Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 28 of 444
Found at i:7125397 original size:25 final size:23
Alignment explanation
Indices: 7125366--7125416 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
7125356 CTTACTTTTA
7125366 TATTATATAT-TGTAAGATTATTT
1 TATTATATATAT-TAAGATTATTT
*
7125389 TATTATATATATTAATATTA-TT
1 TATTATATATATTAAGATTATTT
7125411 TATTAT
1 TATTAT
7125417 CTATTATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 8 0.31
23 17 0.65
24 1 0.04
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (23 bp):
TATTATATATATTAAGATTATTT
Found at i:7125471 original size:34 final size:36
Alignment explanation
Indices: 7125382--7125479 Score: 98
Period size: 34 Copynumber: 2.8 Consensus size: 36
7125372 ATATTGTAAG
* *
7125382 ATTATTTTATTATATATATTAATATTA-TTTATTATCT
1 ATTATTTT-TTATAT-TATTATTATTATTTTATCATCT
* * *
7125419 ATTATTTTTCACA-AATTATTATTATTTTA-CATC-
1 ATTATTTTTTATATTATTATTATTATTTTATCATCT
7125452 ATTATTTTTTATATTATTATTA-TATTTT
1 ATTATTTTTTATATTATTATTATTATTTT
7125480 TACTTGTATT
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
33 17 0.33
34 19 0.37
35 4 0.08
36 3 0.06
37 8 0.16
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (36 bp):
ATTATTTTTTATATTATTATTATTATTTTATCATCT
Found at i:7125477 original size:20 final size:20
Alignment explanation
Indices: 7125454--7125515 Score: 58
Period size: 20 Copynumber: 3.1 Consensus size: 20
7125444 TTTACATCAT
7125454 TATTTTTTATATTATTATTA
1 TATTTTTTATATTATTATTA
7125474 TA-TTTTTACT-TGTATTATATA
1 TATTTTTTA-TAT-TATTAT-TA
* *
7125495 TATTTATTA-ATTATTTTTA
1 TATTTTTTATATTATTATTA
7125514 TA
1 TA
7125516 CATTATTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 11
0.73 0.04 0.23
Matches are distributed among these distances:
19 11 0.31
20 14 0.40
21 5 0.14
22 5 0.14
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (20 bp):
TATTTTTTATATTATTATTA
Found at i:7125481 original size:34 final size:34
Alignment explanation
Indices: 7125382--7125491 Score: 91
Period size: 34 Copynumber: 3.1 Consensus size: 34
7125372 ATATTGTAAG
*
7125382 ATTATTTTATTATATA-TATTAATATTATTTATTATCT
1 ATTATTTT-TTATATATTATT-ATATT-TTTA-CATCT
* * *
7125419 ATTATTTTTCACAAATTATTAT-TATTTTACATC-
1 ATTATTTTTTATATATTATTATAT-TTTTACATCT
* *
7125452 ATTATTTTTTATATTATTATTATATTTTTACTTGT
1 ATTATTTTTTATA-TATTATTATATTTTTACATCT
7125487 ATTAT
1 ATTAT
7125492 ATATATTTAT
Statistics
Matches: 59, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
33 11 0.19
34 18 0.31
35 11 0.19
36 7 0.12
37 12 0.20
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (34 bp):
ATTATTTTTTATATATTATTATATTTTTACATCT
Found at i:7125705 original size:32 final size:27
Alignment explanation
Indices: 7125679--7125730 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
7125669 TATGTATATC
7125679 ATATATTA-TCTATTATATTATTTATGT
1 ATATATTATTC-ATTATATTATTTATGT
*
7125706 TTATATTATTCATTATATTATTTAT
1 ATATATTATTCATTATATTATTTAT
7125731 AATTTTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.62
Consensus pattern (27 bp):
ATATATTATTCATTATATTATTTATGT
Found at i:7131451 original size:51 final size:51
Alignment explanation
Indices: 7131375--7131491 Score: 198
Period size: 51 Copynumber: 2.3 Consensus size: 51
7131365 CGAATCACAT
*
7131375 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGCAGCTAAAGCTACCAC
* *
7131426 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGCAGCTGAGGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGCAGCTAAAGCTACCAC
*
7131477 TTATCAGTTGTCACT
1 TTATCACTTGTCACT
7131492 GATCAGAAGT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.32
Consensus pattern (51 bp):
TTATCACTTGTCACTTGTCACTGATCAGATAAGTGCAGCTAAAGCTACCAC
Found at i:7134388 original size:44 final size:44
Alignment explanation
Indices: 7134338--7134426 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
7134328 TAATCCTCAC
*
7134338 ATGGTAAAAATTGGCTACAATAATTAAGGAAAGAGAAAAACACT
1 ATGGTAAAAATTGGCTACAATAATGAAGGAAAGAGAAAAACACT
*
7134382 ATGGTAAAAATTGGGTACAATAATGAAGGAAAGAGAAAAACACT
1 ATGGTAAAAATTGGCTACAATAATGAAGGAAAGAGAAAAACACT
7134426 A
