAGTAACA
* * * * * *
79434425 TTGTGCAGGAAATCCCTCAAAAGCACGTAATGGAACCAAGTACCAGTCCATTTGTCGAAAATAGA
194 TTGTACAGAAAATCCCTCAAAAGAACGTAATGGAACCAAGTACCAGTCCATGTGACGAAAAGAGA
* *
79434490 ATGACTCATGAAGAATAAATGTTGCAATTTGATGAACTAGATGAATGGTGGACACATCTCAATGA
259 ATGACTCATGAAGAATAAATGTTGAAATTTGATGAACTAGATGAATGGTGGACACATCTCAAGGA
* * * *
79434555 GAAACTGAGAGTACAAAATGCAGAATCAAAGCGACACCATGATGATCATATGTATGGACCACACC
324 GAAACTGAGAGTACAAAATACAGAATCAAAGCGACACCATAATGAGCATATGTATGGAACACACC
* *
79434620 AAATTAAGGTTGGAGACAAGGTATTAATAGAGAAAATGGACCCACGTATTGTCACTTCAGAGCAT
389 AAATTAAGGTTGGAGACAAGGTATTAATAGAGAAAATGGACCCACGTATTATCACTTCAAAGCAT
* * * ** * *
79434685 AATGCAAGCAGATCAACTCCTTTTACGGTACTGAATGTATTCCTATATAATACAGTTGAGGTAAA
454 AATGCAAACAAAGCAACTCCTTTTACGACACTGAATGTATTCCCATATAATACAGTCGAGGTAAA
*
79434750 TCATTCTAAATTCGACACTTTTAGGGTAAATATTACTCGACTCAAACCTTATTTTGTTAATAGAA
519 TCATTCTAAATTCGACACTTTTAGGGTAAATATTACTCGACTCAAACCTTATTTTGTTAATAAAA
* * * * *
79434815 TTGACAAGATTAAACTCCAAGCTTGTGATTTTATTAAGACATCTAGTGATCGAGATGATTATATG
584 TTGACAAGATTAAACTCCAAGCTCGTGATTCTATTAAGACATATAGTGATAGAGATGATTATACG
* * *
79434880 AGTTCTGTTAATATGAGTAGCATTGTAGCTCAAACCTCTTTGCAGGAAATCCCTCAAAAGAATGT
649 AGTTCTATTAATATAAGTAACATTGTAGCTCAAACCTCTTTGCAGGAAATCCCTCAAAAGAATGT
*
79434945 AATGGAACCACGTTTCAGTCCATGTGATAGAAACAGAATGACTCATGAATAACGAATGTTGCAAA
714 AATGGAACCACGTTCCAGTCCATGTGATAGAAACAGAATGACTCATGAATAACGAATGTTGCAAA
* **
79435010 TCACTGAACTAGATGAATGGCAGACACATGTCAAGGAGAAATTGAGAGTACATGATGCAGAACTA
779 TCACTGAACTAGATGAATGGCAGACACATGTCAAGGAGAAACTGAGAGTACACAATGCAGAACTA
* *
79435075 AAGCACCGCCATGATAAGCATAAGGATGGAACACACCATATTAAGGTTGAACACAAGGCATTAAT
844 AAGCACCACCATGATAAGCATAAGGATGGAACACACCAAATTAAGGTTGAACACAAGGCATTAAT
* * * *
79435140 AGATAAAATGGACCCATGTGTTGTCACTTCAGAGCTTAATGCAAGCAGAGTAACTTCTT
909 AGATAAAATGGACCCACGTATTGTCACTTCAGAGCTTAATGCAAGCAGAGAAACTACTT
*
79435199 TTACTGTACTGAATGTCTTCTCACACAGTACAGTCGAGGTAAATCATTTTGAATTCGGCACTATT
1 TTACTGTACTGAATGTCTTC-CATACAGTACAGTCGAGGTAAATCATTTTGAATTCGGCACTATT
79435264 AGGGTAAATATTACTCGACTCAAACCATATTTTGTTAGTAGAATTGACAAGATTAAACTCCAAGC
65 AGGGTAAATATTACTCGACTCAAACC-TATTTTGTTAGTAGAATTGACAAGATTAAACTCCAAGC
* * *
79435329 TCGGGACTCTAATAAGACATCTATTGATCTAGATGATTATATGGGTTCTGTTAATATGAGTAACA
129 TCGTGACTCTATTAAGACATCTAGTGATCTAGATGATTATATGGGTTCTGTTAATATGAGTAACA
* ** * *
79435394 TTGTATAGAAAATCCCTCGGAAGAATGTAATGGAACCAAGTTCCAGTCCATGTGACGAAAAGAGA
194 TTGTACAGAAAATCCCTCAAAAGAACGTAATGGAACCAAGTACCAGTCCATGTGACGAAAAGAGA
* *
79435459 ATGACTCATGAAGAATGAATGTTGAAATTTGATGAACTGGATGAATGGTGGACACATCTCAAGGA
259 ATGACTCATGAAGAATAAATGTTGAAATTTGATGAACTAGATGAATGGTGGACACATCTCAAGGA
** * *
79435524 GAAACTGAGAGTACACGATACAGAATCAAAGTGACACCATAATGAGCATCTGTATGGAACACACC
324 GAAACTGAGAGTACAAAATACAGAATCAAAGCGACACCATAATGAGCATATGTATGGAACACACC
* *
79435589 AAATTAAGGTTGGAGACAAGGTATTAATAGATAAAATGGACCCACGTATTATCACTTCAAAGCTT
389 AAATTAAGGTTGGAGACAAGGTATTAATAGAGAAAATGGACCCACGTATTATCACTTCAAAGCAT
* * * *
79435654 AATGCAAACAAAGCAACTCTTTTTATGACACTGAATGTCTTCCCATATAGTACAGTCGAGGTAAA
454 AATGCAAACAAAGCAACTCCTTTTACGACACTGAATGTATTCCCATATAATACAGTCGAGGTAAA
*
79435719 TCATTCTGAATTC-AGCACTTTTAGGGTAAATATTACTCGACTCAAACCTTATTTTGTTAATAAA
519 TCATTCTAAATTCGA-CACTTTTAGGGTAAATATTACTCGACTCAAACCTTATTTTGTTAATAAA
** *
79435783 ATTGATGAGATTAAACTCCAAGCTCGTGATTCTATTAAGACATATAGTGATAGAGATTATTATAC
583 ATTGACAAGATTAAACTCCAAGCTCGTGATTCTATTAAGACATATAGTGATAGAGATGATTATAC
* * *
79435848 GAGTTCTATTAATATAAGTAACATTGTGGCTCAAACTTCTTTTGCAGGAAATCCCTCAGAAGAAT
648 GAGTTCTATTAATATAAGTAACATTGTAGCTCAAACCTC-TTTGCAGGAAATCCCTCAAAAGAAT
* * * *
79435913 GTAATGGAACCACGTTCCAGTCCATGTGATGGAAATAGTATGCCTCATGAATAACGAATGTTGCA
712 GTAATGGAACCACGTTCCAGTCCATGTGATAGAAACAGAATGACTCATGAATAACGAATGTTGCA
* *
79435978 AATTGA-TGAACTAGATGAATGGCAGACACATGTCAAGGAGAAACTGAGGGTACACAATGCAGAA
777 AA-TCACTGAACTAGATGAATGGCAGACACATGTCAAGGAGAAACTGAGAGTACACAATGCAGAA
** * * * *
79436042 CTAAAGTGCCACCATGATAAGCATATGGATGGAACACACCAAATTAAGGTTGGAGACAAGGTATT
841 CTAAAGCACCACCATGATAAGCATAAGGATGGAACACACCAAATTAAGGTTGAACACAAGGCATT
* * *
79436107 ATTAGATAAAATGGACCCACGTATTGTCATTTCAGAGCTTAATGCAAGCGGAGAAACTACTT
906 AATAGATAAAATGGACCCACGTATTGTCACTTCAGAGCTTAATGCAAGCAGAGAAACTACTT
*
79436169 TTA-TGGTACTGAATGTCTTCCATTA-AGTACAGTCGAGGTAAATCATTTTGAATTCGGCACTTT
1 TTACT-GTACTGAATGTCTTCCA-TACAGTACAGTCGAGGTAAATCATTTTGAATTCGGCACTAT
* ** * *
79436232 TTGGGTAAATATTTTTTGACTCAAACCTTATTTTGTTAATAGAATTGACAAGATTAAACTCCAAG
64 TAGGGTAAATATTACTCGACTCAAACC-TATTTTGTTAGTAGAATTGACAAGATTAAACTCCAAG
* * * * * * *
79436297 CTCGTGACTCTGTTAAGACTTTTAGTGATCAAGATGATTATATGAGTTCTGGTAATATGAGTAAT
128 CTCGTGACTCTATTAAGACATCTAGTGATCTAGATGATTATATGGGTTCTGTTAATATGAGTAAC
79436362 ATTGT
193 ATTGT
79436367 GGTTCAAACT
Statistics
Matches: 1046, Mismatches: 113, Indels: 16
0.89 0.10 0.01
Matches are distributed among these distances:
966 1 0.00
967 81 0.08
968 2 0.00
969 688 0.66
970 272 0.26
971 2 0.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (967 bp):
TTACTGTACTGAATGTCTTCCATACAGTACAGTCGAGGTAAATCATTTTGAATTCGGCACTATTA
GGGTAAATATTACTCGACTCAAACCTATTTTGTTAGTAGAATTGACAAGATTAAACTCCAAGCTC
GTGACTCTATTAAGACATCTAGTGATCTAGATGATTATATGGGTTCTGTTAATATGAGTAACATT
GTACAGAAAATCCCTCAAAAGAACGTAATGGAACCAAGTACCAGTCCATGTGACGAAAAGAGAAT
GACTCATGAAGAATAAATGTTGAAATTTGATGAACTAGATGAATGGTGGACACATCTCAAGGAGA
AACTGAGAGTACAAAATACAGAATCAAAGCGACACCATAATGAGCATATGTATGGAACACACCAA
ATTAAGGTTGGAGACAAGGTATTAATAGAGAAAATGGACCCACGTATTATCACTTCAAAGCATAA
TGCAAACAAAGCAACTCCTTTTACGACACTGAATGTATTCCCATATAATACAGTCGAGGTAAATC
ATTCTAAATTCGACACTTTTAGGGTAAATATTACTCGACTCAAACCTTATTTTGTTAATAAAATT
GACAAGATTAAACTCCAAGCTCGTGATTCTATTAAGACATATAGTGATAGAGATGATTATACGAG
TTCTATTAATATAAGTAACATTGTAGCTCAAACCTCTTTGCAGGAAATCCCTCAAAAGAATGTAA
TGGAACCACGTTCCAGTCCATGTGATAGAAACAGAATGACTCATGAATAACGAATGTTGCAAATC
ACTGAACTAGATGAATGGCAGACACATGTCAAGGAGAAACTGAGAGTACACAATGCAGAACTAAA
GCACCACCATGATAAGCATAAGGATGGAACACACCAAATTAAGGTTGAACACAAGGCATTAATAG
ATAAAATGGACCCACGTATTGTCACTTCAGAGCTTAATGCAAGCAGAGAAACTACTT
Found at i:79440886 original size:45 final size:45
Alignment explanation
Indices: 79440825--79441039 Score: 152
Period size: 46 Copynumber: 4.7 Consensus size: 45
79440815 ATATCCGTGT
*
79440825 CGATGCCATGTCCCAGACATGGTCTTATACTAAC-ACATCTCGTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAACTACATCTCG-AGGC
* **
79440871 CGATGCATGTCCCAGACATGTCTTACAATGGCTTACATCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAAC-TACATCTCGAGGC
* * * * **
79440917 TGATGCATGTCCCAGACATGTCTTACACT-ACT-CTTGTTTCAATAC
1 CGATGCATGTCCCAGACATGTCTTACACTAACTAC--ATCTCGAGGC
* ** * * *
79440962 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAACT-ACAT-CTCGAGGC
*
79441010 CAATGCATGTCCCAGACATGTCTTACACTA
1 CGATGCATGTCCCAGACATGTCTTACACTA
79441040 GCACACAAAT
Statistics
Matches: 134, Mismatches: 24, Indels: 22
0.74 0.13 0.12
Matches are distributed among these distances:
43 1 0.01
44 10 0.07
45 25 0.19
46 65 0.49
47 23 0.17
48 8 0.06
49 1 0.01
50 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTAACTACATCTCGAGGC
Found at i:79443226 original size:55 final size:54
Alignment explanation
Indices: 79443097--79443280 Score: 219
Period size: 54 Copynumber: 3.4 Consensus size: 54
79443087 TTGGTAAGAC
* *
79443097 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGA
1 AAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGA
* * *
79443151 AAGGAAATCATGTAAGACCATGACAAGACATGGCATTGATGAGTTACTATAAGGAA
1 AAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGG-A
