Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 279 of 444
Found at i:80562908 original size:2 final size:2
Alignment explanation
Indices: 80562901--80562935 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
80562891 ACTATACACT
80562901 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
80562936 GGCATTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:80563976 original size:19 final size:19
Alignment explanation
Indices: 80563954--80563993 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
80563944 AATTATTCTT
80563954 TCACTAATTACACATATAC
1 TCACTAATTACACATATAC
*
80563973 TCACTAATTACACTTATAC
1 TCACTAATTACACATATAC
80563992 TC
1 TC
80563994 TTAACAAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.28, G:0.00, T:0.35
Consensus pattern (19 bp):
TCACTAATTACACATATAC
Found at i:80567253 original size:36 final size:35
Alignment explanation
Indices: 80567213--80567281 Score: 102
Period size: 35 Copynumber: 1.9 Consensus size: 35
80567203 GTGAAAGAGG
* *
80567213 ATATGAGGGTATGTTATTCATGCCATGTGACAGTAA
1 ATATGAGAGTATGTT-TTCATACCATGTGACAGTAA
*
80567249 ATATGTGAGTATGTTTTCATACCATGTGACAGT
1 ATATGAGAGTATGTTTTCATACCATGTGACAGT
80567282 GATTATAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 17 0.57
36 13 0.43
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.36
Consensus pattern (35 bp):
ATATGAGAGTATGTTTTCATACCATGTGACAGTAA
Found at i:80570489 original size:30 final size:30
Alignment explanation
Indices: 80570452--80570734 Score: 182
Period size: 30 Copynumber: 9.4 Consensus size: 30
80570442 GGTCGTCACC
80570452 ATCCCTTTTCATAGTTTGATAGCTGAAGCT
1 ATCCCTTTTCATAGTTTGATAGCTGAAGCT
* * * * *
80570482 ATTCCTTTTCATATTTTTGAT-GGTCGTCA-CC
1 ATCCCTTTTCATA-GTTTGATAGCT-G-AAGCT
* *
80570513 ATCCCGTTTCATAGTTTGATAGCCGAAGCT
1 ATCCCTTTTCATAGTTTGATAGCTGAAGCT
* **
80570543 ATCCCTTTTCATAATTTGATAGCCAAAGCT
1 ATCCCTTTTCATAGTTTGATAGCTGAAGCT
** * * *
80570573 ATCCCTTTTCATAGTTCAATGGTCAT-CA-CC
1 ATCCCTTTTCATAGTTTGATAG-C-TGAAGCT
* * * *
80570603 ATCCCTTTCCATAGTTTGATGGTCAT-CA-CC
1 ATCCCTTTTCATAGTTTGATAG-C-TGAAGCT
* * **
80570633 ATCCCTTTTCATAATTTGACAGCCAAAGCT
1 ATCCCTTTTCATAGTTTGATAGCTGAAGCT
* * * *
80570663 ACCCCTTTTCATGGTTCGATAGCTGAAACT
1 ATCCCTTTTCATAGTTTGATAGCTGAAGCT
* **
80570693 ATCCCTTTTCATAGTTCGATAGCTGAATTT
1 ATCCCTTTTCATAGTTTGATAGCTGAAGCT
*
80570723 ATACCTTTTCAT
1 ATCCCTTTTCAT
80570735 TTGGTTGATA
Statistics
Matches: 199, Mismatches: 45, Indels: 18
0.76 0.17 0.07
Matches are distributed among these distances:
29 3 0.02
30 173 0.87
31 22 0.11
32 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.39
Consensus pattern (30 bp):
ATCCCTTTTCATAGTTTGATAGCTGAAGCT
Found at i:80570502 original size:90 final size:91
Alignment explanation
Indices: 80570349--80570674 Score: 379
Period size: 90 Copynumber: 3.6 Consensus size: 91
80570339 GTAAAATCAC
* * * * * * * * *
80570349 GATGGTTGACACCATCCCTTTCCATAATTCGATAGTCGAAGATATTCCTTTTTATATTTTTGATG
1 GATGGTCGTCACCATCCCTTTTCATAATTTGATAGCCAAAGCTATCCCTTTTCATATTTTTGATG
*
80570414 GCCGTCACCATCCCTTTTCATAG-TT
66 GTCGTCACCATCCCTTTTCATAGTTT
* ** *
80570439 GATGGTCGTCACCATCCCTTTTCATAGTTTGATAGCTGAAGCTATTCCTTTTCATATTTTTGATG
1 GATGGTCGTCACCATCCCTTTTCATAATTTGATAGCCAAAGCTATCCCTTTTCATATTTTTGATG
*
80570504 GTCGTCACCATCCCGTTTCATAGTTT
66 GTCGTCACCATCCCTTTTCATAGTTT
* * * * * **
80570530 GATAGCCG-AAGCTATCCCTTTTCATAATTTGATAGCCAAAGCTATCCCTTTTCATA-GTTCAAT
1 GATGGTCGTCA-CCATCCCTTTTCATAATTTGATAGCCAAAGCTATCCCTTTTCATATTTTTGAT
* *
80570593 GGTCATCACCATCCCTTTCCATAGTTT
65 GGTCGTCACCATCCCTTTTCATAGTTT
* * *
80570620 GATGGTCATCACCATCCCTTTTCATAATTTGACAGCCAAAGCTACCCCTTTTCAT
1 GATGGTCGTCACCATCCCTTTTCATAATTTGATAGCCAAAGCTATCCCTTTTCAT
80570675 GGTTCGATAG
Statistics
Matches: 201, Mismatches: 32, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
90 152 0.76
91 49 0.24
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.38
Consensus pattern (91 bp):
GATGGTCGTCACCATCCCTTTTCATAATTTGATAGCCAAAGCTATCCCTTTTCATATTTTTGATG
GTCGTCACCATCCCTTTTCATAGTTT
Found at i:80570513 original size:61 final size:61
Alignment explanation
Indices: 80570423--80570555 Score: 216
Period size: 61 Copynumber: 2.2 Consensus size: 61
80570413 GGCCGTCACC
* * *
80570423 ATCCCTTTTCATA--GTTGATGGTCGTCACCATCCCTTTTCATAGTTTGATAGCTGAAGCT
1 ATCCCTTTTCATATTTTTGATGGTCGTCACCATCCCGTTTCATAGTTTGATAGCCGAAGCT
*
80570482 ATTCCTTTTCATATTTTTGATGGTCGTCACCATCCCGTTTCATAGTTTGATAGCCGAAGCT
1 ATCCCTTTTCATATTTTTGATGGTCGTCACCATCCCGTTTCATAGTTTGATAGCCGAAGCT
80570543 ATCCCTTTTCATA
1 ATCCCTTTTCATA
80570556 ATTTGATAGC
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
59 12 0.18
61 55 0.82
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (61 bp):
ATCCCTTTTCATATTTTTGATGGTCGTCACCATCCCGTTTCATAGTTTGATAGCCGAAGCT
Found at i:80570697 original size:90 final size:90
Alignment explanation
Indices: 80570420--80570708 Score: 264
Period size: 90 Copynumber: 3.2 Consensus size: 90
80570410 GATGGCCGTC
* * * * ** *
80570420 ACCATCCCTTTTCATAG-TTGATGGTCGTCACCATCCCTTTTCATAGTTTGATAGCTGAAGCTAT
1 ACCATCCCTTTCCATAGTTTGATGGTCATCACCATCCCTTTTCATAATTTGACAGCCAAAGCTAC
* * ** * * *
80570484 TCCTTTTCATATTTTTGATGGTCGTC
66 CCCTTTTCATA-GTTCAATGCTCATA
* * * *
80570510 ACCATCCCGTTT-CATAGTTTGATAGCCGA--AGCTATCCCTTTTCATAATTTGATAGCCAAAGC
1 ACCATCCC-TTTCCATAGTTTGATGGTC-ATCA-CCATCCCTTTTCATAATTTGACAGCCAAAGC
* * *
80570572 TATCCCTTTTCATAGTTCAATGGTCATC
63 TACCCCTTTTCATAGTTCAATGCTCATA
80570600 ACCATCCCTTTCCATAGTTTGATGGTCATCACCATCCCTTTTCATAATTTGACAGCCAAAGCTAC
1 ACCATCCCTTTCCATAGTTTGATGGTCATCACCATCCCTTTTCATAATTTGACAGCCAAAGCTAC
* * *
80570665 CCCTTTTCATGGTTCGATAGCTGA-A
66 CCCTTTTCATAGTTCAAT-GCTCATA
* *
80570690 ACTATCCCTTTTCATAGTT
1 ACCATCCCTTTCCATAGTT
80570709 CGATAGCTGA
Statistics
Matches: 167, Mismatches: 24, Indels: 16
0.81 0.12 0.08
Matches are distributed among these distances:
89 4 0.02
90 109 0.65
91 54 0.32
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.38
Consensus pattern (90 bp):
ACCATCCCTTTCCATAGTTTGATGGTCATCACCATCCCTTTTCATAATTTGACAGCCAAAGCTAC
CCCTTTTCATAGTTCAATGCTCATA
Found at i:80570730 original size:90 final size:90
Alignment explanation
Indices: 80570510--80570734 Score: 240
Period size: 90 Copynumber: 2.5 Consensus size: 90
80570500 GATGGTCGTC
* * * * *
80570510 ACCATCCCGTTTCATAGTTTGATAGCCGAAGCTATCCCTTTTCATAATTTGATAGCCAAAGCTAT
1 ACCATCCCTTTTCATAGTTTGATAGCTGAATCTATCCCTTTTCATAATTTGACAGCCAAAGCTAC
* *
80570575 CCCTTTTCATAGTTCAATGGTCATC
66 CCCTTTTCATAGTTCAATGCTCATA
* * * *
80570600 ACCATCCCTTTCCATAGTTTGAT-GGT-CATCACCATCCCTTTTCATAATTTGACAGCCAAAGCT
1 ACCATCCCTTTTCATAGTTTGATAGCTGAAT--CTATCCCTTTTCATAATTTGACAGCCAAAGCT
* * *
80570663 ACCCCTTTTCATGGTTCGATAGCTGA-A
64 ACCCCTTTTCATAGTTCAAT-GCTCATA
* * * *
80570690 ACTATCCCTTTTCATAGTTCGATAGCTGAATTTATACCTTTTCAT
1 ACCATCCCTTTTCATAGTTTGATAGCTGAATCTATCCCTTTTCAT
80570735 TTGGTTGATA
Statistics
Matches: 108, Mismatches: 22, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
88 1 0.01
89 1 0.01
90 99 0.92
91 5 0.05
92 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.12, T:0.36
Consensus pattern (90 bp):
ACCATCCCTTTTCATAGTTTGATAGCTGAATCTATCCCTTTTCATAATTTGACAGCCAAAGCTAC
CCCTTTTCATAGTTCAATGCTCATA
Found at i:80580412 original size:42 final size:44
Alignment explanation
Indices: 80580335--80580474 Score: 123
Period size: 44 Copynumber: 3.2 Consensus size: 44
80580325 TCGCAGACGT
* *
80580335 GGTCTTACATGT-AATCAAATATCGATGCCACTGTCCTAAACAG
1 GGTCTTACACGTAAATCAAATATCGATGCCACTGTCCCAAACAG
* * * *
80580378 GGTCTTATACG-AAATCATATA-CGATGCCGA-TGTCCCAGACAT
1 GGTCTTACACGTAAATCAAATATCGATGCC-ACTGTCCCAAACAG
* *
80580420 GGTCTTACACGTAAATCACAAGT-T-GAAGCCAAC-GTCCCAAACAT
1 GGTCTTACACGTAAATCA-AA-TATCGATGCC-ACTGTCCCAAACAG
80580464 GGTCTTACACG
1 GGTCTTACACG
80580475 ATATCACATC
Statistics
Matches: 79, Mismatches: 11, Indels: 13
0.77 0.11 0.13
Matches are distributed among these distances:
42 26 0.33
43 24 0.30
44 28 0.35
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (44 bp):
GGTCTTACACGTAAATCAAATATCGATGCCACTGTCCCAAACAG
Found at i:80588895 original size:43 final size:42
Alignment explanation
Indices: 80588834--80588947 Score: 156
Period size: 43 Copynumber: 2.7 Consensus size: 42
80588824 GGAATTTAGT
80588834 AATCTGAGCTCGTTGAGTGGTCCGAGTTCGTGATATATGTGAG
1 AATCTGAGCTCGTTGAGTGGTCCGAGTTCGTGATATATGTG-G
* * * *
80588877 AATCTGAACTTGTTGAGTGGTCCAAGTTTGTGATATATGTGG
1 AATCTGAGCTCGTTGAGTGGTCCGAGTTCGTGATATATGTGG
* * *
80588919 CATCTGAGCTCGCTGAGAGGTCCGAGTTC
1 AATCTGAGCTCGTTGAGTGGTCCGAGTTC
80588948 ATAACGGATG
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
42 23 0.38
43 37 0.62
ACGTcount: A:0.21, C:0.16, G:0.31, T:0.32
Consensus pattern (42 bp):
AATCTGAGCTCGTTGAGTGGTCCGAGTTCGTGATATATGTGG
Found at i:80589287 original size:19 final size:19
Alignment explanation
Indices: 80589263--80589300 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
80589253 TATGATAAGT
80589263 AAGCCAAAAAGGGTATGAA
1 AAGCCAAAAAGGGTATGAA
80589282 AAGCCAAAAAGGGTATGAA
1 AAGCCAAAAAGGGTATGAA
80589301 TGATGAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.11, G:0.26, T:0.11
Consensus pattern (19 bp):
AAGCCAAAAAGGGTATGAA
Found at i:80597048 original size:19 final size:19
Alignment explanation
Indices: 80597012--80597050 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
80597002 TTTTCATCAT
*
80597012 AGTAAAATAAAATAATAAA
1 AGTAAAATAAAACAATAAA
*
80597031 AGTAAAATAAAACCATAAA
1 AGTAAAATAAAACAATAAA
80597050 A
1 A
80597051 ATAATTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.18
Consensus pattern (19 bp):
AGTAAAATAAAACAATAAA
Found at i:80597598 original size:28 final size:27
Alignment explanation
Indices: 80597512--80597601 Score: 92
Period size: 27 Copynumber: 3.2 Consensus size: 27
80597502 GTGACAGAGT
* *
80597512 CACCAGATATAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
80597541 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
80597568 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
80597596 CACCAG
1 CACCAG
80597602 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 23 0.45
28 21 0.41
29 7 0.14
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:80597753 original size:28 final size:28
Alignment explanation
Indices: 80597706--80597770 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
80597696 AAATTAACCC
*
80597706 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
80597734 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
80597762 TAGGGGTAT
1 TAGGGGTAT
80597771 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:80604671 original size:19 final size:19
Alignment explanation
Indices: 80604635--80604673 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
80604625 TTTTCATCAT
* *
80604635 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
80604654 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
80604673 A
1 A
80604674 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:80605177 original size:28 final size:27
Alignment explanation
Indices: 80605135--80605224 Score: 103
Period size: 28 Copynumber: 3.2 Consensus size: 27
80605125 ATGACAGAGT
80605135 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
**
80605164 CACCAGAACAGATATACGTGGCAAG-GC
1 CACCAGAACAGATATTTGTGGC-AGTGC
80605191 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
80605219 CACCAG
1 CACCAG
80605225 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
27 22 0.42
28 24 0.45
29 7 0.13
ACGTcount: A:0.33, C:0.24, G:0.23, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:80605192 original size:27 final size:28
Alignment explanation
Indices: 80605135--80605204 Score: 90