1 A
7134427 AGGAAGATCC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.53, C:0.08, G:0.20, T:0.19
Consensus pattern (44 bp):
ATGGTAAAAATTGGCTACAATAATGAAGGAAAGAGAAAAACACT
Found at i:7135161 original size:21 final size:21
Alignment explanation
Indices: 7135137--7135182 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
7135127 TTCTGTTCTG
7135137 CTCCACCTCCCT-CACTGCTGC
1 CTCCACCT-CCTGCACTGCTGC
* *
7135158 CTCCGCCTCCTGCGCTGCTGC
1 CTCCACCTCCTGCACTGCTGC
7135179 CTCC
1 CTCC
7135183 GTTCTAAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 3 0.14
21 19 0.86
ACGTcount: A:0.04, C:0.57, G:0.15, T:0.24
Consensus pattern (21 bp):
CTCCACCTCCTGCACTGCTGC
Found at i:7140650 original size:9 final size:9
Alignment explanation
Indices: 7140636--7140685 Score: 68
Period size: 9 Copynumber: 5.6 Consensus size: 9
7140626 TTTTTATGTT
7140636 TTATGTAAG
1 TTATGTAAG
7140645 TTATGT-AG
1 TTATGTAAG
7140653 ATTATGTAAG
1 -TTATGTAAG
7140663 TTATGT-AG
1 TTATGTAAG
7140671 ATTATGTAAG
1 -TTATGTAAG
7140681 TTATG
1 TTATG
7140686 AAATTTGAAC
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
8 4 0.11
9 29 0.78
10 4 0.11
ACGTcount: A:0.32, C:0.00, G:0.22, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:7140659 original size:18 final size:18
Alignment explanation
Indices: 7140636--7140685 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
7140626 TTTTTATGTT
7140636 TTATGTAAGTTATGTAGA
1 TTATGTAAGTTATGTAGA
7140654 TTATGTAAGTTATGTAGA
1 TTATGTAAGTTATGTAGA
7140672 TTATGTAAGTTATG
1 TTATGTAAGTTATG
7140686 AAATTTGAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.32, C:0.00, G:0.22, T:0.46
Consensus pattern (18 bp):
TTATGTAAGTTATGTAGA
Found at i:7140765 original size:9 final size:9
Alignment explanation
Indices: 7140751--7140917 Score: 136
Period size: 9 Copynumber: 17.6 Consensus size: 9
7140741 ATGTATTAGT
7140751 TAAGTTATG
1 TAAGTTATG
7140760 TAAGTTGTTATG
1 TAA---GTTATG
* *
7140772 TACGTTATA
1 TAAGTTATG
*
7140781 TGAGTTATG
1 TAAGTTATG
*
7140790 TAAATTATG
1 TAAGTTATG
7140799 TAAGTTATG
1 TAAGTTATG
*
7140808 TGAGTTATG
1 TAAGTTATG
7140817 TAAGTTGTTATG
1 TAA---GTTATG
*
7140829 TAAATTATG
1 TAAGTTATG
7140838 TAAGTTATG
1 TAAGTTATG
* *
7140847 TGAGTTATA
1 TAAGTTATG
7140856 TAAGTTGTTATG
1 TAA---GTTATG
*
7140868 TAAATTATG
1 TAAGTTATG
*
7140877 TAAGTTATA
1 TAAGTTATG
*
7140886 TGAGTTATG
1 TAAGTTATG
7140895 TAAGTTATG
1 TAAGTTATG
* *
7140904 TAATTTATT
1 TAAGTTATG
7140913 TAAGT
1 TAAGT
7140918 AATGGTCAAT
Statistics
Matches: 124, Mismatches: 25, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
9 99 0.80
12 25 0.20
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:7140798 original size:39 final size:39
Alignment explanation
Indices: 7140755--7140917 Score: 139
Period size: 39 Copynumber: 4.3 Consensus size: 39
7140745 ATTAGTTAAG
7140755 TTATGTAAGTTGTTATGT-ACGTTATATG-AGTTATGTAAA
1 TTATGTAAG-TGTTATGTGA-GTTATATGTAGTTATGTAAA
* *
7140794 TTATGTAA--GTTATGTGAGTTATGTAAGTTGTTATGTAAA
1 TTATGTAAGTGTTATGTGAGTTA--TATGTAGTTATGTAAA
*
7140833 TTATGTAA--GTTATGTGAGTTATATAAGTTGTTATGTAAA
1 TTATGTAAGTGTTATGTGAGTTATAT--GTAGTTATGTAAA
* *
7140872 TTATGTAA--GTTATATGAG-T-TATGTAAGTTATGTAAT
1 TTATGTAAGTGTTATGTGAGTTATATGT-AGTTATGTAAA
*
7140908 TTATTTAAGT
1 TTATGTAAGT
7140918 AATGGTCAAT
Statistics
Matches: 108, Mismatches: 7, Indels: 19
0.81 0.05 0.14
Matches are distributed among these distances:
35 2 0.02
36 27 0.25
37 6 0.06
38 4 0.04
39 69 0.64
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (39 bp):
TTATGTAAGTGTTATGTGAGTTATATGTAGTTATGTAAA
Found at i:7140844 original size:57 final size:57
Alignment explanation
Indices: 7140751--7140917 Score: 178
Period size: 57 Copynumber: 2.9 Consensus size: 57
7140741 ATGTATTAGT
* * * *
7140751 TAAGTTATGTAAGTTGTTATGTACGTTATATGAGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAGTTATGTAAATTATATAAGTTATG
* * * *
7140808 TGAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATGTGAGTTATATAAGTTGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAGTTATGTAAATTATATAA---GTTATG
* * * *
