Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 278 of 444
Found at i:80242230 original size:57 final size:54
Alignment explanation
Indices: 80242158--80242343 Score: 154
Period size: 49 Copynumber: 3.5 Consensus size: 54
80242148 TTAAAAATTT
* ** *
80242158 TTATCATATATTTTTATTATATATATTATTTATTCTGTTATATTTATATTTTATTA
1 TTATTATATATTTTTA-T-TATATATTATTTATTCTACTATATTTATATATTATTA
* *
80242214 TATGTTATATATTTTTATTATATATTATTTATTTTACTATATTT-T-TA-TATTA
1 T-TATTATATATTTTTATTATATATTATTTATTCTACTATATTTATATATTATTA
* ** * *
80242266 TTATTAT-TATTATT-TTATATATTCCTTATTATAATATATTTCAT-TA-TATT-
1 TTATTATATATTTTTATTATATATTATTTATTCTACTATATTT-ATATATTATTA
* *
80242316 TTATCTACATATTTTTATTACATATTAT
1 TTAT-TATATATTTTTATTATATATTAT
80242344 ATTTATTATA
Statistics
Matches: 107, Mismatches: 17, Indels: 15
0.77 0.12 0.11
Matches are distributed among these distances:
49 23 0.21
50 10 0.09
51 14 0.13
52 12 0.11
53 9 0.08
54 1 0.01
55 23 0.21
56 2 0.02
57 13 0.12
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.63
Consensus pattern (54 bp):
TTATTATATATTTTTATTATATATTATTTATTCTACTATATTTATATATTATTA
Found at i:80242236 original size:30 final size:30
Alignment explanation
Indices: 80242201--80242462 Score: 111
Period size: 30 Copynumber: 7.9 Consensus size: 30
80242191 TCTGTTATAT
*
80242201 TTATATTTTATTATATGTTATATATTTTTA
1 TTATATTTTATTATATTTTATATATTTTTA
*
80242231 TTATATATTATT-TATTTTACTATATTTTTA
1 TTATATTTTATTATATTTTA-TATATTTTTA
80242261 -TATTATTATTATTATTATTTTATATATTCCTTATTA
1 TTA-TATT-TTATTA-TATTTTATATA-T--TT-TTA
*
80242297 TAATATATTTCATTATATTTTATCTACATATTTTTA
1 T--TATATTTTATTATATTTTA--T--ATATTTTTA
* * *
80242333 TTACATATTATATT-TATTATATATTATTCATTA
1 TT--ATATTTTATTATATTTTATA-TATT-TTTA
* * *
80242366 TAATATCTTTCTT-TCTTTTATATATATTATATCA
1 TTATAT-TTTATTATATTTTATATAT-TT-T-T-A
* *
80242400 TATACATTTTATTATATATATTTTTATATTATTTA
1 T-TATATTTTA-T-TATAT-TTTATATATT-TTTA
**
80242435 TTATATGAT-TTATATTATTATATATTTT
1 TTATATTTTATTATATT-TTATATATTTT
80242463 ATTTGTAAAT
Statistics
Matches: 177, Mismatches: 23, Indels: 64
0.67 0.09 0.24
Matches are distributed among these distances:
29 8 0.05
30 27 0.15
31 26 0.15
32 22 0.12
33 14 0.08
34 11 0.06
35 14 0.08
36 24 0.14
37 11 0.06
38 14 0.08
39 3 0.02
40 3 0.02
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (30 bp):
TTATATTTTATTATATTTTATATATTTTTA
Found at i:80242328 original size:40 final size:39
Alignment explanation
Indices: 80242266--80242359 Score: 93
Period size: 40 Copynumber: 2.4 Consensus size: 39
80242256 TTTTATATTA
* *
80242266 TTATTAT-TATTATTTTATATATTCCTTATT-ATAATATAT
1 TTATTATATATTA-TCTACATATT-CTTATTAATAATATAT
* * *
80242305 TTCATTATATTTTATCTACATATTTTTATTACATATTATAT
1 TT-ATTATATATTATCTACATATTCTTATTA-ATAATATAT
80242346 TTATTATATATTAT
1 TTATTATATATTAT
80242360 TCATTATAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
39 7 0.16
40 24 0.53
41 14 0.31
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (39 bp):
TTATTATATATTATCTACATATTCTTATTAATAATATAT
Found at i:80242435 original size:21 final size:21
Alignment explanation
Indices: 80242408--80242459 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
80242398 CATATACATT
*
80242408 TTATTATATATAT-TTTTATA
1 TTATTATATATATGATTTATA
80242428 TTATT-TATTATATGATTTATA
1 TTATTATA-TATATGATTTATA
80242449 TTATTATATAT
1 TTATTATATAT
80242460 TTTATTTGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 2 0.07
20 10 0.36
21 14 0.50
22 2 0.07
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
TTATTATATATATGATTTATA
Found at i:80242453 original size:24 final size:24
Alignment explanation
Indices: 80242407--80242460 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
80242397 TCATATACAT
* *
80242407 TTTATTATATATATTTTTATATTA
1 TTTATTATATAGATTTATATATTA
80242431 TTTATTATAT-GATTTATATTATTA
1 TTTATTATATAGATTTATA-TATTA
*
80242455 TATATT
1 TTTATT
80242461 TTATTTGTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 6 0.23
24 20 0.77
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (24 bp):
TTTATTATATAGATTTATATATTA
Found at i:80244243 original size:18 final size:19
Alignment explanation
Indices: 80244205--80244247 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
80244195 AAAAATGATT
**
80244205 TAAAATGTTCATAAAGTTC
1 TAAAATGTTCATAAAAATC
80244224 TAAAATGTTC-TAAAAATC
1 TAAAATGTTCATAAAAATC
80244242 TAAAAT
1 TAAAAT
80244248 TTGAAACAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.49, C:0.09, G:0.07, T:0.35
Consensus pattern (19 bp):
TAAAATGTTCATAAAAATC
Found at i:80246117 original size:8 final size:8
Alignment explanation
Indices: 80246106--80246137 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
80246096 AAATAATTAT
80246106 AAAAAATA
1 AAAAAATA
80246114 AAAAAATA
1 AAAAAATA
80246122 AAAAAATA
1 AAAAAATA
80246130 AAAAAATA
1 AAAAAATA
80246138 TTTAATATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAAATA
Found at i:80249652 original size:43 final size:43
Alignment explanation
Indices: 80249598--80249758 Score: 241
Period size: 43 Copynumber: 3.7 Consensus size: 43
80249588 GGTATTATAG
80249598 TCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGTAT
1 TCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGTAT
* * * *
80249641 TCGGGCCTTCGTGCCTAGTAAGCTTCGTGCTGGTGATGTGTAT
1 TCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGTAT
* *
80249684 TCGGGCCTTCGTACCTAGCAGGCTTCGTGCCGGTGATGTGTAT
1 TCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGTAT
* * *
80249727 TCGGACCTTCGTGCCTAGCAGGCGTAATGCCG
1 TCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCG
80249759 ATGAAATGAT
Statistics
Matches: 105, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 105 1.00
ACGTcount: A:0.12, C:0.25, G:0.33, T:0.30
Consensus pattern (43 bp):
TCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGTAT
Found at i:80250146 original size:45 final size:45
Alignment explanation
Indices: 80250079--80250186 Score: 132
Period size: 45 Copynumber: 2.4 Consensus size: 45
80250069 TTGACTTGAT
* * * *
80250079 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCTGGTGAGCT-A
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAACTGA
**
80250123 CTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAACTGA
1 -TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAACTGA
80250169 TA-TCGGGCC-TCGAGCCTA
1 TATTCGGGCCTTCGAGCCTA
80250187 ACAGGTGAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
43 9 0.16
44 7 0.12
45 39 0.70
46 1 0.02
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAACTGA
Found at i:80254620 original size:97 final size:95
Alignment explanation
Indices: 80254332--80254624 Score: 411
Period size: 90 Copynumber: 3.1 Consensus size: 95
80254322 ATTAAAAATT
* * *
80254332 AATTAATATAATAGTACAGGTACAGCAACATAAATTAAACAAAAAAAAGTATGTTAAATTACA-T
1 AATTAATATAATAGTACAAGTACA-CAGCATAAATTAAACAAAAAAAAGTATGTTAAACTACAGT
80254396 TTCAAACTTTAAAGTTAGTTAATTGAAGCCTA
65 TT-AAACTTTAAAGTTAGTTAATTGAAGCCTA
* * *
80254428 AATTAATATAATAGTACAA-T----AGCATAAATTAAACAAAAAAAAGTTTGTTAAGCTACCGTT
1 AATTAATATAATAGTACAAGTACACAGCATAAATTAAACAAAAAAAAGTATGTTAAACTACAGTT
*
80254488 TAAAATTTAAAGTTAGTTAATTGAAGCCTA
66 TAAACTTTAAAGTTAGTTAATTGAAGCCTA
* *
80254518 AATTAATATAATAGTACAAGTACAACAGGATAAATTAGAA-AAAAAAACAGTATGTTAAACTATA
1 AATTAATATAATAGTACAAGTAC-ACAGCATAAATTA-AACAAAAAAA-AGTATGTTAAACTACA
80254582 GTTTAAACTTTAAAGTTAGTTAATTGAAGCCTA
63 GTTTAAACTTTAAAGTTAGTTAATTGAAGCCTA
80254615 AATTAATATA
1 AATTAATATA
80254625 CAACAGCATA
Statistics
Matches: 175, Mismatches: 13, Indels: 17
0.85 0.06 0.08
Matches are distributed among these distances:
90 79 0.45
91 4 0.02
95 1 0.01
96 35 0.20
97 56 0.32
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (95 bp):
AATTAATATAATAGTACAAGTACACAGCATAAATTAAACAAAAAAAAGTATGTTAAACTACAGTT
TAAACTTTAAAGTTAGTTAATTGAAGCCTA
Found at i:80254845 original size:17 final size:17
Alignment explanation
Indices: 80254823--80254874 Score: 86
Period size: 17 Copynumber: 3.1 Consensus size: 17
80254813 ATTTTTTCTC
*
80254823 TATTAATATTACGTTAT
1 TATTAATATTACATTAT
*
80254840 TATTAATATTATATTAT
1 TATTAATATTACATTAT
80254857 TATTAATATTACATTAT
1 TATTAATATTACATTAT
80254874 T
1 T
80254875 GCTTTGGGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (17 bp):
TATTAATATTACATTAT
Found at i:80256689 original size:269 final size:269
Alignment explanation
Indices: 80256210--80256750 Score: 803
Period size: 269 Copynumber: 2.0 Consensus size: 269
80256200 GTAGGTTGTC
* * * **
80256210 TTATATTGTGATTAATCAAGTCCTTGACCGGTTAGGTTATTAGACAAACATTGCTAGGTAGCCGT
1 TTATATTGTGACTAATCAAGTCCTTGACCGATTAGGTCATTAGACAAACATTGCTAAATAGCCGT
* * * * *
80256275 TGAAACACCCCGATACTCAACTCGATCGTCGGGTACGAGCTACAGGGATAAACGTTCATTTTCAG
66 TGAAACACCCCGATACTCAACCCAATCATCAGGTACGAGCTACAGGGATAAACATTCATTTTCAG
80256340 AGCAACTATGATAAAATTATATTCGATTTAAAATCATTGAACATTCAAATATAAGTAAAACATGT
131 AGCAACTATGATAAAATTATATTCGATTTAAAATCATTGAACATTCAAATATAAGTAAAACATGT
* **
80256405 GTATAATACAATACGTAATCTTTTTTAGGTTTTATATGACCTTACGAAAGATCTAATGCTAACCC
196 GTATAATACAATACGTAATCATTTTTAGGTTTTATACAACCTTACGAAAGATCTAATGCTAACCC
80256470 GAGGTCGAA
261 GAGGTCGAA
*
80256479 TTATATTGTGACTAATCAAGTCCTTGACCGATTAGGTCGTTAGACAAACATTGCTAAATAGCCGT
1 TTATATTGTGACTAATCAAGTCCTTGACCGATTAGGTCATTAGACAAACATTGCTAAATAGCCGT
** ** * * * *
80256544 TGAAACACCTTGATGTTCGACCCAATCATCAGGTCCGAGCTATAGGGATCAACATTCATTTTCAG
66 TGAAACACCCCGATACTCAACCCAATCATCAGGTACGAGCTACAGGGATAAACATTCATTTTCAG
* * * * **
80256609 AGCAACTATGATCAAATTCTATTTGATTTAAAATCGTTGAACATTCAAATATAAGTAAAATGTGT
131 AGCAACTATGATAAAATTATATTCGATTTAAAATCATTGAACATTCAAATATAAGTAAAACATGT
* * *
80256674 GTATAATGCAATACGTAATCATTTTTAGGTTTTATACAACCTTACGAAAGCTCTAATGCTAACCT
196 GTATAATACAATACGTAATCATTTTTAGGTTTTATACAACCTTACGAAAGATCTAATGCTAACCC
80256739 GAGGTCGAA
261 GAGGTCGAA
80256748 TTA
1 TTA
80256751 AGACCAAATT
Statistics