Period size: 27 Copynumber: 2.5 Consensus size: 28
80605125 ATGACAGAGT
**
80605135 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATATTACGTGGCAGTGC
80605164 CACCAGAACAGATA-TACGTGGCAAG-GC
1 CACCAGAACAGATATTACGTGGC-AGTGC
80605191 CACCAGAACAGATA
1 CACCAGAACAGATA
80605205 ATTTGTGGCA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
27 22 0.58
28 9 0.24
29 7 0.18
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.17
Consensus pattern (28 bp):
CACCAGAACAGATATTACGTGGCAGTGC
Found at i:80605377 original size:28 final size:28
Alignment explanation
Indices: 80605330--80605394 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
80605320 AAATTAACCC
*
80605330 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
80605358 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
80605386 TAGGGGTAT
1 TAGGGGTAT
80605395 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:80608328 original size:25 final size:25
Alignment explanation
Indices: 80608300--80608366 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
80608290 GAATCAAAAT
80608300 CAGAATTAGAATCAGAATTAGGTAA
1 CAGAATTAGAATCAGAATTAGGTAA
* *
80608325 CAGAATCAGAATCAGTATTAGGTAA
1 CAGAATTAGAATCAGAATTAGGTAA
*
80608350 TAGAATTAGAATCAGAA
1 CAGAATTAGAATCAGAA
80608367 CCAGAATCAG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.48, C:0.09, G:0.19, T:0.24
Consensus pattern (25 bp):
CAGAATTAGAATCAGAATTAGGTAA
Found at i:80608334 original size:6 final size:6
Alignment explanation
Indices: 80608249--80608410 Score: 93
Period size: 6 Copynumber: 26.3 Consensus size: 6
80608239 AAGAAACATT
* * * *
80608249 ATCAGA A-CTAGA ATTAGA ATCAGA ACCAGA ATCAG- GTGACAGA ATCAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
80608298 ATCAGA ATTAGA ATCAGA ATTAGGTA A-CAGA ATCAGA ATCAGT ATTAGGTA
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCA-G-A
* *
80608349 AT-AGA ATTAGA ATCAGA ACCAGA ATCAGA ATCAGTA A-CAGGTA A-CAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAG-A ATCA-G-A ATCAGA
*
80608397 ATCAGA ATTAGA AT
1 ATCAGA ATCAGA AT
80608411 GTGAATGGAA
Statistics
Matches: 123, Mismatches: 19, Indels: 28
0.72 0.11 0.16
Matches are distributed among these distances:
5 9 0.07
6 94 0.76
7 15 0.12
8 5 0.04
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:80608345 original size:37 final size:37
Alignment explanation
Indices: 80608258--80608379 Score: 124
Period size: 37 Copynumber: 3.3 Consensus size: 37
80608248 TATCAGAACT
* * * * *
80608258 AGAATTAGAATCAGAACCAGAATCAGGTGACAGAATC
1 AGAATCAGAATTAGAATCAGAATTAGGTAACAGAATC
*
80608295 AAAATCAGAATTAGAATCAGAATTAGGTAACAGAATC
1 AGAATCAGAATTAGAATCAGAATTAGGTAACAGAATC
* *
80608332 AGAATCAGTATTAGGTAAT-AGAATTA-G-AATCAGAACC
1 AGAATCAGAATTA-G-AATCAGAATTAGGTAA-CAGAATC
80608369 AGAATCAGAAT
1 AGAATCAGAAT
80608380 CAGTAACAGG
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
36 2 0.03
37 59 0.82
38 8 0.11
39 3 0.04
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.20
Consensus pattern (37 bp):
AGAATCAGAATTAGAATCAGAATTAGGTAACAGAATC
Found at i:80608372 original size:43 final size:43
Alignment explanation
Indices: 80608307--80608409 Score: 127
Period size: 43 Copynumber: 2.4 Consensus size: 43
80608297 AATCAGAATT
* ** *
80608307 AGAATCAGAATTAGGTAA-CAGAATCAGAATCAGTATTAGGTAAT
1 AGAATCAGAATCA-G-AACCAGAATCAGAATCAGTAACAGGTAAC
*
80608351 AGAATTAGAATCAGAACCAGAATCAGAATCAGTAACAGGTAAC
1 AGAATCAGAATCAGAACCAGAATCAGAATCAGTAACAGGTAAC
*
80608394 AGAATCAGAATTAGAA
1 AGAATCAGAATCAGAA
80608410 TGTGAATGGA
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 2 0.04
43 38 0.75
44 11 0.22
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.20
Consensus pattern (43 bp):
AGAATCAGAATCAGAACCAGAATCAGAATCAGTAACAGGTAAC
Found at i:80608577 original size:27 final size:26
Alignment explanation
Indices: 80608529--80608588 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
80608519 GCGAGGCTGC
*
80608529 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
80608556 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
80608582 CAGATAT
1 CAGATAT
80608589 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:80608955 original size:27 final size:27
Alignment explanation
Indices: 80608925--80609176 Score: 253
Period size: 27 Copynumber: 9.3 Consensus size: 27
80608915 GGGGTAAAAT
* *
80608925 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
80608952 GGTAATTCTACCTTA-TAGGAGTATTTC
1 GGTAATTTTACCCTACAAGG-GTATTTC
* *
80608979 AGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
80609006 GGT-ATTTCAACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * *
80609033 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * *
80609060 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
*
80609087 GGT-ATTTCTACCCTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
80609114 AGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
80609141 GG-CATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
80609168 GATAATTTT
1 GGTAATTTT
80609177 GTAAATCGAG
Statistics
Matches: 192, Mismatches: 26, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
26 10 0.05
27 173 0.90
28 9 0.05
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:80608985 original size:54 final size:54
Alignment explanation
Indices: 80608925--80609174 Score: 290
Period size: 54 Copynumber: 4.6 Consensus size: 54
80608915 GGGGTAAAAT
* * * * *
80608925 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCTTA-TAGGAGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGG-GTATTTC
* * *
80608979 AGTAATTTTACCCTACAGGGGTATTTCGGTATTTCAACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
* ** * *
80609033 GGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
* *
80609087 GGT-ATTTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
* * *
80609141 GG-CATTTCTACCCTACAAGGGTATTTCGATAATT
1 GGTAATTT-TACCCTACAGGGGTATTTCGGTAATT
80609175 TTGTAAATCG
Statistics
Matches: 168, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
53 3 0.02
54 162 0.96
55 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (54 bp):
GGTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
Found at i:80609057 original size:81 final size:81
Alignment explanation
Indices: 80608934--80609168 Score: 310
Period size: 81 Copynumber: 2.9 Consensus size: 81
80608924 TGGTAATTTT
* * * * *
80608934 ACCCCACAAGGGTATCTCGGTAATTCTACCTTATAGGAGTATTTCAGTAATTTTACCCTACAGGG
1 ACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACCCTACAGGG
80608999 GTATTTCGGTATTTCA
66 GTATTTCGGTATTTCA
* *
80609015 ACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGG
1 ACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACCCTACAGGG
* *
80609080 GTATTTTGGTATTTCT
66 GTATTTCGGTATTTCA
* * * * ** *
80609096 ACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTC-GGCATTTCTACCCTACAAG
1 ACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTT-TACCCTACAGG
80609160 GGTATTTCG
65 GGTATTTCG
80609169 ATAATTTTGT
Statistics
Matches: 134, Mismatches: 19, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
80 4 0.03
81 130 0.97
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (81 bp):
ACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACCCTACAGGG
GTATTTCGGTATTTCA
Found at i:80609188 original size:27 final size:26
Alignment explanation
Indices: 80609158--80609423 Score: 115
Period size: 27 Copynumber: 9.9 Consensus size: 26
80609148 CTACCCTACA
**
80609158 AGGGTATTTCGATAATTTTGTAAATCG
1 AGGGTATTTC-ATAATTTTACAAATCG
*** * ** *
80609185 AGGGTAAAACAGTAATTCTGTAAATCA
1 AGGGTATTTCA-TAATTTTACAAATCG
** *
80609212 AGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTA-TTTCATAATTTTACAAATCG
*
80609239 AGGGTATTTCAATAATTTTACAAGTCG
1 AGGGTATTTC-ATAATTTTACAAATCG
* * **
80609266 AGAGTATTTCAGTAATTTCACAAATTA
1 AGGGTATTTCA-TAATTTTACAAATCG
** *
80609293 AGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGTA-TTTCATAATTTTACAAATCG
* *
80609319 AGAGGTATTTTGATAATTTTACAAA-CT
1 AG-GGTA-TTTCATAATTTTACAAATCG
** * *
80609346 AGGGGTATTTTGGTAATTTCACAAAT-T
1 A-GGGTA-TTTCATAATTTTACAAATCG
** * * *
80609373 AGGGGTATTTGGTAATTTTATAAACCA
1 A-GGGTATTTCATAATTTTACAAATCG
*
80609400 AGGGTATTTTAGTAATTTTACAAA
1 AGGGTATTTCA-TAATTTTACAAA
80609424 CTAAGGGTAT
Statistics
Matches: 191, Mismatches: 38, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
26 30 0.16
27 157 0.82
28 4 0.02
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (26 bp):
AGGGTATTTCATAATTTTACAAATCG
Found at i:80609243 original size:81 final size:80
Alignment explanation
Indices: 80609158--80609423 Score: 207
Period size: 81 Copynumber: 3.3 Consensus size: 80
80609148 CTACCCTACA
** * **
80609158 AGGGTATTTCGATAATTTTGTAAATCGAGGGTAAAACAGTAA-TTCTGTAAATCAAGGGTACTTT
1 AGGGTATTTCGATAATTTTACAAATCGAGAGTAAAACAGTAATTTC-ACAAATCAAGGGTACTTT
*
80609222 GGTAATTTTACAAGTCG
65 GGTAATTTTACAA-ACG
* * *** * *
80609239 AGGGTATTTCAATAATTTTACAAGTCGAGAGTATTTCAGTAATTTCACAAATTAAGGGTATTTTG
1 AGGGTATTTCGATAATTTTACAAATCGAGAGTAAAACAGTAATTTCACAAATCAAGGGTACTTTG
*
80609304 GTAATTTTACAAACT
66 GTAATTTTACAAACG
* * * ***** * *
80609319 AGAGGTATTTTGATAATTTTACAAA-CTAGGGGTATTTTGGTAATTTCACAAATTAGGGGTA-TT
1 AG-GGTATTTCGATAATTTTACAAATCGA-GAGTAAAACAGTAATTTCACAAATCAAGGGTACTT
* *
80609382 TGGTAATTTTATAAACCA
64 TGGTAATTTTACAAA-CG
*
80609400 AGGGTATTT-TAGTAATTTTACAAA
1 AGGGTATTTCGA-TAATTTTACAAA
80609424 CTAAGGGTAT
Statistics
Matches: 155, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
79 1 0.01
80 40 0.26
81 111 0.72
82 3 0.02
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (80 bp):
AGGGTATTTCGATAATTTTACAAATCGAGAGTAAAACAGTAATTTCACAAATCAAGGGTACTTTG
GTAATTTTACAAACG
Found at i:80609424 original size:27 final size:27
Alignment explanation
Indices: 80609210--80609497 Score: 256
Period size: 27 Copynumber: 10.7 Consensus size: 27
80609200 TTCTGTAAAT
* **
80609210 CAAGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *** **
80609237 CGAGGGTATTTCAATAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * ** * *
80609264 CGAGAGTATTTCAGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
80609291 TAAGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
80609317 CTAGAGGTATTTTGATAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAAC
* * * *
80609345 TAGGGGTATTTTGGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * *
80609372 TAGGGGTA-TTTGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
80609398 CAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * *
80609425 TAAGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
80609452 CAAGGGTATTTTAGAAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
80609479 TAGGGGTATTTTGGTAATT
1 CAAGGGTATTTTGGTAATT
80609498 GGTAAACTAA
Statistics
Matches: 214, Mismatches: 44, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
26 23 0.11
27 190 0.89
28 1 0.00
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:80614020 original size:43 final size:43
Alignment explanation
Indices: 80613972--80614058 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
80613962 TGTGACTTAG
80613972 TCGTATAAAAAGTTTCTAACCTTTTCCACAAGGAAAATAAGGT
1 TCGTATAAAAAGTTTCTAACCTTTTCCACAAGGAAAATAAGGT
80614015 TCGTATAAAAAGTTTCTAACCTTTTCCACAAGGAAAATAAGGT
1 TCGTATAAAAAGTTTCTAACCTTTTCCACAAGGAAAATAAGGT
80614058 T
1 T
80614059 TTCTCCATCA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (43 bp):
TCGTATAAAAAGTTTCTAACCTTTTCCACAAGGAAAATAAGGT
Found at i:80615936 original size:60 final size:60
Alignment explanation
Indices: 80615843--80615964 Score: 235
Period size: 60 Copynumber: 2.0 Consensus size: 60
80615833 TAATTGAGAT
*