7140868 TAAATTATGTAAGTT-ATATG--AGTTATGTAAGTTATGTAATTTATTTAAGT
1 TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAGTTATGTAAATTATATAAGT
7140918 AATGGTCAAT
Statistics
Matches: 92, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
54 2 0.02
57 67 0.73
59 4 0.04
60 19 0.21
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (57 bp):
TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAGTTATGTAAATTATATAAGTTATG
Found at i:7141521 original size:241 final size:241
Alignment explanation
Indices: 7141098--7142066 Score: 1803
Period size: 241 Copynumber: 4.0 Consensus size: 241
7141088 TTAAGGTTAT
7141098 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
*
7141163 TCATCATATGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
66 TCATCATAAGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
*
7141228 ACCTGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
7141293 GGTCAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
196 GGTCAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
7141339 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
* *
7141404 TCATCATACGTGGCGTTGTTACACCTAGGGGGGATCCATTATATCTTACAGCTCGATATAAGGCA
66 TCATCATAAGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
7141469 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
7141534 GGTCAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
196 GGTCAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
* *
7141580 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
*
7141645 TCATCATAAGTGGCGTTGTTACACCTTGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
66 TCATCATAAGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
7141710 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
7141775 GGTCAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
196 GGTCAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
* * *
7141821 ATAAATATTTAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
*
7141886 TCATCATAAGTGGCGTTGTTACACCTTGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
66 TCATCATAAGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
* * *
7141951 ACCTGTCAGGTTTCCAGCCTATATACTTTGACTCTTTAAAATATTTAAAATAATGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
*
7142016 GGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTA
196 GGTCAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
7142062 ATAAA
1 ATAAA
7142067 ATTAATTCAT
Statistics
Matches: 715, Mismatches: 13, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
241 715 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (241 bp):
ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
TCATCATAAGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
GGTCAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
Found at i:7144146 original size:137 final size:137
Alignment explanation
Indices: 7143900--7144217 Score: 609
Period size: 137 Copynumber: 2.3 Consensus size: 137
7143890 CATTGGGCCT
** *
7143900 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCAAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
7143965 AGCCCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
7144030 CATATGC
131 CATATGC
7144037 AAGCCCATTTGGGTAACAGTGGTACTGGGCAAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCAAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
7144102 AGCCCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
7144167 CATATGC
131 CATATGC
7144174 AAGCCCATTTGGGTAACAGTGGTACTGGGCAAGAGCCCTTTTCA
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCAAGAGCCCTTTTCA
7144218 AACATTTTCC
Statistics
Matches: 178, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 178 1.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCAAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:7145680 original size:26 final size:26
Alignment explanation
Indices: 7145644--7145805 Score: 247
Period size: 26 Copynumber: 6.2 Consensus size: 26
7145634 CATGAAATTC
7145644 TTATCATGAAACATTTACCTAA-CTCA
1 TTATCATGAAACATTTACCTAACCT-A
7145670 TTATCATGAAACATTTACCTAA-CTCA
1 TTATCATGAAACATTTACCTAACCT-A
*