Matches: 241, Mismatches: 31, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
269 241 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (269 bp):
TTATATTGTGACTAATCAAGTCCTTGACCGATTAGGTCATTAGACAAACATTGCTAAATAGCCGT
TGAAACACCCCGATACTCAACCCAATCATCAGGTACGAGCTACAGGGATAAACATTCATTTTCAG
AGCAACTATGATAAAATTATATTCGATTTAAAATCATTGAACATTCAAATATAAGTAAAACATGT
GTATAATACAATACGTAATCATTTTTAGGTTTTATACAACCTTACGAAAGATCTAATGCTAACCC
GAGGTCGAA
Found at i:80258408 original size:28 final size:28
Alignment explanation
Indices: 80258362--80258430 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
80258352 TTTAAAACTC
*
80258362 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
80258389 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
80258417 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
80258431 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:80263547 original size:29 final size:29
Alignment explanation
Indices: 80263515--80263649 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
80263505 ATACCCTCCG
** * *
80263515 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
80263544 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
80263573 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
80263602 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
80263631 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
80263650 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:80263582 original size:58 final size:58
Alignment explanation
Indices: 80263461--80263650 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
80263451 TACTCGATTT
* * * *** *
80263461 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
80263519 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
80263577 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
80263635 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
80263651 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:80265830 original size:28 final size:28
Alignment explanation
Indices: 80265784--80265852 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
80265774 TTTAAAACTC
*
80265784 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
80265811 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
80265839 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
80265853 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:80270249 original size:42 final size:44
Alignment explanation
Indices: 80270145--80270282 Score: 117
Period size: 42 Copynumber: 3.2 Consensus size: 44
80270135 TGAGATATCG
* * * * **
80270145 TGTAAGA-CCGTGTCTGGGACACAGGCCTCGAT-TTGAGATTTATG
1 TGTAAGATCCATGTCTGGGACAGAGACATCGATATTGA-A-TTACA
* * * *
80270189 TGTAAGA-CCATGTTTGGGACATAGGCATCG-TATCTG-ATTTCA
1 TGTAAGATCCATGTCTGGGACAGAGACATCGATAT-TGAATTACA
80270231 TGTAAGATCC-TGTCTGGGACAGAGACATCGATATTGAATTACA
1 TGTAAGATCCATGTCTGGGACAGAGACATCGATATTGAATTACA
80270274 TGTAAGATC
1 TGTAAGATC
80270283 ACGTCCAAGA
Statistics
Matches: 78, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
42 28 0.36
43 21 0.27
44 27 0.35
45 2 0.03
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (44 bp):
TGTAAGATCCATGTCTGGGACAGAGACATCGATATTGAATTACA
Found at i:80274404 original size:20 final size:20
Alignment explanation
Indices: 80274381--80274447 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 20
80274371 TGCACTTCAA
*
80274381 TGCCTCTATTTTCACTTTGG
1 TGCCTCTATTTACACTTTGG
*
80274401 TGCCTCTGA-TTGCACATTT-G
1 TGCCTCT-ATTTACAC-TTTGG
* * *
80274421 TGCCTCTGTCTACACTTCGG
1 TGCCTCTATTTACACTTTGG
80274441 TGCCTCT
1 TGCCTCT
80274448 GTTACTCATC
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
19 2 0.05
20 32 0.84
21 4 0.11
ACGTcount: A:0.10, C:0.30, G:0.18, T:0.42
Consensus pattern (20 bp):
TGCCTCTATTTACACTTTGG
Found at i:80274927 original size:13 final size:13
Alignment explanation
Indices: 80274901--80274974 Score: 67
Period size: 13 Copynumber: 5.6 Consensus size: 13
80274891 AAATATTTAG
*
80274901 ATGAAATTGTTAT
1 ATGAAATGGTTAT
*
80274914 ATGAAATGGATAT
1 ATGAAATGGTTAT
*
80274927 ATGAAATGCTTAT
1 ATGAAATGGTTAT
* * *
80274940 TTGGAAATAGATAT
1 AT-GAAATGGTTAT
**
80274954 ATGAACCGGTTAT
1 ATGAAATGGTTAT
80274967 ATGAAATG
1 ATGAAATG
80274975 TTTAAACGAA
Statistics
Matches: 45, Mismatches: 15, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
13 36 0.80
14 9 0.20
ACGTcount: A:0.41, C:0.04, G:0.20, T:0.35
Consensus pattern (13 bp):
ATGAAATGGTTAT
Found at i:80285203 original size:29 final size:27
Alignment explanation
Indices: 80285161--80285220 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 27
80285151 AATCTCATTT
*
80285161 ATTTTACATTTTAGTCCCTCAAAATA-TCA
1 ATTTTACAATTTAG--CC-CAAAATACTCA
80285190 ATTTTACAATTTAGCCCAAAATACTCA
1 ATTTTACAATTTAGCCCAAAATACTCA
80285217 ATTT
1 ATTT
80285221 CATCAAAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 7 0.24
27 9 0.31
29 13 0.45
ACGTcount: A:0.37, C:0.20, G:0.03, T:0.40
Consensus pattern (27 bp):
ATTTTACAATTTAGCCCAAAATACTCA
Found at i:80288404 original size:43 final size:43
Alignment explanation
Indices: 80288323--80288432 Score: 121
Period size: 43 Copynumber: 2.6 Consensus size: 43
80288313 GACTTCCGAG
* * * **
80288323 GTGTGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGAT
1 GTGTGATTACGTGTAAGACCATATCTGAGACAAAGGCATCGAT
* *
80288366 GTGTGATTACGTGTAAGACCCTATCTGAGACAAAGGCATCGGT
1 GTGTGATTACGTGTAAGACCATATCTGAGACAAAGGCATCGAT
* * * *
80288409 TTGTGATAACATGTAAGACTATAT
1 GTGTGATTACGTGTAAGACCATAT
80288433 TTGGGATATG
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.31
Consensus pattern (43 bp):
GTGTGATTACGTGTAAGACCATATCTGAGACAAAGGCATCGAT
Found at i:80291243 original size:43 final size:42
Alignment explanation
Indices: 80291195--80291340 Score: 157
Period size: 43 Copynumber: 3.4 Consensus size: 42
80291185 ATCAGATATA
* * * * *
80291195 GTCTTACATGTTATCACCTATCGATGCCACTATCCCAGACAGG
1 GTCTTACACGTAATCA-CTATCGATGCCAATGTCCCAGACATG
** * *
80291238 GTCTTACACAAAATCGATTAACGATGCCAATGTCCCAGACATG
1 GTCTTACACGTAATC-ACTATCGATGCCAATGTCCCAGACATG
* *
80291281 GTCTTACACGTAATCACAATACAATGCCAATGTCCCAGACATG
1 GTCTTACACGTAATCACTAT-CGATGCCAATGTCCCAGACATG
*
80291324 GTCTTACATGTAATCAC
1 GTCTTACACGTAATCAC
80291341 ATCTCAATAA
Statistics
Matches: 85, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
42 2 0.02
43 82 0.96
44 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (42 bp):
GTCTTACACGTAATCACTATCGATGCCAATGTCCCAGACATG
Found at i:80295284 original size:42 final size:42
Alignment explanation
Indices: 80295163--80295315 Score: 191
Period size: 42 Copynumber: 3.6 Consensus size: 42
80295153 TAACATACCA
* * *
80295163 ATGCCATATCCCAGTTATGGTCTTACATG-GGATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATGAAG-TCTCATATCG
* * * *
80295205 ATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
* *
80295248 ATGCCATATCTCAGATATGGTCTTACATGAAGTCTCATATAG
1 ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
*
80295290 ATGCCATATCCCAAATATGGTCTTAC
1 ATGCCATATCCCAGATATGGTCTTAC
80295316 GCATAGTCTT
Statistics
Matches: 95, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
42 60 0.63
43 35 0.37
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
Found at i:80298593 original size:27 final size:26
Alignment explanation
Indices: 80298563--80298648 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 26
80298553 AAAGTCTATC
* * *
80298563 CAGAATTTGCCACAAAGGCTCTTCTTT
1 CAGAGTTT-CCACAAAGGATTTTCTTT
* *
80298590 CAGAGTCCTCCATAAAGGATTTTCTTT
1 CAGAGT-TTCCACAAAGGATTTTCTTT
* *
80298617 CAGAGCTTACCACAAAGGGTTTTCTTT
1 CAGAG-TTTCCACAAAGGATTTTCTTT
80298644 CAGAG
1 CAGAG
80298649 CTCACCATAA
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
27 46 0.96
28 2 0.04
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (26 bp):
CAGAGTTTCCACAAAGGATTTTCTTT
Found at i:80298649 original size:27 final size:27
Alignment explanation
Indices: 80298572--80298655 Score: 98
Period size: 27 Copynumber: 3.1 Consensus size: 27
80298562 CCAGAATTTG
* * *
80298572 CCACAAAGGCTCTTCTTTCAGAGTCCT-
1 CCACAAAGGATTTTCTTTCAGAG-CTTA
*
80298599 CCATAAAGGATTTTCTTTCAGAGCTTA
1 CCACAAAGGATTTTCTTTCAGAGCTTA
* *
80298626 CCACAAAGGGTTTTCTTTCAGAGCTCA
1 CCACAAAGGATTTTCTTTCAGAGCTTA
80298653 CCA
1 CCA
80298656 TAAATGTAAC
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
26 2 0.04
27 47 0.96
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.31
Consensus pattern (27 bp):
CCACAAAGGATTTTCTTTCAGAGCTTA
Found at i:80300592 original size:28 final size:26
Alignment explanation
Indices: 80300528--80300593 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 26
80300518 AACAAAGTTG
80300528 CTAATAACAGTAAACGTGGCAAAGCCA
1 CTAAT-ACAGTAAACGTGGCAAAGCCA
* *
80300555 -TCAGAGCAGTAATTACGTGGCAAAGCCA
1 CTAATA-CAGTAA--ACGTGGCAAAGCCA
80300583 CTAATACAGTA
1 CTAATACAGTA
80300594 CTTCCTCCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
25 1 0.03
26 8 0.26
28 19 0.61
29 3 0.10
ACGTcount: A:0.41, C:0.21, G:0.20, T:0.18
Consensus pattern (26 bp):
CTAATACAGTAAACGTGGCAAAGCCA
Found at i:80306625 original size:40 final size:39
Alignment explanation
Indices: 80306580--80306787 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 39
80306570 CGGAATACAA
80306580 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
80306620 CCGGATTTAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
80306660 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* ** *
80306700 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
** ** * *
80306740 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACGAATGCCTTCGGGTCTTAGC
80306780 CCGGATAT
1 CCGGATAT
80306788 CATTCAATTA
Statistics
Matches: 149, Mismatches: 16, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
39 3 0.02
40 144 0.97
41 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:80306727 original size:80 final size:80
Alignment explanation
Indices: 80306580--80306785 Score: 254