** * * * *
79443207 AAGG-TCCCATGCAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAAGC
1 AAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGA
* *
79443259 AAGGATACCACGTAAGACCATG
1 AAGGAAACCATGTAAGACCATG
79443281 TCTAGACATG
Statistics
Matches: 110, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
52 4 0.04
53 19 0.17
54 41 0.37
55 41 0.37
56 5 0.05
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (54 bp):
AAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGA
Found at i:79445003 original size:28 final size:29
Alignment explanation
Indices: 79444944--79445013 Score: 124
Period size: 28 Copynumber: 2.4 Consensus size: 29
79444934 ATTTTTGGCA
*
79444944 AAATGACCATTTTGCCGCTAGACTTTCAC
1 AAATGACCATTTTGCCGCCAGACTTTCAC
79444973 AAATGACCATTTTGCC-CCAGACTTTCAC
1 AAATGACCATTTTGCCGCCAGACTTTCAC
79445001 AAATGACCATTTT
1 AAATGACCATTTT
79445014 ACCTTTAGAC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
28 24 0.60
29 16 0.40
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.31
Consensus pattern (29 bp):
AAATGACCATTTTGCCGCCAGACTTTCAC
Found at i:79448165 original size:24 final size:24
Alignment explanation
Indices: 79448132--79448235 Score: 158
Period size: 23 Copynumber: 4.4 Consensus size: 24
79448122 CTGGAGGCCT
* *
79448132 AGCCTCTTTTAATAACTAGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
79448157 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
79448181 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
79448204 AGCCC-TTTAATAACTGGGGCACA
1 AGCCCTTTTAATAACTGGGGCATA
79448227 AGCCCTTTT
1 AGCCCTTTT
79448236 TCACTTCCTC
Statistics
Matches: 75, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
23 45 0.60
24 26 0.35
25 4 0.05
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:79448314 original size:20 final size:20
Alignment explanation
Indices: 79448291--79448331 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
79448281 TTACATCACT
*
79448291 TGCATATCATACATATCATG
1 TGCATATCATACATACCATG
79448311 TGCATATCATACATACCATG
1 TGCATATCATACATACCATG
79448331 T
1 T
79448332 TTATCAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.34
Consensus pattern (20 bp):
TGCATATCATACATACCATG
Found at i:79450128 original size:40 final size:40
Alignment explanation
Indices: 79450069--79450255 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
79450059 CATTGGAATG
* * * *
79450069 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
79450109 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
79450149 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * **
79450189 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
79450229 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
79450256 CGAGCGAGTC
Statistics
Matches: 124, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.02
40 117 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:79450171 original size:80 final size:80
Alignment explanation
Indices: 79450069--79450222 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
79450059 CATTGGAATG
* * ** *
79450069 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
79450134 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
79450149 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
79450214 ATCGTGCGA
66 ATCGTGCGA
79450223 ATTACCATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:79450237 original size:80 final size:80
Alignment explanation
Indices: 79450073--79450255 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
79450063 GGAATGATAT
* ** * *
79450073 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
79450138 TGCGAGTTGTTATAT
66 TGCGAATTACCATAA
* * * * *
79450153 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
79450218 TGCGAATTACCATAA
66 TGCGAATTACCATAA
* *
79450233 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
79450256 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATTACCATAA
Found at i:79450275 original size:80 final size:80
Alignment explanation
Indices: 79450073--79450290 Score: 181
Period size: 80 Copynumber: 2.7 Consensus size: 80
79450063 GGAATGATAT
* * * * * * * *
79450073 CCGGGCTAAGTCCCGAAGGCAAT-TATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGACAATCGA-GCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
79450137 GTGCGAGTTGTTATAT
65 GTGCGAATTACCATAA
* * * * * * *
79450153 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
79450218 TGCGAATTACCATAA
66 TGCGAATTACCATAA
* * * *
79450233 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGA-CCCGAAGG
79450291 TACGTGATTC
Statistics
Matches: 109, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 94 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATTACCATAA
Found at i:79456572 original size:40 final size:41
Alignment explanation
Indices: 79456527--79456616 Score: 123
Period size: 40 Copynumber: 2.2 Consensus size: 41
79456517 CGGAATATAA
* *
79456527 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGC-CGCTAGCACAAATGCCTTCGGGTCTTAAC
*
79456567 CCGGATAT-AGCCGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCCGCTAGCACAAATGCCTTCGGGTCTTAAC
79456607 CCGGATATAA
1 CCGGATATAA
79456617 TTTCCAGCAT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
38 1 0.02
39 4 0.09
40 38 0.86
41 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (41 bp):
CCGGATATAAGCCGCTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:79456631 original size:40 final size:40
Alignment explanation
Indices: 79456543--79456654 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 40
79456533 ATAAGCATGT
* * *
79456543 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCGCCA
* ***
79456583 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCGCCA
* * *
79456623 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
79456655 CATTCAATTT
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCGCCA
Found at i:79464582 original size:40 final size:39
Alignment explanation
Indices: 79464471--79464622 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
79464461 TATAACATGT
* ** *
79464471 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
*
79464511 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *** *
79464551 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* * *
79464591 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
79464623 CATTCAATTT
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 93 0.98
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
Found at i:79464605 original size:80 final size:80
Alignment explanation
Indices: 79464471--79464622 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
79464461 TATAACATGT
* *
79464471 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
79464536 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
79464551 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
79464614 CCCGGATAT
64 CCCGGATAT
79464623 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:79469293 original size:40 final size:40
Alignment explanation
Indices: 79469235--79469420 Score: 171
Period size: 40 Copynumber: 4.7 Consensus size: 40
79469225 CATTGGAATG
* * * *
79469235 ATAT-CGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
79469274 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
79469314 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * **
79469354 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