7145696 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
* *
7145722 TTATCATGAAGCATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
7145748 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
7145774 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
7145800 TTATCA
1 TTATCA
7145806 ATTTGTACCA
Statistics
Matches: 128, Mismatches: 7, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
26 126 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:7145777 original size:78 final size:78
Alignment explanation
Indices: 7145644--7145805 Score: 281
Period size: 78 Copynumber: 2.1 Consensus size: 78
7145634 CATGAAATTC
*
7145644 TTATCATGAAACATTTACCTAACTCATTATCATGAAACATTTACCTAACTCATTATCATGGAACA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACTCATTATCATGGAACA
7145709 TTTACCTAACCTA
66 TTTACCTAACCTA
* *
7145722 TTATCATGAAGCATTTACCTAACCCATTATCATGGAACATTTACCTAAC-CTATTATCATGGAAC
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACTC-ATTATCATGGAAC
7145786 ATTTACCTAACCTA
65 ATTTACCTAACCTA
7145800 TTATCA
1 TTATCA
7145806 ATTTGTACCA
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
77 1 0.01
78 79 0.99
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.35
Consensus pattern (78 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACTCATTATCATGGAACA
TTTACCTAACCTA
Found at i:7147656 original size:25 final size:25
Alignment explanation
Indices: 7147619--7147690 Score: 117
Period size: 25 Copynumber: 2.9 Consensus size: 25
7147609 GGAGGAGATG
7147619 GGGAAATTGGGGATTTCAGAATTTA
1 GGGAAATTGGGGATTTCAGAATTTA
* *
7147644 GGGAAATTTGGGATTTAAGAATTTA
1 GGGAAATTGGGGATTTCAGAATTTA
*
7147669 GGGAAATTGGGGATTACAGAAT
1 GGGAAATTGGGGATTTCAGAAT
7147691 CGGGGCAAAC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.35, C:0.03, G:0.32, T:0.31
Consensus pattern (25 bp):
GGGAAATTGGGGATTTCAGAATTTA
Found at i:7148325 original size:22 final size:21
Alignment explanation
Indices: 7148286--7148333 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
7148276 TATATATAAA
*
7148286 TTAATTAAATAAAAAATTGATG
1 TTAATTAAATAAAAAATT-ACG
* * *
7148308 TTAATTACATCAATAATTACG
1 TTAATTAAATAAAAAATTACG
7148329 TTAAT
1 TTAAT
7148334 ATTTTACAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.40
Consensus pattern (21 bp):
TTAATTAAATAAAAAATTACG
Found at i:7149570 original size:38 final size:35
Alignment explanation
Indices: 7149509--7149626 Score: 126
Period size: 31 Copynumber: 3.5 Consensus size: 35
7149499 TCAATCATGC
*
7149509 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
*
7149548 ACTGGGCCGAAGCATTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
7149579 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
7149610 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
7149627 ACTGTAAACG
Statistics
Matches: 76, Mismatches: 3, Indels: 8
0.87 0.03 0.09
Matches are distributed among these distances:
31 48 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 13 0.17
39 11 0.14
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:7149623 original size:31 final size:31
Alignment explanation
Indices: 7149532--7149626 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
7149522 CCTTTTCATA
* *
7149532 TTTCATATTTCATAATACTGGGCCGAAGCAT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
7149563 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
7149594 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
7149625 TT
1 TT
7149627 ACTGTAAACG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:7149897 original size:47 final size:48
Alignment explanation
Indices: 7149818--7149959 Score: 216
Period size: 47 Copynumber: 3.0 Consensus size: 48
7149808 GCTTTATCAT
* *
7149818 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
*
7149867 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
7149914 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
7149960 TTCACTTCCT
Statistics
Matches: 88, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
47 45 0.51
48 31 0.35
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:7149923 original size:71 final size:72