Period size: 80 Copynumber: 2.6 Consensus size: 80
80306570 CGGAATACAA
* * * *
80306580 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAACGACTTGCACGAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAACGACTAGCACGAATG
*
80306645 CCTTCGGGTCTTAGC
66 CCTTCGGGTCTTAAC
* *
80306660 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCAC-AAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTA-ACGACTAGCACGAA-
80306723 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTCTTAAC
** * ** * *
80306740 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
80306786 ATCATTCAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
79 2 0.02
80 106 0.97
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAACGACTAGCACGAATG
CCTTCGGGTCTTAAC
Found at i:80308891 original size:16 final size:16
Alignment explanation
Indices: 80308870--80308906 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
80308860 TCATTGTTTT
*
80308870 TTTTGTACTAAAACTG
1 TTTTGTACTAAAACTA
80308886 TTTTGTACTAAAACTA
1 TTTTGTACTAAAACTA
80308902 TTTTG
1 TTTTG
80308907 GATAGTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.49
Consensus pattern (16 bp):
TTTTGTACTAAAACTA
Found at i:80313639 original size:47 final size:47
Alignment explanation
Indices: 80313587--80313928 Score: 585
Period size: 47 Copynumber: 7.3 Consensus size: 47
80313577 ACAAGATATG
*
80313587 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
80313634 TATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* **
80313681 TATATGTGATAAGGCCGAGTGGCCAACATGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
80313728 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
80313775 TATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
80313822 TATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
80313869 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
80313916 TAAATGTGATAAG
1 TATATGTGATAAG
80313929 TCCCGAAGGG
Statistics
Matches: 280, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 280 1.00
ACGTcount: A:0.35, C:0.09, G:0.29, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:80313853 original size:22 final size:22
Alignment explanation
Indices: 80313825--80313900 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
80313815 AAGTGTATAT
80313825 ATGTGATAAGGCCAAATGGCCA
1 ATGTGATAAGGCCAAATGGCCA
* ** ***
80313847 ATGTGATGAATGTGAAAGTGTATA
1 ATGTGAT-AAGGCCAAA-TGGCCA
*
80313871 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCAAATGGCCA
80313894 ATGTGAT
1 ATGTGAT
80313901 GAATGTGAAA
Statistics
Matches: 38, Mismatches: 13, Indels: 6
0.67 0.23 0.11
Matches are distributed among these distances:
22 14 0.37
23 9 0.24
24 8 0.21
25 7 0.18
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCAAATGGCCA
Found at i:80315847 original size:16 final size:15
Alignment explanation
Indices: 80315826--80315855 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
80315816 ATTTTGGTAT
80315826 ACATGATATGATATGC
1 ACATGATATG-TATGC
80315842 ACATGATATGTATG
1 ACATGATATGTATG
80315856 ATATGCACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.33
Consensus pattern (15 bp):
ACATGATATGTATGC
Found at i:80315963 original size:26 final size:25
Alignment explanation
Indices: 80315916--80315979 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
80315906 AGGAAGTGAA
* *
80315916 AAAAGGGC-TATGCCCCAATTTACC
1 AAAAGGGCTTTTGCACCAATTTACC
* *
80315940 GAAAAGGGCTTTTGCACCAGTTTATC
1 -AAAAGGGCTTTTGCACCAATTTACC
80315966 AAAAGGGCTTTTGC
1 AAAAGGGCTTTTGC
80315980 CCTAGTTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 22 0.65
26 12 0.35
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTTGCACCAATTTACC
Found at i:80315986 original size:25 final size:24
Alignment explanation
Indices: 80315941--80315999 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 24
80315931 CAATTTACCG
80315941 AAAAGGGCTTTTGCACCAGTTTATC
1 AAAAGGGCTTTTGCACCAG-TTATC
*
80315966 AAAAGGGCTTTTGC-CCTAGTTATT
1 AAAAGGGCTTTTGCACC-AGTTATC
80315990 AAAAGAGGCT
1 AAAAG-GGCT
80316000 AGGCCTCCAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 11 0.35
25 20 0.65
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (24 bp):
AAAAGGGCTTTTGCACCAGTTATC
Found at i:80316852 original size:20 final size:20
Alignment explanation
Indices: 80316827--80316872 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
80316817 TTCCATTCAC
80316827 TTGGTTAAAG-TTAACAAAAG
1 TTGGTT-AAGCTTAACAAAAG
**
80316847 TTGGTTTTGCTTAACAAAAG
1 TTGGTTAAGCTTAACAAAAG
80316867 TTGGTT
1 TTGGTT
80316873 TTAAAGCGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 1 0.04
20 22 0.96
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.39
Consensus pattern (20 bp):
TTGGTTAAGCTTAACAAAAG
Found at i:80316873 original size:20 final size:20
Alignment explanation
Indices: 80316837--80316874 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
80316827 TTGGTTAAAG
80316837 TTAACAAAAGTTGGTTTTGC
1 TTAACAAAAGTTGGTTTTGC
80316857 TTAACAAAAGTTGGTTTT
1 TTAACAAAAGTTGGTTTT
80316875 AAAGCGCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (20 bp):
TTAACAAAAGTTGGTTTTGC
Found at i:80323624 original size:16 final size:15
Alignment explanation
Indices: 80323603--80323632 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
80323593 ATTTTGGTAT
80323603 ACATGATATGATATGC
1 ACATGATATG-TATGC
80323619 ACATGATATGTATG
1 ACATGATATGTATG
80323633 ATATGCACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.33
Consensus pattern (15 bp):
ACATGATATGTATGC
Found at i:80323721 original size:25 final size:25
Alignment explanation
Indices: 80323693--80323763 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 25
80323683 AGGAAGTGCA
80323693 AAAAGGGC-TATGCCCCAGTTTAAC
1 AAAAGGGCTTATGCCCCAGTTTAAC
* *
80323717 GAAAAGGGCTTTTGCCCCAGTTTATC
1 -AAAAGGGCTTATGCCCCAGTTTAAC
* * *
80323743 AAAAGGTCTTTTACCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
80323764 ATTAAAAGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 27 0.66
26 14 0.34
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTATGCCCCAGTTTAAC
Found at i:80323770 original size:24 final size:25
Alignment explanation
Indices: 80323705--80323771 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
80323695 AAGGGCTATG
* *
80323705 CCCCAGTTTAACGAAAAGGGCTTTTG
1 CCCCAGTTTATC-AAAAGGGCTTTTA
*
80323731 CCCCAGTTTATCAAAAGGTCTTTTA
1 CCCCAGTTTATCAAAAGGGCTTTTA
*
80323756 CCCCAG-TTATTAAAAG
1 CCCCAGTTTATCAAAAG
80323772 AAGCAAGGCC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 9 0.24
25 17 0.46
26 11 0.30
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (25 bp):
CCCCAGTTTATCAAAAGGGCTTTTA
Found at i:80324026 original size:31 final size:31
Alignment explanation
Indices: 80323985--80324048 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
80323975 CGTTTACAGT
*
80323985 AAAGGCTTCAGCCCAGTAATATGAAATATGA
1 AAAGGATTCAGCCCAGTAATATGAAATATGA
**
80324016 AAAGGATTCAGCCCAGTGTTATGAAATATGA
1 AAAGGATTCAGCCCAGTAATATGAAATATGA
80324047 AA
1 AA
80324049 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.42, C:0.14, G:0.20, T:0.23
Consensus pattern (31 bp):
AAAGGATTCAGCCCAGTAATATGAAATATGA
Found at i:80326765 original size:27 final size:27
Alignment explanation
Indices: 80326730--80326798 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 27
80326720 TTGTTATAAT
* **
80326730 AAAAGCTTTTCTTTCAGGGTTTGCCAC
1 AAAAGCTTTTCTTTCAGAGTTCACCAC
*
80326757 AAAGGCTTTTCTTTCAGAGTTCACCAC
1 AAAAGCTTTTCTTTCAGAGTTCACCAC
80326784 AAAAGCTTTTCTTTC
1 AAAAGCTTTTCTTTC
80326799 CTAACGTCTT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (27 bp):
AAAAGCTTTTCTTTCAGAGTTCACCAC
Found at i:80330502 original size:29 final size:29
Alignment explanation
Indices: 80330464--80330520 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
80330454 ATAAAATTTC
*
80330464 TTAACGAAATTATCACACAATTATTCTAA
1 TTAACAAAATTATCACACAATTATTCTAA
*
80330493 TTAACAAAATTTTCACACAATTATTCTA
1 TTAACAAAATTATCACACAATTATTCTA
80330521 TCATGCTGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.44, C:0.18, G:0.02, T:0.37
Consensus pattern (29 bp):
TTAACAAAATTATCACACAATTATTCTAA
Found at i:80333720 original size:24 final size:24
Alignment explanation
Indices: 80333688--80333891 Score: 306
Period size: 24 Copynumber: 8.6 Consensus size: 24
80333678 TATCTCAAAT
*
80333688 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
80333712 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
80333736 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
80333760 GCACTATGTGTGCGA---ACTATG
1 GCACTATGTGTGCGATTTACTATG
80333781 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
80333805 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
80333829 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
80333853 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
80333877 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
80333892 ACATAATAAG
Statistics
Matches: 174, Mismatches: 3, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
21 21 0.12
24 153 0.88
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:80333795 original size:93 final size:93
Alignment explanation
Indices: 80333688--80333867 Score: 306
Period size: 93 Copynumber: 1.9 Consensus size: 93
80333678 TATCTCAAAT
*
80333688 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATT
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACTATAGCACTATGTGTGCGATT
*
80333753 CACTATGGCACTATGTGTGCGAACTATG
66 CACTATAGCACTATGTGTGCGAACTATG
* *
80333781 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATT
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACTATAGCACTATGTGTGCGATT
**
80333846 TGCTATAGCACTATGTGTGCGA
66 CACTATAGCACTATGTGTGCGA
80333868 TTTGCTATAG
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 81 1.00
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.34