79469394 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
79469421 CGAGTGAGTC
Statistics
Matches: 123, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
39 7 0.06
40 112 0.91
41 4 0.03
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:79469402 original size:80 final size:80
Alignment explanation
Indices: 79469239--79469420 Score: 211
Period size: 80 Copynumber: 2.3 Consensus size: 80
79469229 GGAATGATAT
* ** * *
79469239 CGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCGT
1 CGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCGT
* *** *
79469304 GCGAGTTGTTATATC
66 GCGAATTACCATAAC
* * * * *
79469319 CGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCGT
1 CGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCGT
79469384 GCGAATTACCATAAC
66 GCGAATTACCATAAC
* *
79469399 CGGGCTAGGTCCCGAAGACAAT
1 CGGGCTAAGTCCCGAAGGCAAT
79469421 CGAGTGAGTC
Statistics
Matches: 83, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
80 83 1.00
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCGT
GCGAATTACCATAAC
Found at i:79475950 original size:46 final size:46
Alignment explanation
Indices: 79475897--79475985 Score: 178
Period size: 46 Copynumber: 1.9 Consensus size: 46
79475887 TACGAGTATC
79475897 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGACA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGACA
79475943 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGG
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGG
79475986 TCGCATGCGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.40, C:0.15, G:0.27, T:0.18
Consensus pattern (46 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGACA
Found at i:79486221 original size:46 final size:46
Alignment explanation
Indices: 79486168--79486256 Score: 178
Period size: 46 Copynumber: 1.9 Consensus size: 46
79486158 TGTACAGTAC
79486168 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGACA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGACA
79486214 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGG
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGG
79486257 TCGCATGCGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.40, C:0.15, G:0.27, T:0.18
Consensus pattern (46 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGACA
Found at i:79493758 original size:46 final size:46
Alignment explanation
Indices: 79493705--79493793 Score: 178
Period size: 46 Copynumber: 1.9 Consensus size: 46
79493695 GAGATGTATC
79493705 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGACA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGACA
79493751 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGG
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGG
79493794 TCGCATGCGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.40, C:0.15, G:0.27, T:0.18
Consensus pattern (46 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGACA
Found at i:79495377 original size:24 final size:24
Alignment explanation
Indices: 79495341--79495444 Score: 158
Period size: 23 Copynumber: 4.4 Consensus size: 24
79495331 CTGGAGGCCT
*
79495341 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
79495366 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
79495390 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
79495413 AGCCC-TTTAATAACTAGGGCACA
1 AGCCCTTTTAATAACTGGGGCATA
79495436 AGCCCTTTT
1 AGCCCTTTT
79495445 TCACTTCCTC
Statistics
Matches: 75, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
23 44 0.59
24 27 0.36
25 4 0.05
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:79495523 original size:20 final size:20
Alignment explanation
Indices: 79495500--79495560 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
79495490 TTACATCACT
79495500 TGCATATCATACATATCATG
1 TGCATATCATACATATCATG
*
79495520 TGCATATCATACATGTCATG
1 TGCATATCATACATATCATG
*
79495540 TGCATATCATACATACCATG
1 TGCATATCATACATATCATG
79495560 T
1 T
79495561 TTATCAAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
TGCATATCATACATATCATG
Found at i:79497605 original size:80 final size:80
Alignment explanation
Indices: 79497471--79497624 Score: 227
Period size: 80 Copynumber: 1.9 Consensus size: 80
79497461 CATTGGAATG
* * ** *
79497471 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
79497536 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * *
79497551 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
79497616 ATCGTGCGA
66 ATCGTGCGA
79497625 ATCACTATAA
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
80 65 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:79497639 original size:40 final size:40
Alignment explanation
Indices: 79497471--79497678 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 40
79497461 CATTGGAATG
* * * * *
79497471 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCACT
* ***
79497511 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCACT
* * * * *
79497551 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCACT
* * *
79497591 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAATCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCACT
* * * * * * *
79497631 ATAACCGGGCTAGGTCCTGAAGACAATCGAGCGAGTCGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCACT
79497671 ATATCCGG
1 ATATCCGG
79497679 TTAAATCCCG
Statistics
Matches: 138, Mismatches: 30, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 138 1.00
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCACT
Found at i:79497822 original size:159 final size:158
Alignment explanation
Indices: 79497591--79497904 Score: 459
Period size: 159 Copynumber: 2.0 Consensus size: 158
79497581 GCAAGTTACC
* * *
79497591 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAATCACTATAACCGGGCTAGGTCCTGAAGACA
1 AAATCCGGGTTAAGACCCAAAGGCAATCGTGCGAATCACTATAACCGGGCTACGTCCCGAAGACA
* *
79497656 ATCGAGCGAGTCGCTATATCCGGTTAAATCCCGAAGGTACGTGATTCG-GAAGTGAGCAATCTTG
66 ATCGAGCGAGTCACTATATCCGGTTAAATCCCGAAGGTACGTGATTCGAGAA-TAAGCAATCTTG
*
79497720 CTGTAAAAATTTCAGTTTATACACTTGTGA
130 CTGT-AAAATTTCAGTTAATACACTTGTGA
* * * *
79497750 AAATCCGGGTTAAGACCCAAAGGCAATTGTGCGAGTCACTATAACCGGGCTTCGTCCCGAAGGCA
1 AAATCCGGGTTAAGACCCAAAGGCAATCGTGCGAATCACTATAACCGGGCTACGTCCCGAAGACA
* * * * *
79497815 TTTGAGCGAGTCATTATATCCGGTTAAATTCCGAAGGTACGTGATTCGAGAATAAGCGATCTTGC
66 ATCGAGCGAGTCACTATATCCGGTTAAATCCCGAAGGTACGTGATTCGAGAATAAGCAATCTTGC
*
79497880 TGTAAAATTTCAGTTAATACGCTTG
131 TGTAAAATTTCAGTTAATACACTTG
79497905 AAAAATTCCA
Statistics
Matches: 138, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
158 20 0.14
159 115 0.83
160 3 0.02
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (158 bp):
AAATCCGGGTTAAGACCCAAAGGCAATCGTGCGAATCACTATAACCGGGCTACGTCCCGAAGACA
ATCGAGCGAGTCACTATATCCGGTTAAATCCCGAAGGTACGTGATTCGAGAATAAGCAATCTTGC
TGTAAAATTTCAGTTAATACACTTGTGA
Found at i:79517119 original size:30 final size:31
Alignment explanation
Indices: 79517069--79517126 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
79517059 CTAATTCAAA
79517069 CTTTAGCAAAATTATAATTTTGCCCCTAAAT
1 CTTTAGCAAAATTATAATTTTGCCCCTAAAT
* *
79517100 CTTT-GCAGAATTATGATTTTGCCCCTA
1 CTTTAGCAAAATTATAATTTTGCCCCTA
79517127 GGCTCGGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (31 bp):
CTTTAGCAAAATTATAATTTTGCCCCTAAAT
Found at i:79522416 original size:53 final size:54
Alignment explanation
Indices: 79522348--79522555 Score: 224