Alignment explanation
Indices: 7149817--7149960 Score: 211
Period size: 71 Copynumber: 2.0 Consensus size: 72
7149807 TGCTTTATCA
* *
7149817 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTCAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
7149882 GCCCTTT
66 GCCCTTT
* * **
7149889 TATAACTGG-GGCATAAGCC-CTTTCGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTCAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
7149952 AGCCCTTT
65 AGCCCTTT
7149960 T
1 T
7149961 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
71 52 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.28
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTCAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:7149960 original size:24 final size:24
Alignment explanation
Indices: 7149818--7149960 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
7149808 GCTTTATCAT
*
7149818 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
7149843 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
7149867 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
**
7149890 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTA
*
7149914 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
7149938 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
7149961 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
23 22 0.20
24 75 0.69
25 12 0.11
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:7150036 original size:20 final size:20
Alignment explanation
Indices: 7150011--7150070 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
7150001 TATGATTACC
7150011 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
7150031 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
7150051 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
7150071 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:7151377 original size:27 final size:27
Alignment explanation
Indices: 7151315--7151379 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
7151305 GGGCATATTC
7151315 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
7151342 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
7151369 GTCTTTTTACC
1 GTCATTTTACC
7151380 TTTTAGGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:7151463 original size:27 final size:26
Alignment explanation
Indices: 7151433--7151488 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
7151423 GTAAATCAAC
*
7151433 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTACTTCTA-TAATTTT-T
*
7151460 AAACCAATGGTACTTCTATAATTTTT
1 AAACCAAAGGTACTTCTATAATTTTT
7151486 AAA
1 AAA
7151489 AAGTCAAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (26 bp):
AAACCAAAGGTACTTCTATAATTTTT
Found at i:7151529 original size:27 final size:27
Alignment explanation
Indices: 7151441--7151579 Score: 95
Period size: 27 Copynumber: 5.0 Consensus size: 27
7151431 ACAAACCAAA
* * **
7151441 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTCTGTAATTTTGTAAATCAGG
* * *
7151468 GGTACTTCTATAATTTT-TAAAAAGTCAAG
1 GGTATTTCTGTAATTTTGT--AAA-TCAGG
*
7151497 GGTATTTCTGTAACTTTGTAAATCAGG
1 GGTATTTCTGTAATTTTGTAAATCAGG
** *
7151524 GGTATTT-TGGTAATTTTACAAAT-TGAG
1 GGTATTTCT-GTAATTTTGTAAATCAG-G
*
7151551 GGTATTTCGGTAATTTTGTAAATCGAGG
1 GGTATTTCTGTAATTTTGTAAATC-AGG
7151579 G
1 G
7151580 TAAAACAGTA
Statistics
Matches: 86, Mismatches: 17, Indels: 17
0.72 0.14 0.14
Matches are distributed among these distances:
26 3 0.03
27 56 0.65
28 8 0.09
29 18 0.21
30 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGTATTTCTGTAATTTTGTAAATCAGG
Found at i:7151580 original size:27 final size:27
Alignment explanation
Indices: 7151532--7151985 Score: 296
Period size: 27 Copynumber: 16.9 Consensus size: 27
7151522 GGGGTATTTT
* * **
7151532 GGTAATTTTACAAATTGAGGGTATTTC
1 GGTAATTTTATAAATCGAGGGTAAATC
* *
7151559 GGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATC
* * *
7151586 AGTAA-TTTGTAAATCAAGGGTAAAAT-
1 GGTAATTTTATAAATCGAGGGT-AAATC
* * *
7151612 AGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATC
* * *