Consensus pattern (93 bp):
GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACTATAGCACTATGTGTGCGATT
CACTATAGCACTATGTGTGCGAACTATG
Found at i:80340966 original size:2 final size:2
Alignment explanation
Indices: 80340959--80340984 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
80340949 ATCGGGTATG
80340959 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
80340985 AGTATGCCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:80341465 original size:24 final size:24
Alignment explanation
Indices: 80341433--80341639 Score: 324
Period size: 24 Copynumber: 8.6 Consensus size: 24
80341423 TATCTCAAAT
80341433 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
80341457 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
80341481 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
80341505 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
80341529 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
80341553 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* * *
80341577 ACACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
80341601 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
80341625 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
80341640 ACATAATAAG
Statistics
Matches: 176, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 176 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:80354621 original size:39 final size:39
Alignment explanation
Indices: 80354577--80354743 Score: 280
Period size: 39 Copynumber: 4.3 Consensus size: 39
80354567 TATAAGATTG
80354577 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
80354616 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
*
80354655 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * * **
80354694 AATATATCCGGACTTGAGGTCTGCAGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
80354733 AAAATATCCGG
1 AAAATATCCGG
80354744 GTTAAAGACC
Statistics
Matches: 120, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 120 1.00
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.22
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:80364117 original size:27 final size:27
Alignment explanation
Indices: 80364076--80364170 Score: 79
Period size: 27 Copynumber: 3.5 Consensus size: 27
80364066 TTCCCATCAT
* *
80364076 CCTTTATGGCCTACTCTATATGAATAG
1 CCTTTGTGGCATACTCTATATGAATAG
*
80364103 CCTTTGTGGCATACTCTGTAT-AGATAG
1 CCTTTGTGGCATACTCTATATGA-ATAG
* * * *
80364130 TCTTTGTGGCAAATTCTGACTA-GATTA-
1 CCTTTGTGGCATACTCT-A-TATGAATAG
80364157 CCTTTGTGGCATAC
1 CCTTTGTGGCATAC
80364171 CTTACATGAT
Statistics
Matches: 53, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
26 1 0.02
27 47 0.89
28 2 0.04
29 3 0.06
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (27 bp):
CCTTTGTGGCATACTCTATATGAATAG
Found at i:80371883 original size:40 final size:40
Alignment explanation
Indices: 80371826--80372009 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
80371816 TCGAATGATG
* *
80371826 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
80371866 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
80371906 TCCGGGCTAAG-CCCAAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
80371944 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
80371985 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80372010 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
38 26 0.21
39 17 0.13
40 73 0.58
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:80371961 original size:78 final size:80
Alignment explanation
Indices: 80371826--80372007 Score: 237
Period size: 78 Copynumber: 2.3 Consensus size: 80
80371816 TCGAATGATG
*
80371826 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
*
80371891 GTGCGAGTTACTA-A
66 GTGCGAGCTACTATA
* * * **
80371905 TTCCGGGCTAAG-CCCAAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
80371967 TTGTGCGAGCTACTATA
64 TTGTGCGAGCTACTATA
* *
80371984 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
80372008 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
77 1 0.01
78 51 0.57
79 26 0.29
80 11 0.12
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGCTACTATA
Found at i:80374122 original size:21 final size:21
Alignment explanation
Indices: 80374098--80374137 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
80374088 TGCCCCCTCC
*
80374098 ACACGGGCATGTGAGGCCTTT
1 ACACGAGCATGTGAGGCCTTT
*
80374119 ACACGAGCATGTGTGGCCT
1 ACACGAGCATGTGAGGCCT
80374138 CCACATAGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.25, G:0.33, T:0.23
Consensus pattern (21 bp):
ACACGAGCATGTGAGGCCTTT
Found at i:80378472 original size:13 final size:13
Alignment explanation
Indices: 80378454--80378481 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
80378444 AATATAGGGG
80378454 AAAATGTACCATT
1 AAAATGTACCATT
80378467 AAAATGTACCATT
1 AAAATGTACCATT
80378480 AA
1 AA
80378482 CGAATTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (13 bp):
AAAATGTACCATT
Found at i:80383844 original size:29 final size:28
Alignment explanation
Indices: 80383812--80383912 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
80383802 TAGTGGAATC
*
80383812 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
80383841 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
80383869 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
80383899 CGCACACTTAGTGC
1 CGCACACTTAGTGC
80383913 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:80391832 original size:28 final size:28
Alignment explanation
Indices: 80391767--80391867 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
80391757 TATAGTGATC
*
80391767 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
80391796 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
80391824 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
80391854 CGCACACTTAGTGC
1 CGCACACTTAGTGC
80391868 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:80399626 original size:20 final size:20
Alignment explanation
Indices: 80399601--80399638 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
80399591 GTCACATATA
80399601 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
80399621 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
80399639 TAGTTCCTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:80402113 original size:23 final size:22
Alignment explanation
Indices: 80402060--80402113 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
80402050 TTTTTACTCA
80402060 AAAGATAAAAATATGAGAAAAG
1 AAAGATAAAAATATGAGAAAAG
* *
80402082 TAAGTATAAAAATTAT-TGAAAAG
1 AAAG-ATAAAAA-TATGAGAAAAG
80402105 AATAGATAA
1 AA-AGATAA
80402114 TTTTTGTTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 3 0.12
23 18 0.69
24 5 0.19
ACGTcount: A:0.63, C:0.00, G:0.15, T:0.22
Consensus pattern (22 bp):
AAAGATAAAAATATGAGAAAAG
Found at i:80402329 original size:17 final size:18
Alignment explanation
Indices: 80402304--80402346 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
80402294 AATACCAAAT
*
80402304 AATAAATATA-ATTTTTA
1 AATAAATATAGATTTGTA
*
80402321 AATATATATAGATTTGTA
1 AATAAATATAGATTTGTA
*
80402339 AAAAAATA
1 AATAAATA
80402347 GAAAATTGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.40
Consensus pattern (18 bp):
AATAAATATAGATTTGTA
Found at i:80402627 original size:24 final size:25
Alignment explanation
Indices: 80402600--80402650 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
80402590 TATTGATTTT
*
80402600 TTTTTA-TAAAAATTCTCATCGATA
1 TTTTTACTAAAAATTCACATCGATA
*
80402624 -TTTTACTATAAATTCACATCGATA
1 TTTTTACTAAAAATTCACATCGATA
80402648 TTT
1 TTT
80402651 GGGTTCTGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 5 0.22
24 16 0.70
25 2 0.09
ACGTcount: A:0.35, C:0.14, G:0.04, T:0.47
Consensus pattern (25 bp):
TTTTTACTAAAAATTCACATCGATA
Found at i:80414544 original size:15 final size:15
Alignment explanation
Indices: 80414501--80414544 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 15
80414491 GCAATTAGGG
80414501 TTAGGGTTTTGAGAATT
1 TTAGGGTTTT-A-AATT
80414518 TTA-GGTTATTAAATT
1 TTAGGGTT-TTAAATT
80414533 TTAGGGTTTTAA
1 TTAGGGTTTTAA
80414545 GGAAAAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 11 0.44
16 9 0.36
17 5 0.20
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (15 bp):
TTAGGGTTTTAAATT
Found at i:80415675 original size:17 final size:17
Alignment explanation
Indices: 80415633--80415713 Score: 69
Period size: 17 Copynumber: 4.6 Consensus size: 17
80415623 AATTCAATTT
*
80415633 TAATATAAAT-ATTCAA
1 TAATATAAATAATTTAA
80415649 T-ATGACTAAATAATTTAA
1 TAAT-A-TAAATAATTTAA
*
80415667 TAATATAAATAATATAA
1 TAATATAAATAATTTAA
*
80415684 -AATGTGAAATTTAATTTAA
1 TAATAT-AAA--TAATTTAA
80415703 TAATATAAATA
1 TAATATAAATA
80415714 GTAGATATGA
Statistics
Matches: 52, Mismatches: 5, Indels: 15
0.72 0.07 0.21
Matches are distributed among these distances:
15 2 0.04
16 6 0.12
17 21 0.40
18 7 0.13
19 12 0.23
20 4 0.08
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (17 bp):
TAATATAAATAATTTAA
Found at i:80415980 original size:30 final size:30
Alignment explanation
Indices: 80415933--80415995 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
80415923 TGGGAAGTGG
*
80415933 AATGGGAAGGAAGTAAAAGTTTTAGGGAGAA
1 AATGGGAAGGAAGTAAAAATTTT-GGGAGAA
* *
80415964 AATGGG-AGGGAGTAAAAATTTTGGGGGAA
1 AATGGGAAGGAAGTAAAAATTTTGGGAGAA
80415993 AAT
1 AAT
80415996 AAAAAGTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 9 0.31
30 14 0.48
31 6 0.21
ACGTcount: A:0.43, C:0.00, G:0.37, T:0.21
Consensus pattern (30 bp):
AATGGGAAGGAAGTAAAAATTTTGGGAGAA
Found at i:80416158 original size:30 final size:29
Alignment explanation
Indices: 80416100--80416155 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 29
80416090 GTTGGGATGG
*
80416100 GAGGGGAGTAAAATTTTCGGGGAGAAAGT
1 GAGGGGAGTAAAATTTTCGGAGAGAAAGT