80615843 ACGAATTCCATTGTTGCTAGTAAAGCCATGCCATATACAAGTCATGTACCTAACATACCG
1 ACGAATTCCATTGTTGCTAGTAAAGCCATGCCATATACAAGTCATGTACCCAACATACCG
80615903 ACGAATTCCATTGTTGCTAGTAAAGCCATGCCATATACAAGTCATGTACCCAACATACCG
1 ACGAATTCCATTGTTGCTAGTAAAGCCATGCCATATACAAGTCATGTACCCAACATACCG
80615963 AC
1 AC
80615965 TATGGGCTCG
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (60 bp):
ACGAATTCCATTGTTGCTAGTAAAGCCATGCCATATACAAGTCATGTACCCAACATACCG
Found at i:80620123 original size:14 final size:14
Alignment explanation
Indices: 80620104--80620137 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
80620094 TTGGGGATTA
80620104 AGTGTTAATAAGAG
1 AGTGTTAATAAGAG
80620118 AGTGTTAATAAGAG
1 AGTGTTAATAAGAG
*
80620132 GGTGTT
1 AGTGTT
80620138 TAACCTTAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.32, T:0.32
Consensus pattern (14 bp):
AGTGTTAATAAGAG
Found at i:80620731 original size:27 final size:27
Alignment explanation
Indices: 80620701--80621155 Score: 393
Period size: 27 Copynumber: 17.0 Consensus size: 27
80620691 CCCCACAGGG
80620701 TAAAATGACTGTTTTGCCCTTATGTGT
1 TAAAATGACTGTTTTGCCCTTATGTGT
* *
80620728 TAAAGTGAC-GATTTTGCCCATATGTGT
1 TAAAATGACTG-TTTTGCCCTTATGTGT
*
80620755 TAAAATGAC-GATTTTGCCCTTATGTGA
1 TAAAATGACTG-TTTTGCCCTTATGTGT
* * * *
80620782 TAAAATGACGGTTTT-ACCGTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGT
* * *
80620808 CAAAATGACTGTTTTACCCTTATTTGT
1 TAAAATGACTGTTTTGCCCTTATGTGT
* * *
80620835 CAAAATAACTTTTTTGCCCTTATGTGT
1 TAAAATGACTGTTTTGCCCTTATGTGT
* ** *
80620862 TAAAATTACAATTTTGCCCTTATGTGA
1 TAAAATGACTGTTTTGCCCTTATGTGT
*
80620889 TAAAATGAC-GATTTTGCCCTTATGTGG
1 TAAAATGACTG-TTTTGCCCTTATGTGT
* * * *
80620916 CAAAATTACTATTTTGCGC-T-TGTGT
1 TAAAATGACTGTTTTGCCCTTATGTGT
* *
80620941 CAAAATGGCTGTTTTGCCCTTATGTGT
1 TAAAATGACTGTTTTGCCCTTATGTGT
** * *
80620968 TAAAATGACAATTTTGCCCTCATGTGA
1 TAAAATGACTGTTTTGCCCTTATGTGT
* * * *
80620995 TAAAATGACAGTTTTGCCCTTTTATGG
1 TAAAATGACTGTTTTGCCCTTATGTGT
* *
80621022 CAAAATGAATGTTTTGCCCTTATGTGT
1 TAAAATGACTGTTTTGCCCTTATGTGT
* *
80621049 TAAAATGA-TAGATTTGCCCTTATGTGG
1 TAAAATGACT-GTTTTGCCCTTATGTGT
** * * * *
80621076 TAAAATGACAATTTTTCCCATATGAGG
1 TAAAATGACTGTTTTGCCCTTATGTGT
* *
80621103 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGT
** * *
80621130 TAGGATGACTGTTTTTCCCCTATGTG
1 TAAAATGACTGTTTTGCCCTTATGTG
80621156 ATGTATGTTT
Statistics
Matches: 349, Mismatches: 70, Indels: 18
0.80 0.16 0.04
Matches are distributed among these distances:
25 19 0.05
26 25 0.07
27 304 0.87
28 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.40
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGTGT
Found at i:80620812 original size:26 final size:26
Alignment explanation
Indices: 80620756--80620825 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 26
80620746 CATATGTGTT
* * * *
80620756 AAAATGACGATTTTGCCCTTATGTGAT
1 AAAATGACGGTTTT-ACCGTATGTGAC
*
80620783 AAAATGACGGTTTTACCGTATGTGGC
1 AAAATGACGGTTTTACCGTATGTGAC
*
80620809 AAAATGACTGTTTTACC
1 AAAATGACGGTTTTACC
80620826 CTTATTTGTC
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
26 24 0.65
27 13 0.35
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (26 bp):
AAAATGACGGTTTTACCGTATGTGAC
Found at i:80621539 original size:18 final size:18
Alignment explanation
Indices: 80621478--80621552 Score: 62
Period size: 18 Copynumber: 4.1 Consensus size: 18
80621468 AGGACTTGCA
*
80621478 TACTGTTTACTGTTATTG
1 TACTGTTTACTGTTACTG
* * *
80621496 CATAATG-TTACTGCTGCTG
1 --TACTGTTTACTGTTACTG
* * *
80621515 CACTGTTTAGTGTTATTG
1 TACTGTTTACTGTTACTG
80621533 TACTGTTTACTGTTACTG
1 TACTGTTTACTGTTACTG
80621551 TA
1 TA
80621553 ATGGGCCAAG
Statistics
Matches: 41, Mismatches: 13, Indels: 4
0.71 0.22 0.07
Matches are distributed among these distances:
17 3 0.07
18 25 0.61
19 9 0.22
20 4 0.10
ACGTcount: A:0.19, C:0.15, G:0.19, T:0.48
Consensus pattern (18 bp):
TACTGTTTACTGTTACTG
Found at i:80624293 original size:24 final size:24
Alignment explanation
Indices: 80624263--80624330 Score: 100
Period size: 24 Copynumber: 2.8 Consensus size: 24
80624253 GTGAAACTGC
80624263 AAAGGCTGAAAAGCCGAAAACCCG
1 AAAGGCTGAAAAGCCGAAAACCCG
* **
80624287 AACGGCTGAAAAGCCGAAAAGTCG
1 AAAGGCTGAAAAGCCGAAAACCCG
*
80624311 AAAGGTTGAAAAGCCGAAAA
1 AAAGGCTGAAAAGCCGAAAA
80624331 ATCAGTTTTC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.47, C:0.19, G:0.26, T:0.07
Consensus pattern (24 bp):
AAAGGCTGAAAAGCCGAAAACCCG
Found at i:80624305 original size:8 final size:8
Alignment explanation
Indices: 80624270--80624330 Score: 50
Period size: 8 Copynumber: 7.6 Consensus size: 8
80624260 TGCAAAGGCT
80624270 GAAAAGCC
1 GAAAAGCC
*
80624278 GAAAACCC
1 GAAAAGCC
** *
80624286 GAACGGCT
1 GAAAAGCC
80624294 GAAAAGCC
1 GAAAAGCC
*
80624302 GAAAAGTC
1 GAAAAGCC
* **
80624310 GAAAGGTT
1 GAAAAGCC
80624318 GAAAAGCC
1 GAAAAGCC
80624326 GAAAA
1 GAAAA
80624331 ATCAGTTTTC
Statistics
Matches: 39, Mismatches: 14, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
8 39 1.00
ACGTcount: A:0.48, C:0.20, G:0.26, T:0.07
Consensus pattern (8 bp):
GAAAAGCC
Found at i:80624777 original size:27 final size:27
Alignment explanation
Indices: 80624747--80625171 Score: 282
Period size: 27 Copynumber: 16.0 Consensus size: 27
80624737 TCCCATAGGG
*
80624747 TAAAATGACTATTTTGCCCTTATATGT
1 TAAAATGACTATTTTGCCCTTATGTGT
**
80624774 TAAAATGAAGATTTT-CCCTTATGTGT
1 TAAAATGACTATTTTGCCCTTATGTGT
* *
80624800 TAAAATGA-TGATTTTGCCCGTATGTGA
1 TAAAATGACT-ATTTTGCCCTTATGTGT
** *
80624827 TAAAATGA-TGGTTT-CGCC--ATGTGG
1 TAAAATGACTATTTTGC-CCTTATGTGT
* * * * *
80624851 CAAAATGACTATTTTTCCGTTATATTT
1 TAAAATGACTATTTTGCCCTTATGTGT
*
80624878 TAAAATGA-TGATTTTGCCCTTATGTGA
1 TAAAATGACT-ATTTTGCCCTTATGTGT
** * * *
80624905 TAAAATGACGGTTTTTCCCTTATATGG
1 TAAAATGACTATTTTGCCCTTATGTGT
* * * *
80624932 CAAAATGAATGTTTTACCCTTATGTGT
1 TAAAATGACTATTTTGCCCTTATGTGT
* *
80624959 CAAAATGACTGTTTTTG-CCTTATGTGT
1 TAAAATGACT-ATTTTGCCCTTATGTGT
* * * * *
80624986 TAACATAACGATTTTTCCCTTATGTGA
1 TAAAATGACTATTTTGCCCTTATGTGT
* * * *
80625013 TAAAATGACAATTTTTCCTTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGT
* * *
80625040 CAAAATGATTGTTTTG-CCTT-TGTGT
1 TAAAATGACTATTTTGCCCTTATGTGT
* *
80625065 TAAAATGACGGA-TTTGCCCTTATGTGA
1 TAAAATGAC-TATTTTGCCCTTATGTGT
* * *
80625092 TAAAATGACAATCTTT-CCCTTATGAGG
1 TAAAATGACTAT-TTTGCCCTTATGTGT
*
80625119 TAAAATGACTAATTTT-CCCTTATGTGG
1 TAAAATGACT-ATTTTGCCCTTATGTGT
** *
80625146 TAGGATGACTATTTTGCCCCTATGTG
1 TAAAATGACTATTTTGCCCTTATGTG
80625172 ATGTATGTTT
Statistics
Matches: 312, Mismatches: 68, Indels: 36
0.75 0.16 0.09
Matches are distributed among these distances:
24 12 0.04
25 21 0.07
26 47 0.15
27 223 0.71
28 9 0.03
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGTGT
Found at i:80625161 original size:106 final size:107
Alignment explanation
Indices: 80624894--80625163 Score: 285
Period size: 106 Copynumber: 2.5 Consensus size: 107
80624884 GATGATTTTG
* ** * * * *
80624894 CCCTTATGTGATAAAATGACGGTTTTTCCCTTATATGGCAAAATGAATGTTTTACCCTTATGTGT
1 CCCTTATGAGATAAAATGACAATTTTTCCCTTATGTGGCAAAATGACTATTTT-GCCTTATGTGT
** * * * *
80624959 CAAAATGACTGTTTTTGCCTTATGTGTTAACATAACGATTTTT
65 CAAAATGACTGGATTTGCCTTATGTGATAAAATAACAATCTTT
* * * * *
80625002 CCCTTATGTGATAAAATGACAATTTTTCCTTTATGTGGCAAAATGATTGTTTTGCCTT-TGTGTT
1 CCCTTATGAGATAAAATGACAATTTTTCCCTTATGTGGCAAAATGACTATTTTGCCTTATGTGTC
*
80625066 AAAATGAC-GGATTTGCCCTTATGTGATAAAATGACAATCTTT
66 AAAATGACTGGATTTG-CCTTATGTGATAAAATAACAATCTTT
* * **
80625108 CCCTTATGAGGTAAAATGACTAA-TTTTCCCTTATGTGGTAGGATGACTATTTTGCC
1 CCCTTATGAGATAAAATGAC-AATTTTTCCCTTATGTGGCAAAATGACTATTTTGCC
80625164 CCTATGTGAT
Statistics
Matches: 138, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
105 5 0.04
106 79 0.57
107 6 0.04
108 48 0.35
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (107 bp):
CCCTTATGAGATAAAATGACAATTTTTCCCTTATGTGGCAAAATGACTATTTTGCCTTATGTGTC
AAAATGACTGGATTTGCCTTATGTGATAAAATAACAATCTTT
Found at i:80627848 original size:180 final size:180
Alignment explanation
Indices: 80627541--80627900 Score: 612
Period size: 180 Copynumber: 2.0 Consensus size: 180
80627531 AAATCATATT
** * * *
80627541 CTTGTATTTAAAGTACATTTTCATAATAATTTGTCCCGAGTTCAGACTATTTCATGTCGGAAGTT
1 CTTGTATTTAAAGTACATTTTCATAATAATTCATCCCGAGTTCAAACTATTTCATGTCAGAACTT
* * *
80627606 TGCCCATTAAATCATTTGAAATGTTAGTGTCACACAGGTAGTACGCTAAAGGTGTTCAAATCTAT
66 TGCCCATTAAATCATTTGAAATGTCAGTGTCACACAGGTAGTACACTAAAGGTGTACAAATCTAT
80627671 GATCATGGATGACCATATTCATCAAGTAAATTCCATGTTCATATATCATC
131 GATCATGGATGACCATATTCATCAAGTAAATTCCATGTTCATATATCATC
*
80627721 CTTGTATTTAAAGTACATTTTCATAATAATTCATCTCGAGTTCAAACTATTTCATGTCAGAACTT
1 CTTGTATTTAAAGTACATTTTCATAATAATTCATCCCGAGTTCAAACTATTTCATGTCAGAACTT
* * *
80627786 TTCCCATTAAATCATTTGAAATGTCAGTGTCACACAGGTAGTACATTCAAGGTGTACAAATCTAT
66 TGCCCATTAAATCATTTGAAATGTCAGTGTCACACAGGTAGTACACTAAAGGTGTACAAATCTAT
80627851 GATCATGGATGACCATATTCATCAAGTAAATTCCATGTTCATATATCATC
131 GATCATGGATGACCATATTCATCAAGTAAATTCCATGTTCATATATCATC
80627901 ATCTCATATT
Statistics
Matches: 168, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
180 168 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (180 bp):
CTTGTATTTAAAGTACATTTTCATAATAATTCATCCCGAGTTCAAACTATTTCATGTCAGAACTT
TGCCCATTAAATCATTTGAAATGTCAGTGTCACACAGGTAGTACACTAAAGGTGTACAAATCTAT
GATCATGGATGACCATATTCATCAAGTAAATTCCATGTTCATATATCATC
Found at i:80628152 original size:25 final size:25
Alignment explanation
Indices: 80628124--80628171 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
80628114 AACCCTCTCT
80628124 TGAGCCAAATAACAGGAAGCTCAGG
1 TGAGCCAAATAACAGGAAGCTCAGG
** *
80628149 TGAGCCATGTAACGGGAAGCTCA
1 TGAGCCAAATAACAGGAAGCTCA
80628172 TAGGAGCTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.21, G:0.29, T:0.15
Consensus pattern (25 bp):
TGAGCCAAATAACAGGAAGCTCAGG
Found at i:80628302 original size:23 final size:23
Alignment explanation
Indices: 80628257--80628307 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
80628247 CGGATAACCA
*
80628257 AATATCGGGAAGTTCAAGCGAGC
1 AATATCGGGAAGTTCAAGAGAGC
*
80628280 AATATCTGGAAGCTTC-AGAGAGC
1 AATATCGGGAAG-TTCAAGAGAGC
*
80628303 CATAT
1 AATAT
80628308 AATAGGGCGC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 21 0.88
24 3 0.12
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (23 bp):
AATATCGGGAAGTTCAAGAGAGC
Found at i:80644005 original size:20 final size:20
Alignment explanation
Indices: 80643968--80644005 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
80643958 ATAATTTTCA
*
80643968 TTTTTTTTCATGTTCAAGTT
1 TTTTTTTTCATGTACAAGTT
80643988 TTTTTATTTCAT-TACAAG
1 TTTTT-TTTCATGTACAAG
80644006 ATTTCTTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.21, C:0.11, G:0.08, T:0.61
Consensus pattern (20 bp):
TTTTTTTTCATGTACAAGTT
Found at i:80644014 original size:21 final size:21
Alignment explanation
Indices: 80643973--80644014 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
80643963 TTTCATTTTT
* *
80643973 TTTCATGTTCAAGTTTTTTTA
1 TTTCATGTACAAGTTTCTTTA
80643994 TTTCAT-TACAAGATTTCTTTA
1 TTTCATGTACAAG-TTTCTTTA
80644015 CTCCATTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.24, C:0.12, G:0.07, T:0.57
Consensus pattern (21 bp):
TTTCATGTACAAGTTTCTTTA
Found at i:80646625 original size:39 final size:39
Alignment explanation
Indices: 80646566--80646786 Score: 343
Period size: 39 Copynumber: 5.6 Consensus size: 39
80646556 TCGATTGATA
**
80646566 ACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTCT
1 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTCT
*
80646605 ACCGGGCTAAGTCCCAAAGGCATTTATGCGAGTTATTCT