Period size: 53 Copynumber: 3.9 Consensus size: 54
79522338 TTTCCTTTTT
* * * *
79522348 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCTTTAT-
1 GAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * *
79522401 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTATA
* * * *
79522455 GTAACTCATCAATGCCATGTCTTGACATAGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * * * *
79522510 GAACTTATCAATGCCAT-TCCTTGGCATGGTCTTATATGATATCCTT
1 GAACTCACCAATGCCATGT-CTTGACATGGTCTTACATGGTATCCTT
79522556 ATCTTACCAA
Statistics
Matches: 131, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
52 2 0.02
53 44 0.34
54 39 0.30
55 44 0.34
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.37
Consensus pattern (54 bp):
GAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
Found at i:79522471 original size:55 final size:53
Alignment explanation
Indices: 79522359--79522543 Score: 210
Period size: 55 Copynumber: 3.4 Consensus size: 53
79522349 AACTTACCAT
* * * *
79522359 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCTTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* *
79522412 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * * * *
79522467 TGCCATGTCTTGACATAGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
* *
79522521 TGCCATTCCTTGGCATGGTCTTA
1 TGCCATGCCTTGACATGGTCTTA
79522544 TATGATATCC
Statistics
Matches: 111, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
52 2 0.02
53 34 0.31
54 29 0.26
55 44 0.40
56 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:79522589 original size:47 final size:47
Alignment explanation
Indices: 79522534--79522655 Score: 172
Period size: 47 Copynumber: 2.6 Consensus size: 47
79522524 CATTCCTTGG
* * * *
79522534 CATGGTCTTATATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCAGGTTCCAAA
* * *
79522581 GATGGTCTTACATGGTATCCTTGTCTTACCAAATTCTAGGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCAGGTTCCAAA
*
79522628 CATGGCCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
79522656 ATGCCAATGC
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCAGGTTCCAAA
Found at i:79522970 original size:12 final size:12
Alignment explanation
Indices: 79522953--79522977 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79522943 CATAACTCAG
79522953 TAATAACAATAA
1 TAATAACAATAA
79522965 TAATAACAATAA
1 TAATAACAATAA
79522977 T
1 T
79522978 TGCGTAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (12 bp):
TAATAACAATAA
Found at i:79528207 original size:79 final size:78
Alignment explanation
Indices: 79528088--79528232 Score: 220
Period size: 79 Copynumber: 1.8 Consensus size: 78
79528078 CCTTCGAGAC
* *
79528088 TTTAAACCCGGATATATTTCCAGCATATAGCCCACGGACCTTAAGTTCAGAA-ATAATTCCAGCA
1 TTTAAACCCGGATATAATTCCAGCACATAGCCCACGGACCTTAAG-TCAGAATATAATTCCAG-A
79528152 TATAGCCTGCGGGTA
64 TATAGCCTGCGGGTA
** *
79528167 TTTAAACCCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGTCCGAATATAATTCCAGATA
1 TTTAAACCCGGATATAATTCCAGCACATAGCCCACGGACCTTAAGTCAGAATATAATTCCAGATA
79528232 T
66 T
79528233 CATGCATATT
Statistics
Matches: 60, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
78 9 0.15
79 51 0.85
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (78 bp):
TTTAAACCCGGATATAATTCCAGCACATAGCCCACGGACCTTAAGTCAGAATATAATTCCAGATA
TAGCCTGCGGGTA
Found at i:79541694 original size:17 final size:17
Alignment explanation
Indices: 79541643--79541699 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 17
79541633 GTAGTTTTGC
* *
79541643 TGAGCTAGCAAATATGG
1 TGAGCTTGCAGATATGG
* *
79541660 TGCGCTTGCAG-TGTTGG
1 TGAGCTTGCAGAT-ATGG
79541677 TGAGCTTGCAGATATGG
1 TGAGCTTGCAGATATGG
79541694 TGAGCT
1 TGAGCT
79541700 CGCAAAGTCA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
16 1 0.03
17 30 0.94
18 1 0.03
ACGTcount: A:0.21, C:0.14, G:0.35, T:0.30
Consensus pattern (17 bp):
TGAGCTTGCAGATATGG
Found at i:79549611 original size:19 final size:18
Alignment explanation
Indices: 79549587--79549629 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
79549577 ATAATGTTCA
79549587 TATTTTAAAAATAATTAAT
1 TATTTT-AAAATAATTAAT
* *
79549606 TATTTTATAATATTTAAT
1 TATTTTAAAATAATTAAT
79549624 TATTTT
1 TATTTT
79549630 TCGACAAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
TATTTTAAAATAATTAAT
Found at i:79551646 original size:40 final size:40
Alignment explanation
Indices: 79551601--79551767 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
79551591 CGGAATATAA
79551601 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
79551641 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
79551681 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
79551721 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
79551760 CCGGATAT
1 CCGGATAT
79551768 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:79558460 original size:40 final size:40
Alignment explanation
Indices: 79558415--79558544 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
79558405 CGGAATATAA
79558415 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
79558455 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
79558495 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
79558535 CCGGATATAA
1 CCGGATATAA
79558545 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:79558565 original size:80 final size:80
Alignment explanation
Indices: 79558431--79558578 Score: 190
Period size: 80 Copynumber: 1.9 Consensus size: 80
79558421 ATAACCACGT
* * *
79558431 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAACGCCTTCGGGACTTAGCC
79558496 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** ** *
79558511 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCATTAACGTCTTCGGGACTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAACGCCTTCGGGACTTAGC
79558575 CCGG
65 CCGG
79558579 GTATCATTCA
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.25
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAACGCCTTCGGGACTTAGCC
CGGATGTAGCCACTA
Found at i:79566309 original size:40 final size:40
Alignment explanation
Indices: 79566264--79566393 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
79566254 CGGAATATAA
79566264 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
79566304 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
79566344 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
79566384 CCGGATATAA
1 CCGGATATAA
79566394 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:79566414 original size:80 final size:80
Alignment explanation
Indices: 79566280--79566427 Score: 190
Period size: 80 Copynumber: 1.9 Consensus size: 80
79566270 ATAACCACGT
* * *
79566280 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAACGCCTTCGGGACTTAGCC
79566345 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** ** *
79566360 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCATTAACGTCTTCGGGACTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAACGCCTTCGGGACTTAGC
79566424 CCGG
65 CCGG
79566428 GTATCATTCA
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.25
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAACGCCTTCGGGACTTAGCC
CGGATGTAGCCACTA
Found at i:79569338 original size:33 final size:34
Alignment explanation
Indices: 79569288--79569380 Score: 88
Period size: 32 Copynumber: 2.8 Consensus size: 34
79569278 CAAGCCCATC
* *
79569288 GGGCCTAAGCCC--ATTCAGATAACAGTGATACT
1 GGGCCTAGGCCCTTATTCAGATAACAGTGAAACT
* * *
79569320 GGGCC-AGGGCCCTT-TTCAGATTATA-TTAAACT