80416129 GAGGAGGAGTAAAAGTTTT--GAGAGAAA
1 GAGG-GGAGTAAAA-TTTTCGGAGAGAAA
80416156 AGTAAAAAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
29 11 0.46
30 9 0.38
31 4 0.17
ACGTcount: A:0.39, C:0.02, G:0.39, T:0.20
Consensus pattern (29 bp):
GAGGGGAGTAAAATTTTCGGAGAGAAAGT
Found at i:80416225 original size:9 final size:9
Alignment explanation
Indices: 80416207--80416243 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
80416197 TATAGTTTGA
80416207 TATTCGAAT
1 TATTCGAAT
*
80416216 TATTCAAAT
1 TATTCGAAT
*
80416225 TATTCGAGT
1 TATTCGAAT
80416234 TATTCGAAT
1 TATTCGAAT
80416243 T
1 T
80416244 CGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:80416320 original size:18 final size:18
Alignment explanation
Indices: 80416294--80416328 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
80416284 ATTCGAGTTG
80416294 ACTCAAATAACTCGATTA
1 ACTCAAATAACTCGATTA
*
80416312 ACTCGAATAACTCGATT
1 ACTCAAATAACTCGATT
80416329 CGTTTAACTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.29
Consensus pattern (18 bp):
ACTCAAATAACTCGATTA
Found at i:80426957 original size:46 final size:48
Alignment explanation
Indices: 80426870--80426995 Score: 181
Period size: 46 Copynumber: 2.7 Consensus size: 48
80426860 GGGGTAAGGT
* *
80426870 GCCGATGCCATGTCCCAGACATGGTCATACACTGACA--CATCTCATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACACTCATCTCATA
80426916 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAACACTCATCTCA-A
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACACTCATCTCATA
*
80426961 TGCCGATGCCATGTCCCAGACATGGTTTTACACTA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTA
80426996 GCTCTTATAA
Statistics
Matches: 72, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
44 12 0.17
45 15 0.21
46 21 0.29
47 14 0.19
48 10 0.14
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.25
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAACACTCATCTCATA
Found at i:80427043 original size:46 final size:44
Alignment explanation
Indices: 80426869--80427046 Score: 164
Period size: 46 Copynumber: 3.9 Consensus size: 44
80426859 TGGGGTAAGG
* * *
80426869 TGCCGATGCCATGTCCCAGACATGGTCATACACT-GACACATCTC-A
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTCATATCAA
* *
80426914 TAGCCGATGCATGTCCCAGACATGTCTTACACTAACACTCATCTCAA
1 T-GCCGATGCATGTCCCAGACATGTCTTACACT-A-GCTCATATCAA
* *
80426961 TGCCGATGCCATGTCCCAGACATGGTTTTACACTAGCTCTTAT-AA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCATATCAA
*
80427006 TGTGGCCGATGCATGCCCCAGACATGTCTTACACTAGCTCA
1 --T-GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCA
80427047 CAATGACCCA
Statistics
Matches: 113, Mismatches: 10, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
44 9 0.08
45 17 0.15
46 40 0.35
47 31 0.27
48 16 0.14
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (44 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCATATCAA
Found at i:80427409 original size:30 final size:30
Alignment explanation
Indices: 80427375--80427433 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
80427365 AAATTTATAT
* *
80427375 CTTTGATAAAATGACCATTTTGCCCCTAGA
1 CTTTGACAAAATAACCATTTTGCCCCTAGA
*
80427405 CTTTGACAAAATAATCATTTTGCCCCTAG
1 CTTTGACAAAATAACCATTTTGCCCCTAG
80427434 GCTCGAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.34
Consensus pattern (30 bp):
CTTTGACAAAATAACCATTTTGCCCCTAGA
Found at i:80429141 original size:21 final size:22
Alignment explanation
Indices: 80429115--80429156 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
80429105 ATGGTTGTTT
* *
80429115 ATATTAATATTAA-TTATTAAA
1 ATATTAAAAATAATTTATTAAA
80429136 ATATTAAAAATAATTTATTAA
1 ATATTAAAAATAATTTATTAA
80429157 TAAAATTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
ATATTAAAAATAATTTATTAAA
Found at i:80432378 original size:29 final size:29
Alignment explanation
Indices: 80432336--80432466 Score: 244
Period size: 29 Copynumber: 4.5 Consensus size: 29
80432326 AAAATTGTAC
80432336 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
80432365 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
80432394 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
80432423 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
80432452 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
80432467 GATTCACTAT
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 99 1.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:80434409 original size:29 final size:29
Alignment explanation
Indices: 80434376--80434507 Score: 192
Period size: 29 Copynumber: 4.6 Consensus size: 29
80434366 GTGACGAGAT
80434376 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
80434405 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
80434434 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** *
80434463 TGGCTCTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
80434492 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
80434508 AGTTCGGAGG
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 92 1.00
ACGTcount: A:0.26, C:0.15, G:0.33, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:80437630 original size:28 final size:28
Alignment explanation
Indices: 80437598--80437657 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
80437588 TCCCATATTA
*
80437598 ATGGGGTATAGGAAAAGTTTCATAATTT
1 ATGGGGTATAGGAAAAGTTTCATAACTT
* * *
80437626 ATGGGGTATATGAAGAGTTTTATAACTT
1 ATGGGGTATAGGAAAAGTTTCATAACTT
80437654 ATGG
1 ATGG
80437658 AGTTGATAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.33, C:0.03, G:0.27, T:0.37
Consensus pattern (28 bp):
ATGGGGTATAGGAAAAGTTTCATAACTT
Found at i:80443670 original size:49 final size:49
Alignment explanation
Indices: 80443603--80444001 Score: 684
Period size: 49 Copynumber: 8.3 Consensus size: 49
80443593 TACATGATAG
80443603 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
80443652 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
80443701 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
80443750 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
80443797 TATTTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
80443846 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
80443895 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * * * *
80443942 TATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
80443991 -A-ATGTGATAAG
1 TATATGTGATAAG
80444002 TCCCGAAGGG
Statistics
Matches: 337, Mismatches: 9, Indels: 10
0.95 0.03 0.03
Matches are distributed among these distances:
47 97 0.29
48 1 0.00
49 239 0.71
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:80443772 original size:98 final size:98
Alignment explanation
Indices: 80443603--80444001 Score: 684
Period size: 96 Copynumber: 4.1 Consensus size: 98
80443593 TACATGATAG
80443603 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
80443668 TAATGGCCGATGTGATGAATGTGAAAGTGTATA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATA
80443701 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
80443766 TAATGGCCGATGTGATGAATGTGAAA--GTATA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
80443797 TATTTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
80443862 TAATGGCCGATGTGATGAATGTGAAAGTGTATA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
80443895 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* * * * *
80443958 GAGTGGCCAACGTGATGGATGTGAAAGTGTATA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATA
80443991 -A-ATGTGATAAG
1 TATATGTGATAAG
80444002 TCCCGAAGGG
Statistics
Matches: 290, Mismatches: 9, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
94 10 0.03
95 1 0.00
96 140 0.48
98 139 0.48
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (98 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:80443866 original size:145 final size:145
Alignment explanation
Indices: 80443603--80444001 Score: 685
Period size: 145 Copynumber: 2.8 Consensus size: 145
80443593 TACATGATAG
80443603 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATATATATGTGATAAGGCC
80443668 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
64 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
80443733 GAATGTGAAAGTGTATA
129 GAATGTGAAAGTGTATA
*
80443750 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATTTGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTA
80443815 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
80443880 ATGTGAAAGTGTATA
131 ATGTGAAAGTGTATA
* * * *
80443895 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTA
* * * *
80443960 GTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
66 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
80444002 TCCCGAAGGG
Statistics
Matches: 242, Mismatches: 10, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
143 10 0.04
144 1 0.00
145 189 0.78
147 42 0.17
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (145 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTA
ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATA
Found at i:80447139 original size:28 final size:28
Alignment explanation
Indices: 80447087--80447149 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
80447077 TCCCATATTA
*
80447087 ATGGGGTATAGGAAAAGTCTCATAATTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
* *
80447115 ATGGGGTATAGGAAAAGTTTTATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
*
80447143 ATAGGGT
1 ATGGGGT
80447150 TGATAATGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (28 bp):
ATGGGGTATAGGAAAAGTCTCATAACTT
Found at i:80448299 original size:16 final size:16
Alignment explanation
Indices: 80448276--80448329 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
80448266 CGTTTGGTTG
*
80448276 GCTGTAATGGAATAGG
1 GCTGTAATGGAATAGA
* *
80448292 GTTGTAATTGAATAGA
1 GCTGTAATGGAATAGA
*
80448308 GCTATAATGGAATAGA
1 GCTGTAATGGAATAGA
80448324 GCTGTA
1 GCTGTA
