Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 276 of 444
Found at i:79695815 original size:30 final size:30
Alignment explanation
Indices: 79695779--79695909 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
79695769 GACAAGATTG
* * * * *
79695779 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
79695809 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
79695837 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
79695867 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
79695896 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79695910 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:79695870 original size:58 final size:58
Alignment explanation
Indices: 79695779--79695909 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
79695769 GACAAGATTG
* * * * * *
79695779 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
79695837 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
79695896 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79695910 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:79715511 original size:31 final size:31
Alignment explanation
Indices: 79715468--79715542 Score: 114
Period size: 31 Copynumber: 2.4 Consensus size: 31
79715458 ACGATTACTG
*
79715468 GGCCGAAGCCTTTTCATAAATCAAATCACTA
1 GGCCAAAGCCTTTTCATAAATCAAATCACTA
* * *
79715499 GGCCAAAGCCTTTTCATAAATCATATCATTG
1 GGCCAAAGCCTTTTCATAAATCAAATCACTA
79715530 GGCCAAAGCCTTT
1 GGCCAAAGCCTTT
79715543 ATTATAAACG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (31 bp):
GGCCAAAGCCTTTTCATAAATCAAATCACTA
Found at i:79715626 original size:42 final size:42
Alignment explanation
Indices: 79715566--79715657 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
79715556 TGCCCCATAG
*
79715566 GCCCATTTCAATAACACATGAAATATCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
*
79715608 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
79715650 GCCCATTT
1 GCCCATTT
79715658 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
Found at i:79715814 original size:24 final size:24
Alignment explanation
Indices: 79715778--79715849 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 24
79715768 GCTTTATCAT
* *
79715778 ATAATTGGAGGCATAGCCTCTTTTA
1 ATAACTGGAGGCAAAGCC-CTTTTA
*
79715803 ATAACTGG-GGCAAAGCCCTTTTTG
1 ATAACTGGAGGCAAAGCCC-TTTTA
*
79715827 ATAAACTAG-GGCAAAGCCCTTTT
1 AT-AACTGGAGGCAAAGCCCTTTT
79715850 TGGTAAATTG
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
23 1 0.02
24 18 0.44
25 22 0.54
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (24 bp):
ATAACTGGAGGCAAAGCCCTTTTA
Found at i:79715839 original size:25 final size:25
Alignment explanation
Indices: 79715805--79715899 Score: 127
Period size: 25 Copynumber: 3.8 Consensus size: 25
79715795 CTCTTTTAAT
* *
79715805 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTTGGTA
79715830 AACTAGGGCAAAGCCCTTTTTGGTA
1 AACTAGGGCAAAGCCCTTTTTGGTA
* * * *
79715855 AATTGGGGTAAAGCCCTTTTGGGTA
1 AACTAGGGCAAAGCCCTTTTTGGTA
*
79715880 AACTAGGGCATAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
79715900 AGCACTTCCT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 60 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTTGGTA
Found at i:79716729 original size:27 final size:28
Alignment explanation
Indices: 79716698--79716766 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 28
79716688 TACAGAACAT
*
79716698 AAGGGCATATT-C-GTCATTTTACCATAC
1 AAGGGC-TATTACGGTCACTTTACCATAC
*
79716725 AAGGG-TATTACGGTCACTTTACCCTAC
1 AAGGGCTATTACGGTCACTTTACCATAC
79716752 AAGGGCT-TTACGGTC
1 AAGGGCTATTACGGTC
79716767 TTTTTACCTA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
25 4 0.11
26 1 0.03
27 31 0.84
28 1 0.03
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.30
Consensus pattern (28 bp):
AAGGGCTATTACGGTCACTTTACCATAC
Found at i:79716772 original size:27 final size:27
Alignment explanation
Indices: 79716710--79716774 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
79716700 GGGCATATTC
79716710 GTCATTTTACCATACAAGGGTATTACG
1 GTCATTTTACCATACAAGGGTATTACG
* *
79716737 GTCACTTTACCCTACAAGGGCT-TTACG
1 GTCATTTTACCATACAAGGG-TATTACG
*
79716764 GTCTTTTTACC
1 GTCATTTTACC
79716775 TATTAGGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGTATTACG
Found at i:79716858 original size:27 final size:27
Alignment explanation
Indices: 79716828--79716925 Score: 110
Period size: 27 Copynumber: 3.6 Consensus size: 27
79716818 GTAAATCTAC
79716828 AAACCAAGGGTATTTC-AGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTGT
*
79716855 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
*
79716881 AGAAAGTCAAGGGTATTTCTATAATTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
* *
79716911 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
79716926 TGGTAATTTT
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
26 1 0.02
27 33 0.53
28 7 0.11
29 20 0.32
30 1 0.02
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:79716932 original size:27 final size:27
Alignment explanation
Indices: 79716916--79717044 Score: 179
Period size: 27 Copynumber: 4.8 Consensus size: 27
79716906 TTTGTAAATC
79716916 AGGGGTATTTTGGTAATTTTACAAA-T
1 AGGGGTATTTTGGTAATTTTACAAACT
* * * * *
79716942 TGAGTGTATTTCGATAATTTCACAAACT
1 AG-GGGTATTTTGGTAATTTTACAAACT
* *
79716970 AGTGGTATTTCGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
79716997 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
79717024 AGGGGTATTTTGGTAATTTTA
1 AGGGGTATTTTGGTAATTTTA
79717045 TCCTACAGGG
Statistics
Matches: 89, Mismatches: 12, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 86 0.97
28 2 0.02
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:79717054 original size:27 final size:27
Alignment explanation
Indices: 79716916--79717074 Score: 178
Period size: 27 Copynumber: 5.9 Consensus size: 27
79716906 TTTGTAAATC
*
79716916 AGGGGTATTTTGGTAATTTTACAAA-T
1 AGGGGTATTTCGGTAATTTTACAAACT
* * * *
79716942 TGAGTGTATTTCGATAATTTCACAAACT
1 AG-GGGTATTTCGGTAATTTTACAAACT
*
79716970 AGTGGTATTTCGGTAATTTTACAAACT
1 AGGGGTATTTCGGTAATTTTACAAACT
*
79716997 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTCGGTAATTTTACAAACT
* **
79717024 AGGGGTATTTTGGTAATTTTATCCTAC-
1 AGGGGTATTTCGGTAATTTTA-CAAACT
* *
79717051 AGGGGTATTTCAGTAATTTCACAA
1 AGGGGTATTTCGGTAATTTTACAA
79717075 TCGAAGGTAA
Statistics
Matches: 111, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
26 2 0.02
27 104 0.94
28 5 0.05
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTCGGTAATTTTACAAACT
Found at i:79717058 original size:81 final size:81
Alignment explanation
Indices: 79716916--79717074 Score: 196
Period size: 81 Copynumber: 2.0 Consensus size: 81
79716906 TTTGTAAATC
* * *
79716916 AGGGGTATTTTGGTAATTTTACAAATTGAGTGTATTTCGATAATTTCACAAACTAGTGGTATTTC
1 AGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGATAATTTCACAAACTAGGGGTATTTC
* *
79716981 GGTAATTTTACAAACT
66 AGTAATTTCACAAACT
* * * **
79716997 AGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTATCCTAC-AGGGGTATT
1 AGGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGATAATTTCA-CAAACTAGGGGTATT
79717060 TCAGTAATTTCACAA
64 TCAGTAATTTCACAA
79717075 TCGAAGGTAA
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
81 61 0.92
82 5 0.08
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGATAATTTCACAAACTAGGGGTATTTC
AGTAATTTCACAAACT
Found at i:79717265 original size:27 final size:27
Alignment explanation
Indices: 79717073--79717258 Score: 230
Period size: 27 Copynumber: 6.9 Consensus size: 27
79717063 GTAATTTCAC
* *
79717073 AATCGAAGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
79717100 AA-CTGAGGGTAAAATTGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTGTA
* *
79717127 AATCAAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * *
79717154 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
79717181 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * *
79717208 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
79717235 AATCGAGGGTAAAATGGTAATTCT
1 AATCGAGGGTAAAATGGTAATTCT
79717259 ACAAATCAAG
Statistics
Matches: 141, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 139 0.99
28 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:79717282 original size:81 final size:81
Alignment explanation
Indices: 79717116--79717290 Score: 215
Period size: 81 Copynumber: 2.2 Consensus size: 81
79717106 GGGTAAAATT
* * *
79717116 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTATA
1 GTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTACA
* * *
79717181 AATCGAGGGTAAAACG
66 AATCAAGGGCAAAACA
* * * * *
79717197 GTAATTTTGTAAATCGAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
1 GTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTACA
***
79717262 AATCAAGGGCATTTCA
66 AATCAAGGGCAAAACA
*
79717278 GTAATTTGGTAAA
1 GTAATTTTGTAAA
79717291 CTAAAGTATT
Statistics
Matches: 79, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (81 bp):
GTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTACA
AATCAAGGGCAAAACA
Found at i:79718116 original size:21 final size:22
Alignment explanation
Indices: 79718076--79718116 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
79718066 AGCGAATTAC
* *
79718076 AATATTATTTAACTACATAAAT
1 AATATAATTTAACTAAATAAAT
79718098 AATATAATTT-ACTAAATAA
1 AATATAATTTAACTAAATAA
79718117 TTACATGTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (22 bp):
AATATAATTTAACTAAATAAAT
Found at i:79721077 original size:36 final size:36
Alignment explanation
Indices: 79721030--79721103 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
79721020 AATTAAAGCA
*
79721030 TTCAAAATTAACTCAAAACAGAAACAATGGAGTAAC
1 TTCAAAATTAACTCAAAACAAAAACAATGGAGTAAC
79721066 TTCAAAATTAACTCAAAACAAAAACAATGGAGTAAC
1 TTCAAAATTAACTCAAAACAAAAACAATGGAGTAAC
79721102 TT
1 TT
79721104 ACTTATAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.53, C:0.16, G:0.09, T:0.22
Consensus pattern (36 bp):
TTCAAAATTAACTCAAAACAAAAACAATGGAGTAAC
Found at i:79721596 original size:2 final size:2
Alignment explanation
Indices: 79721585--79721627 Score: 58
Period size: 2 Copynumber: 23.5 Consensus size: 2
79721575 AATTGGCTTT
79721585 TA TA -A TA TA TA TA TA TA TA TA TA TA TA -A TA TA -A TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
79721623 TA TA T
1 TA TA T
79721628 GCATGACTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
1 4 0.11
2 33 0.89
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:79721750 original size:36 final size:36