1 GGGCCTA-GGCCCTTATTCAGATAACAGTGAAACT
79569352 GGGCCTTAGGCCCTTATTCAGATAACAGT
1 GGGCC-TAGGCCCTTATTCAGATAACAGT
79569381 ATGGCCCATA
Statistics
Matches: 47, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
31 1 0.02
32 19 0.40
33 16 0.34
34 10 0.21
35 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (34 bp):
GGGCCTAGGCCCTTATTCAGATAACAGTGAAACT
Found at i:79571031 original size:24 final size:24
Alignment explanation
Indices: 79570999--79571095 Score: 149
Period size: 24 Copynumber: 4.0 Consensus size: 24
79570989 AACTCATGCT
* *
79570999 CCTTGATCAGCTCTTAAATCTTCTC
1 CCTT-ATCAGCTCCTAAATCCTCTC
*
79571024 CTTTATCAGCTCCTAAATCCTCTC
1 CCTTATCAGCTCCTAAATCCTCTC
79571048 CCTTATCAGCTCCTAAATCCTCTC
1 CCTTATCAGCTCCTAAATCCTCTC
*
79571072 CCTTATCAGCTCCTAAATCTTCTC
1 CCTTATCAGCTCCTAAATCCTCTC
79571096 TTGACAGCCT
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
24 64 0.96
25 3 0.04
ACGTcount: A:0.21, C:0.37, G:0.05, T:0.37
Consensus pattern (24 bp):
CCTTATCAGCTCCTAAATCCTCTC
Found at i:79580519 original size:51 final size:50
Alignment explanation
Indices: 79580392--79580571 Score: 188
Period size: 51 Copynumber: 3.6 Consensus size: 50
79580382 ATCAGATACG
* * * *
79580392 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATC--CGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGATCAA-AGTCATTGGTACA
* * * *
79580441 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTCATTGAGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGCGATCAAAGTCATTG-GTACA
* *
79580492 CATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGT-A-TGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGA-TCAA-AGTCATTGGTACA
* *
79580542 CGTAGTAGCCTGCACTTAGTAATACACACG
1 CATAGTAGCCTGCACTTAGTACTACACACG
79580572 TGTACTCACA
Statistics
Matches: 109, Mismatches: 17, Indels: 9
0.81 0.13 0.07
Matches are distributed among these distances:
48 3 0.03
49 32 0.29
50 32 0.29
51 36 0.33
52 3 0.03
53 3 0.03
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGATCAAAGTCATTGGTACA
Found at i:79580604 original size:101 final size:98
Alignment explanation
Indices: 79580388--79580573 Score: 291
Period size: 101 Copynumber: 1.9 Consensus size: 98
79580378 AGCTATCAGA
*
79580388 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACACGTAGTAGCCTG
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATACGGTACACGTAGTAGCCTG
* *
79580453 CACTTAGTACTACACACGTGATCGAAGTCATTGAG
66 CACTTAGTAATACACACGTGATC-AAG-CAATGAG
* * *
79580488 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTATGGTACACGTAGTAGCCT
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGAC-CAACAATACGGTACACGTAGTAGCCT
79580553 GCACTTAGTAATACACACGTG
65 GCACTTAGTAATACACACGTG
79580574 TACTCACAAT
Statistics
Matches: 80, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
100 38 0.47
101 42 0.52
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (98 bp):
TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATACGGTACACGTAGTAGCCTG
CACTTAGTAATACACACGTGATCAAGCAATGAG
Found at i:79583829 original size:50 final size:50
Alignment explanation
Indices: 79583699--79583940 Score: 265
Period size: 50 Copynumber: 4.8 Consensus size: 50
79583689 AGCCGAAGCT
* * * *
79583699 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACATGTGACC-AACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * *
79583748 ATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * *
79583798 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CC
** * * * * *
79583849 AT-TGAGTATGCATAGTAGCCTGCACTTAGTACTACGCATGCGACTTAA-C
1 ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* *
79583898 AGTATGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 A-TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
79583941 TACTCACAAT
Statistics
Matches: 159, Mismatches: 29, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
49 42 0.26
50 79 0.50
51 38 0.24
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.25
Consensus pattern (50 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
Found at i:79583971 original size:101 final size:100
Alignment explanation
Indices: 79583702--79583971 Score: 275
Period size: 101 Copynumber: 2.7 Consensus size: 100
79583692 CGAAGCTATC
* * * * *
79583702 TGATACGCATAGTAGCCTGCACTTAGTACTACACATGTGAC-CAACAATCCGGTA-CACGTAGTA
1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTCAACAAT-GGGTATCACATAGTA
* * *
79583765 GCCTGCACTTAGTACTACACACGTGACCTCACCATC
65 GCCTGCACTTAGTACTACACACGCGACCTCAACATA
* * *
79583801 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TCGAAGTCATTGAGTAT-GCATAG
1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTC-AA--CAATGGGTATCACATAG
* * *
79583864 TAGCCTGCACTTAGTACTACGCATGCGA-CTTAACAGTA
63 TAGCCTGCACTTAGTACTACACACGCGACCTCAACA-TA
* *
79583902 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGTACTC-ACAATGGGTCATTCACATTG
1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG-ACTCAACAATGGGT-A-TCACATAG
79583966 T-GCCTG
63 TAGCCTG
79583972 TTCCAAAGGT
Statistics
Matches: 141, Mismatches: 19, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
99 44 0.31
100 8 0.06
101 78 0.55
102 9 0.06
103 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (100 bp):
TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTCAACAATGGGTATCACATAGTAG
CCTGCACTTAGTACTACACACGCGACCTCAACATA
Found at i:79586737 original size:22 final size:22
Alignment explanation
Indices: 79586686--79586738 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
79586676 TGCATCATTA
79586686 AATTACATTATGAATACATAAT
1 AATTACATTATGAATACATAAT
*
79586708 AACATACATT-TGAATAACATGAAT
1 AA-TTACATTATGAAT-ACAT-AAT
79586732 -ATTACAT
1 AATTACAT
79586739 CTATTTATAC
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
22 12 0.46
23 11 0.42
24 3 0.12
ACGTcount: A:0.49, C:0.11, G:0.06, T:0.34
Consensus pattern (22 bp):
AATTACATTATGAATACATAAT
Found at i:79589944 original size:56 final size:56
Alignment explanation
Indices: 79589877--79590201 Score: 347
Period size: 56 Copynumber: 5.8 Consensus size: 56
79589867 ACATTTTTTA
79589877 GTTGGCATCGATATGTGATTCCGAAATATGTGTACGAGTAAGACCACGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGAAATATGTGTACGAGTAAGACCACGTTTAATAC
* * * * *
79589933 GTTGGCATCGATATGTGATTCTG--ATATGCATGTACAAGTAAGATCACATTTAATGC
1 GTTGGCATCGATATGTGATTCCGAAATATG--TGTACGAGTAAGACCACGTTTAATAC
* * * * * *
79589989 ATTGGCATTGATATGAGATTTCGAAATATGTTTGCGAGTAAGACCACGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGAAATATGTGTACGAGTAAGACCACGTTTAATAC
* **
79590045 GTTGGCATCGATATGTGATTTC--AATATGTGTATGCTTGTAAGACCACGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGAAATATGTGTA--CGAGTAAGACCACGTTTAATAC
* * *
79590101 ATTGGCATTGATATGTGATTCCGATATGTATGTGT--GAGTAAGACCACGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGA-A-ATATGTGTACGAGTAAGACCACGTTTAATAC
* * * * * *
79590157 GTTGGCATTGATATGTGATTCTGATATGTTTTTACGAGTAAGACC
1 GTTGGCATCGATATGTGATTCCGAAATATGTGTACGAGTAAGACC
79590202 CTATCTGGGA
Statistics
Matches: 221, Mismatches: 36, Indels: 24
0.79 0.13 0.09
Matches are distributed among these distances:
54 17 0.08
56 191 0.86
58 5 0.02
59 1 0.00
60 7 0.03
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (56 bp):
GTTGGCATCGATATGTGATTCCGAAATATGTGTACGAGTAAGACCACGTTTAATAC
Found at i:79590028 original size:112 final size:111
Alignment explanation
Indices: 79589878--79590185 Score: 417
Period size: 112 Copynumber: 2.8 Consensus size: 111