80448330 TTAAGTAATT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.35, C:0.06, G:0.30, T:0.30
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:80452866 original size:29 final size:29
Alignment explanation
Indices: 80452834--80452904 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
80452824 TACATTATTG
* *
80452834 TTTTCATA-TTATTTTATGTAAATATTTTC
1 TTTT-ATATTTATTGTATATAAATATTTTC
*
80452863 TTTTATATTTATTGTATATATATATTTTC
1 TTTTATATTTATTGTATATAAATATTTTC
*
80452892 TTTTAAATTTATT
1 TTTTATATTTATT
80452905 ATGCATAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.28, C:0.04, G:0.03, T:0.65
Consensus pattern (29 bp):
TTTTATATTTATTGTATATAAATATTTTC
Found at i:80453667 original size:126 final size:126
Alignment explanation
Indices: 80453436--80453739 Score: 445
Period size: 126 Copynumber: 2.4 Consensus size: 126
80453426 AATATAAGGA
* * *
80453436 AATATTTCGAATTTGGGGAGTTTGAGAGATCGTGCCCAATCGTGTTGGGTTTCAATTTTTCATTC
1 AATATTTCGTATTTGGGGAGCTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCAATTTTTCATTC
* *
80453501 GACTAAAATACGGAATATCCTTTTGAAATTACATCTATGTTTTCTTAAATTAAAACT-AGGC
66 GACTAAAATACAGAATATCCTTTTGAAATTACATCCATGTTTTCTTAAATTAAAA-TGAGGC
*
80453562 AATATTTCGTATTTGGGGAGCTTGAGAGATCGTGCCTAATCGTGCTGGGTTTCAATTTTTCATTC
1 AATATTTCGTATTTGGGGAGCTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCAATTTTTCATTC
*
80453627 GACTAAAATACAGAATATCCTTTTGAAATTTCATCCATGTTTTCTTAAATTAAAATGAGGC
66 GACTAAAATACAGAATATCCTTTTGAAATTACATCCATGTTTTCTTAAATTAAAATGAGGC
* * ** *
80453688 AATGTTTTGTATTT--GGAAATTCG-GTAAATCGTGCCCAATCGTGCTGGGTTTC
1 AATATTTCGTATTTGGGGAGCTT-GAG-AGATCGTGCCCAATCGTGCTGGGTTTC
80453740 GGTTTATCGT
Statistics
Matches: 162, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
124 6 0.04
125 27 0.17
126 129 0.80
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (126 bp):
AATATTTCGTATTTGGGGAGCTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCAATTTTTCATTC
GACTAAAATACAGAATATCCTTTTGAAATTACATCCATGTTTTCTTAAATTAAAATGAGGC
Found at i:80459534 original size:24 final size:24
Alignment explanation
Indices: 80459507--80459568 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 24
80459497 CTCAACCATG
*
80459507 GAAGAACGAGATGAAAATGAATAT
1 GAAGAACGAGATGAAAATGAAGAT
** * *
80459531 GAAGCTCGAGGTGAAGATGAAGAT
1 GAAGAACGAGATGAAAATGAAGAT
80459555 GAAGAA-GATGATGA
1 GAAGAACGA-GATGA
80459569 GTCGGAACCC
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
23 2 0.07
24 27 0.93
ACGTcount: A:0.47, C:0.05, G:0.32, T:0.16
Consensus pattern (24 bp):
GAAGAACGAGATGAAAATGAAGAT
Found at i:80463630 original size:22 final size:22
Alignment explanation
Indices: 80463604--80463647 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
80463594 ATAAAAATAC
*
80463604 ATTAAATATGTATAATATTAAA
1 ATTAAATAGGTATAATATTAAA
*
80463626 ATTAAATAGGTATTATATTAAA
1 ATTAAATAGGTATAATATTAAA
80463648 TTTTATAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (22 bp):
ATTAAATAGGTATAATATTAAA
Found at i:80464195 original size:20 final size:18
Alignment explanation
Indices: 80464163--80464207 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 18
80464153 AAATATATAA
*
80464163 ATACATAAAAATTAA--T
1 ATACATAAAATTTAATTT
*
80464179 ATATATAAAATTTAATTT
1 ATACATAAAATTTAATTT
80464197 ATACATAAAAT
1 ATACATAAAAT
80464208 AAATAAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 13 0.54
18 11 0.46
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (18 bp):
ATACATAAAATTTAATTT
Found at i:80464654 original size:15 final size:16
Alignment explanation
Indices: 80464634--80464666 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
80464624 TATATATTTT
80464634 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
80464649 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
80464666 T
1 T
80464667 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:80464752 original size:22 final size:22
Alignment explanation
Indices: 80464713--80464771 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
80464703 GTTTTAAGAA
*
80464713 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
80464734 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
80464756 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
80464772 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:80464788 original size:26 final size:24
Alignment explanation
Indices: 80464742--80464790 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
80464732 ATTTGTTTTA
*
80464742 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
80464766 ATATTTGATTTATTATATTTTTAAA
1 ATATTT-ATTT-TTATATTTTTAAA
80464791 ATTTTTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.27
25 4 0.18
26 12 0.55
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:80464802 original size:26 final size:26
Alignment explanation
Indices: 80464745--80464803 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
80464735 TGTTTTAATA
*
80464745 TTTATTT-TTATGTTTTTAAATATAT
1 TTTATTTATTATATTTTTAAATATAT
* *
80464770 TTGATTTATTATATTTTTAAA-ATTTT
1 TTTATTTATTATATTTTTAAATA-TAT
80464796 TTTATTTA
1 TTTATTTA
80464804 ATGCAATAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 7 0.25
26 21 0.75
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (26 bp):
TTTATTTATTATATTTTTAAATATAT
Found at i:80464838 original size:5 final size:5
Alignment explanation
Indices: 80464828--80464858 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
80464818 AAAATTAATA
80464828 CGGGC CGGGC CGGGC CGGGC CGGGC TCGGGC
1 CGGGC CGGGC CGGGC CGGGC CGGGC -CGGGC
80464859 TTAGTAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.00, C:0.39, G:0.58, T:0.03
Consensus pattern (5 bp):
CGGGC
Found at i:80465188 original size:22 final size:21
Alignment explanation
Indices: 80465163--80465241 Score: 65
Period size: 20 Copynumber: 3.7 Consensus size: 21
80465153 TATTAAAAAT
80465163 AAATTAAAATAAAAAATTTTAA
1 AAATTAAAA-AAAAAATTTTAA
*
80465185 AAA-T-ACAAAAAAATTATTAA
1 AAATTAAAAAAAAAATT-TTAA
*
80465205 AAATCTCAAAAAAAAAA-CTTATA
1 AAAT-T-AAAAAAAAAATTTTA-A
*
80465228 AAATTATAAAAAAA
1 AAATTAAAAAAAAA
80465242 TAATAATTTA
Statistics
Matches: 47, Mismatches: 4, Indels: 13
0.73 0.06 0.20
Matches are distributed among these distances:
19 8 0.17
20 9 0.19
21 9 0.19
22 8 0.17
23 5 0.11
24 8 0.17
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (21 bp):
AAATTAAAAAAAAAATTTTAA
Found at i:80465196 original size:20 final size:21
Alignment explanation
Indices: 80465173--80465218 Score: 69
Period size: 19 Copynumber: 2.3 Consensus size: 21
80465163 AAATTAAAAT
80465173 AAAAAATT-TTAAAAAT-ACA
1 AAAAAATTATTAAAAATCACA
*
80465192 AAAAAATTATTAAAAATCTCA
1 AAAAAATTATTAAAAATCACA
80465213 AAAAAA
1 AAAAAA
80465219 AAACTTATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 8 0.33
20 8 0.33
21 8 0.33
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.24
Consensus pattern (21 bp):
AAAAAATTATTAAAAATCACA
Found at i:80465197 original size:26 final size:27
Alignment explanation
Indices: 80465146--80465198 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
80465136 TACACTTGTC
*
80465146 AAAAAATTATTAAAAATAAATTAAAAT
1 AAAAAATTATTAAAAATAAATAAAAAT
80465173 AAAAAATT-TTAAAAATACAA-AAAAAT
1 AAAAAATTATTAAAAATA-AATAAAAAT
80465199 TATTAAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 14 0.58
27 10 0.42
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (27 bp):
AAAAAATTATTAAAAATAAATAAAAAT
Found at i:80465241 original size:46 final size:45
Alignment explanation
Indices: 80465146--80465242 Score: 108
Period size: 44 Copynumber: 2.2 Consensus size: 45
80465136 TACACTTGTC
* * *
80465146 AAAAAATTATTAAAAATAAATTAAAATAAAAAATTTTAAAAATACA
1 AAAAAATTATTAAAAAT-AATCAAAATAAAAAATTATAAAAATAAA
* * *
80465192 AAAAAATTATTAAAAAT-CTCAAAA-AAAAAACTTATAAAATTATA
1 AAAAAATTATTAAAAATAATCAAAATAAAAAA-TTATAAAAATAAA
80465236 AAAAAAT
1 AAAAAAT
80465243 AATAATTTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
43 6 0.13
44 22 0.49
46 17 0.38
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (45 bp):
AAAAAATTATTAAAAATAATCAAAATAAAAAATTATAAAAATAAA
Found at i:80469086 original size:40 final size:40
Alignment explanation
Indices: 80469003--80469230 Score: 322
Period size: 40 Copynumber: 5.8 Consensus size: 40
80468993 GGATATAGCT
* * *
80469003 ACTCGCTCAAATGCCTT-GGGACATAG-CCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
80469041 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
80469081 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
80469121 ACTCGCACAAATGCCTTCGGGACTTAG-CCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
** *
80469160 ACTCGCACAAATGCCTTCGGGACTT-GCCCGGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
80469199 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
80469231 TTATCATCCA
Statistics
Matches: 174, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
38 16 0.09
39 76 0.44
40 80 0.46
41 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:80469163 original size:39 final size:39
Alignment explanation
Indices: 80468977--80469227 Score: 303
Period size: 39 Copynumber: 6.4 Consensus size: 39
80468967 AAATCACGTA
* * * * *
80468977 CCTTCGGAATTTAACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCGGATTTAG-TAACTCGCACAAATG
* * *
80469016 CCTT-GGGACATAGCCGG-TTAGAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCGGATT-TAGTAACTCGCACAAATG
80469054 CCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGATTTAGTAACTCGCACAAATG
80469094 CCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGATTTAGTAACTCGCACAAATG
80469134 CCTTCGGGACTTAGCCGGATTTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCGGATTTAGTAACTCGCACAAATG
** * * * *
80469173 CCTTCGGGACTT-GCCCGGAACTAGTCACTAGCGCAGATG
1 CCTTCGGGACTTAG-CCGGATTTAGTAACTCGCACAAATG
80469212 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
80469228 CGGTTATCAT
Statistics