Alignment explanation
Indices: 79721710--79721782 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
79721700 TGCGCATGAC
* *
79721710 TTAAATGAAGCAAAACATTATATATATGCATTAATA
1 TTAAATGAAGCAAAACAGTATACATATGCATTAATA
*
79721746 TTAAATGAAGCTAAACAGTATACATATGCATTAATA
1 TTAAATGAAGCAAAACAGTATACATATGCATTAATA
79721782 T
1 T
79721783 ATATATATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.33
Consensus pattern (36 bp):
TTAAATGAAGCAAAACAGTATACATATGCATTAATA
Found at i:79721921 original size:43 final size:42
Alignment explanation
Indices: 79721831--79721963 Score: 118
Period size: 43 Copynumber: 3.3 Consensus size: 42
79721821 CTAATTATGA
** **
79721831 TATATATATGCAATTATGCATGACTTAAATGAAGTTAAATGG
1 TATATATATGCAATTATGCATGACTTAAATGAAGCAAAACAG
* *
79721873 AATATATATGC-ATTATGCGCATGACTTAAATGAAGCAAAACAT
1 TATATATATGCAATTAT--GCATGACTTAAATGAAGCAAAACAG
* *
79721916 TATATATATGC-CTTA---AT-A-TTAAATGAAGCTAAACAG
1 TATATATATGCAATTATGCATGACTTAAATGAAGCAAAACAG
*
79721952 TATACATATGCA
1 TATATATATGCA
79721964 TTAATATATA
Statistics
Matches: 77, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
36 26 0.34
37 1 0.01
38 2 0.03
41 5 0.06
42 10 0.13
43 33 0.43
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (42 bp):
TATATATATGCAATTATGCATGACTTAAATGAAGCAAAACAG
Found at i:79721938 original size:36 final size:36
Alignment explanation
Indices: 79721898--79721970 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
79721888 TGCGCATGAC
* * *
79721898 TTAAATGAAGCAAAACATTATATATATGCCTTAATA
1 TTAAATGAAGCAAAACAGTATACATATGCATTAATA
*
79721934 TTAAATGAAGCTAAACAGTATACATATGCATTAATA
1 TTAAATGAAGCAAAACAGTATACATATGCATTAATA
79721970 T
1 T
79721971 ATATATATGC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.47, C:0.11, G:0.10, T:0.33
Consensus pattern (36 bp):
TTAAATGAAGCAAAACAGTATACATATGCATTAATA
Found at i:79722060 original size:184 final size:185
Alignment explanation
Indices: 79721698--79722368 Score: 968
Period size: 184 Copynumber: 3.5 Consensus size: 185
79721688 TATATATATA
79721698 TATGCGCATGACTTAAATGAAGCAAAACATTATATATATGCATTAATATTAAATGAAGCTAAACA
1 TATGCGCATGACTTAAATGAAGCAAAACATTATATATATGCATTAATATTAAATGAAGCTAAACA
*
79721763 GTATACATATGCATTAATATATATATATATATGCTTGGCTTAACTCAAGCTAAACCTGCTAATTA
66 GTATACATATGCA-T--TATATATATATATATGCTTGGCTTAACTCAAGCTAAATCTGCTAATTA
79721828 TGATATATATATGCAATTATGCATGACTTAAATGAAGTTAAATGGAATATATATGCAT
128 TGATATATATATGCAATTATGCATGACTTAAATGAAGTTAAATGGAATATATATGCAT
*
79721886 TATGCGCATGACTTAAATGAAGCAAAACATTATATATATGCCTTAATATTAAATGAAGCTAAACA
1 TATGCGCATGACTTAAATGAAGCAAAACATTATATATATGCATTAATATTAAATGAAGCTAAACA
*
79721951 GTATACATATGCATTA-ATATATATATATGCTTGGCTTAACTCAAGCTAAATCTGCTAATTATGT
66 GTATACATATGCATTATATATATATATATGCTTGGCTTAACTCAAGCTAAATCTGCTAATTATGA
79722015 TATATATATGCAATTATGCATGACTTAAATGAAGTTAAATGGAATATATATGCAT
131 TATATATATGCAATTATGCATGACTTAAATGAAGTTAAATGGAATATATATGCAT
*
79722070 TATGCGCATGACTTAAATGAAGCAAAACATTATATATATGCCTTAATATTAAATGAAGCTAAACA
1 TATGCGCATGACTTAAATGAAGCAAAACATTATATATATGCATTAATATTAAATGAAGCTAAACA
** ***
79722135 GTATACATATGCATTAATATATATATATATATATATATATATATATATGCTTGGCTTAA-CTCAA
66 GTATACATATGCA-T--TATATATATATATAT-GCT-TGGCT-TA-A--C-T--C--AAGCT-AA
* * *
79722199 GCTAAACCTGTTAATTATGGTATATATATGCAATTATGCATGACTTAAATGAAGTTAAATGGAAT
116 ---A--TCTGCTAATTATGATATATATATGCAATTATGCATGACTTAAATGAAGTTAAATGGAAT
*
79722264 AAATATGCAT
176 ATATATGCAT
* *
79722274 TATGCGCATGACTTAAATAAAGCAAAACATTATATATATGCATTAATTTTAAATGAAGCTAAACA
1 TATGCGCATGACTTAAATGAAGCAAAACATTATATATATGCATTAATATTAAATGAAGCTAAACA
*
79722339 GTGTACATATGCATTAATATATATATATAT
66 GTATACATATGCATT-ATATATATATATAT
79722369 ATATATATAT
Statistics
Matches: 445, Mismatches: 16, Indels: 30
0.91 0.03 0.06
Matches are distributed among these distances:
184 179 0.40
185 3 0.01
187 3 0.01
188 89 0.20
189 1 0.00
190 2 0.00
191 2 0.00
192 1 0.00
194 1 0.00
195 1 0.00
197 1 0.00
198 2 0.00
199 4 0.01
201 1 0.00
202 15 0.03
203 1 0.00
204 139 0.31
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.35
Consensus pattern (185 bp):
TATGCGCATGACTTAAATGAAGCAAAACATTATATATATGCATTAATATTAAATGAAGCTAAACA
GTATACATATGCATTATATATATATATATGCTTGGCTTAACTCAAGCTAAATCTGCTAATTATGA
TATATATATGCAATTATGCATGACTTAAATGAAGTTAAATGGAATATATATGCAT
Found at i:79722105 original size:43 final size:42
Alignment explanation
Indices: 79722014--79722110 Score: 115
Period size: 43 Copynumber: 2.3 Consensus size: 42
79722004 GCTAATTATG
** **
79722014 TTATATATATGCAATTATGCATGACTTAAATGAAGTTAAATG
1 TTATATATATGCAATTATGCATGACTTAAATGAAGCAAAACA
**
79722056 GAATATATATGC-ATTATGCGCATGACTTAAATGAAGCAAAACA
1 TTATATATATGCAATTAT--GCATGACTTAAATGAAGCAAAACA
79722099 TTATATATATGC
1 TTATATATATGC
79722111 CTTAATATTA
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
41 5 0.11
42 10 0.22
43 30 0.67
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.34
Consensus pattern (42 bp):
TTATATATATGCAATTATGCATGACTTAAATGAAGCAAAACA
Found at i:79722122 original size:36 final size:36
Alignment explanation
Indices: 79722082--79722154 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
79722072 TGCGCATGAC
* * *
79722082 TTAAATGAAGCAAAACATTATATATATGCCTTAATA
1 TTAAATGAAGCAAAACAGTATACATATGCATTAATA
*
79722118 TTAAATGAAGCTAAACAGTATACATATGCATTAATA
1 TTAAATGAAGCAAAACAGTATACATATGCATTAATA
79722154 T
1 T
79722155 ATATATATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.47, C:0.11, G:0.10, T:0.33
Consensus pattern (36 bp):
TTAAATGAAGCAAAACAGTATACATATGCATTAATA
Found at i:79722158 original size:2 final size:2
Alignment explanation
Indices: 79722151--79722182 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
79722141 ATATGCATTA
79722151 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79722183 GCTTGGCTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79722189 original size:204 final size:204
Alignment explanation
Indices: 79721967--79722592 Score: 1045
Period size: 204 Copynumber: 3.0 Consensus size: 204
79721957 ATATGCATTA
* *
79721967 ATATATATATATGCTTGGCTTAACTCAAGCTAAATCTGCTAATTATGTTATATATATGCAATTAT
1 ATATATATATATGCTTGGCTTAACTCAAGCTAAACCTGCTAATTATGGTATATATATGCAATTAT
79722032 GCATGACTTAAATGAAGTTAAATGGAATATATATGCATTATGCGCATGACTTAAATGAAGCAAAA
66 GCATGACTTAAATGAAGTTAAATGGAATATATATGCATTATGCGCATGACTTAAATGAAGCAAAA
*
79722097 CATTATATATATGCCTTAATATTAAATGAAGCTAAACAGTATACATATGCATTAATATATATATA
131 CATTATATATATGCATTAATATTAAATGAAGCTAAACAGTATACATATGCATTAATATATATATA
79722162 TATATATAT
196 TATATATAT
*
79722171 ATATATATATATGCTTGGCTTAACTCAAGCTAAACCTGTTAATTATGGTATATATATGCAATTAT
1 ATATATATATATGCTTGGCTTAACTCAAGCTAAACCTGCTAATTATGGTATATATATGCAATTAT
* *
79722236 GCATGACTTAAATGAAGTTAAATGGAATAAATATGCATTATGCGCATGACTTAAATAAAGCAAAA
66 GCATGACTTAAATGAAGTTAAATGGAATATATATGCATTATGCGCATGACTTAAATGAAGCAAAA
* *
79722301 CATTATATATATGCATTAATTTTAAATGAAGCTAAACAGTGTACATATGCATTAATATATATATA
131 CATTATATATATGCATTAATATTAAATGAAGCTAAACAGTATACATATGC--------AT-TA-A
79722366 TATATATATATATATATAT
186 TATATATATATATATATAT
*
79722385 ATATATATATATGCTTGGCTTAACTCAAGCTAAACCTGCAAATTATGGTATATATATGCAATTAT
1 ATATATATATATGCTTGGCTTAACTCAAGCTAAACCTGCTAATTATGGTATATATATGCAATTAT
* *
79722450 GCATGACTTAAATGAAGTTAAATGGAATATATATGCATTATGTGCATGACTTAAACGAAGCAAAA
66 GCATGACTTAAATGAAGTTAAATGGAATATATATGCATTATGCGCATGACTTAAATGAAGCAAAA
* *
79722515 CATTATATATATGCATTAATATTAAATGAAGCTGAACAATATACATATGCATTAATATATATATA
131 CATTATATATATGCATTAATATTAAATGAAGCTAAACAGTATACATATGCATTAATATATATATA
79722580 TATATATAT
196 TATATATAT
79722589 ATAT
1 ATAT
79722593 GCTTGACTTA
Statistics
Matches: 394, Mismatches: 18, Indels: 20
0.91 0.04 0.05
Matches are distributed among these distances:
204 196 0.50
205 2 0.01
206 2 0.01
212 2 0.01
213 2 0.01
214 190 0.48
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.36
Consensus pattern (204 bp):
ATATATATATATGCTTGGCTTAACTCAAGCTAAACCTGCTAATTATGGTATATATATGCAATTAT
GCATGACTTAAATGAAGTTAAATGGAATATATATGCATTATGCGCATGACTTAAATGAAGCAAAA
CATTATATATATGCATTAATATTAAATGAAGCTAAACAGTATACATATGCATTAATATATATATA
TATATATAT
Found at i:79722326 original size:36 final size:36
Alignment explanation
Indices: 79722286--79722356 Score: 97
Period size: 36 Copynumber: 2.0 Consensus size: 36
79722276 TGCGCATGAC
* *
79722286 TTAAATAAAGCAAAACATTATATATATGCATTAATT
1 TTAAATAAAGCAAAACAGTATACATATGCATTAATT
* * *
79722322 TTAAATGAAGCTAAACAGTGTACATATGCATTAAT
1 TTAAATAAAGCAAAACAGTATACATATGCATTAAT
79722357 ATATATATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.34
Consensus pattern (36 bp):
TTAAATAAAGCAAAACAGTATACATATGCATTAATT
Found at i:79722362 original size:2 final size:2
Alignment explanation
Indices: 79722355--79722396 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
79722345 ATATGCATTA
79722355 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79722397 GCTTGGCTTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79722420 original size:214 final size:214
Alignment explanation
Indices: 79721967--79722592 Score: 1065
Period size: 214 Copynumber: 3.0 Consensus size: 214
79721957 ATATGCATTA
* *
79721967 ATATATATATATGCTTGGCTTAACTCAAGCTAAATCTGCTAATTATGTTATATATATGCAATTAT
1 ATATATATATATGCTTGGCTTAACTCAAGCTAAACCTGCTAATTATGGTATATATATGCAATTAT
79722032 GCATGACTTAAATGAAGTTAAATGGAATATATATGCATTATGCGCATGACTTAAATGAAGCAAAA
66 GCATGACTTAAATGAAGTTAAATGGAATATATATGCATTATGCGCATGACTTAAATGAAGCAAAA
*
79722097 CATTATATATATGCCTTAATATTAAATGAAGCTAAACAGTATACATATGC--------AT-TA-A
131 CATTATATATATGCATTAATATTAAATGAAGCTAAACAGTATACATATGCATTAATATATATATA
79722152 TATATATATATATATATAT
196 TATATATATATATATATAT
*
79722171 ATATATATATATGCTTGGCTTAACTCAAGCTAAACCTGTTAATTATGGTATATATATGCAATTAT
1 ATATATATATATGCTTGGCTTAACTCAAGCTAAACCTGCTAATTATGGTATATATATGCAATTAT
* *
79722236 GCATGACTTAAATGAAGTTAAATGGAATAAATATGCATTATGCGCATGACTTAAATAAAGCAAAA
66 GCATGACTTAAATGAAGTTAAATGGAATATATATGCATTATGCGCATGACTTAAATGAAGCAAAA
* *
79722301 CATTATATATATGCATTAATTTTAAATGAAGCTAAACAGTGTACATATGCATTAATATATATATA
131 CATTATATATATGCATTAATATTAAATGAAGCTAAACAGTATACATATGCATTAATATATATATA
79722366 TATATATATATATATATAT
196 TATATATATATATATATAT
*
79722385 ATATATATATATGCTTGGCTTAACTCAAGCTAAACCTGCAAATTATGGTATATATATGCAATTAT
1 ATATATATATATGCTTGGCTTAACTCAAGCTAAACCTGCTAATTATGGTATATATATGCAATTAT
* *
79722450 GCATGACTTAAATGAAGTTAAATGGAATATATATGCATTATGTGCATGACTTAAACGAAGCAAAA
66 GCATGACTTAAATGAAGTTAAATGGAATATATATGCATTATGCGCATGACTTAAATGAAGCAAAA
* *
79722515 CATTATATATATGCATTAATATTAAATGAAGCTGAACAATATACATATGCATTAATATATATATA
131 CATTATATATATGCATTAATATTAAATGAAGCTAAACAGTATACATATGCATTAATATATATATA
79722580 TATATATATATAT
196 TATATATATATAT
79722593 GCTTGACTTA