79589868 CATTTTTTAG
* * *
79589878 TTGGCATCGATATGTGATTCCGAAATATGTGTACGAGTAAGACCACGTTTAATACGTTGGCATCG
1 TTGGCATTGATATGTGATTCCGAAATATGTTTGCGAGTAAGACCACGTTTAATACGTTGGCATCG
* *
79589943 ATATGTGATTCTGATATGCATGTA-CAAGTAAGATCACATTTAATGCA
66 ATATGTGATTCTGATATG--TGTAGCAAGTAAGACCACATTTAATACA
* *
79589990 TTGGCATTGATATGAGATTTCGAAATATGTTTGCGAGTAAGACCACGTTTAATACGTTGGCATCG
1 TTGGCATTGATATGTGATTCCGAAATATGTTTGCGAGTAAGACCACGTTTAATACGTTGGCATCG
* ** *
79590055 ATATGTGATT-TCAATATGTGTATGCTTGTAAGACCACGTTTAATACA
66 ATATGTGATTCT-GATATGTGTA-GCAAGTAAGACCACATTTAATACA
*
79590102 TTGGCATTGATATGTGATTCCG--ATATGTATGTGTGAGTAAGACCACGTTTAATACGTTGGCAT
1 TTGGCATTGATATGTGATTCCGAAATATGT-T-TGCGAGTAAGACCACGTTTAATACGTTGGCAT
*
79590165 TGATATGTGATTCTGATATGT
64 CGATATGTGATTCTGATATGT
79590186 TTTTACGAGT
Statistics
Matches: 174, Mismatches: 16, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
110 10 0.06
111 2 0.01
112 161 0.93
113 1 0.01
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.35
Consensus pattern (111 bp):
TTGGCATTGATATGTGATTCCGAAATATGTTTGCGAGTAAGACCACGTTTAATACGTTGGCATCG
ATATGTGATTCTGATATGTGTAGCAAGTAAGACCACATTTAATACA
Found at i:79590197 original size:168 final size:167
Alignment explanation
Indices: 79589877--79590201 Score: 429
Period size: 168 Copynumber: 1.9 Consensus size: 167
79589867 ACATTTTTTA
*
79589877 GTTGGCATCGATATGTGATTCCGAAATATGTGTACGAGTAAGACCACGTTTAATACGTTGGCATC
1 GTTGGCATCGATATGTGATTCC-AAATATGTGTACGAGTAAGACCACGTTTAATACATTGGCATC
* * *
79589942 GATATGTGATTCTGATATGCATGTACAAGTAAGATCACATTTAATGCATTGGCATTGATATGAGA
65 GATATGTGATTCCGATATGCATGTACAAGTAAGACCACATTTAATACATTGGCATTGATATGAGA
*
79590007 TTTCGAAATATGTTTGCGAGTAAGACCACGTTTAATAC
130 TTTCGAAATATGTTTACGAGTAAGACCACGTTTAATAC
* **
79590045 GTTGGCATCGATATGTGATTTC-AATATGTGTATGCTTGTAAGACCACGTTTAATACATTGGCAT
1 GTTGGCATCGATATGTGATTCCAAATATGTGTA--CGAGTAAGACCACGTTTAATACATTGGCAT
* * *** * * *
79590109 TGATATGTGATTCCGATATGTATGTGTGAGTAAGACCACGTTTAATACGTTGGCATTGATATGTG
64 CGATATGTGATTCCGATATGCATGTACAAGTAAGACCACATTTAATACATTGGCATTGATATGAG
* * *
79590174 A-TTCTGATATGTTTTTACGAGTAAGACC
129 ATTTC-GAAATATGTTTACGAGTAAGACC
79590202 CTATCTGGGA
Statistics
Matches: 135, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
166 10 0.07
167 3 0.02
168 122 0.90
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (167 bp):
GTTGGCATCGATATGTGATTCCAAATATGTGTACGAGTAAGACCACGTTTAATACATTGGCATCG
ATATGTGATTCCGATATGCATGTACAAGTAAGACCACATTTAATACATTGGCATTGATATGAGAT
TTCGAAATATGTTTACGAGTAAGACCACGTTTAATAC
Found at i:79594298 original size:22 final size:22
Alignment explanation
Indices: 79594270--79594315 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
79594260 TATAATGATT
*
79594270 TGAAACAACATTATTTCTGGTC
1 TGAAACAACATTATTGCTGGTC
*
79594292 TGAAACAACATTATTGGTGGTC
1 TGAAACAACATTATTGCTGGTC
79594314 TG
1 TG
79594316 GGATAAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (22 bp):
TGAAACAACATTATTGCTGGTC
Found at i:79596022 original size:56 final size:56
Alignment explanation
Indices: 79595934--79596201 Score: 347
Period size: 56 Copynumber: 4.8 Consensus size: 56
79595924 ACATTTTTGA
* * * *
79595934 GTTGGCATCAATATGTGATTCCGAAATATGTGTGCGAGTAAGACCATGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
** * * * *
79595990 GTTGGCATCGATATGTGATTTTGATATGTGTGTGTGAGTAAGACAACATTTAATGC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * * *
79596046 GTTGGCATCGATATGTGATTCCGATATTTATATGCGAGTAAGACCACGCTTAATAT
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* **
79596102 GTTGGCATCGATATGTGATTCCGATATGTGTGTGTGAGTAAGACCACGTTTAATTT
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * *
79596158 GTTGGCATCGATATGTGATTCCAATATGTGTTTACGAGTAAGAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGAC
79596202 ACTCTCTAGG
Statistics
Matches: 181, Mismatches: 31, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
56 181 1.00
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (56 bp):
GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
Found at i:79597898 original size:2 final size:2
Alignment explanation
Indices: 79597891--79597923 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
79597881 CCATATGTTT
79597891 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
79597924 GTACATTTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:79603154 original size:42 final size:41
Alignment explanation
Indices: 79603033--79603154 Score: 118
Period size: 43 Copynumber: 2.9 Consensus size: 41
79603023 TACCATACCA
*** * *
79603033 ATGCCATATCCCAGATATGGTCTTACATGGGATTTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACA-CAAATCTCATATCG
* * *
79603075 ATGCCAATAGCCCAGCTATGGTCTTATACAAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACAAA-TCTCATATCG
* *
79603118 ATGTCATATCCCAGATATTGTCTTACACATAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACA-AATCTCA
79603155 ACTAACCCTA
Statistics
Matches: 64, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
42 31 0.48
43 33 0.52
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.33
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACAAATCTCATATCG
Found at i:79611453 original size:3 final size:3
Alignment explanation
Indices: 79611447--79611482 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
79611437 CTTTTGTAAA
79611447 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
79611483 GAAGCAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:79613336 original size:28 final size:28
Alignment explanation
Indices: 79613304--79613387 Score: 87
Period size: 28 Copynumber: 3.0 Consensus size: 28
79613294 TCTGTATCTG
* *
79613304 GCCCATTAAGCCCAATCATATTCATATA
1 GCCCATTAGGCCCAATCACATTCATATA
* * * *
79613332 GCCCATCAGGCCCAAACCACATTTATATG
1 GCCCATTAGGCCC-AATCACATTCATATA
* *
79613361 GCCCTTTAGGCCCAGTCACATTCATAT
1 GCCCATTAGGCCCAATCACATTCATAT
79613388 TCATGCTCAC
Statistics
Matches: 44, Mismatches: 11, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
28 22 0.50
29 22 0.50
ACGTcount: A:0.30, C:0.32, G:0.12, T:0.26
Consensus pattern (28 bp):
GCCCATTAGGCCCAATCACATTCATATA
Found at i:79624911 original size:2 final size:2
Alignment explanation
Indices: 79624904--79624928 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
79624894 TCATGGCATG
79624904 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
79624929 CATCTCAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:79625542 original size:42 final size:42
Alignment explanation
Indices: 79625430--79625593 Score: 159
Period size: 43 Copynumber: 3.8 Consensus size: 42
79625420 GAAAAGCTAG
* * * * *
79625430 TACAATGCCAATGTCCAAGACGTGGTCTTAAATGTAATCAAA
1 TACAATGCCAATGTCCAAGACATGGTCTTACACGAAATTAAA
* ** *
79625472 TATCAATGCCACTGTCCCGGACAAGGTCTTACACGAAATTAAA
1 TA-CAATGCCAATGTCCAAGACATGGTCTTACACGAAATTAAA
*
79625515 TACAATGCCGATGTCCAAGACATGGTCTTACACGTAAATCTCAAA
1 TACAATGCCAATGTCCAAGACATGGTCTTACACG-AAAT-T-AAA
* * **
79625560 T-CGATGCCAATGTCCCAGATGTGGTCTTACACGA
1 TACAATGCCAATGTCCAAGACATGGTCTTACACGA
79625594 TAACACTTAT
Statistics
Matches: 99, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
42 29 0.29
43 38 0.38
44 28 0.28
45 4 0.04
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.25
Consensus pattern (42 bp):
TACAATGCCAATGTCCAAGACATGGTCTTACACGAAATTAAA
Found at i:79625592 original size:86 final size:85
Alignment explanation
Indices: 79625430--79625593 Score: 204
Period size: 86 Copynumber: 1.9 Consensus size: 85