1 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTCT
80646644 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTCT
1 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTCT
*
80646683 ACCGGGCTAAGTCTCGAAGGCATTTATGCGAGTTATTCT
1 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTCT
* * * * * *
80646722 ACCGGGCTAAGTCCCAAACGCATTTGTGCGAGTCACTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTCT
80646761 AACCGGGCTAAGTCCCGAAGGCATTT
1 -ACCGGGCTAAGTCCCGAAGGCATTT
80646787 GAGCTAGTGG
Statistics
Matches: 167, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 144 0.86
40 23 0.14
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.26
Consensus pattern (39 bp):
ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTCT
Found at i:80653951 original size:2 final size:2
Alignment explanation
Indices: 80653944--80653969 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
80653934 GCTCTTGCAC
80653944 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
80653970 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80654731 original size:39 final size:39
Alignment explanation
Indices: 80654675--80654934 Score: 412
Period size: 39 Copynumber: 6.6 Consensus size: 39
80654665 TCGATTGATA
* **
80654675 ACCGGGCTAAGTACCGAAGGCATTCGTGCGAGTTATTCT
1 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTCT
*
80654714 ACCGGGCTAAGTCCCGAAGGCATTTATACGAGTTATTCT
1 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTCT
80654753 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTCT
1 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTCT
80654792 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTCT
1 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTCT
*
80654831 ACCGGGCTAAGTCTCGAAGGCATTTATGCGAGTTATTCT
1 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTCT
* * * *
80654870 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTCT
**
80654909 AACCAAGCTAAGTCCCGAAGGCATTT
1 -ACCGGGCTAAGTCCCGAAGGCATTT
80654935 GAGCTAGTGG
Statistics
Matches: 207, Mismatches: 13, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
39 184 0.89
40 23 0.11
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (39 bp):
ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTCT
Found at i:80662663 original size:29 final size:29
Alignment explanation
Indices: 80662629--80662686 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
80662619 CCAGCTGGTA
80662629 TGTGTTCAGATGACGCAGATCCAGCTTGG
1 TGTGTTCAGATGACGCAGATCCAGCTTGG
80662658 TGTGTTCAGATGACGCAGATCCAGCTTGG
1 TGTGTTCAGATGACGCAGATCCAGCTTGG
80662687 GTGCTACCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.28
Consensus pattern (29 bp):
TGTGTTCAGATGACGCAGATCCAGCTTGG
Found at i:80675386 original size:96 final size:96
Alignment explanation
Indices: 80675222--80675434 Score: 293
Period size: 96 Copynumber: 2.2 Consensus size: 96
80675212 ATTGATATGT
** * * *
80675222 CCATGTCTGGGACATGGCATTGGCCACATTATGAAAGCCAGTGTAAGACCATGTTTGGGACATGG
1 CCATGTCTGGGACATGGCATCAGCCACATCATGAAAGCCAGTGTAAGACCATGTCTAGGACATGG
80675287 CATCAACATTGAGACGAGAGCTAGTGTAAGA
66 CATCAACATTGAGACGAGAGCTAGTGTAAGA
* ** *
80675318 CCATGTCTGGGACATGGCATCAGCCTCGA-CATGTGAGCCAGTGTAAGACCATGTCTAGTACATG
1 CCATGTCTGGGACATGGCATCAGCCAC-ATCATGAAAGCCAGTGTAAGACCATGTCTAGGACATG
***
80675382 GCATCGGTATTGAGACGAGAGCTAGTGTAAGA
65 GCATCAACATTGAGACGAGAGCTAGTGTAAGA
*
80675414 CCATTTCTGGGACATGGCATC
1 CCATGTCTGGGACATGGCATC
80675435 GATTTTGACT
Statistics
Matches: 103, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
96 102 0.99
97 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (96 bp):
CCATGTCTGGGACATGGCATCAGCCACATCATGAAAGCCAGTGTAAGACCATGTCTAGGACATGG
CATCAACATTGAGACGAGAGCTAGTGTAAGA
Found at i:80675435 original size:48 final size:48
Alignment explanation
Indices: 80675261--80675434 Score: 231
Period size: 48 Copynumber: 3.6 Consensus size: 48
80675251 TATGAAAGCC
* *
80675261 AGTGTAAGACCATGTTTGGGACATGGCATCAACATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGAGCT
* * * * * *
80675309 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGAGCT
* * * *
80675357 AGTGTAAGACCATGTCTAGTACATGGCATCGGTATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGAGCT
*
80675405 AGTGTAAGACCATTTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
80675435 GATTTTGACT
Statistics
Matches: 105, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 105 1.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGAGCT
Found at i:80683028 original size:48 final size:48
Alignment explanation
Indices: 80682906--80683274 Score: 253
Period size: 48 Copynumber: 7.7 Consensus size: 48
80682896 TATGTGTGCT
* * * * * *
80682906 AGTGTAGGACCATGTTTGAAACATGACATCGGCAATGTTGTGAGAGCC
1 AGTGTAAGACCATGTTTGAGACATGGCATCGGCATTGATATGAGAGCC
** * * * * * * *
80682954 AGTGTAAGATTATGTCTGGGAAATGGCATTGGCATTGATATGTGCGCT
1 AGTGTAAGACCATGTTTGAGACATGGCATCGGCATTGATATGAGAGCC
** * *
80683002 AGTGTAAGACCATGTCCGAGACATGGCATCGGCCA-TGTTATGAAAGCC
1 AGTGTAAGACCATGTTTGAGACATGGCATCGG-CATTGATATGAGAGCC
* * * * * *
80683050 AATGTAAGACCATGTCT-AGGATATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTTTGA-GACATGGCATCGGCATTGATATGAGAGCC
* * * * * *
80683098 AGTGTAAGACCATGTTTGGGACATTGCATCGGCCTCGACATGTGAGCC
1 AGTGTAAGACCATGTTTGAGACATGGCATCGGCATTGATATGAGAGCC
* * * * * **
80683146 ACTGTACGACCATGTCT-AGGACATGGCATCGGTATTGAGACT-AGAGAT
1 AGTGTAAGACCATGTTTGA-GACATGGCATCGGCATTGATA-TGAGAGCC
* * * * * *
80683194 AGTGTAAGACCATGTTTGGGACATGGCATTGGCCTCGACATGTGAGCC
1 AGTGTAAGACCATGTTTGAGACATGGCATCGGCATTGATATGAGAGCC
*
80683242 AATGTAAGACCATGTTTG-GAACATGGCATCGGC
1 AGTGTAAGACCATGTTTGAG-ACATGGCATCGGC
80683275 TACTCATCCT
Statistics
Matches: 241, Mismatches: 71, Indels: 18
0.73 0.22 0.05
Matches are distributed among these distances:
47 5 0.02
48 233 0.97
49 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGAGACATGGCATCGGCATTGATATGAGAGCC
Found at i:80683057 original size:96 final size:96
Alignment explanation
Indices: 80682893--80683274 Score: 349
Period size: 96 Copynumber: 4.0 Consensus size: 96
80682883 GACATTTGGG
* * * * * * * *
80682893 TGATATGTGTGCTAGTGTAGGACCATGTTTGAAACATGACATCGGCAATGTTGTGAGAGCCAGTG
1 TGATATGTGAGCTAGTGTAAGACCATGTTTGAGACATGGCATCGGCCATGTTATGAAAGCCAATG
** * *
80682958 TAAGATTATGTCTGGGAAATGGCATTGGCAT
66 TAAGACCATGTCTAGGAAATGGCATCGGCAT
* **
80682989 TGATATGTGCGCTAGTGTAAGACCATGTCCGAGACATGGCATCGGCCATGTTATGAAAGCCAATG
1 TGATATGTGAGCTAGTGTAAGACCATGTTTGAGACATGGCATCGGCCATGTTATGAAAGCCAATG
*
80683054 TAAGACCATGTCTAGGATATGGCATCGGCAT
66 TAAGACCATGTCTAGGAAATGGCATCGGCAT
* * * * * ** ** *
80683085 TGAGACGAGAGCTAGTGTAAGACCATGTTTGGGACATTGCATCGGCC-TCGACATGTGAGCCACT
1 TGATATGTGAGCTAGTGTAAGACCATGTTTGAGACATGGCATCGGCCAT-GTTATGAAAGCCAAT
* * *
80683149 GTACGACCATGTCTAGGACATGGCATCGGTAT
65 GTAAGACCATGTCTAGGAAATGGCATCGGCAT
* * * * * ** **
80683181 TGAGACT-AGAGATAGTGTAAGACCATGTTTGGGACATGGCATTGGCC-TCGACATGTGAGCCAA
1 TGATA-TGTGAGCTAGTGTAAGACCATGTTTGAGACATGGCATCGGCCAT-GTTATGAAAGCCAA
*
80683244 TGTAAGACCATGT-TTGGAACATGGCATCGGC
64 TGTAAGACCATGTCTAGGAA-ATGGCATCGGC
80683275 TACTCATCCT
Statistics
Matches: 243, Mismatches: 40, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
95 5 0.02
96 238 0.98
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (96 bp):
TGATATGTGAGCTAGTGTAAGACCATGTTTGAGACATGGCATCGGCCATGTTATGAAAGCCAATG
TAAGACCATGTCTAGGAAATGGCATCGGCAT
Found at i:80697189 original size:43 final size:42
Alignment explanation
Indices: 80697105--80697224 Score: 143
Period size: 43 Copynumber: 2.8 Consensus size: 42
80697095 AGGGTAACTA
*
80697105 AGATTACGTGTAAGACCATATCTGAGATATGGCATCGATATG
1 AGATTACGTGTAAGACCATAGCTGAGATATGGCATCGATATG
* * *
80697147 AGACTT-TGTGTAAGACCATAGCTGGGTTATTGGCATCGATATG
1 AGA-TTACGTGTAAGACCATAGCTGAGATA-TGGCATCGATATG
* ** *
80697190 AGATTACATGTAAGACCATATTTGGGATATGGCAT
1 AGATTACGTGTAAGACCATAGCTGAGATATGGCAT
80697225 TGGCATGGTA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
42 30 0.45
43 36 0.55
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (42 bp):
AGATTACGTGTAAGACCATAGCTGAGATATGGCATCGATATG
Found at i:80704125 original size:43 final size:42
Alignment explanation
Indices: 80704021--80704138 Score: 150
Period size: 43 Copynumber: 2.8 Consensus size: 42
80704011 AGGGTTACTA
*
80704021 AGATTACATGTAAGACCATATCTGGGATATGGCATCGATATG
1 AGATTACATGTAAGACCATAACTGGGATATGGCATCGATATG
* *
80704063 AGGCTT-CATGTAAGACCATAACTGGGCTATTGGCATCGATATG
1 A-GATTACATGTAAGACCATAACTGGGATA-TGGCATCGATATG
* *
80704106 AGATTACATAG-AAGTCCATACCTGGGATATGGC
1 AGATTACAT-GTAAGACCATAACTGGGATATGGC
80704139 TTTGGTATGG
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
42 29 0.45
43 35 0.54
44 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (42 bp):
AGATTACATGTAAGACCATAACTGGGATATGGCATCGATATG
Found at i:80704727 original size:18 final size:18
Alignment explanation
Indices: 80704701--80704735 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
80704691 TTGTGGCTGA
*
80704701 TTTGTTTTTATGTATATG
1 TTTGGTTTTATGTATATG
80704719 TTTGGTTTTATGTATAT
1 TTTGGTTTTATGTATAT
80704736 TATTTGTCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.00, G:0.17, T:0.66
Consensus pattern (18 bp):
TTTGGTTTTATGTATATG
Found at i:80704741 original size:19 final size:18
Alignment explanation
Indices: 80704700--80704741 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
80704690 GTTGTGGCTG
*
80704700 ATTTGTTTTTATGTATAT
1 ATTTGGTTTTATGTATAT
*
80704718 GTTTGGTTTTATGTATATT
1 ATTTGGTTTTATGTATA-T
80704737 ATTTG
1 ATTTG
80704742 TCCATACAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.19, C:0.00, G:0.17, T:0.64
Consensus pattern (18 bp):
ATTTGGTTTTATGTATAT
Found at i:80706496 original size:16 final size:16
Alignment explanation
Indices: 80706477--80706508 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
80706467 AATTGTTTTA
80706477 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
80706493 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
80706509 ATTCCATTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:80706793 original size:50 final size:50
Alignment explanation
Indices: 80706718--80707100 Score: 408
Period size: 50 Copynumber: 7.6 Consensus size: 50
80706708 CGGGTATGCA
* * *
80706718 TAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * * *
80706768 TAGTAGCCTGCACTTAGTACTACACATGTGACTTATCCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * * *
80706818 TAGTAGCCTGCACTTAGTACTACACATGCGTCCTATCAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * * * * *
80706868 TAGTAGCATGCACTTAGGACTAGACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
** ** * *
80706918 TAGTAGCCTGCACTTAGTACTACACACATGATCGAAACTATC-GAGTACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCTAACAATCTG-GTACACG
* ** **
80706969 TAGCAGCCTATACTTAGTACTACACATGCAACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * *** *
80707019 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACTATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACAATCTGGTACACG
*
80707071 TAGTAGCCTGCACATAGTACTACACATGTG
1 TAGTAGCCTGCACTTAGTACTACACATGTG
80707101 TTATCACAAC
Statistics
Matches: 274, Mismatches: 54, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
50 198 0.72
51 37 0.14
52 39 0.14
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
Found at i:80707097 original size:151 final size:148
Alignment explanation
Indices: 80706718--80707100 Score: 455
Period size: 151 Copynumber: 2.5 Consensus size: 148
80706708 CGGGTATGCA
* * * * *
80706718 TAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCATGCACTTAGTACTACACACGTGACCTAACAATCTGATACACGTAGTAGCCTGCACTT
* * * * *
80706783 AGTACTACACATGTGACTTATCCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGCG
66 AGTACTACACATGTGA--TAACCATCTGATACACATAGCAGCCTACACTTAGTACTACACATGCA
* *
80706848 TCCTATCAATCCGGTACACG
129 ACCTAACAATCCGGTACACG
* * *
80706868 TAGTAGCATGCACTTAGGACTAGACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCATGCACTTAGTACTACACACGTGACCTAACAATCTGATACACGTAGTAGCCTGCACTT
* *
80706933 AGTACTACACACATGATCGA-AACTATC-GAGTACACATAGCAGCCTATACTTAGTACTACACAT
66 AGTACT--ACACATG-T-GATAACCATCTGA-TACACATAGCAGCCTACACTTAGTACTACACAT
*
80706996 GCAACCTAACAATCTGGTACACG
126 GCAACCTAACAATCCGGTACACG
* * * * *
80707019 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACTATCTTAAACACATAGTAGCCTGCAC
1 TAGTAGCATGCACTTAGTACTACACACGTGACCT--AACAATCTGATACACGTAGTAGCCTGCAC
*
80707084 ATAGTACTACACATGTG
64 TTAGTACTACACATGTG
80707101 TTATCACAAC
Statistics
Matches: 200, Mismatches: 26, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
149 1 0.00
150 66 0.33
151 91 0.46
152 7 0.04
153 33 0.17
154 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (148 bp):
TAGTAGCATGCACTTAGTACTACACACGTGACCTAACAATCTGATACACGTAGTAGCCTGCACTT
AGTACTACACATGTGATAACCATCTGATACACATAGCAGCCTACACTTAGTACTACACATGCAAC
CTAACAATCCGGTACACG
Found at i:80710285 original size:123 final size:123
Alignment explanation
Indices: 80710066--80710596 Score: 1035
Period size: 123 Copynumber: 4.3 Consensus size: 123
80710056 GAATTATGTG
80710066 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
80710131 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
*
80710189 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCAG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
80710254 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
*
80710312 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATAAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
80710377 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
*
80710435 AAATGAAATATGAATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
80710500 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
80710558 AAATGAAATATGGATGTGTAATGATTATTGATATATGTG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTG
80710597 ACAGCCCAAA
Statistics
Matches: 402, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 402 1.00
ACGTcount: A:0.31, C:0.10, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:80712203 original size:58 final size:58
Alignment explanation
Indices: 80712129--80712351 Score: 179
Period size: 58 Copynumber: 3.9 Consensus size: 58
80712119 TACGGTGACG
* *
80712129 AGAT-TGGCACTAAGTGTGCATGCTGAAAATATATGGCACTAAGTGTGC-ATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGAAAATATACGGCACTAAGTGTGCGA-GCTCGAA
* * **
80712186 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGAGCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGAAAATATACGGCACTAAGTGTGCGAGCTCGAA
* * ** * * * * * *
80712244 GGGTATGGCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-A
1 AGATATGGCACTAAGTGTGCATGCTGAAAA-TATACGGCACTAAGTGTGCGAGCTCGAA
** * *
80712302 TTATATAGCACTAAGTGTGCGA-GTTGAATACATATA--GCACTAAGTGTGCG
1 AGATATGGCACTAAGTGTGC-ATGCTGAA-A-ATATACGGCACTAAGTGTGCG
80712352 GATTCACTAT
Statistics
Matches: 133, Mismatches: 27, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
57 17 0.13
58 90 0.68
59 25 0.19
60 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.27
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGAAAATATACGGCACTAAGTGTGCGAGCTCGAA
Found at i:80712264 original size:29 final size:29
Alignment explanation
Indices: 80712133--80712263 Score: 174
Period size: 29 Copynumber: 4.5 Consensus size: 29
80712123 GTGACGAGAT
*
80712133 TGGCACTAAGTGTGCATGCTGAAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
80712162 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
80712191 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
80712220 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
80712249 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
80712264 GGGTTTAAAA
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
29 89 0.99
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:80712320 original size:28 final size:28
Alignment explanation
Indices: 80712251--80712351 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
80712241 GAAGGGTATG
* * * *
80712251 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
80712281 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
80712309 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
80712338 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
80712352 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:80713615 original size:40 final size:40
Alignment explanation
Indices: 80713546--80713749 Score: 178
Period size: 40 Copynumber: 5.1 Consensus size: 40
80713536 TGAATGATAC
* * * * * *
80713546 CCGGACTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATTATAT
* * * * *
80713586 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTACAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATTATAT
** *
80713626 CCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTTAAAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATTATAT
* * ** *
80713666 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCTAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATTATAT
* **
80713706 CCGGGCTAAGACCCGAAGGC-ATTCGTGCATGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATTATAT
80713746 CCGG
1 CCGG
80713750 TTGTATTCCG
Statistics
Matches: 136, Mismatches: 25, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 5 0.04
40 129 0.95
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATTATAT
Found at i:80713685 original size:80 final size:80
Alignment explanation
Indices: 80713584--80713749 Score: 228
Period size: 80 Copynumber: 2.1 Consensus size: 80
80713574 TAGTAATTAT
* *
80713584 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGT-G-ACTACATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGTACT--ATCCGGGCTAAGACCCGAAGGCA
*
80713647 TTCGTGCAAGTTGTTAA
64 TTCGTGCAAGTGGTTAA
* * *
80713664 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGTACTATCCGGGCTAAGACCCGAAGGCATT
* *
80713729 CGTGCATGTGGTTAT
66 CGTGCAAGTGGTTAA
80713744 ATCCGG
1 ATCCGG
80713750 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 73 0.96
81 1 0.01
82 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGTACTATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGTTAA
Found at i:80716501 original size:15 final size:15
Alignment explanation
Indices: 80716477--80716521 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
80716467 AAACAGGATT
*
80716477 AAGAAGTCCAAGATA
1 AAGAAATCCAAGATA
*
80716492 GAGAAATCCAAGATA
1 AAGAAATCCAAGATA
80716507 AAGAAATCCAAGATA
1 AAGAAATCCAAGATA
80716522 CAATATCATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.56, C:0.13, G:0.18, T:0.13
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:80721001 original size:105 final size:105
Alignment explanation
Indices: 80720819--80721031 Score: 340
Period size: 105 Copynumber: 2.0 Consensus size: 105
80720809 AAAACTAAGC
*
80720819 GAATAACTCTAAAGAATAATGATGGGTTGGAAATTGTTGTTGGTAGTGAAAGACTGGGTTTTATG
1 GAATAACTCTAAAGAATAATGATGGGTTGGAAATTATTGTTGGTAGTGAAAGACTGGGTTTTATG
*
80720884 TATAATTTGGTTTC-GACAATGAAGGCTGAAAAGATTATGG
66 TATAATGTGGTTTCTG-CAATGAAGGCTGAAAAGATTATGG
* *
80720924 GAATAACTCTAAGGAATAATGATGGGTTGGAAATTATTGTTGGTGGTGAAAGA-TCGGGTTTTAT
1 GAATAACTCTAAAGAATAATGATGGGTTGGAAATTATTGTTGGTAGTGAAAGACT-GGGTTTTAT
* *
80720988 GTCTAATGTGGTTTCTGCTATGAAGGCTGAAAAGATTATGG
65 GTATAATGTGGTTTCTGCAATGAAGGCTGAAAAGATTATGG
80721029 GAA
1 GAA
80721032 AAGGTTGTAG
Statistics
Matches: 100, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
104 1 0.01
105 98 0.98
106 1 0.01
ACGTcount: A:0.32, C:0.06, G:0.29, T:0.33
Consensus pattern (105 bp):
GAATAACTCTAAAGAATAATGATGGGTTGGAAATTATTGTTGGTAGTGAAAGACTGGGTTTTATG
TATAATGTGGTTTCTGCAATGAAGGCTGAAAAGATTATGG
Found at i:80726464 original size:20 final size:20
Alignment explanation
Indices: 80726436--80726481 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
80726426 AAAGATTTGG
*
80726436 TATCAATACCTTTGCTCGAA
1 TATCGATACCTTTGCTCGAA
* *
80726456 TATCGATACCTTTGCTTGAG
1 TATCGATACCTTTGCTCGAA
80726476 TATCGA
1 TATCGA
80726482 GACTTGGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (20 bp):
TATCGATACCTTTGCTCGAA
Found at i:80728199 original size:390 final size:387
Alignment explanation
Indices: 80727454--80728618 Score: 1503
Period size: 390 Copynumber: 3.0 Consensus size: 387
80727444 TCCACGTCGC
* *
80727454 ATGAACTTTTGATTGCTTGGGC-TTCCCTCTATCATCGAATGAGAATTAAATGAACTCTTCGACC
1 ATGAACTTTTGATTGCTTGAGCTTTCCCTCTATCATCGAATGAGAATTAAACGAACTCTTCGACC
* * *
80727518 TCTTCAGTTGGCACCTCTTCAATCTTGGCTAGAAAGTGTATTGGATCTTCTACACTTTCATTCAG
66 TTTTCAGTTGGCACCTCTTCAATCTTGGCCAGAAAGTGTATTGGCTCTTCTACACTTTCATTCAG
* *
80727583 AATCAGTTTAAGCTCCATGGTAGTGGTTAGATTATCTGTTACTTCTACATCTACAGTAACATTTG
131 AATCAGTTTAAGCTCCATGGTAGTGGTTAGATCATCTGTTACTTCTACATCTACAGTTACATTTG
* ** * *
80727648 CTGCTATGTCAATTATATTGGAGATTGCTTCAATTATATTCAAATCATTTCCATGA-TCTACGGT
196 CTGCTATGTCAATT-GATTGGAGACCGCTTCAACTATATTCAAATCA-TCCCATGATTCTA--GT
* * * *
80727712 TCCAAACTCTTGTTGAATTTCACGATTAAACTCATCATGGTTGACGATAGTACAAAGGTCCTTAT
257 TCCAGACTCTTGTTTAATTTCACCATTAAACTCATCATGGTTGACGATAGTACAAAGGTCCTCAT
* *
80727777 GATCAAAATT-GAGAACATCATGCACGACCTCTTTCAATTGAGGCAGTGCCTCAGATATTTATAA
322 GATCAAAATTGGA-AACATCATGCACGACCTCTTTCAGTGGAGGCAGTGCCTCAGATATTTATAA
80727841 GA
386 GA
* * *
80727843 ATGAACTTTTGATTGCTCGAGCTTTCACTCTATCATCGAATGAGAATGAAACGAACTCTTCGACC
1 ATGAACTTTTGATTGCTTGAGCTTTCCCTCTATCATCGAATGAGAATTAAACGAACTCTTCGACC
* * * *
80727908 TTTTCGGATGGAACCTCTTCAATCTTGGCCAGAAAGTGTATTGGCTCTTCTACACTTTCATTCAA
66 TTTTCAGTTGGCACCTCTTCAATCTTGGCCAGAAAGTGTATTGGCTCTTCTACACTTTCATTCAG
* * * * * *
80727973 AACCAGTTTAAGCTCTAAGGTAGTGGTTAGATCATCTGTTACTTCTACATCTATAGTTGCATTTT
131 AATCAGTTTAAGCTCCATGGTAGTGGTTAGATCATCTGTTACTTCTACATCTACAGTTACATTTG
** ** *
80728038 CTATTATGTCAATTGGATTGGAGACCATTTCAACTATATTCAAATCATGCCCTTGATTTCTAGTT
196 CTGCTATGTCAATT-GATTGGAGACCGCTTCAACTATATTCAAATCAT-CCCATGA-TTCTAGTT
* * *
80728103 CCAGACTCTTATTTAATTTCACCATTAAACTCATCATGGTTGATGATAGTACAAAGATCCTCATG
258 CCAGACTCTTGTTTAATTTCACCATTAAACTCATCATGGTTGACGATAGTACAAAGGTCCTCATG
* * * * ** *
80728168 ATCAGAATTGGAAACATCATGCACGACCTCTTTCAGTGGAGGTAGCGCCTCAGATATTTGTTGGC
323 ATCAAAATTGGAAACATCATGCACGACCTCTTTCAGTGGAGGCAGTGCCTCAGATATTTATAAGA
* * ** * *
80728233 GTGAAGTTTCAATTGCTTGAGCTTTCCCTCTATCATCGAATGAGAATTTTAAACAAACTCTT-TA
1 ATGAACTTTTGATTGCTTGAGCTTTCCCTCTATCATCGAATGAGAA--TTAAACGAACTCTTCGA
* * ** * *
80728297 ACTTCTTTAGTTGGCATATCTTCAATCTTGGCCAGAAATTGTATTGGCTTTTCTACACTTTCATT
64 CCTT-TTCAGTTGGCACCTCTTCAATCTTGGCCAGAAAGTGTATTGGCTCTTCTACACTTTCATT
* * *
80728362 CAGAATCAGTTTAAGCTCCATGGTAATGGTTAGATCATCTATTACTTCTACAT-TGACGGTTACA
128 CAGAATCAGTTTAAGCTCCATGGTAGTGGTTAGATCATCTGTTACTTCTACATCT-ACAGTTACA
*
80728426 TTTGCTGCTATGTCGATATGATTGGAGACCGCTTCAACTATATTCAAATCATCCTCATGATCTCT
192 TTTGCTGCTATGTCAAT-TGATTGGAGACCGCTTCAACTATATTCAAATCATCC-CATGAT-TCT
* * * * * *
80728491 AATTTCTGACTCTTGTTTAATTTCACCATTAAACTCATCATGGTCGACCATAGTACATAGGTCCT
254 AGTTCCAGACTCTTGTTTAATTTCACCATTAAACTCATCATGGTTGACGATAGTACAAAGGTCCT
* * * * *
80728556 CATGATTAAAATTGGGAACATCATGCACAACCTCTTTCAGTGGAGGCAGTGCATCAAATATTT
319 CATGATCAAAATTGGAAACATCATGCACGACCTCTTTCAGTGGAGGCAGTGCCTCAGATATTT
80728619 TTTAGAGCAT
Statistics
Matches: 666, Mismatches: 98, Indels: 21
0.85 0.12 0.03
Matches are distributed among these distances:
389 21 0.03
390 351 0.53