Statistics
Matches: 394, Mismatches: 18, Indels: 10
0.93 0.04 0.02
Matches are distributed among these distances:
204 172 0.44
212 2 0.01
213 2 0.01
214 218 0.55
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.36
Consensus pattern (214 bp):
ATATATATATATGCTTGGCTTAACTCAAGCTAAACCTGCTAATTATGGTATATATATGCAATTAT
GCATGACTTAAATGAAGTTAAATGGAATATATATGCATTATGCGCATGACTTAAATGAAGCAAAA
CATTATATATATGCATTAATATTAAATGAAGCTAAACAGTATACATATGCATTAATATATATATA
TATATATATATATATATAT
Found at i:79722502 original size:43 final size:42
Alignment explanation
Indices: 79722429--79722509 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 42
79722419 CCTGCAAATT
* *
79722429 ATGGTATATATATGCAATTATGCATGACTTAAATGAAGTTAA
1 ATGGAATATATATGCAATTATGCATGACTTAAACGAAGTTAA
79722471 ATGGAATATATATGC-ATTATGTGCATGACTTAAACGAAG
1 ATGGAATATATATGCAATTA--TGCATGACTTAAACGAAG
79722510 CAAAACATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
41 4 0.11
42 14 0.40
43 17 0.49
ACGTcount: A:0.40, C:0.09, G:0.19, T:0.33
Consensus pattern (42 bp):
ATGGAATATATATGCAATTATGCATGACTTAAACGAAGTTAA
Found at i:79722523 original size:43 final size:41
Alignment explanation
Indices: 79722432--79722532 Score: 112
Period size: 43 Copynumber: 2.4 Consensus size: 41
79722422 GCAAATTATG
* ** **
79722432 GTATATATATGCAATTATGCATGACTTAAATGAAGTTAAATG
1 GTATATATATGC-ATTATGCATGACTTAAACGAAGCAAAACA
*
79722474 GAATATATATGCATTATGTGCATGACTTAAACGAAGCAAAACA
1 GTATATATATGCATTA--TGCATGACTTAAACGAAGCAAAACA
*
79722517 TTATATATATGCATTA
1 GTATATATATGCATTA
79722533 ATATTAAATG
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
41 4 0.08
42 11 0.22
43 34 0.69
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.34
Consensus pattern (41 bp):
GTATATATATGCATTATGCATGACTTAAACGAAGCAAAACA
Found at i:79722540 original size:36 final size:36
Alignment explanation
Indices: 79722500--79722572 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
79722490 TGTGCATGAC
* *
79722500 TTAAACGAAGCAAAACATTATATATATGCATTAATA
1 TTAAACGAAGCAAAACAATATACATATGCATTAATA
* **
79722536 TTAAATGAAGCTGAACAATATACATATGCATTAATA
1 TTAAACGAAGCAAAACAATATACATATGCATTAATA
79722572 T
1 T
79722573 ATATATATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.48, C:0.11, G:0.10, T:0.32
Consensus pattern (36 bp):
TTAAACGAAGCAAAACAATATACATATGCATTAATA
Found at i:79722648 original size:45 final size:45
Alignment explanation
Indices: 79722584--79722674 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
79722574 TATATATATA
* **
79722584 TATATATATGCTTGACTTAAATGAAGTTAAACCTGCTAATAATGG
1 TATATATATGCATGACTTAAATGAAACTAAACCTGCTAATAATGG
79722629 TATATATATGCATGACTTAAATGAAACTAAACCTGCTAATAATGG
1 TATATATATGCATGACTTAAATGAAACTAAACCTGCTAATAATGG
79722674 T
1 T
79722675 TAATTTAATT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (45 bp):
TATATATATGCATGACTTAAATGAAACTAAACCTGCTAATAATGG
Found at i:79722773 original size:16 final size:16
Alignment explanation
Indices: 79722752--79722783 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
79722742 ACAAGACAGG
*
79722752 CAGAAACATGGAAACT
1 CAGAAACATAGAAACT
79722768 CAGAAACATAGAAACT
1 CAGAAACATAGAAACT
79722784 TTGATTAGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.19, G:0.16, T:0.12
Consensus pattern (16 bp):
CAGAAACATAGAAACT
Found at i:79723192 original size:21 final size:21
Alignment explanation
Indices: 79723148--79723193 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
79723138 ACGTTGGTTA
* *
79723148 TGGCTTGTGGAACCTTGTTTG
1 TGGCTTGTGGAACCTTGGTCG
79723169 TGGCTTGTGGAA-CTGTGGTCG
1 TGGCTTGTGGAACCT-TGGTCG
79723190 TGGC
1 TGGC
79723194 CTCGTGGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.09, C:0.15, G:0.39, T:0.37
Consensus pattern (21 bp):
TGGCTTGTGGAACCTTGGTCG
Found at i:79726423 original size:41 final size:40
Alignment explanation
Indices: 79726262--79726423 Score: 150
Period size: 41 Copynumber: 3.9 Consensus size: 40
79726252 GCTAATCGAG
79726262 GTCTAAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGT
1 GTCT-AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGT
* * * *
79726303 G-CTAATAACCGAACTTAGTTTCAAAGGGCTTTTTAGAGCCAGT
1 GTCTAAT--CCGAGCTTGGTCTCGAAGGGC-TTTT-GAGCCAGT
* * * * *
79726346 GTCAAAACCG-GACTTCGT-TCCGAAGGGCATTCGAGCCAGT
1 GTCTAATCCGAG-CTTGGTCT-CGAAGGGCTTTTGAGCCAGT
79726386 GGTCTAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCC
1 -GTCTAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCC
79726424 GATGTTAAGA
Statistics
Matches: 95, Mismatches: 16, Indels: 20
0.73 0.12 0.15
Matches are distributed among these distances:
39 3 0.03
40 10 0.11
41 49 0.52
42 21 0.22
43 9 0.09
44 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
GTCTAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGT
Found at i:79743624 original size:17 final size:18
Alignment explanation
Indices: 79743592--79743628 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
79743582 CGTACATGAG
*
79743592 AGAAACAAAAACAAAGAA
1 AGAAACAAAAAAAAAGAA
79743610 AGAAA-AAAAAAAAAGAA
1 AGAAACAAAAAAAAAGAA
79743627 AG
1 AG
79743629 GAAGAAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.81, C:0.05, G:0.14, T:0.00
Consensus pattern (18 bp):
AGAAACAAAAAAAAAGAA
Found at i:79743636 original size:17 final size:18
Alignment explanation
Indices: 79743592--79743628 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
79743582 CGTACATGAG
*
79743592 AGAAACAAAAACAAAGAA
1 AGAAAAAAAAACAAAGAA
79743610 AGAAAAAAAAA-AAAGAA
1 AGAAAAAAAAACAAAGAA
79743627 AG
1 AG
79743629 GAAGAAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.81, C:0.05, G:0.14, T:0.00
Consensus pattern (18 bp):
AGAAAAAAAAACAAAGAA
Found at i:79744920 original size:125 final size:123
Alignment explanation
Indices: 79744685--79744920 Score: 287
Period size: 125 Copynumber: 1.9 Consensus size: 123
79744675 GAATTATGTG
* * * * * *
79744685 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTGAAATGATTATTGATTTATGTGTGCATGAGCAATTGAATAATACCCGG
* ** * ** *
79744750 GCTAAGTCCCGAAGGCGATTATGCTAGTGATATGTTTGTGTTTAAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATATATCCGTGGTTAAGCCTTAGTAACGA
*
79744808 AAATGAAATATGAATGTGAAATGATTATTGATGTATATGTGTGCATGAGCAATTGAATAATATCC
1 AAATGAAATATGAATGTGAAATGATTATTGAT-T-TATGTGTGCATGAGCAATTGAATAATACCC
*
79744873 GGGCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATATCCG-GGTTAAG
64 GGGCTAAGTCCCGAAGACGA-TTATGCTAGAAA-TATATCCGTGGTTAAG
79744921 ACCCGAAGGC
Statistics
Matches: 94, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
123 30 0.32
124 2 0.02
125 57 0.61
126 5 0.05
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.33
Consensus pattern (123 bp):
AAATGAAATATGAATGTGAAATGATTATTGATTTATGTGTGCATGAGCAATTGAATAATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATATATCCGTGGTTAAGCCTTAGTAACGA
Found at i:79744993 original size:40 final size:40
Alignment explanation
Indices: 79744905--79745034 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
79744895 ATGCTGGAAA
* * *
79744905 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGT-G
1 TTATATCCGGGCTAAGACCCAAAGGC-ATTCGTGCAAGTCG
* *
79744944 ACTACATCCGGGCTAAGACCCAAAGGCATTCGTGCAAGTCG
1 -TTATATCCGGGCTAAGACCCAAAGGCATTCGTGCAAGTCG
* * * * *
79744985 TTCTATCCGGGCTAAGACCCGAGGGCATTCGTGCATGTGG
1 TTATATCCGGGCTAAGACCCAAAGGCATTCGTGCAAGTCG
79745025 TTATATCCGG
1 TTATATCCGG
79745035 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.04
40 71 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCAAAGGCATTCGTGCAAGTCG
Found at i:79754238 original size:28 final size:29
Alignment explanation
Indices: 79754206--79754320 Score: 162
Period size: 29 Copynumber: 4.0 Consensus size: 29
79754196 AACATACCTA
*
79754206 TATATGGCCCA-CTAGGCCC-AATCACGTT
1 TATATGGCCCATC-AGGCCCAAATCACATT
* * *
79754234 TATATGGCCCATTAGGCCCAATTCACATA
1 TATATGGCCCATCAGGCCCAAATCACATT
79754263 TATATGGCCCATCAGGCCCAAATCACATT
1 TATATGGCCCATCAGGCCCAAATCACATT
*
79754292 TATATGGCCCATGAGGCCCAAATCACATT
1 TATATGGCCCATCAGGCCCAAATCACATT
79754321 CACAGTCATG
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 17 0.22
29 60 0.78
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.25
Consensus pattern (29 bp):
TATATGGCCCATCAGGCCCAAATCACATT
Found at i:79754273 original size:57 final size:58
Alignment explanation
Indices: 79754204--79754319 Score: 182
Period size: 58 Copynumber: 2.0 Consensus size: 58
79754194 CTAACATACC
* * *
79754204 TATATATGGCCCA-CTAGGCCC-AATCACGTTTATATGGCCCATTAGGCCCAATTCACA
1 TATATATGGCCCATC-AGGCCCAAATCACATTTATATGGCCCATGAGGCCCAAATCACA
79754261 TATATATGGCCCATCAGGCCCAAATCACATTTATATGGCCCATGAGGCCCAAATCACA
1 TATATATGGCCCATCAGGCCCAAATCACATTTATATGGCCCATGAGGCCCAAATCACA
79754319 T
1 T
79754320 TCACAGTCAT
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
57 19 0.35
58 35 0.65
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (58 bp):
TATATATGGCCCATCAGGCCCAAATCACATTTATATGGCCCATGAGGCCCAAATCACA
Found at i:79763488 original size:26 final size:26
Alignment explanation
Indices: 79763391--79763489 Score: 135
Period size: 27 Copynumber: 3.7 Consensus size: 26
79763381 TTAGTGGTTA
*
79763391 TGCCACAATTATCTGATCTGGTGGCTC
1 TGCCAC-ATTATCTGTTCTGGTGGCTC
*
79763418 TGCCACATATATCTATTCTGGTGGCTC
1 TGCCACAT-TATCTGTTCTGGTGGCTC
*
79763445 TGCCACAATTATCTGTTCTGGTGACTC
1 TGCCAC-ATTATCTGTTCTGGTGGCTC
*
79763472 TGTCACATTATCTGTTCT
1 TGCCACATTATCTGTTCT
79763490 AGCAGCCATG
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
26 14 0.22
27 49 0.75
28 2 0.03
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.38
Consensus pattern (26 bp):
TGCCACATTATCTGTTCTGGTGGCTC
Found at i:79769749 original size:14 final size:14
Alignment explanation
Indices: 79769732--79769760 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
79769722 TAATTAAGTT
79769732 TAGTTTAGAAAACA
1 TAGTTTAGAAAACA
79769746 TAGTTTAGAAAACA
1 TAGTTTAGAAAACA
79769760 T
1 T
79769761 CCCTTCAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.07, G:0.14, T:0.31
Consensus pattern (14 bp):
TAGTTTAGAAAACA
Found at i:79785556 original size:4 final size:4
Alignment explanation
Indices: 79785547--79785573 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
79785537 CAAACACAAA
79785547 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
79785574 AACCTTGGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:79785654 original size:22 final size:22
Alignment explanation
Indices: 79785614--79785655 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
79785604 TGGCCACCCA
*
79785614 CCTTGGCCACCAACTCCACCAC