79625420 GAAAAGCTAG
* * * *
79625430 TACAATGCCAATGTCCAAGACGTGGTCTTAAATGTAATCAAATATCAATGCCACTGTCCCGGACA
1 TACAATGCCAATGTCCAAGACATGGTCTTAAACGTAATCAAATATCAATGCCAATGTCCCAGACA
79625495 AGGTCTTACACGAAATTAAA
66 AGGTCTTACACGAAATTAAA
* * * *
79625515 TACAATGCCGATGTCCAAGACATGGTCTTACACGTAAATCTCAA-ATCGATGCCAATGTCCCAGA
1 TACAATGCCAATGTCCAAGACATGGTCTTAAACGT-AATC-AAATATCAATGCCAATGTCCCAGA
***
79625579 TGTGGTCTTACACGA
64 CAAGGTCTTACACGA
79625594 TAACACTTAT
Statistics
Matches: 66, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
85 31 0.47
86 33 0.50
87 2 0.03
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.25
Consensus pattern (85 bp):
TACAATGCCAATGTCCAAGACATGGTCTTAAACGTAATCAAATATCAATGCCAATGTCCCAGACA
AGGTCTTACACGAAATTAAA
Found at i:79632682 original size:11 final size:11
Alignment explanation
Indices: 79632666--79632695 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
79632656 AACCTCATAG
79632666 TTCATATACAT
1 TTCATATACAT
79632677 TTCATATACAT
1 TTCATATACAT
79632688 TTCATATA
1 TTCATATA
79632696 TTACCAATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.37, C:0.17, G:0.00, T:0.47
Consensus pattern (11 bp):
TTCATATACAT
Found at i:79632973 original size:43 final size:43
Alignment explanation
Indices: 79632907--79633078 Score: 163
Period size: 43 Copynumber: 4.0 Consensus size: 43
79632897 ACCTAGTACA
* * *
79632907 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATTG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATATCG
* * *
79632950 ATGCC-ACTGTCCCAGACAAGGTCTTACACGAAATTAAATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAATCAAATATCG
*** * *
79632992 ATGTTGATGTCCCAGACATGGTCTTACACGTAAATCTCAA-ATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGT-AATC-AAATATCG
* *
79633036 ATGCCAACGTCCCAGACGTGGTCTTACACGATAA-CACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-TAATCAAATATCG
79633079 GAATCCTATG
Statistics
Matches: 102, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
42 28 0.27
43 42 0.41
44 31 0.30
45 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATATCG
Found at i:79633896 original size:138 final size:138
Alignment explanation
Indices: 79633714--79633982 Score: 405
Period size: 138 Copynumber: 1.9 Consensus size: 138
79633704 CATCAATGAA
* * * *
79633714 ATAATTAAAAATCATCATCAAATTCAGAAATTGAGACATAGGCTTGATAGAACACAATGCAATGA
1 ATAATTAAAAATCATCATCAAATTCAGAAATTAAGACATAGGCTTGATAGAACACAAAGAAACGA
*
79633779 TATCAAAAACATAGAAATTATCGAAAACAAATCAAAACACATACCTAAATTATGCTTGACAATGG
66 TATCAAAAACATAAAAATTATCGAAAACAAATCAAAACACATACCTAAATTATGCTTGACAATGG
79633844 CTAATTGC
131 CTAATTGC
* *
79633852 ATAATTCAAAATCATCATCAAATTCA-AAATTTAAGACATGGGCTTGATAGAACACAAAGAAACG
1 ATAATTAAAAATCATCATCAAATTCAGAAA-TTAAGACATAGGCTTGATAGAACACAAAGAAACG
* *** * *
79633916 ATCTCAAAAACATAAAAATTATCGAAAATGGATTAAAACACATACCTAAATTGTGCTTGACAATG
65 ATATCAAAAACATAAAAATTATCGAAAACAAATCAAAACACATACCTAAATTATGCTTGACAATG
79633981 GC
130 GC
79633983 CGAATGCATG
Statistics
Matches: 117, Mismatches: 13, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
137 3 0.03
138 114 0.97
ACGTcount: A:0.48, C:0.16, G:0.12, T:0.25
Consensus pattern (138 bp):
ATAATTAAAAATCATCATCAAATTCAGAAATTAAGACATAGGCTTGATAGAACACAAAGAAACGA
TATCAAAAACATAAAAATTATCGAAAACAAATCAAAACACATACCTAAATTATGCTTGACAATGG
CTAATTGC
Found at i:79636165 original size:44 final size:44
Alignment explanation
Indices: 79636065--79636226 Score: 125
Period size: 44 Copynumber: 3.8 Consensus size: 44
79636055 ACTTAGGGAA
* *
79636065 CTCGCACACTTAGTGCCAAATA-A-ATAGCCGAAGCTGTATCAAT
1 CTCGCACACTAAGTG-CAAATATATATAGCCGAAGCTATATCAAT
** * * * *
79636108 CTCGTGCAGTAAGTGCTAATATATATAGTCGAAGCTATCTCAAT
1 CTCGCACACTAAGTGCAAATATATATAGCCGAAGCTATATCAAT
* * ** * * * *
79636152 CTTGCACACTAAGTGGAAATATATATAGCTAAAACTCTCTCGAT
1 CTCGCACACTAAGTGCAAATATATATAGCCGAAGCTATATCAAT
* *
79636196 TTCGCACACTAAGTGCACATA-AT-TAGCCGAA
1 CTCGCACACTAAGTGCAAATATATATAGCCGAA
79636227 TCATTGTCAA
Statistics
Matches: 91, Mismatches: 26, Indels: 5
0.75 0.21 0.04
Matches are distributed among these distances:
42 11 0.12
43 14 0.15
44 66 0.73
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (44 bp):
CTCGCACACTAAGTGCAAATATATATAGCCGAAGCTATATCAAT
Found at i:79638848 original size:46 final size:44
Alignment explanation
Indices: 79638781--79638946 Score: 183
Period size: 46 Copynumber: 3.6 Consensus size: 44
79638771 GCCCATAAGC
*
79638781 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAAT
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCAT-AAT
* * *
79638827 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-TCAC
1 GAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCATAAT
* *
79638874 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCATCCATAA-T
79638920 GAACTCGGACTCAACTCAACGAGTTCG
1 GAACTCGGACTCAACTCAACGAGTTCG
79638947 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 9, Indels: 16
0.80 0.07 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 54 0.52
47 29 0.28
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCATAAT
Found at i:79638939 original size:93 final size:92
Alignment explanation
Indices: 79638780--79638950 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 92
79638770 CGCCCATAAG
* *
79638780 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATGAATGAACTCGGACTCAACTCA
79638845 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTC-GATGCCTAGTTACATCTCA
* *
79638873 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAT-AAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATGAA-TGAACTCGGACTCAACTC
79638937 AACGAGTTCGATGC
65 AACGAGTTCGATGC
79638951 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
92 7 0.10
93 66 0.90
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATGAATGAACTCGGACTCAACTCA
ACGAGTTCGATGCCTAGTTACATCTCA
Found at i:79641358 original size:15 final size:15
Alignment explanation
Indices: 79641338--79641376 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
79641328 CAAGAAAACC
79641338 GAATAAAGAGATCCA
1 GAATAAAGAGATCCA
79641353 GAATAAAGAGATCCA
1 GAATAAAGAGATCCA
*
79641368 GGATAAAGA
1 GAATAAAGA
79641377 AACCCAAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.54, C:0.10, G:0.23, T:0.13
Consensus pattern (15 bp):
GAATAAAGAGATCCA
Found at i:79644332 original size:46 final size:44
Alignment explanation
Indices: 79644265--79644429 Score: 163
Period size: 46 Copynumber: 3.6 Consensus size: 44
79644255 GCCCATAAGC
* *
79644265 GAACTCGGACTTAACTCAACGAGCTCGGGCGTTCGCATCCATGAAT
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCAT-AAT
* * * *
79644311 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-TCAC
1 GAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCATAAT
* *
79644358 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCATCCATAA-T
79644404 GAACTCGGACTCAACTCAACGAGTTC
1 GAACTCGGACTCAACTCAACGAGTTC
79644430 TGATGCTCAA
Statistics
Matches: 99, Mismatches: 12, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 51 0.52
47 28 0.28
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCATAAT
Found at i:79644423 original size:93 final size:93
Alignment explanation
Indices: 79644264--79644435 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
79644254 CGCCCATAAG
* * *
79644264 CGAACTCGGACTTAACTCAACGAGCTCGGGCGTTCGCATCCATGAATGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATGAATGAACTCAGACTCAACTCA
79644329 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