Matches: 188, Mismatches: 17, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
37 2 0.01
38 27 0.14
39 82 0.44
40 75 0.40
41 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATTTAGTAACTCGCACAAATG
Found at i:80469219 original size:118 final size:118
Alignment explanation
Indices: 80469003--80469230 Score: 334
Period size: 118 Copynumber: 1.9 Consensus size: 118
80468993 GGATATAGCT
* *
80469003 ACTCGCTCAAATGCCTTGGGACATAGCCGGTTAGAGTAACTCGCACAATTGCCTTCGGGACTTAG
1 ACTCGCACAAATGCCTTGGGACATAGCCGGTTAGAGTAACTCGCACAAATGCCTTCGGGACTTAG
** *
80469068 CCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
66 CCCGGAACTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
80469121 ACTCGCACAAATGCCTTCGGGACTTAGCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTT-GGGACATAGCCGG-TTAGAGTAACTCGCACAAATGCCTTCGGGACTT
* * *
80469185 -GCCCGGAACTAGTCACTAGCGCAGATGCCTTCGGGACTTAGCCCGG
64 AGCCCGGAACTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
80469231 TTATCATCCA
Statistics
Matches: 98, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
118 56 0.57
119 40 0.41
120 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.24
Consensus pattern (118 bp):
ACTCGCACAAATGCCTTGGGACATAGCCGGTTAGAGTAACTCGCACAAATGCCTTCGGGACTTAG
CCCGGAACTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:80469939 original size:2 final size:2
Alignment explanation
Indices: 80469932--80469963 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
80469922 ATGTGCAAAC
80469932 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80469964 GTGCAAGAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80477205 original size:40 final size:40
Alignment explanation
Indices: 80477111--80477339 Score: 322
Period size: 40 Copynumber: 5.8 Consensus size: 40
80477101 GGATATAGCT
* * *
80477111 ACTCGCTCAAATGCCTTCGGGACATAG-CCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
80477150 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
80477190 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
80477230 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* ** *
80477270 ACTCACACAAATGCCTTCGGGACTT-GCCC-GAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
80477308 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
80477340 TTATCATCCA
Statistics
Matches: 173, Mismatches: 13, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
38 27 0.16
39 32 0.18
40 112 0.65
41 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:80478050 original size:2 final size:2
Alignment explanation
Indices: 80478043--80478068 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
80478033 ATGTGCAAAC
80478043 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
80478069 GTGCAAGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80480215 original size:80 final size:80
Alignment explanation
Indices: 80480131--80480279 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
80480121 TATGGTAACC
* * * *
80480131 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
80480195 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
80480211 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
80480276 CCGG
66 CCGG
80480280 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:80480221 original size:40 final size:38
Alignment explanation
Indices: 80480172--80480279 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
80480162 ATCACGATTT
*
80480172 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
80480212 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
80480252 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
80480280 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:80488566 original size:40 final size:40
Alignment explanation
Indices: 80488460--80488643 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
80488450 TGCTGGAAAT
* * * * * **
80488460 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
80488500 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
80488540 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
80488578 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
80488619 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
80488644 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:80496653 original size:40 final size:40
Alignment explanation
Indices: 80496547--80496730 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
80496537 TGCTGGAAAT
* * * * * **
80496547 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
80496587 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
80496627 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
80496665 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
80496706 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
80496731 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:80499735 original size:40 final size:38
Alignment explanation
Indices: 80499686--80499792 Score: 119
Period size: 39 Copynumber: 2.7 Consensus size: 38
80499676 ATCACGATTT
*
80499686 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
80499726 GCACGAATGCCTTCGGGTCTTAG-CCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
80499765 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
80499793 TTATAATTTC
Statistics
Matches: 59, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
37 1 0.02
38 4 0.07
39 28 0.47
40 26 0.44
ACGTcount: A:0.21, C:0.29, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:80499776 original size:39 final size:39
Alignment explanation
Indices: 80499686--80499835 Score: 126
Period size: 40 Copynumber: 3.8 Consensus size: 39
80499676 ATCACGATTT
*
80499686 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
80499726 GCACGAATGCCTTCGGGTCTTAG-CCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * * ** *
80499765 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
80499805 GCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
80499836 TCATTCAATT
Statistics
Matches: 89, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
37 1 0.01
38 4 0.04
39 28 0.31
40 55 0.62
41 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:80502133 original size:47 final size:45
Alignment explanation
Indices: 80502076--80502202 Score: 139
Period size: 47 Copynumber: 2.7 Consensus size: 45
80502066 TTTGTCGAGG
** **
80502076 CTGATGCATGTCCCAGACATGTCTTACTTTGGCACTCATCTTTGTGC
1 CTGA-GCATGTCCCAGACATGTCTTACACTGGCACTCAT-AATGTGC
* *
80502123 CT-ATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATAATGTGC
1 CTGA-G-CATGTCCCAGACAT-GTCTTACACTGGCACTCATAATGTGC
80502170 CTGGAGCATGTCCCAGACATGTCTTACACTGGC
1 CT-GAGCATGTCCCAGACATGTCTTACACTGGC
80502203 GTACACACTG
Statistics
Matches: 69, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
46 16 0.23
47 35 0.51
48 17 0.25
49 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.20, T:0.31
Consensus pattern (45 bp):
CTGAGCATGTCCCAGACATGTCTTACACTGGCACTCATAATGTGC
Found at i:80508149 original size:11 final size:11
Alignment explanation
Indices: 80508133--80508157 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
80508123 TCGAAGAAAA
80508133 TATTTTATTAT
1 TATTTTATTAT
80508144 TATTTTATTAT
1 TATTTTATTAT
80508155 TAT
1 TAT
80508158 AACATGTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TATTTTATTAT
Found at i:80509512 original size:49 final size:49
Alignment explanation
Indices: 80509273--80509584 Score: 253
Period size: 49 Copynumber: 6.6 Consensus size: 49
80509263 GTGAGCCAGC
* * * *
80509273 GTAAGACCATGTCTGGGACATGGCATC-AATATTTAGATGAGAG-CTAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGA-CTTGAGATGTGAGTCTAGT
** * * * * *
80509321 GTAAG-GGATGTCTGGGACAT-GCATTGGCCTTGATACGTAAG-CTAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGACTTGAGATGTGAGTCTAGT
* *
80509367 GTAAGA-CATGTTTGGGACAT-GCATC-GACTACGAGATGT--GTC-AGT
1 GTAAGACCATGTCTGGGACATGGCATCGGACT-TGAGATGTGAGTCTAGT
* * * *
80509411 GTAAGACCATGTCTGGGACAT-GCATCGG-CATGGATATGTGAGAGCTATT
1 GTAAGACCATGTCTGGGACATGGCATCGGAC-TTGAGATGTGAG-TCTAGT
* *
80509460 GTAAGACCATGTTTGGGACATGGCATCGGCCTTGATGATGAT-AGTC-AGT
1 GTAAGACCATGTCTGGGACATGGCATCGGACTTGA-GATG-TGAGTCTAGT
* * *
80509509 GTAAGACCTTGTCTGGGACATGGCATC-AACTTGAGATATGAG-CTAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGACTTGAGATGTGAGTCTAGT
80509556 GTAAGACCATGTCTGGGACATGGCATCGG
1 GTAAGACCATGTCTGGGACATGGCATCGG
80509585 TATTCTACCC
Statistics
Matches: 211, Mismatches: 35, Indels: 36
0.75 0.12 0.13
Matches are distributed among these distances:
44 10 0.05
45 29 0.14
46 46 0.22
47 48 0.23
48 11 0.05
49 49 0.23
50 11 0.05
51 6 0.03
52 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (49 bp):
GTAAGACCATGTCTGGGACATGGCATCGGACTTGAGATGTGAGTCTAGT
Found at i:80509522 original size:98 final size:94
Alignment explanation
Indices: 80509328--80509584 Score: 294
Period size: 96 Copynumber: 2.7 Consensus size: 94
80509318 AGTGTAAGGG
* * *
80509328 ATGTCTGGGACATGCATTGGCCTTGATACGTA-AGCTAGTGTAAGA-CATGTTTGGGACAT-GCA
1 ATGTCTGGGACATGCATCGGCATGGATA-GTAGAGCTAGTGTAAGACCATGTTTGGGACATGGCA
80509390 TC-GACTACGAGATGTGTCAGTGTAAGACC
65 TCGGACTACGAGATGTGTCAGTGTAAGACC
*
80509419 ATGTCTGGGACATGCATCGGCATGGATATGTGAGAGCTATTGTAAGACCATGTTTGGGACATGGC
1 ATGTCTGGGACATGCATCGGCATGGATA-GT-AGAGCTAGTGTAAGACCATGTTTGGGACATGGC
* *
80509484 ATCGGCCT-TGATGATGATAGTCAGTGTAAGACC
64 ATCGGACTACGA-GATG-T-GTCAGTGTAAGACC
* ** * *
80509517 TTGTCTGGGACATGGCATCAACTTGAGATA-T-GAGCTAGTGTAAGACCATGTCTGGGACATGGC
1 ATGTCTGGGACAT-GCATCGGCATG-GATAGTAGAGCTAGTGTAAGACCATGTTTGGGACATGGC
80509580 ATCGG
64 ATCGG
80509585 TATTCTACCC
Statistics
Matches: 143, Mismatches: 13, Indels: 15
0.84 0.08 0.09
Matches are distributed among these distances:
91 27 0.19
92 1 0.01
93 12 0.08
94 14 0.10
95 7 0.05
96 42 0.29
97 1 0.01
98 27 0.19
99 8 0.06
100 4 0.03
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (94 bp):