1 CCTTGGCCACCAACACCACCAC
79785636 CCTTGGCCACCTAA-ACCACC
1 CCTTGGCCACC-AACACCACC
79785656 CCAACCACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.24, C:0.52, G:0.10, T:0.14
Consensus pattern (22 bp):
CCTTGGCCACCAACACCACCAC
Found at i:79785808 original size:26 final size:25
Alignment explanation
Indices: 79785779--79785828 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
79785769 TATTTTTTGG
* *
79785779 AGGTTTTTTTTGTTTTTTTGGAAAGA
1 AGGTTGTTTTTG-TTTCTTGGAAAGA
79785805 AGGTTGTTTTTGTTTCTTGGAAAG
1 AGGTTGTTTTTGTTTCTTGGAAAG
79785829 GCTAGTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.18, C:0.02, G:0.26, T:0.54
Consensus pattern (25 bp):
AGGTTGTTTTTGTTTCTTGGAAAGA
Found at i:79786142 original size:3 final size:3
Alignment explanation
Indices: 79786128--79786213 Score: 65
Period size: 3 Copynumber: 28.3 Consensus size: 3
79786118 GAGCTTTGTT
* *
79786128 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
79786172 TT- TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TT- TTA TTA T
1 TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
79786214 ATATGCCCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 7 0.10
3 52 0.76
4 7 0.10
5 2 0.03
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:79786166 original size:27 final size:27
Alignment explanation
Indices: 79786127--79786213 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
79786117 AGAGCTTTGT
79786127 TTTATTATT-TTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTTTTACTATTA
*
79786154 TTTATATTATTATTATTATTT-C--TCA
1 TTTATATTATTATTATT-TTTACTATTA
* * *
79786179 TGTATA-TATTATTATTTATATTATTA
1 TTTATATTATTATTATTTTTACTATTA
79786205 TTT-TATTAT
1 TTTATATTAT
79786214 ATATGCCCTC
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 9 0.19
26 11 0.23
27 13 0.27
28 3 0.06
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (27 bp):
TTTATATTATTATTATTTTTACTATTA
Found at i:79786188 original size:21 final size:18
Alignment explanation
Indices: 79786128--79786217 Score: 92
Period size: 18 Copynumber: 4.7 Consensus size: 18
79786118 GAGCTTTGTT
*
79786128 TTATTATTTTATTATTTTTA
1 TTATTA-TTTA-TATTATTA
*
79786148 CTATTATTTATATTATTA
1 TTATTATTTATATTATTA
*
79786166 TTATTATTTCTCATGTATATA
1 TTATTATTTAT-AT-TAT-TA
79786187 TTATTATTTATATTATTA
1 TTATTATTTATATTATTA
79786205 TT-TTATTATATAT
1 TTATTATT-TATAT
79786218 GCCCTCTCCA
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
17 5 0.08
18 25 0.41
19 9 0.15
20 10 0.16
21 12 0.20
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (18 bp):
TTATTATTTATATTATTA
Found at i:79787737 original size:19 final size:20
Alignment explanation
Indices: 79787697--79787738 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
79787687 GATATATAAT
*
79787697 ATATATAAAAATAATAAGTA
1 ATATATAAAAATAATAACTA
79787717 ATATA-AAAAATAA-AACCTA
1 ATATATAAAAATAATAA-CTA
79787736 ATA
1 ATA
79787739 AATGCTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 2 0.10
19 13 0.65
20 5 0.25
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (20 bp):
ATATATAAAAATAATAACTA
Found at i:79787859 original size:24 final size:23
Alignment explanation
Indices: 79787822--79787867 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
79787812 ATAAATGGTA
79787822 TTTTATTAATAATATAAGTATATT
1 TTTTATTAATAATA-AAGTATATT
*
79787846 TTTTA-TAATAAATAAATTATAT
1 TTTTATTAAT-AATAAAGTATAT
79787868 AAAGAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (23 bp):
TTTTATTAATAATAAAGTATATT
Found at i:79787866 original size:23 final size:23
Alignment explanation
Indices: 79787783--79787867 Score: 63
Period size: 21 Copynumber: 3.8 Consensus size: 23
79787773 GTAAACAATG
*
79787783 TATAATAAATAAA--A-GTTTTT
1 TATAATAAATAAATTATATTTTT
* ** *
79787803 TATAAATATATAAATGGTATTTTA
1 TAT-AATAAATAAATTATATTTTT
*
79787827 T-TAAT-AATATAAGTATATTTTT
1 TATAATAAATA-AATTATATTTTT
79787849 TATAATAAATAAATTATAT
1 TATAATAAATAAATTATAT
79787868 AAAGAAAATA
Statistics
Matches: 48, Mismatches: 10, Indels: 11
0.70 0.14 0.16
Matches are distributed among these distances:
20 3 0.06
21 12 0.25
22 12 0.25
23 12 0.25
24 9 0.19
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.47
Consensus pattern (23 bp):
TATAATAAATAAATTATATTTTT
Found at i:79789772 original size:83 final size:83
Alignment explanation
Indices: 79789548--79789792 Score: 402
Period size: 84 Copynumber: 2.9 Consensus size: 83
79789538 GATCTGCTAC
* * *
79789548 ATTTGAGAACTTTTGAGAGTCAAATCTGCTATGTCCTCGATTT-TTCCCTTGTAAGCACAAGGAT
1 ATTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTT-CCTTGTAAGCACAAGGAT
79789612 GCCAAACCATCTTGAGTCT
65 GCCAAACCATCTTGAGTCT
* *
79789631 ATCTGAGAACATTTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCTTTGTAAGCACAAGGAT
1 ATTTGAGAACA-TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
79789696 GCCAAACCATCTTGAGTCT
65 GCCAAACCATCTTGAGTCT
* *
79789715 GTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAATGATG
1 ATTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATG
79789780 CCAAACCATCTTG
66 CCAAACCATCTTG
79789793 GATCTGCTTC
Statistics
Matches: 151, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
83 74 0.49
84 75 0.50
85 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (83 bp):
ATTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATG
CCAAACCATCTTGAGTCT
Found at i:79795342 original size:40 final size:40
Alignment explanation
Indices: 79795281--79795483 Score: 266
Period size: 40 Copynumber: 5.1 Consensus size: 40
79795271 CGGAATTTAG
* ** *
79795281 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* ** *
79795321 CCGGGTATAGTAACTCGCACAAATGCCTTCGGGT-TTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
79795360 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
*
79795400 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* * * *
79795440 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAAC
79795480 CCGG
1 CCGG
79795484 GTATCATTCA
Statistics
Matches: 143, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
39 35 0.24
40 107 0.75
41 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
Found at i:79795399 original size:79 final size:78
Alignment explanation
Indices: 79795276--79795487 Score: 300
Period size: 79 Copynumber: 2.7 Consensus size: 78
79795266 TTCTTCGGAA
* * *
79795276 TTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGTAACTCGCA
1 TTTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCA
79795340 CAAATGCCTTCGGG
65 CAAATGCCTTCGGG
* *
79795354 TTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCA
1 TTTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCA
79795419 CAAATGCCTTCGGG
65 CAAATGCCTTCGGG
* * * *
79795433 TCTTAACCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
1 T-TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTAT
79795488 CATTCAATTG
Statistics
Matches: 119, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
78 6 0.05
79 67 0.56
80 45 0.38
81 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (78 bp):
TTTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
AAATGCCTTCGGG
Found at i:79805347 original size:18 final size:18
Alignment explanation
Indices: 79805310--79805348 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
79805300 TATATAATAT
*
79805310 ATATAAAAATAATAAGTA
1 ATATAAAAATAATAACTA
79805328 ATATAAAAATAA-AACCTA
1 ATATAAAAATAATAA-CTA
79805346 ATA
1 ATA
79805349 AATGCTATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 2 0.11
18 17 0.89
ACGTcount: A:0.67, C:0.05, G:0.03, T:0.26
Consensus pattern (18 bp):
ATATAAAAATAATAACTA
Found at i:79805442 original size:22 final size:20
Alignment explanation
Indices: 79805410--79805475 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 20
79805400 AATAAAAGTT
*
79805410 TTTTATAAATATATAAATGGTA
1 TTTTAT-AATATATAAAT-ATA
*
79805432 TTTTAGTAATAATATAAGTATA
1 TTTTA-TAAT-ATATAAATATA
*
79805454 TTTTATAATAAATAAATTATA
1 TTTTATAATATATAAA-TATA
79805475 T
1 T
79805476 AAAGAAAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
20 5 0.14
21 9 0.24
22 15 0.41
23 8 0.22
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (20 bp):
TTTTATAATATATAAATATA
Found at i:79805474 original size:21 final size:21
Alignment explanation
Indices: 79805393--79805475 Score: 64
Period size: 21 Copynumber: 3.9 Consensus size: 21
79805383 GTAAACAATG
*
79805393 TATAATAAATAAA--AGTTTTT
1 TATAATAAATAAATTA-TATTT
* **
79805413 TATAAATATATAAATGGTATTT
1 TAT-AATAAATAAATTATATTT
*
79805435 TAGTAAT-AATATAAGTATATTT
1 TA-TAATAAATA-AATTATATTT
79805457 TATAATAAATAAATTATAT
1 TATAATAAATAAATTATAT
79805476 AAAGAAAATA
Statistics
Matches: 49, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
20 3 0.06
21 23 0.47
22 22 0.45
23 1 0.02
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (21 bp):
TATAATAAATAAATTATATTT
Found at i:79806892 original size:20 final size:20
Alignment explanation
Indices: 79806856--79806913 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
79806846 TGCAACGTGA
79806856 TAAATATAAATTAAAAAAAT
1 TAAATATAAATTAAAAAAAT
*
79806876 TAAA-ATAAACTTTAAAAATAT
1 TAAATATAAA--TTAAAAAAAT
*
79806897 ATAAAT-TAATTTAAAAA
1 -TAAATATAAATTAAAAA
79806914 GTAAGTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
19 5 0.16
20 11 0.34
21 9 0.28
22 7 0.22
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (20 bp):
TAAATATAAATTAAAAAAAT
Found at i:79807051 original size:17 final size:15
Alignment explanation
Indices: 79807026--79807076 Score: 59
Period size: 17 Copynumber: 3.2 Consensus size: 15
79807016 ATTATTTGAA
79807026 AAATATAAAAAATAT
1 AAATATAAAAAATAT
79807041 AAATTTATAAAAATATAT
1 AAA--TATAAAAA-ATAT
79807059 ACAAT-TAAAAAATAT
1 A-AATATAAAAAATAT
79807074 AAA
1 AAA
79807077 AAGGCCTGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
14 2 0.06
15 8 0.25
16 6 0.19
17 9 0.28
18 5 0.16
19 2 0.06
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (15 bp):
AAATATAAAAAATAT
Found at i:79807473 original size:25 final size:26
Alignment explanation
Indices: 79807439--79807489 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
79807429 TGATGTGAAA
79807439 ATTTATATTTTTAATTA-ATTTATAT
1 ATTTATATTTTTAATTATATTTATAT
* *
79807464 ATTTTTATTTTTATTTATATTTATAT
1 ATTTATATTTTTAATTATATTTATAT
79807490 TTGCAATGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (26 bp):
ATTTATATTTTTAATTATATTTATAT
Found at i:79813142 original size:19 final size:19
Alignment explanation
Indices: 79813118--79813161 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