391 10 0.02
392 283 0.42
393 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (387 bp):
ATGAACTTTTGATTGCTTGAGCTTTCCCTCTATCATCGAATGAGAATTAAACGAACTCTTCGACC
TTTTCAGTTGGCACCTCTTCAATCTTGGCCAGAAAGTGTATTGGCTCTTCTACACTTTCATTCAG
AATCAGTTTAAGCTCCATGGTAGTGGTTAGATCATCTGTTACTTCTACATCTACAGTTACATTTG
CTGCTATGTCAATTGATTGGAGACCGCTTCAACTATATTCAAATCATCCCATGATTCTAGTTCCA
GACTCTTGTTTAATTTCACCATTAAACTCATCATGGTTGACGATAGTACAAAGGTCCTCATGATC
AAAATTGGAAACATCATGCACGACCTCTTTCAGTGGAGGCAGTGCCTCAGATATTTATAAGA
Found at i:80729464 original size:24 final size:24
Alignment explanation
Indices: 80729437--80729485 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
80729427 TAACCTAGAA
80729437 TTAATTGAAAATCTAATTATTAAC
1 TTAATTGAAAATCTAATTATTAAC
80729461 TTAATTGAAAATCTAATTATTAAC
1 TTAATTGAAAATCTAATTATTAAC
80729485 T
1 T
80729486 AAGTTAACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.45, C:0.08, G:0.04, T:0.43
Consensus pattern (24 bp):
TTAATTGAAAATCTAATTATTAAC
Found at i:80738450 original size:2 final size:2
Alignment explanation
Indices: 80738443--80738476 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
80738433 GTATTGTACT
80738443 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
80738477 ATTGATGTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:80745353 original size:34 final size:34
Alignment explanation
Indices: 80745305--80745377 Score: 137
Period size: 34 Copynumber: 2.1 Consensus size: 34
80745295 TCATTTGACA
*
80745305 AAAAGTTAACCATATTAAATTTATTATTAATTTT
1 AAAACTTAACCATATTAAATTTATTATTAATTTT
80745339 AAAACTTAACCATATTAAATTTATTATTAATTTT
1 AAAACTTAACCATATTAAATTTATTATTAATTTT
80745373 AAAAC
1 AAAAC
80745378 AATATATCTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.47, C:0.08, G:0.01, T:0.44
Consensus pattern (34 bp):
AAAACTTAACCATATTAAATTTATTATTAATTTT
Found at i:80747715 original size:12 final size:12
Alignment explanation
Indices: 80747698--80747724 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
80747688 CCTTAATCCA
80747698 CTCCTCAAATCT
1 CTCCTCAAATCT
80747710 CTCCTCAAATCT
1 CTCCTCAAATCT
80747722 CTC
1 CTC
80747725 AACTCTCCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.44, G:0.00, T:0.33
Consensus pattern (12 bp):
CTCCTCAAATCT
Found at i:80749711 original size:40 final size:40
Alignment explanation
Indices: 80749667--80749821 Score: 208
Period size: 40 Copynumber: 3.9 Consensus size: 40
80749657 GACTAAGATT
*
80749667 CGAAGGCATTTGTACGAGTTACTAAATCTGGGTTAAGTCC
1 CGAAGGCATTTGTACGAGTTACTAAATCCGGGTTAAGTCC
*
80749707 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
1 CGAAGGCATTTGTACGAGTTACTAAATCCGGGTTAAGTCC
* * *
80749747 CGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCC
1 CGAAGGCATTTGTACGAGTTACTA-AATCCGGGTTAAGTCC
* *
80749787 CGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA
1 CGAAGGCATTTGTACGAGTTA-CTAAATCCGGGTTAA
80749822 ACTCCGAAGG
Statistics
Matches: 103, Mismatches: 9, Indels: 7
0.87 0.08 0.06
Matches are distributed among these distances:
39 7 0.07
40 94 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (40 bp):
CGAAGGCATTTGTACGAGTTACTAAATCCGGGTTAAGTCC
Found at i:80756668 original size:28 final size:28
Alignment explanation
Indices: 80756620--80756687 Score: 111
Period size: 28 Copynumber: 2.5 Consensus size: 28
80756610 TTTAAAACCC
* *
80756620 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCAGTAATTTTGCTCTT
80756647 TAGGGGTAATTTCAGTAATTTTGCTCTT
1 TAGGGGTAATTTCAGTAATTTTGCTCTT
80756675 TAGGGGTAATTTC
1 TAGGGGTAATTTC
80756688 GTGATCTACG
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 31 0.82
ACGTcount: A:0.21, C:0.10, G:0.25, T:0.44
Consensus pattern (28 bp):
TAGGGGTAATTTCAGTAATTTTGCTCTT
Found at i:80759223 original size:80 final size:80
Alignment explanation
Indices: 80759139--80759287 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
80759129 TATGGTAACC
* * * *
80759139 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
80759203 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
80759219 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
80759284 CCGG
66 CCGG
80759288 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:80759229 original size:40 final size:38
Alignment explanation
Indices: 80759180--80759287 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
80759170 ATCACGATTT
*
80759180 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
80759220 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
80759260 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
80759288 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:80768026 original size:41 final size:41
Alignment explanation
Indices: 80767981--80768098 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
80767971 TGAAAGATAA
80767981 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
80768022 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
80768052 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
80768093 ATGTAG
1 ATGTAG
80768099 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:80768037 original size:71 final size:71
Alignment explanation
Indices: 80767949--80768112 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
80767939 GAGATGTATC
80767949 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
80768014 AGGACA
66 AGGACA
80768020 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
80768085 AGGACA
66 AGGACA
80768091 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
80768113 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:80775545 original size:68 final size:70
Alignment explanation
Indices: 80775473--80775670 Score: 285
Period size: 71 Copynumber: 2.8 Consensus size: 70
80775463 ACACCCTGTA
* * * *
80775473 GTAGCTAGGTCACATGTGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCACATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
80775535 ATAAAT
65 ATAAAT
*
80775541 GTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCACATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
80775606 ATAAAT
65 ATAAAT
* *
80775612 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCACATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
80775671 AGACAAATCG
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.03
70 1 0.01
71 92 0.77
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.21
Consensus pattern (70 bp):
GTAGCTAGGTCACATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:80775596 original size:71 final size:71
Alignment explanation
Indices: 80775507--80775670 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
80775497 GAGATGTATC
80775507 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGA
80775572 AGGACA
66 AGGACA
*
80775578 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGA
80775643 AGGACA
66 AGGACA
80775649 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
80775671 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGA
AGGACA
Found at i:80780091 original size:40 final size:40
Alignment explanation
Indices: 80780010--80780193 Score: 232
Period size: 40 Copynumber: 4.6 Consensus size: 40
80780000 GAATGATGTT
* * * * *
80780010 CGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACTATATC
1 CGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATC
80780050 CGGAG-TAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGG-GTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
80780090 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTGAATC
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
80780130 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-C
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATC
* *
80780170 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGTTAAGTCCCGAAGGCATTTG
80780194 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
39 2 0.02
40 117 0.90
41 11 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:80780211 original size:80 final size:80
Alignment explanation
Indices: 80780010--80780226 Score: 234
Period size: 80 Copynumber: 2.7 Consensus size: 80
80780000 GAATGATGTT
* ** * *
80780010 CGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACTATATCCGGAG-TAAGATCCGAAGGCATTT
1 CGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTTACTATATCCGG-GTTAAGATCCGAAGGCATTT
80780073 GTGCGAGTTACTAAATC
64 GTGCGAGTTACTAAATC
* **
80780090 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTGA-ATCCGGGTTAAG-TCCCGAAGGCATTT
1 CGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACT-ATATCCGGGTTAAGAT-CCGAAGGCATTT
80780153 GTGCGAGTTACTATAA-C
64 GTGCGAGTTACTA-AATC
*
80780170 CGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 CGGGCTAAGTCCCGAAGGCATTTGAACGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
80780227 TACGTGATTC
Statistics
Matches: 120, Mismatches: 8, Indels: 19
0.82 0.05 0.13
Matches are distributed among these distances:
79 18 0.15
80 92 0.77
81 10 0.08
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTTGT
GCGAGTTACTAAATC
Found at i:80784782 original size:36 final size:36
Alignment explanation
Indices: 80784730--80784801 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
80784720 CAAGCCCATG
*
80784730 CCTCAATTTCTGATTTTGATGATGATTTTGGAATGT
1 CCTCAATTTCTGATTTTGATGATGATTTTGAAATGT
* *
80784766 CCTCAATTTTTTATTTTGATGATGATTTTGAAATGT
1 CCTCAATTTCTGATTTTGATGATGATTTTGAAATGT
80784802 TCCATGGATA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.24, C:0.10, G:0.17, T:0.50
Consensus pattern (36 bp):
CCTCAATTTCTGATTTTGATGATGATTTTGAAATGT
Found at i:80787500 original size:41 final size:43
Alignment explanation
Indices: 80787455--80787548 Score: 104
Period size: 41 Copynumber: 2.2 Consensus size: 43
80787445 TGTGGTTACG
* * *
80787455 TGTAAGACCATGTTTAGGACA-TCGACATCG-TATTTGAT-TCA
1 TGTAAGACCATGTCTAGGACAGT-GACATCGATATGTGATAGCA
* * *
80787496 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATAGCA
1 TGTAAGACCATGTCTAGGACAGTGACATCGATATGTGATAGCA
80787539 TGTAAGACCA
1 TGTAAGACCA
80787549 CATCTAAGAC
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
41 24 0.56
42 8 0.19
43 11 0.26
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (43 bp):
TGTAAGACCATGTCTAGGACAGTGACATCGATATGTGATAGCA
Found at i:80798307 original size:46 final size:47
Alignment explanation
Indices: 80798247--80798420 Score: 153
Period size: 46 Copynumber: 3.8 Consensus size: 47
80798237 AGATTATTGT
* * * *
80798247 GAGCTAGTGTAAGA-CATGTTTCGGACAT-GCATCGGCCATATTATAA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TATGATAA
* * *
80798293 GAGCCAGTGTAAGACCATGTCTGCGACATGGCATCGGCGT-TGAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAT--GATAA
* * * * * *
80798341 GTGCTACTGTAAGA-CATGTTTGGGACAT-GCATCGG-CTATGAGAG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTATGATAA
*
80798385 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
80798421 ACACAGATAT
Statistics
Matches: 102, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
44 14 0.14
45 14 0.14
46 28 0.27
47 24 0.24
48 22 0.22
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTATGATAA
Found at i:80798415 original size:92 final size:94
Alignment explanation
Indices: 80798249--80798420 Score: 267
Period size: 92 Copynumber: 1.9 Consensus size: 94
80798239 ATTATTGTGA
* * *
80798249 GCTAGTGTAAGACATGTTTCGGACATGCATCGGCCATATTATAAGAGCCAGTGTAAGACCATGTC
1 GCTACTGTAAGACATGTTTCGGACATGCATCGGCCATATGAGAAGAGCCAGTGTAAGACCATGTC
80798314 TGCGACATGGCATCGGCGTTGAGATGAGT
66 TGCGACATGGCATCGGCGTTGAGATGAGT
* * *
80798343 GCTACTGTAAGACATGTTTGGGACATGCATCGG-C-TATGAGAGGTGCCAGTGTAAGACCATGTC
1 GCTACTGTAAGACATGTTTCGGACATGCATCGGCCATATGAGAAGAGCCAGTGTAAGACCATGTC