ATGTCTGGGACATGCATCGGCATGGATAGTAGAGCTAGTGTAAGACCATGTTTGGGACATGGCAT
CGGACTACGAGATGTGTCAGTGTAAGACC
Found at i:80516996 original size:49 final size:47
Alignment explanation
Indices: 80516731--80517050 Score: 176
Period size: 46 Copynumber: 6.8 Consensus size: 47
80516721 TGCGTTATTG
* * * **
80516731 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCACCAACATTTAGACGA
1 TGAGCCAGTGTAAGACCTTGTCTGGGACATGGCATCGAC-TCGAGA-GA
* * *
80516780 -GAGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGACTCGAGACG-
1 TGAGCCAGTGTAAGACCTTGTCTGGGACATGGCATC-GACTCGAGA-GA
* * * * * *
80516825 TAAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCTAC-A-TGA
1 TGAGCCAGTGTAAGACCTTGTCTGGGACATGGCATCGACT-CGAGAGA
* * * * * * * *
80516869 TGTGTCAGTGTAAGACCATGTCTGGGACATTGCATTGGCATGGATATG-
1 TGAGCCAGTGTAAGACCTTGTCTGGGACATGGCATCGAC-TCGAGA-GA
* * * *
80516917 TGAGAGCTAGTGTAAGACCATT-TCTAGGACATGGCGTCGGCCTCGATGACGA
1 T--GAGCCAGTGTAAGACC-TTGTCTGGGACATGGCATC-GACTCGA-GA-GA
* * *
80516969 T-AGTCAGTGTAAGACCTTGTCTGGGACATGGCATCGACTTGAGATA
1 TGAGCCAGTGTAAGACCTTGTCTGGGACATGGCATCGACTCGAGAGA
*
80517015 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 TGAGCCAGTGTAAGACCTTGTCTGGGACATGGCATC
80517051 TGTATTCTAC
Statistics
Matches: 215, Mismatches: 38, Indels: 38
0.74 0.13 0.13
Matches are distributed among these distances:
43 1 0.00
44 11 0.05
45 18 0.08
46 51 0.24
47 51 0.24
48 21 0.10
49 28 0.13
50 28 0.13
51 5 0.02
52 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (47 bp):
TGAGCCAGTGTAAGACCTTGTCTGGGACATGGCATCGACTCGAGAGA
Found at i:80523476 original size:30 final size:29
Alignment explanation
Indices: 80523441--80523514 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
80523431 CTTCGAGCTC
* *
80523441 GCACACCCAGTGCCGTATTTTTTCCAGCAT
1 GCACACCCAGTGCCATA-TATTTCCAGCAT
**
80523471 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
80523500 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
80523515 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 26 0.65
30 14 0.35
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.28
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:80523946 original size:19 final size:18
Alignment explanation
Indices: 80523910--80523967 Score: 57
Period size: 20 Copynumber: 3.2 Consensus size: 18
80523900 AGAATGAACA
*
80523910 CTTT-TTTTT-TTCTTTT
1 CTTTGTTTTTCTTCATTT
80523926 CTTTGTTTTTCTTCATATT
1 CTTTGTTTTTCTTCAT-TT
* *
80523945 CTCTTTTTTTTTTTCATTT
1 CT-TTGTTTTTCTTCATTT
80523964 CTTT
1 CTTT
80523968 ATTCTTCCTA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
16 4 0.11
17 5 0.14
18 6 0.17
19 8 0.23
20 12 0.34
ACGTcount: A:0.05, C:0.16, G:0.02, T:0.78
Consensus pattern (18 bp):
CTTTGTTTTTCTTCATTT
Found at i:80530603 original size:30 final size:29
Alignment explanation
Indices: 80530568--80530641 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
80530558 CTTCGAGCTC
* *
80530568 GCACACCCAGTGCCGTATTTTTTCCAGCAT
1 GCACACCCAGTGCCATA-TATTTCCAGCAT
**
80530598 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
80530627 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
80530642 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 26 0.65
30 14 0.35
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.28
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:80531076 original size:19 final size:17
Alignment explanation
Indices: 80531040--80531096 Score: 62
Period size: 19 Copynumber: 3.2 Consensus size: 17
80531030 AGAATGAACA
*
80531040 CTTTTTTTT-TTCTTTT
1 CTTTTTTTTCTTCATTT
80531056 CTTTGTTTTTCTTCATATT
1 CTTT-TTTTTCTTCAT-TT
*
80531075 CTCTTTTTTTTTTCATTT
1 CT-TTTTTTTCTTCATTT
80531093 CTTT
1 CTTT
80531097 ATTCTTCCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
16 4 0.11
17 7 0.20
18 8 0.23
19 14 0.40
20 2 0.06
ACGTcount: A:0.05, C:0.16, G:0.02, T:0.77
Consensus pattern (17 bp):
CTTTTTTTTCTTCATTT
Found at i:80531079 original size:21 final size:18
Alignment explanation
Indices: 80531040--80531094 Score: 69
Period size: 18 Copynumber: 3.0 Consensus size: 18
80531030 AGAATGAACA
80531040 CTTTTTTTTTTC-TTT-T
1 CTTTTTTTTTTCATTTCT
80531056 CTTTGTTTTTCTTCATATTCT
1 CTTT-TTTTT-TTCAT-TTCT
80531077 CTTTTTTTTTTCATTTCT
1 CTTTTTTTTTTCATTTCT
80531095 TTATTCTTCC
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
16 4 0.12
17 5 0.15
18 7 0.21
19 6 0.18
20 7 0.21
21 5 0.15
ACGTcount: A:0.05, C:0.16, G:0.02, T:0.76
Consensus pattern (18 bp):
CTTTTTTTTTTCATTTCT
Found at i:80532109 original size:46 final size:45
Alignment explanation
Indices: 80532042--80532135 Score: 161
Period size: 46 Copynumber: 2.1 Consensus size: 45
80532032 AACATGCACT
80532042 TCTACATGTATAATGCAAGATTACTGCAAACTTGATGATAAAGCTA
1 TCTACATGTATAATGCAAGATTACTGCAAACTTGATGATAAA-CTA
* *
80532088 TCTACATGTATAATGCAAGATTATTGCAAACTTGATGCTAAACTA
1 TCTACATGTATAATGCAAGATTACTGCAAACTTGATGATAAACTA
80532133 TCT
1 TCT
80532136 GCAACTACAT
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
45 6 0.13
46 40 0.87
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (45 bp):
TCTACATGTATAATGCAAGATTACTGCAAACTTGATGATAAACTA
Found at i:80534564 original size:48 final size:47
Alignment explanation
Indices: 80534486--80534622 Score: 168
Period size: 48 Copynumber: 2.9 Consensus size: 47
80534476 TATACCACGG
* *
80534486 TTATACGTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATA
1 TTATACATGTAACGTGGTGCTAAGTGGATATGCCACGATTACACATA
* *
80534533 TTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGATTATACATG
1 TT-ATACATGTAACGTGGTGCTAAGTGGATATGCCACGATTACACATA
** * * * *
80534581 TTA-ATTTGAAAAGTGGTGCTAAGTGCATATGCCACAATTACA
1 TTATACATGTAACGTGGTGCTAAGTGGATATGCCACGATTACA
80534623 TGTTAGCCCA
Statistics
Matches: 78, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
46 32 0.41
47 3 0.04
48 43 0.55
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (47 bp):
TTATACATGTAACGTGGTGCTAAGTGGATATGCCACGATTACACATA
Found at i:80537609 original size:39 final size:39
Alignment explanation
Indices: 80537546--80537778 Score: 349
Period size: 39 Copynumber: 6.0 Consensus size: 39
80537536 AAGACACTGA
* * *
80537546 AAATGTATCCGGGCTAAAGCCCCGCAGGCTTCGTGTTGG
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
* **
80537585 AAATATATCCAAGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
* *
80537624 AAATGTATCCGGACTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
**
80537663 AAATGTATCCGGGCCAAAGTCTTGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
80537702 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
** *
80537741 AAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTG
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTG
80537779 ATAATATAAT
Statistics
Matches: 174, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 174 1.00
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (39 bp):
AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:80541718 original size:28 final size:29
Alignment explanation
Indices: 80541620--80541718 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
80541610 TCACAAATTG
* *
80541620 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
80541649 GCACTAAGTGTGCAAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
*
80541677 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
80541705 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
80541719 GGCTTATTAC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 40 0.67
29 20 0.33
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:80546118 original size:29 final size:27
Alignment explanation
Indices: 80546084--80546186 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
80546074 TACTCAATCA
*
80546084 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
80546113 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
80546142 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
80546171 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
80546187 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:80552642 original size:28 final size:29
Alignment explanation
Indices: 80552544--80552642 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
80552534 TCACAAATTG
* *
80552544 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
80552573 GCACTAAGTGTGCAAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
*
80552601 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
80552629 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
80552643 GGCTTATTAC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 40 0.67
29 20 0.33
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:80555550 original size:26 final size:25
Alignment explanation
Indices: 80555485--80555551 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 25
80555475 AAAAACAAAT
80555485 AAATAATAAAAATTACAAATCCAAC
1 AAATAATAAAAATTACAAATCCAAC
*
80555510 ---TAATAAATAA-CACAACA-CCACAC
1 AAATAATAAA-AATTACAA-ATCCA-AC
80555533 AAATAATAAAAATTACAAA
1 AAATAATAAAAATTACAAA
80555552 ACAAAAAAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 14
0.67 0.04 0.29
Matches are distributed among these distances:
22 14 0.42
23 5 0.15
25 3 0.09
26 11 0.33
ACGTcount: A:0.64, C:0.18, G:0.00, T:0.18
Consensus pattern (25 bp):
AAATAATAAAAATTACAAATCCAAC
Found at i:80557527 original size:49 final size:49
Alignment explanation
Indices: 80557436--80557532 Score: 122
Period size: 49 Copynumber: 2.0 Consensus size: 49
80557426 ATTTATTTAT
* * ** * *
80557436 AGGTTGAAAAACCTTATTCTAATCAATGTCAAATGGATGAAGTGTAGTA
1 AGGTTGAAAAACATTATTCTAATCAATGTAAAATAAAAGAAGTATAGTA
* *
80557485 AGGTTGGAAAACATTATTCTAATTAATGTAAAATAAAAGAAGTATAGT
1 AGGTTGAAAAACATTATTCTAATCAATGTAAAATAAAAGAAGTATAGT
80557533 TCTATATGAA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
49 40 1.00
ACGTcount: A:0.43, C:0.07, G:0.19, T:0.31
Consensus pattern (49 bp):
AGGTTGAAAAACATTATTCTAATCAATGTAAAATAAAAGAAGTATAGTA
Done.