79813108 AATCTTTAAG
79813118 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
79813137 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
79813156 GATATG
1 GATATG
79813162 ATATGATATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:79813174 original size:29 final size:30
Alignment explanation
Indices: 79813132--79813189 Score: 100
Period size: 29 Copynumber: 1.9 Consensus size: 30
79813122 TGCAATCTTA
79813132 GATATGATATGCAATCTT-AGATATGATAT
1 GATATGATATGCAATCTTAAGATATGATAT
79813161 GATATGATATGCAATCTTGAAGATATGAT
1 GATATGATATGCAATCTT-AAGATATGAT
79813190 CTTGTAATCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 18 0.67
31 9 0.33
ACGTcount: A:0.38, C:0.07, G:0.19, T:0.36
Consensus pattern (30 bp):
GATATGATATGCAATCTTAAGATATGATAT
Found at i:79818719 original size:7 final size:7
Alignment explanation
Indices: 79818690--79818760 Score: 58
Period size: 8 Copynumber: 9.7 Consensus size: 7
79818680 TCTATTTAAA
79818690 AAAAAAG
1 AAAAAAG
79818697 -AAAAAG
1 AAAAAAG
79818703 --AAAAG
1 AAAAAAG
79818708 AAAAAGAG
1 AAAAA-AG
*
79818716 AAAAAAATAT
1 --AAAAA-AG
79818726 AAAAAGAG
1 AAAAA-AG
79818734 AAAAAAG
1 AAAAAAG
79818741 AAAAAAG
1 AAAAAAG
79818748 AAAAAAAG
1 -AAAAAAG
79818756 AAAAA
1 AAAAA
79818761 TGGAGAGGCC
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
5 5 0.09
6 6 0.11
7 17 0.31
8 20 0.37
10 6 0.11
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (7 bp):
AAAAAAG
Found at i:79818760 original size:6 final size:6
Alignment explanation
Indices: 79818687--79818752 Score: 52
Period size: 6 Copynumber: 11.7 Consensus size: 6
79818677 ACTTCTATTT
* *
79818687 AAAA-A AAAAGA AAAAG- AAAAGA AAAAGA GAAAA-A AATATA AAAAGA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA -AAAAGA AAAAGA AAAAGA
* *
79818733 GAAA-A AAGA-A AAAAGA AAAA
1 AAAAGA AAAAGA AAAAGA AAAA
79818753 AAGAAAAATG
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
5 19 0.39
6 26 0.53
7 4 0.08
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (6 bp):
AAAAGA
Found at i:79820068 original size:205 final size:205
Alignment explanation
Indices: 79819702--79820863 Score: 1827
Period size: 205 Copynumber: 5.7 Consensus size: 205
79819692 GTAGATCTGG
* * *
79819702 CTGAAGCAAGATCTAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATGGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* * * *
79819767 GATTTAGTTTTCACGTGCTTACGCTGAAGCAAATCTAAAATGATTTTGCATCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* *
79819832 AGAACAAATCGAAGTTTGGCATCTCCATTTCGACGGAGAGCAGATACATAGAAGATCTAACCTTC
130 AGAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTC
79819897 AGATGTTTATA
195 AGATGTTTATA
*
79819908 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTTTGCTTACAAGGAACAAATC-ACAGACATAGCT
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGA-AGACATAGCT
* * * * * *
79819972 AATTTAGCTTTCATGTGTTTACGCTAAAACAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
*
79820037 AGAACAAATCGAAGTCTGGCATCTCCATTTCGACAGAGAGCAGATACATAGCAGATCTAACCTTC
130 AGAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTC
*
79820102 GGATGTTTATA
195 AGATGTTTATA
79820113 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* *
79820178 ATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
79820243 GAACAAATTGAAGTCTGGCATCTCCATTTCGATGGAGAGCAGATACATAGCAGATCTAACCTTCA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
79820308 GATGTTTATA
196 GATGTTTATA
* * *
79820318 CTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTACTTACAAGGAACAAATCAAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* *
79820383 ATTTGACTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * *
79820448 GAACAAATTGAAGTCTGGCATCTCCATTTTGACAGAGAGCAGATACATAGCAGATCTAACCTTCA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
79820513 GATGTTTATA
196 GATGTTTATA
* *
79820523 CTGAAGCAGATCTAAGATGGTTTGGCATCCTTGTACTTACAAGGAACAAATCGAAG-CATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * *
79820587 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTTA-A
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * * *
79820651 GAAAAAATCAAAGTCTGGCATCTCCATTTCGATGGAGAGTAGATACATAGCAGATCAAACCTTCA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
79820716 GATG-----A
196 GATGTTTATA
* *
79820721 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGGCATAGCTA
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * * *
79820786 ATTTGGTTTTCGCGTGCTTATGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
*
79820851 GAAAAAATCGAAG
131 GAACAAATCGAAG
79820864 AAACAGATTT
Statistics
Matches: 892, Mismatches: 60, Indels: 14
0.92 0.06 0.01
Matches are distributed among these distances:
198 55 0.06
199 65 0.07
200 13 0.01
203 62 0.07
204 69 0.08
205 620 0.70
206 8 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (205 bp):
CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
GATGTTTATA
Found at i:79821185 original size:261 final size:261
Alignment explanation
Indices: 79820720--79821213 Score: 710
Period size: 261 Copynumber: 1.9 Consensus size: 261
79820710 CCTTCAGATG
* * * *
79820720 ACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGGCATAGCT
1 ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACACAGAT
* * * *
79820785 AATTTGGTTTTCGCGTGCTTATGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAG
66 AATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* *
79820850 AGAAAAAATCGAAGAAACAGATTTGGTGTCTCTGTATTCAGCGGAGAGCAGATCAAAGATATCAA
131 AGAAAAAATCGAAGAAACAGATTTGGCGTCTCTGTATTCAGCAGAGAGCAGATCAAAGATATCAA
79820915 CAGGACAGTCATAAGTTTACAA-GAAGCAGATTAAAGACATAACAGATCTGACCTTCAGATGATT
196 CAGGACAGTCATAAGTTTACAATG-AGCAGATTAAAGACATAACAGATCTGACCTTCAGATGATT
79820979 TT
260 TT
*
79820981 ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTG-TTCACAAGGAGCAAATCGAAGACACA-A
1 ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTT-ACAAGGAACAAATCGAAGACACAGA
* *
79821044 TAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTATTGTC
65 TA-ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTC
* * * *
79821109 AGA-AAACAAATCGAAGAAGCAGATTTGGCGTCTCTGTGTT-TGACAGAGAGCAGATCGAAGATA
129 AGAGAAA-AAATCGAAGAAACAGATTTGGCGTCTCTGTATTCAG-CAGAGAGCAGATCAAAGATA
* * * * *
79821172 TCAACATGACAGTCTTGAGTTTGCAATGAGCAGATTGAAGAC
192 TCAACAGGACAGTCATAAGTTTACAATGAGCAGATTAAAGAC
79821214 CATGATCCGA
Statistics
Matches: 206, Mismatches: 22, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
260 8 0.04
261 197 0.96
262 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (261 bp):
ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACACAGAT
AATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
AGAAAAAATCGAAGAAACAGATTTGGCGTCTCTGTATTCAGCAGAGAGCAGATCAAAGATATCAA
CAGGACAGTCATAAGTTTACAATGAGCAGATTAAAGACATAACAGATCTGACCTTCAGATGATTT
T
Found at i:79821516 original size:19 final size:19
Alignment explanation
Indices: 79821492--79821552 Score: 90
Period size: 19 Copynumber: 3.3 Consensus size: 19
79821482 AATCTTTAAG
79821492 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
79821511 GATATGCTATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
79821530 GATAT--AAACTTAGATAT
1 GATATGCAATCTTAGATAT
79821547 GATATG
1 GATATG
79821553 ATATGATATG
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
17 15 0.39
19 23 0.61
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:79821556 original size:27 final size:30
Alignment explanation
Indices: 79821525--79821580 Score: 82
Period size: 27 Copynumber: 1.9 Consensus size: 30
79821515 TGCTATCTTA
79821525 GATATGATAT-AAA-CTT-AGATATGATAT
1 GATATGATATGAAATCTTAAGATATGATAT
79821552 GATATGATATGAAATCTTGAAGATATGAT
1 GATATGATATGAAATCTT-AAGATATGAT
79821581 CTTGTAATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 10 0.40
28 3 0.12
29 3 0.12
31 9 0.36
ACGTcount: A:0.43, C:0.04, G:0.18, T:0.36
Consensus pattern (30 bp):
GATATGATATGAAATCTTAAGATATGATAT
Found at i:79823361 original size:11 final size:11
Alignment explanation
Indices: 79823323--79823384 Score: 52
Period size: 11 Copynumber: 5.2 Consensus size: 11
79823313 TTAGGTTAGG
79823323 TTCTCTTTCTCTT
1 TTCT-TTTCT-TT
* *
79823336 TTCCTTTCCTT
1 TTCTTTTCTTT
79823347 TTCTTTTCTTT
1 TTCTTTTCTTT
*
79823358 TTCTTTTAGGTTT
1 TTCTTTT--CTTT
79823371 TCTCTTTTCTTT
1 T-TCTTTTCTTT
79823383 TT
1 TT
79823385 AGAGTAGATT
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
11 19 0.47
12 8 0.20
13 7 0.17
14 6 0.15
ACGTcount: A:0.02, C:0.23, G:0.03, T:0.73
Consensus pattern (11 bp):
TTCTTTTCTTT
Found at i:79825709 original size:55 final size:54
Alignment explanation
Indices: 79825620--79825875 Score: 237
Period size: 55 Copynumber: 4.8 Consensus size: 54
79825610 CATTAGGGTT
**
79825620 CAAGGATACCATGTAAGACCATG-CTAAGGTATGGCAATTGGTAAGGTTTCTAAGG
1 CAAGGATACCATGTAAGACCATGTC-AAGACATGGCAATTGGTAA-GTTTCTAAGG
* * * *
79825675 CAAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTT--TCTAAGG
* * * *
79825730 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGG
1 C-AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTC-TAAGG
* *
79825783 CAAGGCTACCATGTGAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA--
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGG
** * *
79825833 -AAGGATACCACATAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAG
79825876 GTACCCATGT
Statistics
Matches: 168, Mismatches: 25, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
49 37 0.22
52 7 0.04
53 40 0.24
54 12 0.07
55 67 0.40
56 5 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGG
Found at i:79825827 original size:108 final size:110
Alignment explanation
Indices: 79825628--79825828 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
79825618 TTCAAGGATA
* * *
79825628 CCATGTAAGACCATGCTAAGGTATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
79825693 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* ** *
79825738 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTGAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
79825800 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
79825829 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.57
109 7 0.09
110 25 0.31
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:79833249 original size:55 final size:54
Alignment explanation
Indices: 79833162--79833416 Score: 269
Period size: 55 Copynumber: 4.8 Consensus size: 54
79833152 ATTAGGGTTT
*
79833162 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
79833217 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