79644357 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAT-AAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATGAA-TGAACTCAGACTCAACTC
*
79644421 AACGAGTTCTGATGC
65 AACGAGTTCGGATGC
79644436 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATGAATGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:79646567 original size:19 final size:19
Alignment explanation
Indices: 79646543--79646580 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
79646533 AAAAAAAAGG
79646543 TAAAATAATAATAAGTTAA
1 TAAAATAATAATAAGTTAA
79646562 TAAAATAATAATAAGTTAA
1 TAAAATAATAATAAGTTAA
79646581 CGTATGTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (19 bp):
TAAAATAATAATAAGTTAA
Found at i:79648080 original size:14 final size:14
Alignment explanation
Indices: 79648061--79648092 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
79648051 ACTATGACAT
79648061 TGGTATAGGTCAAA
1 TGGTATAGGTCAAA
*
79648075 TGGTATAGGTGAAA
1 TGGTATAGGTCAAA
79648089 TGGT
1 TGGT
79648093 CTTGATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.03, G:0.34, T:0.31
Consensus pattern (14 bp):
TGGTATAGGTCAAA
Found at i:79648747 original size:39 final size:39
Alignment explanation
Indices: 79648702--79648780 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
79648692 CGTGAATGGT
79648702 AGTGAAATTTGTTGAGAATTTATATATTATATGATAGTA
1 AGTGAAATTTGTTGAGAATTTATATATTATATGATAGTA
79648741 AGTGAAATTTGTTGAGAATTTATATATTATATGATAGTA
1 AGTGAAATTTGTTGAGAATTTATATATTATATGATAGTA
79648780 A
1 A
79648781 AAATAAATTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43
Consensus pattern (39 bp):
AGTGAAATTTGTTGAGAATTTATATATTATATGATAGTA
Found at i:79654769 original size:30 final size:30
Alignment explanation
Indices: 79654733--79654863 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
79654723 GACAAGATTG
* * * * *
79654733 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
79654763 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
79654791 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
79654821 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
79654850 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79654864 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:79654824 original size:58 final size:58
Alignment explanation
Indices: 79654733--79654863 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
79654723 GACAAGATTG
* * * * * *
79654733 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
79654791 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
79654850 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79654864 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:79666399 original size:40 final size:39
Alignment explanation
Indices: 79666342--79666526 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
79666332 ATTAAATGAT
* * *
79666342 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
79666382 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
79666422 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
79666462 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
79666502 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
79666527 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:79666478 original size:80 final size:80
Alignment explanation
Indices: 79666341--79666532 Score: 244
Period size: 80 Copynumber: 2.4 Consensus size: 80
79666331 AATTAAATGA
* * ** * *
79666341 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
79666406 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
79666419 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
79666484 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
79666501 TATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCA
79666533 TGTGGTTATA
Statistics
Matches: 98, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
78 1 0.01
80 94 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.24
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:79675303 original size:25 final size:24
Alignment explanation
Indices: 79675275--79675372 Score: 92
Period size: 25 Copynumber: 4.0 Consensus size: 24
79675265 ATGCTCGTAT
*
79675275 GAGCTATGAATCGGTATGCTCTCAC
1 GAGCTA-GAATCGGTAAGCTCTCAC
* *
79675300 GAGCT-GTAAATTGGTAAACTCAT-AC
1 GAGCTAG--AATCGGTAAGCTC-TCAC
79675325 GAGCTGAGAATCGGTAAGCTCTCAC
1 GAGCT-AGAATCGGTAAGCTCTCAC
* *
79675350 GAGTTACAATCGGTAAGCTCTCA
1 GAGCTAGAATCGGTAAGCTCTCA
79675373 TGAGTTGTAA
Statistics
Matches: 60, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
23 1 0.02
24 18 0.30
25 39 0.65
26 1 0.02
27 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (24 bp):
GAGCTAGAATCGGTAAGCTCTCAC
Found at i:79675403 original size:24 final size:24
Alignment explanation
Indices: 79675283--79675403 Score: 102
Period size: 24 Copynumber: 5.0 Consensus size: 24
79675273 ATGAGCTATG
* *
79675283 AATCGGTATGCTCTCACGAGCTGT
1 AATCGGTAAGCTCTCACGAGTTGT
* * * *
79675307 AAATTGGTAAACTCAT-ACGAGCTGAG
1 -AATCGGTAAGCTC-TCACGAGTTG-T
**
79675333 AATCGGTAAGCTCTCACGAGTTAC
1 AATCGGTAAGCTCTCACGAGTTGT
*
79675357 AATCGGTAAGCTCTCATGAGTTGT
1 AATCGGTAAGCTCTCACGAGTTGT
*
79675381 AATTGGTAAGCTCAT-ACGAGTTG
1 AATCGGTAAGCTC-TCACGAGTTG
79675404 AGAATCAGTA
Statistics
Matches: 78, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
24 41 0.53
25 36 0.46
26 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (24 bp):
AATCGGTAAGCTCTCACGAGTTGT
Found at i:79677588 original size:15 final size:16
Alignment explanation
Indices: 79677568--79677603 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
79677558 TGCTTTGGTC
79677568 ATTATTTCAATT-TCA
1 ATTATTTCAATTATCA
*
79677583 ATTATTTCATTTATCA
1 ATTATTTCAATTATCA
79677599 ATTAT
1 ATTAT
79677604 CCCTTTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.58
16 8 0.42
ACGTcount: A:0.33, C:0.11, G:0.00, T:0.56
Consensus pattern (16 bp):
ATTATTTCAATTATCA
Found at i:79680997 original size:40 final size:40
Alignment explanation
Indices: 79680952--79681119 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
79680942 CGGAATACAA
79680952 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
79680992 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
79681032 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
79681072 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
79681112 CCGGATAT
1 CCGGATAT
79681120 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:79687877 original size:30 final size:30
Alignment explanation
Indices: 79687841--79687971 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
79687831 GACAAGATTG
* * * * *
79687841 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
79687871 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
79687899 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
79687929 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
79687958 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79687972 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:79687932 original size:58 final size:58
Alignment explanation
Indices: 79687841--79687971 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
79687831 GACAAGATTG
* * * * * *
79687841 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
79687899 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
79687958 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79687972 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Done.