*
80798406 TGGGACATGGCATCG
66 TGCGACATGGCATCG
80798421 ACACAGATAT
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 39 0.55
93 1 0.01
94 31 0.44
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (94 bp):
GCTACTGTAAGACATGTTTCGGACATGCATCGGCCATATGAGAAGAGCCAGTGTAAGACCATGTC
TGCGACATGGCATCGGCGTTGAGATGAGT
Found at i:80805514 original size:28 final size:28
Alignment explanation
Indices: 80805468--80805536 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
80805458 TTTAAAACCC
*
80805468 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
80805495 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
80805523 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
80805537 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:80807179 original size:20 final size:20
Alignment explanation
Indices: 80807156--80807193 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
80807146 CACATCCAAA
*
80807156 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
80807176 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
80807194 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:80813510 original size:28 final size:28
Alignment explanation
Indices: 80813464--80813532 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
80813454 TTTAAAACCC
*
80813464 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
80813491 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
80813519 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
80813533 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:80815175 original size:20 final size:20
Alignment explanation
Indices: 80815152--80815189 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
80815142 CACATCCAAA
*
80815152 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
80815172 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
80815190 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:80818298 original size:64 final size:64
Alignment explanation
Indices: 80818219--80818402 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
80818209 AGACATTATG
* *
80818219 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
80818283 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
80818348 AA
63 AA
* * * *
80818350 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
80818403 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:80820414 original size:47 final size:45
Alignment explanation
Indices: 80820304--80820424 Score: 120
Period size: 47 Copynumber: 2.6 Consensus size: 45
80820294 GTTATTGTGA
* *
80820304 GCTAGTGTAAGACATGTCTGGCACAT-GCATCGGCCACATTATGAGG
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCAG-C-CATTATGAGG
* * *
80820350 GCGAGTATAAGACCATGTCTGGGACATGGCATCAG-CATTGAGATGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCAGCCATT---ATGAGG
*
80820398 GCTAGTGTAAGACATGTTTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
80820425 CATTGGCCTC
Statistics
Matches: 62, Mismatches: 8, Indels: 9
0.78 0.10 0.11
Matches are distributed among these distances:
45 4 0.06
46 10 0.16
47 27 0.44
48 21 0.34
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCAGCCATTATGAGG
Found at i:80820460 original size:46 final size:44
Alignment explanation
Indices: 80820396--80820519 Score: 160
Period size: 46 Copynumber: 2.7 Consensus size: 44
80820386 ATTGAGATGA
*
80820396 GTGCTAGTGTAAGACATGTTTGGGACATGCATTGGCCT-CGAGAC
1 GTGCCAGTGTAAGACATGTTTGGGACATGCATTGG-CTACGAGAC
* *
80820440 GTAAGCCAGTGTAAGACATGTTTGGGACATGCATTGGCTACTAGAG
1 GT--GCCAGTGTAAGACATGTTTGGGACATGCATTGGCTACGAGAC
*
80820486 GTGTCAGTGTAAGACCATGTTTGGGACATAGCAT
1 GTGCCAGTGTAAGA-CATGTTTGGGACAT-GCAT
80820520 CAACACAGAT
Statistics
Matches: 71, Mismatches: 4, Indels: 8
0.86 0.05 0.10
Matches are distributed among these distances:
44 13 0.18
45 16 0.23
46 42 0.59
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (44 bp):
GTGCCAGTGTAAGACATGTTTGGGACATGCATTGGCTACGAGAC
Found at i:80823339 original size:20 final size:20
Alignment explanation
Indices: 80823273--80823339 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
80823263 ATTTTGATAA
*
80823273 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
80823293 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
80823313 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
80823333 ACGTGAT
1 ACATGAT
80823340 GTAATCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:80823496 original size:24 final size:23
Alignment explanation
Indices: 80823390--80823508 Score: 211
Period size: 23 Copynumber: 5.1 Consensus size: 23
80823380 AGGAAGTGAA
80823390 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
80823413 AAAGGGCTTGTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
80823436 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
80823459 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
80823482 AAAGGGGCTTTTGCCCCAGTTATT
1 AAA-GGGCTTATGCCCCAGTTATT
80823506 AAA
1 AAA
80823509 AGAGGCTAGG
Statistics
Matches: 92, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
23 70 0.76
24 22 0.24
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:80828279 original size:37 final size:37
Alignment explanation
Indices: 80828229--80828302 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
80828219 TCATTCCATC
* *
80828229 AGATTTACTAGTAACTATACACTTTTCTTTAGTGAAA
1 AGATTTAATAGTAACTATACACTTGTCTTTAGTGAAA
80828266 AGATTTAATAGTAACTATACACTTGTCTTTAGTGAAA
1 AGATTTAATAGTAACTATACACTTGTCTTTAGTGAAA
80828303 TTAACAAGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39
Consensus pattern (37 bp):
AGATTTAATAGTAACTATACACTTGTCTTTAGTGAAA
Found at i:80830815 original size:22 final size:23
Alignment explanation
Indices: 80830778--80830821 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
80830768 TTTGTTGAAA
* *
80830778 ATTATCAAAATTAATTGAAATTT
1 ATTATCAAAATAAATTAAAATTT
80830801 ATTAT-AAAATAAATTAAAATT
1 ATTATCAAAATAAATTAAAATT
80830822 CAACATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (23 bp):
ATTATCAAAATAAATTAAAATTT
Found at i:80846169 original size:66 final size:68
Alignment explanation
Indices: 80846093--80846279 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
80846083 TAGTACCACT
*
80846093 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
80846155 CACG
65 CACG
80846159 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
80846224 ATCACG
63 ATCACG
80846230 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
80846280 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:80846204 original size:71 final size:71
Alignment explanation
Indices: 80846116--80846279 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
80846106 CGATTTGTCT
80846116 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
80846181 CTTTCA
66 CTTTCA
80846187 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
80846252 CTTTCA
66 CTTTCA
80846258 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
80846280 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:80846317 original size:71 final size:70
Alignment explanation
Indices: 80846116--80846313 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
80846106 CGATTTGTCT
* * *
80846116 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
80846181 CTTTCA
65 CTTTCA
* * *
80846187 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
80846252 CTTTCA
65 CTTTCA
* *
80846258 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
80846314 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:80854583 original size:47 final size:47
Alignment explanation
Indices: 80854476--80854841 Score: 222
Period size: 47 Copynumber: 7.7 Consensus size: 47
80854466 TTTGTGTGCT
80854476 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATT-ATG--AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G--ACATTGA-GAAAGAGCC
* *
80854522 AGTGTAGGACCATGTCTGGGACATGGCATCGACATTGAGACAAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGA-AAGAGCC
* * * * * *
80854570 AGTGTAAGA-CATGTATGGGACAT-GCATTGGCCTCGAG-ATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGAAAG--AGCC
* * * * * *
80854616 AGTGTAAGACCATGT-TTGGTCATGGCATCAACCA-TGAG-ATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CATTGAGAAAGAGCC
* ** *
80854661 AGTGTAAGACCATGTTTGGGACATGGCATCGACACGGATATGTAAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTG--A-GAAAGAGCC
* * * * * *
80854711 AGTGTAAGACCATGTCTGGGACATGGCGTC-AGCCTTAATCGCGATG-GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CATTGA--G-AAAGAGCC
* * * *
80854760 AATGTAAGACCATGTCTGGGACATGGCTTCGAC-TTGATGTATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGA-GAAAGAGCC
80854807 AGTGTAAGACCATGT-TCGGGACATGGCATCGACAT
1 AGTGTAAGACCATGTCT-GGGACATGGCATCGACAT
80854842 CCTACCCTAT
Statistics
Matches: 252, Mismatches: 44, Indels: 46
0.74 0.13 0.13
Matches are distributed among these distances:
44 2 0.01
45 25 0.10
46 55 0.22
47 75 0.30
48 25 0.10
49 34 0.13
50 36 0.14
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGAAAGAGCC
Found at i:80854781 original size:99 final size:92
Alignment explanation
Indices: 80854478--80854836 Score: 279
Period size: 96 Copynumber: 3.8 Consensus size: 92
80854468 TGTGTGCTAG
* ** *
80854478 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCACAT-TATGAGAGCCAGTGTAGGACCATGTCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGACCGGATGTA--AGAGCCAGTGTAAGACCATGT-TG
* * * *
80854540 GGACATGGCATCGA-CATTGAGACAAGAG-CTAG
63 GGACATGGCATCAACCA-TGAG--ATGTGTC-AA
* * * *
80854572 TGTAAGA-CATGTATGGGACAT-GCATTGGCCTCGAGATGT-A-AGCCAGTGTAAGACCATGTTT
1 TGTAAGACCATGTCTGGGACATGGCA-TCGAC-CG-GATGTAAGAGCCAGTGTAAGACCATGTTG
* *
80854633 GGTCATGGCATCAACCATGAGATGTGTCAG
63 GGACATGGCATCAACCATGAGATGTGTCAA
*
80854663 TGTAAGACCATGTTTGGGACATGGCATCGACACGGATATGTAAGAGCCAGTGTAAGACCATGTCT
1 TGTAAGACCATGTCTGGGACATGGCATCGAC-CGG--ATGTAAGAGCCAGTGTAAGACCATGT-T
* * *
80854728 GGGACATGGCGTCAGCCTTAATCGCGATG-GTCAA
62 GGGACATGGCATCAACC---AT-GAGATGTGTCAA
* ** *
80854762 TGTAAGACCATGTCTGGGACATGGCTTCGACTTGATGTATGAGCCAGTGTAAGACCATGTTCGGG
1 TGTAAGACCATGTCTGGGACATGGCATCGACCGGATGTAAGAGCCAGTGTAAGACCATGTT-GGG
80854827 ACATGGCATC
65 ACATGGCATC
80854837 GACATCCTAC
Statistics
Matches: 220, Mismatches: 27, Indels: 34
0.78 0.10 0.12
Matches are distributed among these distances:
91 13 0.06
92 19 0.09
93 24 0.11
94 44 0.20
95 24 0.11
96 52 0.24
97 2 0.01
98 2 0.01
99 35 0.16
100 5 0.02
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (92 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACCGGATGTAAGAGCCAGTGTAAGACCATGTTGGGA
CATGGCATCAACCATGAGATGTGTCAA
Found at i:80858083 original size:16 final size:16
Alignment explanation
Indices: 80858049--80858086 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
80858039 ATGTATGGGT
**
80858049 AAAAGCTGAAATGTTG
1 AAAAGCTGAAATGCCG
80858065 AAAAGCTGAAATGCCG
1 AAAAGCTGAAATGCCG
80858081 AAAAGC
1 AAAAGC
80858087 CAAAAGTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.47, C:0.13, G:0.24, T:0.16
Consensus pattern (16 bp):
AAAAGCTGAAATGCCG
Found at i:80858354 original size:29 final size:29
Alignment explanation
Indices: 80858316--80858411 Score: 122
Period size: 29 Copynumber: 3.3 Consensus size: 29
80858306 AATGTGACTA
*
80858316 CCTAACGGGCCATATAAATGTGATTTGGG
1 CCTAATGGGCCATATAAATGTGATTTGGG
* *
80858345 CCTAATGGGCCATATACAGGTGATTTGGG
1 CCTAATGGGCCATATAAATGTGATTTGGG
* * *
80858374 TCTAATGGGCCATATGAATATGA-TTGGG
1 CCTAATGGGCCATATAAATGTGATTTGGG
*
80858402 CTTAATGGGC
1 CCTAATGGGC
80858412 TAGATATAGG
Statistics
Matches: 57, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 13 0.23