79833272 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* *
79833325 AAGGCTACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
79833374 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
79833417 GTACCCGTGT
Statistics
Matches: 171, Mismatches: 22, Indels: 20
0.80 0.10 0.09
Matches are distributed among these distances:
49 39 0.23
52 7 0.04
53 41 0.24
54 12 0.07
55 68 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:79833368 original size:108 final size:110
Alignment explanation
Indices: 79833169--79833369 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
79833159 TTTAAGGATA
*
79833169 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
79833234 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* **
79833279 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
79833341 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
79833370 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.56
109 7 0.08
110 27 0.32
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:79833633 original size:16 final size:16
Alignment explanation
Indices: 79833612--79833642 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79833602 ATAAATTTGA
79833612 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
79833628 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
79833643 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:79835221 original size:18 final size:18
Alignment explanation
Indices: 79835194--79835234 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
79835184 TTAAATGATT
*
79835194 TTTTATTAAGTAATAATA
1 TTTTAATAAGTAATAATA
79835212 TTTTAATAAGTAATAATA
1 TTTTAATAAGTAATAATA
79835230 TTTTA
1 TTTTA
79835235 TTAATTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (18 bp):
TTTTAATAAGTAATAATA
Found at i:79838061 original size:45 final size:45
Alignment explanation
Indices: 79837708--79838062 Score: 484
Period size: 45 Copynumber: 8.0 Consensus size: 45
79837698 GCACTTTCAT
*** * * *
79837708 ATGATGTCATAATGTCTTTCATCTATAGTCTTACTCATTTATATC
1 ATGATGTCATAGCATCTTTCAGCTATGGTCTTACTCATTTTTATC
* * ** *
79837753 ATGGTGCCATATTATCTTTCAGCTATGGTCTTACTCA-TTTTAAC
1 ATGATGTCATAGCATCTTTCAGCTATGGTCTTACTCATTTTTATC
79837797 ATGATGTCATAGCATCTTTCAGCTATGGTCTTACTCA-TTTTATC
1 ATGATGTCATAGCATCTTTCAGCTATGGTCTTACTCATTTTTATC
79837841 ATGATGTCATAGCATCTTTCAGCTATGGTCTTACTC-TTTTTATC
1 ATGATGTCATAGCATCTTTCAGCTATGGTCTTACTCATTTTTATC
*
79837885 ATGATGTCATAGCATCTTTCAGCTATAGTCTTACTCATTTTTATC
1 ATGATGTCATAGCATCTTTCAGCTATGGTCTTACTCATTTTTATC
* * *
79837930 ATGATGTCATATCATCTTTCAGCTATGGTATTACTCACTTTTATC
1 ATGATGTCATAGCATCTTTCAGCTATGGTCTTACTCATTTTTATC
* * * *
79837975 ATGATGCCATAACATCTTTCAACTATGGTCTTACTTATTTTTATC
1 ATGATGTCATAGCATCTTTCAGCTATGGTCTTACTCATTTTTATC
* *
79838020 ATGATGCCATAGCATCTTTTAGCTA-GGTTCTTACTCATTTTTA
1 ATGATGTCATAGCATCTTTCAGCTATGG-TCTTACTCATTTTTA
79838063 GGCGTATAGC
Statistics
Matches: 279, Mismatches: 28, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
44 124 0.44
45 155 0.56
ACGTcount: A:0.24, C:0.20, G:0.12, T:0.45
Consensus pattern (45 bp):
ATGATGTCATAGCATCTTTCAGCTATGGTCTTACTCATTTTTATC
Found at i:79840622 original size:16 final size:18
Alignment explanation
Indices: 79840588--79840628 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
79840578 AACGAAATTA
*
79840588 TAATTTGATTGAGAAAAT
1 TAATTTAATTGAGAAAAT
79840606 T-ATTTAATTGA-AAAAT
1 TAATTTAATTGAGAAAAT
79840622 TAATTTA
1 TAATTTA
79840629 TTTAAATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 6 0.29
17 14 0.67
18 1 0.05
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (18 bp):
TAATTTAATTGAGAAAAT
Found at i:79844771 original size:17 final size:19
Alignment explanation
Indices: 79844729--79844772 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
79844719 ATGAAATTTT
*
79844729 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
79844748 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
79844766 AA-TATTA
1 AATTATTA
79844773 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:79846592 original size:28 final size:28
Alignment explanation
Indices: 79846560--79846628 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
79846550 GCGTAGATCA
79846560 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
79846588 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
79846616 CGATA-TACCCCTA
1 CGAAATTACCCCTA
79846629 GAGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:79850641 original size:48 final size:48
Alignment explanation
Indices: 79850566--79850999 Score: 640
Period size: 48 Copynumber: 9.0 Consensus size: 48
79850556 CAAGATAAAT
* * * *
79850566 AAATATATGTGTGATATGTATATGTGGTAAAGCCAAAGGGCCAATGTG
1 AAATATATGTGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * *
79850614 AAATATGTATGAGATATGTATACGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
79850662 AAATATATGTGTA-ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTG-AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
79850710 AAATATATGTGTA-ATATGTATATGTGGTAAAGCCGAATGGCTAATCTG
1 AAATATATGTG-AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
79850758 AAAAATATGTGTA-ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTG-AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * *
79850806 AAATATATGTGTGATATGTATATGTGGTAAAGCTGAATGGCTAATATG
1 AAATATATGTGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
79850854 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * *
79850902 AAATATATGTGTGATATGTATATGTGATAAAGCCGAATGGCGAATGTG
1 AAATATATGTGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * * *
79850950 AAATATGTATGAGATATGAAGATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
79850998 AA
1 AA
79851000 TGTTGTAACA
Statistics
Matches: 356, Mismatches: 28, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
48 355 1.00
49 1 0.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
AAATATATGTGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:79851152 original size:37 final size:37
Alignment explanation
Indices: 79851044--79851152 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
79851034 GGAAATATAT
*
79851044 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
79851081 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
79851118 TCCGGGTGAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
79851153 CGTCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:79855441 original size:225 final size:226
Alignment explanation
Indices: 79855044--79855505 Score: 782
Period size: 225 Copynumber: 2.0 Consensus size: 226
79855034 AGCTTTACTG
*
79855044 ATGATTTGGAGCATTTGGGTCAGCACCTAACATATTTAAATACTGAAAAATTAGTAGCTAATCTC
1 ATGATTTGGAGCATTTGGGTCAACACCTAACATATTTAAATACTGAAAAATTAGTAGCTAATCTC
** * *
79855109 AATAAAAGTCCTTCATTTAATCAATCCATAATATTTTTCCGAGATCTATGTTGAAACAACAAACT
66 AATAAAAACCCTTCATTTAATCAATCCATAATATTTTTCCAAGATCTATGTCGAAACAACAAACT
* *
79855174 AGTTTGCGATTACCCTCACTTACGCTTCCCAAATTGTCAAATCTGATTTGCCGAATACTCAAGAA
131 AGTTTACGATTACCCTCACTTACGCTTCCCAAATTGTCAAATCTGATTTGCCAAATACTCAAGAA
*
79855239 TAATTTTTCCTCATTAAAACATGTTTCAAGT
196 TAATTTTTCCTAATTAAAACATGTTTCAAGT
* *
79855270 ATGATTTGGAGCATTTGGGTCAACACTTAACATATTTAAATA-TGAAAAATTAGTAGCTAATCTT
1 ATGATTTGGAGCATTTGGGTCAACACCTAACATATTTAAATACTGAAAAATTAGTAGCTAATCTC
*
79855334 AATAAAAACCCTTCATTTAATTAATCCATAATATTTTTCCAAGATCTATGTCGAAACAACAAACT
66 AATAAAAACCCTTCATTTAATCAATCCATAATATTTTTCCAAGATCTATGTCGAAACAACAAACT
* *
79855399 AGTTTACGATTACCCTCACTTACGCTTCCCAAATTTTCAAATCTGATTTGCTAAATACTCAAGAA
131 AGTTTACGATTACCCTCACTTACGCTTCCCAAATTGTCAAATCTGATTTGCCAAATACTCAAGAA
79855464 TAATTTTTCCTAATTAAAACATGTTTCAAGT
196 TAATTTTTCCTAATTAAAACATGTTTCAAGT
* *
79855495 CTGATTAGGAG
1 ATGATTTGGAG
79855506 GGATTCAAGA
Statistics
Matches: 221, Mismatches: 15, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
225 181 0.82
226 40 0.18
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35
Consensus pattern (226 bp):
ATGATTTGGAGCATTTGGGTCAACACCTAACATATTTAAATACTGAAAAATTAGTAGCTAATCTC
AATAAAAACCCTTCATTTAATCAATCCATAATATTTTTCCAAGATCTATGTCGAAACAACAAACT
AGTTTACGATTACCCTCACTTACGCTTCCCAAATTGTCAAATCTGATTTGCCAAATACTCAAGAA
TAATTTTTCCTAATTAAAACATGTTTCAAGT
Found at i:79857887 original size:12 final size:12
Alignment explanation
Indices: 79857870--79857894 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79857860 ATAAATAAAA
79857870 ATATATTTTTAT
1 ATATATTTTTAT
79857882 ATATATTTTTAT
1 ATATATTTTTAT
79857894 A
1 A
79857895 AATTTTAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
ATATATTTTTAT
Found at i:79859306 original size:31 final size:31
Alignment explanation
Indices: 79859268--79859337 Score: 140
Period size: 31 Copynumber: 2.3 Consensus size: 31
79859258 TTCAATTGTT
79859268 ACAATTTGGTCATTAATATTATTGATTTATA
1 ACAATTTGGTCATTAATATTATTGATTTATA
79859299 ACAATTTGGTCATTAATATTATTGATTTATA
1 ACAATTTGGTCATTAATATTATTGATTTATA
79859330 ACAATTTG
1 ACAATTTG
79859338 ATCACTATGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.36, C:0.07, G:0.10, T:0.47
Consensus pattern (31 bp):
ACAATTTGGTCATTAATATTATTGATTTATA
Found at i:79867210 original size:30 final size:29
Alignment explanation
Indices: 79867169--79867235 Score: 80
Period size: 30 Copynumber: 2.3 Consensus size: 29
79867159 TAGGGTGTTC
*
79867169 TAGGCACTATGTGCCGATAATTACAGTTTT
1 TAGGCACTATGTACCGAT-ATTACAGTTTT
* * *
79867199 TAGGTACTATGTACCGATGTTACAGTTTC
1 TAGGCACTATGTACCGATATTACAGTTTT
*
79867228 AAGGCACT
1 TAGGCACT
79867236 CTATACTAGT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
29 15 0.48
30 16 0.52
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (29 bp):
TAGGCACTATGTACCGATATTACAGTTTT
Found at i:79874224 original size:49 final size:49
Alignment explanation
Indices: 79874152--79874546 Score: 711
Period size: 49 Copynumber: 8.1 Consensus size: 49
79874142 GCATAATAAT
*
79874152 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATAC
79874201 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATAC
*
79874250 ATATGTGATAAGGCCTAATGGCCGACCTGATGAATGTGAAACTGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATAC
*
79874299 ATATGTGATAAGGCCTAATGGCCGAC-TGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATAC
*
79874347 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATAC
*
79874396 ATATGTGATAAGGCCTAATGGCTGACGTGATGAATGTGAAACTGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATAC
*
79874445 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATAC
* *
79874494 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATAC
79874543 ATAT
1 ATAT
79874547 ATGTGGTAAA
Statistics
Matches: 337, Mismatches: 8, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
48 47 0.14
49 290 0.86
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.28
Consensus pattern (49 bp):
ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATAC
Found at i:79874484 original size:195 final size:196
Alignment explanation
Indices: 79874152--79874546 Score: 738
Period size: 195 Copynumber: 2.0 Consensus size: 196
79874142 GCATAATAAT
79874152 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCT
79874217 AATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCTAATGGCCGACCTGATG
66 AATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCTAATGGCCGACCTGATG
79874282 AATGTGAAACTGTATACATATGTGATAAGGCCTAATGGCCGAC-TGATGAATGTGAAAATGTATA
131 AATGTGAAACTGTATACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATA
79874346 C
196 C
79874347 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCT
* *
79874412 AATGGCTGACGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCTAATGGCCGACGTGATG
66 AATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCTAATGGCCGACCTGATG
* *
79874477 AATGTGAAACTGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATA
131 AATGTGAAACTGTATACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATA
*
79874542 T
196 C
79874543 ATAT
1 ATAT
79874547 ATGTGGTAAA
Statistics
Matches: 194, Mismatches: 5, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
195 170 0.88
196 24 0.12
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.28
Consensus pattern (196 bp):
ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCT
AATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCTAATGGCCGACCTGATG
AATGTGAAACTGTATACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATA
C
Found at i:79874670 original size:37 final size:36
Alignment explanation
Indices: 79874615--79874701 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
79874605 AACTTAGAAA
79874615 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
79874653 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
79874690 TATGTCCGGGTA
1 TATGTCCGGGTA
79874702 AGACTTCCTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:79877112 original size:60 final size:60
Alignment explanation
Indices: 79877019--79877138 Score: 215
Period size: 60 Copynumber: 2.0 Consensus size: 60
79877009 CTAGAACATT
79877019 CATGACATTATGAAAGGATCTAAAATGATTCAAATGGTCAACTAGGTTTGT-AGAGCAATC
1 CATGACATTATGAAAGGATCTAAAATGATTCAAATGGTCAACTAGGTTTGTGA-AGCAATC
*
79877079 CATGACGTTATGAAAGGATCTAAAATGATTCAAATGGTCAACTAGGTTTGTGAAGCAATC
1 CATGACATTATGAAAGGATCTAAAATGATTCAAATGGTCAACTAGGTTTGTGAAGCAATC
79877139 ATAGATCTCT
Statistics
Matches: 58, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
60 57 0.98
61 1 0.02
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (60 bp):
CATGACATTATGAAAGGATCTAAAATGATTCAAATGGTCAACTAGGTTTGTGAAGCAATC
Found at i:79879464 original size:22 final size:22
Alignment explanation
Indices: 79879436--79879478 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
79879426 TGCTGTTATG
79879436 GACTTAGGTCCGAATATGTATA
1 GACTTAGGTCCGAATATGTATA
*
79879458 GACTTAGGTCCGAATTTGTAT
1 GACTTAGGTCCGAATATGTAT
79879479 CTGACTGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (22 bp):
GACTTAGGTCCGAATATGTATA
Found at i:79883259 original size:27 final size:26
Alignment explanation
Indices: 79883216--79883273 Score: 80
Period size: 27 Copynumber: 2.2 Consensus size: 26
79883206 GATTGTTAAG
79883216 ACCCCGACTTGTAAAATTACCGAAAT
1 ACCCCGACTTGTAAAATTACCGAAAT
* * *
79883242 ACCCCTGATTTGTGAAATTATCGAAAT
1 ACCCC-GACTTGTAAAATTACCGAAAT
79883269 ACCCC
1 ACCCC
79883274 CGGGTTATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 5 0.18
27 23 0.82
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (26 bp):
ACCCCGACTTGTAAAATTACCGAAAT
Found at i:79883286 original size:27 final size:27
Alignment explanation
Indices: 79883217--79883286 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 27
79883207 ATTGTTAAGA
* *
79883217 CCCCGACTTGTAAAATTACCGAAATAC
1 CCCCGAGTTATAAAATTACCGAAATAC
* * * * *
79883244 CCCTGATTTGTGAAATTATCGAAATAC
1 CCCCGAGTTATAAAATTACCGAAATAC
*
79883271 CCCCGGGTTATAAAAT
1 CCCCGAGTTATAAAAT
79883287 GACCCTAATA
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.27
Consensus pattern (27 bp):
CCCCGAGTTATAAAATTACCGAAATAC
Found at i:79883311 original size:27 final size:27
Alignment explanation
Indices: 79883281--79883423 Score: 205
Period size: 27 Copynumber: 5.3 Consensus size: 27
79883271 CCCCGGGTTA
* *
79883281 TAAAATGACCCTAATACCTCTGTAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
*
79883308 TAAAATGACCGTAATACCCCTATAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
* *
79883335 TAAAATGACCATAATGCCCCTGTAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
*
79883362 TAAAATGATCGTAATACCCCTGTAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
* *
79883389 TAAAATGATCGTAATACCCCTGTATGG
1 TAAAATGACCGTAATACCCCTGTAGGG
*
79883416 TAACATGA
1 TAAAATGA
79883424 TGATTATGCG
Statistics
Matches: 105, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 105 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
TAAAATGACCGTAATACCCCTGTAGGG
Found at i:79883641 original size:26 final size:26
Alignment explanation
Indices: 79883560--79883642 Score: 105
Period size: 27 Copynumber: 3.2 Consensus size: 26
79883550 ATGGAGGAAG
* *
79883560 TACTGTACTGGTGACTATGTCACATT
1 TACTGTACTGGTGGCTATGCCACATT
* *
79883586 CACTGTTACTGGTGGCTATGCCACAAT
1 TACTG-TACTGGTGGCTATGCCACATT
79883613 TACTGATACTGGTGGCT-TGCCACATT
1 TACTG-TACTGGTGGCTATGCCACATT
79883639 TACT
1 TACT
79883643 ATTTCTGGCA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
26 16 0.33
27 33 0.67
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
TACTGTACTGGTGGCTATGCCACATT
Found at i:79883650 original size:26 final size:27
Alignment explanation
Indices: 79883565--79883659 Score: 95
Period size: 27 Copynumber: 3.6 Consensus size: 27
79883555 GGAAGTACTG
* * * *
79883565 TACTGGTGACTATGTCACATTCACTGT
1 TACTGGTGGCTATGCCACATTTACTAT
*
79883592 TACTGGTGGCTATGCCACAATTACTGA-
1 TACTGGTGGCTATGCCACATTTACT-AT
79883619 TACTGGTGGCT-TGCCACATTTACTAT
1 TACTGGTGGCTATGCCACATTTACTAT
* **
79883645 TTCTGGCAGCTATGC
1 TACTGGTGGCTATGC
79883660 TGCATTATTA
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
25 1 0.02
26 20 0.36
27 35 0.62
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACATTTACTAT
Found at i:79883868 original size:33 final size:33
Alignment explanation
Indices: 79883831--79883928 Score: 126
Period size: 33 Copynumber: 3.0 Consensus size: 33
79883821 AGGCCCACAC
*
79883831 TATTACTGTATAGGGCTAAAGCCTAGACTGTTT
1 TATTACTGTATAGGGCTAAAGCCCAGACTGTTT
* *
79883864 TATTACTGTATAGGGCTAAGGCCCAGACTGTACT
1 TATTACTGTATAGGGCTAAAGCCCAGACTGT-TT
* * *
79883898 GATT-CTGGATAGGGCTCAAGCCCAGACTGTT
1 TATTACTGTATAGGGCTAAAGCCCAGACTGTT
79883929 ACTGCATGCA
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
33 52 0.93
34 4 0.07
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (33 bp):
TATTACTGTATAGGGCTAAAGCCCAGACTGTTT
Found at i:79885787 original size:24 final size:24
Alignment explanation
Indices: 79885747--79885812 Score: 105
Period size: 24 Copynumber: 2.8 Consensus size: 24
79885737 TTTCCGATAT
* * *
79885747 GGTTCTTTGTGAGCTTCCCGACAA
1 GGTTCTTTTTGAACTTCCAGACAA
79885771 GGTTCTTTTTGAACTTCCAGACAA
1 GGTTCTTTTTGAACTTCCAGACAA
79885795 GGTTCTTTTTGAACTTCC
1 GGTTCTTTTTGAACTTCC
79885813 TGATTATGGC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.18, C:0.23, G:0.20, T:0.39
Consensus pattern (24 bp):
GGTTCTTTTTGAACTTCCAGACAA
Found at i:79887933 original size:36 final size:35
Alignment explanation
Indices: 79887865--79887933 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
79887855 ATTATAATCG
* *
79887865 CTGTCACATGGTATGAAAACGTACCCACATATTTA
1 CTGTCACATGGCATGAAAACATACCCACATATTTA
* *
79887900 CTGTCACATGGCATGAATAATATACCCATATATT
1 CTGTCACATGGCATGAA-AACATACCCACATATT
79887934 CTCTTTTACA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 16 0.55
36 13 0.45
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (35 bp):
CTGTCACATGGCATGAAAACATACCCACATATTTA
Found at i:79892296 original size:40 final size:39
Alignment explanation
Indices: 79892194--79892345 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
79892184 AAATTGAATG
* * * * *
79892194 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-CATT
* **
79892234 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGC-ATT
*
79892274 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-CATT
* * *
79892314 CTATCTGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
79892346 ACATGCTTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
39 3 0.03
40 87 0.94
41 3 0.03
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGCATT
Found at i:79894597 original size:54 final size:54
Alignment explanation
Indices: 79894429--79894575 Score: 147
Period size: 54 Copynumber: 2.8 Consensus size: 54
79894419 CATGTGTCTG
* ** * * * * * *
79894429 ACCGTGTAACTCTTTGGCTTGAGTCTCACAGGCGTGTGCT-AGGCTGTGTGCCAA
1 ACCGTGTAACTCTCTAACTTAAGTCACACAGGTGTGTG-TGAGGCCGTGTGGCTA
* * *
79894483 AGCATGTAACTCTCTAACTTAAGTCACACAGGTGTGTGTGAGGCCGTGTGTCTA
1 ACCGTGTAACTCTCTAACTTAAGTCACACAGGTGTGTGTGAGGCCGTGTGGCTA
*
79894537 ACCGTGTAACTTTCTAACTTAAGTCACAC-GGT-TGTGTGA
1 ACCGTGTAACTCTCTAACTTAAGTCACACAGGTGTGTGTGA
79894576 CAGTCTGTGT
Statistics
Matches: 78, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
52 7 0.09
53 4 0.05
54 67 0.86
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.31
Consensus pattern (54 bp):
ACCGTGTAACTCTCTAACTTAAGTCACACAGGTGTGTGTGAGGCCGTGTGGCTA
Found at i:79894802 original size:15 final size:16
Alignment explanation
Indices: 79894784--79894813 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
79894774 TATTTGATGT
79894784 TTTGTTAT-TGTACAA
1 TTTGTTATATGTACAA
79894799 TTTGTTATATGTACA
1 TTTGTTATATGTACA
79894814 TATATATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.27, C:0.07, G:0.13, T:0.53
Consensus pattern (16 bp):
TTTGTTATATGTACAA
Found at i:79909238 original size:43 final size:42
Alignment explanation
Indices: 79909154--79909307 Score: 118
Period size: 42 Copynumber: 3.6 Consensus size: 42
79909144 CAATGCCATG
* ** * *
79909154 TATGGTCTTACATGGGATCTTATATCGATGCCA-ATTGCCCAGC
1 TATGGTCTTACACGAAATCTCATAACGATGCCAGA-T-CCCAGC
* * *
79909197 TATGGTCTTACACG-ATTCTCATATATCGATGCTAGGTCCCAGAC
1 TATGGTCTTACACGAAATCTCATA-A-CGATGCCAGATCCCAG-C