29 44 0.77
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (29 bp):
CCTAATGGGCCATATAAATGTGATTTGGG
Found at i:80861133 original size:28 final size:29
Alignment explanation
Indices: 80861051--80861145 Score: 140
Period size: 29 Copynumber: 3.3 Consensus size: 29
80861041 AAAGCAAGAC
80861051 TATGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
80861080 TA-GAAATGTGATTTGGGCCTAATGGGCCA
1 TATG-AATGTGATTTGGGCCTAATGGGCCA
* * *
80861109 TATGAATGAGA-TTGGCCCTAGTGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
80861137 TATGAATGT
1 TATGAATGT
80861146 ATGTAGACTT
Statistics
Matches: 60, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
28 24 0.40
29 35 0.58
30 1 0.02
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:80869498 original size:29 final size:29
Alignment explanation
Indices: 80869456--80869524 Score: 111
Period size: 29 Copynumber: 2.4 Consensus size: 29
80869446 GCAAGACTAT
80869456 GAATGTGATTTGGGCCTAATGGGCCATAC
1 GAATGTGATTTGGGCCTAATGGGCCATAC
* *
80869485 GAATGTGATTTGGGCCTAATGGGCTATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAC
*
80869514 GAATGAGATTT
1 GAATGTGATTT
80869525 CCTAGTAGGC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.26, C:0.12, G:0.30, T:0.32
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATGGGCCATAC
Found at i:80884875 original size:40 final size:40
Alignment explanation
Indices: 80884796--80884909 Score: 151
Period size: 40 Copynumber: 2.9 Consensus size: 40
80884786 CTGTATAATA
* * * *
80884796 CCAGCTCGTAGCCTGCGGGTCTCT-AGCCCGGATAGCATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATAACATT
*
80884835 CCAGCACGAAGCCTGCAGGTCTTTAAGCCCGGATAACATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATAACATT
*
80884875 CCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATA
1 CCAGCACGA-AGCCTGCGGGTCTTTAAGCCCGGATA
80884910 CAATTCCTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
39 21 0.32
40 45 0.68
ACGTcount: A:0.22, C:0.31, G:0.25, T:0.22
Consensus pattern (40 bp):
CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATAACATT
Found at i:80896009 original size:40 final size:40
Alignment explanation
Indices: 80895938--80896041 Score: 115
Period size: 40 Copynumber: 2.6 Consensus size: 40
80895928 TACCAGCTCG
* * *
80895938 TAGCCTGCGGGTCTCT-AGCCCAGATAGCATTCTAGCACGA
1 TAGCCTGCGGGTCTTTAAGCCCAGATAACATTCCAGCA-GA
* *
80895978 -AGCCTGAGGGTCTTTAAGCCC-GAATAACATTCCAGCATA
1 TAGCCTGCGGGTCTTTAAGCCCAG-ATAACATTCCAGCAGA
*
80896017 TAGCCTGCGGATCTTTAAGCCCAGA
1 TAGCCTGCGGGTCTTTAAGCCCAGA
80896042 GACAATTCCT
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
39 15 0.28
40 37 0.70
41 1 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
TAGCCTGCGGGTCTTTAAGCCCAGATAACATTCCAGCAGA
Found at i:80897531 original size:17 final size:18
Alignment explanation
Indices: 80897489--80897537 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
80897479 AGTTGAAAAG
80897489 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
80897508 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
80897525 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
80897538 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:80898425 original size:40 final size:40
Alignment explanation
Indices: 80898360--80898525 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
80898350 AAATTGAATG
* * *
80898360 ATATCCGGGCTAAG--CCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
80898398 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
80898438 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
80898478 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
80898518 ATATCCGG
1 ATATCCGG
80898526 TTATATTCCG
Statistics
Matches: 104, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
38 13 0.12
39 3 0.03
40 86 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:80903066 original size:20 final size:18
Alignment explanation
Indices: 80903036--80903078 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
80903026 TTTGTAAAGT
*
80903036 TTGTAAAATAAGTTGTAAA
1 TTGTGAAATAA-TTGTAAA
80903055 TGTGTGAAATAATTG-AAA
1 T-TGTGAAATAATTGTAAA
80903073 TTGTGA
1 TTGTGA
80903079 GTTTCTATAG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.23
18 4 0.18
19 4 0.18
20 9 0.41
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.37
Consensus pattern (18 bp):
TTGTGAAATAATTGTAAA
Found at i:80903255 original size:26 final size:26
Alignment explanation
Indices: 80903224--80903275 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
80903214 GAATTAAAGG
80903224 ATGTTTTAATTAATGTAATGATTAAA
1 ATGTTTTAATTAATGTAATGATTAAA
80903250 ATGTTTTAATTAATGTAATGATTAAA
1 ATGTTTTAATTAATGTAATGATTAAA
80903276 TGAGTGAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (26 bp):
ATGTTTTAATTAATGTAATGATTAAA
Found at i:80903908 original size:49 final size:49
Alignment explanation
Indices: 80903757--80904026 Score: 268
Period size: 49 Copynumber: 5.6 Consensus size: 49
80903747 TATGTGTGCT
* * * *
80903757 AGTGTAAGACATGTCTGGGACAT-GCATTGGCCAT-AT-TATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGATATATGAGAGCC
* * * * *
80903803 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATATGCA-AGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGATATATG-AGAGCC
* * *
80903851 AGTGTAAGACCTGTCTGGGACATGGCATCAACATTGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGATATATGAGAGCC
* * * *
80903900 AGTGTAAGACCTGTATGGGACATGGCATCGGCCTTGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGATATATGAGAGCC
* *
80903949 AGTGTAAGACCTATCTGGGACATGGAATCGA-CTTAGATATAT--GAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTT-GATATATGAGAGCC
* * *
80903996 AGTGTAAAACCATGTTTGGAACATGGCATCG
1 AGTGTAAGACC-TGTCTGGGACATGGCATCG
80904027 GCATCGTACC
Statistics
Matches: 186, Mismatches: 31, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
46 31 0.17
47 14 0.08
48 48 0.26
49 93 0.50
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGATATATGAGAGCC
Found at i:80903966 original size:98 final size:98
Alignment explanation
Indices: 80903794--80904028 Score: 300
Period size: 98 Copynumber: 2.4 Consensus size: 98
80903784 TGGCCATATT
* * *
80903794 ATGAGAGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATATGCAAGCTAGTGTAA
1 ATGAGAGCCAGTGTAAGACCTGTATGGGACATGGCATCGGCCTCGAGATATGAAAGCTAGTGTAA
* *
80903858 GACCTGTCTGGGACATGGCATCAACATT-GATAG
66 GACCTATCTGGGACATGGAATCAAC-TTAGATAG
* *
80903891 ATGAGAGCCAGTGTAAGACCTGTATGGGACATGGCATCGGCCTTGATATATGAAAG-TCAGTGTA
1 ATGAGAGCCAGTGTAAGACCTGTATGGGACATGGCATCGGCCTCGAGATATGAAAGCT-AGTGTA
* *
80903955 AGACCTATCTGGGACATGGAATCGACTTAGATAT
65 AGACCTATCTGGGACATGGAATCAACTTAGATAG
* * *
80903989 AT--GAGCCAGTGTAAAACCATGTTTGGAACATGGCATCGGC
1 ATGAGAGCCAGTGTAAGACC-TGTATGGGACATGGCATCGGC
80904029 ATCGTACCCT
Statistics
Matches: 122, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
96 15 0.12
97 52 0.43
98 55 0.45
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (98 bp):
ATGAGAGCCAGTGTAAGACCTGTATGGGACATGGCATCGGCCTCGAGATATGAAAGCTAGTGTAA
GACCTATCTGGGACATGGAATCAACTTAGATAG
Found at i:80907869 original size:15 final size:15
Alignment explanation
Indices: 80907849--80907903 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
80907839 GTATCGTAAC
80907849 TTGGATTTCTCTATT
1 TTGGATTTCTCTATT
*
80907864 TTGGATCTCT-TAATT
1 TTGGATTTCTCT-ATT
* *
80907879 CTAGG-TTTCTCCATT
1 -TTGGATTTCTCTATT
80907894 TTGGATTTCT
1 TTGGATTTCT
80907904 TTATCTTGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 8
0.70 0.11 0.18
Matches are distributed among these distances:
14 4 0.13
15 24 0.77
16 3 0.10
ACGTcount: A:0.15, C:0.16, G:0.15, T:0.55
Consensus pattern (15 bp):
TTGGATTTCTCTATT
Found at i:80909433 original size:42 final size:42
Alignment explanation
Indices: 80909384--80909594 Score: 158
Period size: 42 Copynumber: 4.7 Consensus size: 42
80909374 TTCATTTTCT
** * *
80909384 TGATGCCATAGTTCAACTATGGTTTTACACATCTTCACATAA
1 TGATGCCATAGCCCAACTATGGTCTTACACATATTCACATAA
*
80909426 TGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
1 TGATGCCATAGCCCAACTATGGTCTTACACATATTCACATAA
* * *
80909467 TCGATGTCATAGCCCAGCTATGGTCATACATGTAATCATATATCACAT-A
1 T-GATGCCATAGCCCAACTATGGTCTTAC-----A-CATAT-TCACATAA
* **
80909516 TCGATGCCATAGCCCAGCTATAATCTTACACGAATCACATATCACAT-A
1 T-GATGCCATAGCCCAACTATGGTCTTACAC--AT---AT-TCACATAA
80909564 TCGATGCCATAGCCCAACTATGGTCTTACAC
1 T-GATGCCATAGCCCAACTATGGTCTTACAC
80909595 GAATCACATA
Statistics
Matches: 142, Mismatches: 14, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
41 2 0.01
42 60 0.42
43 1 0.01
44 1 0.01
45 2 0.01
47 1 0.01
48 43 0.30
49 32 0.23
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.29
Consensus pattern (42 bp):
TGATGCCATAGCCCAACTATGGTCTTACACATATTCACATAA
Found at i:80909553 original size:41 final size:43
Alignment explanation
Indices: 80909418--80909606 Score: 118
Period size: 48 Copynumber: 4.2 Consensus size: 43
80909408 TTACACATCT
* **
80909418 TCACATAAT-GATGCCATAGCCCAGCTATGGTCTTACAC--ATA
1 TCACAT-ATCGATGCCATAGCCCAACTATAATCTTACACGAATA
* * ** * *
80909459 TTCACATATCGATGTCATAGCCCAGCTATGGTCATACATGTAATCATATA
1 -TCACATATCGATGCCATAGCCCAACTATAATCTTACACG-----A-ATA
*
80909509 TCACATATCGATGCCATAGCCCAGCTATAATCTTACACGAATCACATA
1 TCACATATCGATGCCATAGCCCAACTATAATCTTACACG----A-ATA
**
80909557 TCACATATCGATGCCATAGCCCAACTATGGTCTTACACG-A-A
1 TCACATATCGATGCCATAGCCCAACTATAATCTTACACGAATA
80909598 TCACATATC
1 TCACATATC
80909607 TCACTGATGC
Statistics
Matches: 126, Mismatches: 12, Indels: 19
0.80 0.08 0.12
Matches are distributed among these distances:
41 12 0.10
42 33 0.26
48 44 0.35
49 34 0.27
50 3 0.02
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.28
Consensus pattern (43 bp):
TCACATATCGATGCCATAGCCCAACTATAATCTTACACGAATA
Found at i:80909570 original size:48 final size:48
Alignment explanation
Indices: 80909453--80909758 Score: 253
Period size: 48 Copynumber: 6.2 Consensus size: 48
80909443 TATGGTCTTA
* * *
80909453 CACATATTCACATATCGATGTCATAGCCCAGCTATGGTCATACATGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
* **
80909503 CATATATCACATATCGATGCCATAGCCCAGCTATAATCTTACACGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
*
80909551 CACATATCACATATCGATGCCATAGCCCAACTATGGTCTTACACGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
* * * * * * *
80909599 CACATATCTCA-CT-GATGCCATATCCTAGATATGGTCTTATAC-AGT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
* * * * * * *
80909644 -AGCATAT-ATCATACCGATGTCATATCCTAGATATGGTCTTATACGAAAG
1 CA-CATATCA-CATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
* * * *
80909693 CACATAATCACATCTCTCTGATGCCGTAGCCTAGCTATGGTCTTATACGGAAAT
1 CACAT-ATCACA--TATC-GATGCCATAGCCCAGCTATGGTCTTACAC-G-AAT
80909747 CACATATCACAT
1 CACATATCACAT
80909759 GTTGCCATGG
Statistics
Matches: 212, Mismatches: 31, Indels: 25
0.79 0.12 0.09
Matches are distributed among these distances:
44 1 0.00
45 9 0.04
46 24 0.11
47 29 0.14
48 57 0.27
49 38 0.18
50 10 0.05
51 2 0.01
52 2 0.01
53 31 0.15
54 9 0.04
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.29
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
Found at i:80911944 original size:19 final size:19
Alignment explanation
Indices: 80911920--80911969 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
80911910 GGTATAGAGC
80911920 ACACGCCCGTGTGCTAGGG
1 ACACGCCCGTGTGCTAGGG
80911939 ACACGCCCGTGTGCTAGGG
1 ACACGCCCGTGTGCTAGGG
80911958 ACACGCCCGTGT
1 ACACGCCCGTGT
80911970 CCCAAACCCG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.16, C:0.34, G:0.34, T:0.16
Consensus pattern (19 bp):
ACACGCCCGTGTGCTAGGG
Done.