* * * *
79909241 T-TGGTCTTATAGGAAATCTCATAACGATGCCATATCCCAGA
1 TATGGTCTTACACGAAATCTCATAACGATGCCAGATCCCAGC
79909282 TATGGTCTTACACGTAAA-CTCATAAC
1 TATGGTCTTACACG-AAATCTCATAAC
79909308 CCTAATGTCA
Statistics
Matches: 88, Mismatches: 16, Indels: 15
0.74 0.13 0.13
Matches are distributed among these distances:
41 1 0.01
42 37 0.42
43 32 0.36
44 18 0.20
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (42 bp):
TATGGTCTTACACGAAATCTCATAACGATGCCAGATCCCAGC
Found at i:79917707 original size:55 final size:53
Alignment explanation
Indices: 79917582--79917770 Score: 229
Period size: 55 Copynumber: 3.5 Consensus size: 53
79917572 AATTTACCAT
* * *
79917582 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTTATCAA
* * *
79917635 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGTAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTTATCAA
* * * *
79917690 TGCCATGTCTTTACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTTATCAA
79917744 TGCCATGCCTTCG-CATGGTCTTACATG
1 TGCCATGCCTT-GACATGGTCTTACATG
79917771 ATATCCTTAT
Statistics
Matches: 116, Mismatches: 15, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
52 2 0.02
53 34 0.29
54 35 0.30
55 43 0.37
56 2 0.02
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.37
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTTATCAA
Found at i:79917761 original size:54 final size:53
Alignment explanation
Indices: 79917582--79917778 Score: 236
Period size: 54 Copynumber: 3.6 Consensus size: 53
79917572 AATTTACCAT
* * * *
79917582 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCATCAA
1 TGCCATGCCTTG-CATGGTCTTACATGATATCCTTGCCTTATAGAACTTATCAA
** *
79917635 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCTTATAGTAACTTATCAA
1 TGCCATGCCTT-GCATGGTCTTACATGATATCC-TTGCCTTATAG-AACTTATCAA
* * *
79917690 TGCCATGTCTTTACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATG-CCTTGCATGGTCTTACATGATATCCTTGCCTTATAGAACTTATCAA
79917744 TGCCATGCCTTCGCATGGTCTTACATGATATCCTT
1 TGCCATGCCTT-GCATGGTCTTACATGATATCCTT
79917779 ATCTTACCAA
Statistics
Matches: 123, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
52 2 0.02
53 36 0.29
54 40 0.33
55 40 0.33
56 5 0.04
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (53 bp):
TGCCATGCCTTGCATGGTCTTACATGATATCCTTGCCTTATAGAACTTATCAA
Found at i:79917811 original size:47 final size:47
Alignment explanation
Indices: 79917757--79917856 Score: 155
Period size: 47 Copynumber: 2.1 Consensus size: 47
79917747 CATGCCTTCG
*
79917757 CATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* * * *
79917804 GATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCGAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
79917851 CATGGT
1 CATGGT
79917857 ATCCTTGTCT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:79934805 original size:27 final size:27
Alignment explanation
Indices: 79934775--79934863 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 27
79934765 TAAAACAGTC
* *
79934775 ATTTTACCCTACAAGGGTATTTTGATA
1 ATTTTACACTACAAGGGTATTTAGATA
*
79934802 ATTTTACACTACAAGGGTATTTAGGTA
1 ATTTTACACTACAAGGGTATTTAGATA
* ** *
79934829 ATTTTACA-AACTGGGGGTATTTCGATA
1 ATTTTACACTAC-AAGGGTATTTAGATA
79934856 ATTTTACA
1 ATTTTACA
79934864 AATCGGGGGC
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
26 2 0.04
27 51 0.96
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.39
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTAGATA
Found at i:79934864 original size:27 final size:27
Alignment explanation
Indices: 79934789--79934892 Score: 113
Period size: 27 Copynumber: 3.9 Consensus size: 27
79934779 TACCCTACAA
* * **
79934789 GGGTATTTTGATAATTTTACACTAC-AA
1 GGGTATTTCGATAATTTTACA-AACTGG
* *
79934816 GGGTATTTAGGTAATTTTACAAACTGG
1 GGGTATTTCGATAATTTTACAAACTGG
79934843 GGGTATTTCGATAATTTTACAAA-TCGG
1 GGGTATTTCGATAATTTTACAAACT-GG
*
79934870 GGGCATTTCGATAATTTTACAAA
1 GGGTATTTCGATAATTTTACAAA
79934893 TCGAGGTCTT
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
26 3 0.04
27 64 0.96
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAAACTGG
Found at i:79943103 original size:51 final size:52
Alignment explanation
Indices: 79943026--79943159 Score: 184
Period size: 52 Copynumber: 2.6 Consensus size: 52
79943016 CGGATACCCG
* * * *
79943026 GTGGCCTGCATATAGTACCACCCTTGTAGTCAAAGCTA-CCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTAGTCAAAGCTATCCTTATTCACAAA
* *
79943077 GTGGCCTTCACATAGTACCACACTTGT-GACCAAAGCTATCTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTAG-TCAAAGCTATCCTTATTCACAAA
79943129 GTGGCCTTCACATAGTACCACACTTG-AGTCA
1 GTGGCCTTCACATAGTACCACACTTGTAGTCA
79943160 CTAGTGACAT
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
50 1 0.01
51 34 0.47
52 38 0.52
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (52 bp):
GTGGCCTTCACATAGTACCACACTTGTAGTCAAAGCTATCCTTATTCACAAA
Found at i:79943729 original size:21 final size:22
Alignment explanation
Indices: 79943699--79943740 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
79943689 TAGTAAAAGT
79943699 CATTTCTCTAACCA-TAAACATG
1 CATTTCTCT-ACCATTAAACATG
79943721 CATTT-TCTACCATTAAACAT
1 CATTTCTCTACCATTAAACAT
79943741 AAAAAAACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.21
21 10 0.53
22 5 0.26
ACGTcount: A:0.36, C:0.26, G:0.02, T:0.36
Consensus pattern (22 bp):
CATTTCTCTACCATTAAACATG
Found at i:79947812 original size:66 final size:68
Alignment explanation
Indices: 79947734--79947920 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
79947724 TAGTACCACT
*
79947734 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
79947796 CACG
65 CACG
79947800 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
79947865 ATCACG
63 ATCACG
79947871 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
79947921 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:79947845 original size:71 final size:71
Alignment explanation
Indices: 79947757--79947920 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
79947747 CGATTTGTCT
79947757 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
79947822 CTTTCA
66 CTTTCA
79947828 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
79947893 CTTTCA
66 CTTTCA
79947899 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
79947921 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:79947958 original size:71 final size:70
Alignment explanation
Indices: 79947757--79947954 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
79947747 CGATTTGTCT
* * * *
79947757 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
79947822 CTTTCA
65 CTTTCA
* * * *
79947828 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
79947893 CTTTCA
65 CTTTCA
* *
79947899 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
79947955 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:79955423 original size:71 final size:71
Alignment explanation
Indices: 79955337--79955500 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
79955327 CGATTTGTCT
79955337 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
79955402 CTTTCA
66 CTTTCA
79955408 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
79955473 CTTTCA
66 CTTTCA
79955479 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
79955501 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:79955538 original size:71 final size:70
Alignment explanation
Indices: 79955337--79955534 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
79955327 CGATTTGTCT
* * * *
79955337 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
79955402 CTTTCA
65 CTTTCA
* * * *
79955408 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
79955473 CTTTCA
65 CTTTCA
* *
79955479 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
79955535 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:79963389 original size:22 final size:22
Alignment explanation
Indices: 79963347--79963390 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
79963337 AGGATGTTAC
* *
79963347 AAACCAAATCATAAAATAAATA
1 AAACCAAATCAGAAAAAAAATA
79963369 AAACCAAAT-AGAAACAAAAATA
1 AAACCAAATCAGAAA-AAAAATA
79963391 GTAATCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.70, C:0.14, G:0.02, T:0.14
Consensus pattern (22 bp):
AAACCAAATCAGAAAAAAAATA
Found at i:79964926 original size:8 final size:8
Alignment explanation
Indices: 79964913--79964947 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
79964903 TTGTGTATTC
79964913 TTTTTATA
1 TTTTTATA
79964921 TTTTTATA
1 TTTTTATA
79964929 TTTTTAT-
1 TTTTTATA
79964936 TTTTATATA
1 TTTT-TATA
79964945 TTT
1 TTT
79964948 ATTTTATTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 4 0.16
8 18 0.72
9 3 0.12
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTTATA
Found at i:79964938 original size:14 final size:14
Alignment explanation
Indices: 79964914--79964952 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
79964904 TGTGTATTCT
79964914 TTTTATATTTTTATA
1 TTTT-TATTTTTATA
79964929 TTTTTATTTTTATA
1 TTTTTATTTTTATA
*
79964943 TATTTATTTT
1 TTTTTATTTT
79964953 ATTGTATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 19 0.83
15 4 0.17
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTTATTTTTATA
Found at i:79965042 original size:3 final size:3
Alignment explanation
Indices: 79965034--79965092 Score: 73
Period size: 3 Copynumber: 19.3 Consensus size: 3
79965024 AAATTGTTAT
* * *
79965034 TTA TTA TTA TTA TTTA TTA TTT TTA TTA TTA GTA TTA TTA TTG TTA
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
79965080 TTA TTA CTA TTA T
1 TTA TTA TTA TTA T
79965093 GGTCATTTTT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
3 44 0.94
4 3 0.06
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:79975228 original size:45 final size:44
Alignment explanation
Indices: 79975119--79975236 Score: 121
Period size: 44 Copynumber: 2.7 Consensus size: 44
79975109 CTACCATGGT
* * *
79975119 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAT
1 GAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAC
* * * * * * *
79975163 TAACCTTATCTT-TCTGAAGTTGTAGTGGAGCAGGTTGAAGATAGC
1 GAATCTTAT-TTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACA-C
79975208 GAATCTTATTTCCCTGAAGTTGCAGTGGA
1 GAATCTTATTTCCCTGAAGTTGCAGTGGA
79975237 ATAGATTTAA
Statistics
Matches: 57, Mismatches: 14, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
44 34 0.60
45 23 0.40
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (44 bp):
GAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAC
Done.