7151639 GGTAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATC
* * * *
7151666 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATC
* * *
7151693 GATAATTATGTAAATC-AGGGGTAAAAT-
1 GGTAATTTTATAAATCGA-GGGT-AAATC
* * * * *
7151720 GGTAATTATGTAAATTGTGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATC
* * *
7151747 GGTAATTCTGTAAGTCGAGGGTAAAAT-
1 GGTAATTTTATAAATCGAGGGT-AAATC
* * * *
7151774 GATAATTATGTAAATC-AGGGGTAAAAC
1 GGTAATTTTATAAATCGA-GGGTAAATC
* * * *
7151801 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 GGTAATTTTATAAATCGA-GGGTAAATC
*
7151828 GGTAATTCTATAAATCGAGGGTAAAAT-
1 GGTAATTTTATAAATCGAGGGT-AAATC
* * *
7151855 AGTAATTCTATAAA-CTGAGGGTAAAAC
1 GGTAATTTTATAAATC-GAGGGTAAATC
* * *
7151882 GGTAATTCTATAAATTGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATC
* *
7151909 GGTAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATC
* ** *
7151936 GGTAATTCTATAAATCGAGGGTACTTT
1 GGTAATTTTATAAATCGAGGGTAAATC
* *
7151963 GGTAATTTTACAAGTCGAGGGTA
1 GGTAATTTTATAAATCGAGGGTA
7151986 TTTCAATAAT
Statistics
Matches: 357, Mismatches: 54, Indels: 32
0.81 0.12 0.07
Matches are distributed among these distances:
26 35 0.10
27 312 0.87
28 10 0.03
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.30
Consensus pattern (27 bp):
GGTAATTTTATAAATCGAGGGTAAATC
Found at i:7151591 original size:54 final size:54
Alignment explanation
Indices: 7151532--7151985 Score: 384
Period size: 54 Copynumber: 8.4 Consensus size: 54
7151522 GGGGTATTTT
* * ** * *
7151532 GGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATCGGTAATTCTATAAATCGAGGGTAAAAC
* * * *
7151586 AGTAA-TTTGTAAATCAAGGGTAAAAT-AGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGT-AAATCGGTAATTCTATAAATCGAGGGTAAAAC
* * * * *
7151639 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATCGGTAATTCTATAAATCGAGGGTAAAAC
* * * * * * *
7151693 GATAATTATGTAAATC-AGGGGTAAAAT-GGTAATTATGTAAATTGTGGGTAAAAC
1 GGTAATTTTATAAATCGA-GGGT-AAATCGGTAATTCTATAAATCGAGGGTAAAAC
* * * * * *
7151747 GGTAATTCTGTAAGTCGAGGGTAAAAT-GATAATTATGTAAATC-AGGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGT-AAATCGGTAATTCTATAAATCGA-GGGTAAAAC
* * * * *
7151801 GGTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAT
1 GGTAATTTTATAAATCGA-GGGTAAATCGGTAATTCTATAAATCGAGGGTAAAAC
* * * *
7151855 AGTAATTCTATAAA-CTGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAAC
1 GGTAATTTTATAAATC-GAGGGTAAATCGGTAATTCTATAAATCGAGGGTAAAAC
* * ****
7151909 GGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTACTTT
1 GGTAATTTTATAAATCGAGGGTAAATCGGTAATTCTATAAATCGAGGGTAAAAC
* *
7151963 GGTAATTTTACAAGTCGAGGGTA
1 GGTAATTTTATAAATCGAGGGTA
7151986 TTTCAATAAT
Statistics
Matches: 334, Mismatches: 53, Indels: 26
0.81 0.13 0.06
Matches are distributed among these distances:
53 48 0.14
54 279 0.84
55 7 0.02
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.30
Consensus pattern (54 bp):
GGTAATTTTATAAATCGAGGGTAAATCGGTAATTCTATAAATCGAGGGTAAAAC
Found at i:7151969 original size:81 final size:81
Alignment explanation
Indices: 7151531--7151958 Score: 488
Period size: 81 Copynumber: 5.3 Consensus size: 81
7151521 AGGGGTATTT
* * * *** * * * *
7151531 TGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACAGTAATT-TG
1 TGGTAATTCTATAAATCGAGGGTAAAACGGTAATTATGTAAATTGAGGGTAAAACGGTAATTCTA
*
7151595 TAAATCAAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * *
7151611 TAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTG
1 TGGTAATTCTATAAATCGAGGGTAAAACGGTAATTATGTAAATTGAGGGTAAAACGGTAATTCTA
*
7151676 TAAGTCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * * * *
7151692 CGATAATTATGTAAATC-AGGGGTAAAATGGTAATTATGTAAATTGTGGGTAAAACGGTAATTCT
1 TGGTAATTCTATAAATCGA-GGGTAAAACGGTAATTATGTAAATTGAGGGTAAAACGGTAATTCT
* *
7151756 GTAAGTCGAGGGTAAAA
65 ATAAATCGAGGGTAAAA
* * *
7151773 TGATAATTATGTAAATC-AGGGGTAAAACGGTAATTATGTAAATT-AGGGGTAAAACGGTAATTC
1 TGGTAATTCTATAAATCGA-GGGTAAAACGGTAATTATGTAAATTGA-GGGTAAAACGGTAATTC
7151836 TATAAATCGAGGGTAAAA
64 TATAAATCGAGGGTAAAA
* * * *
7151854 TAGTAATTCTATAAA-CTGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTT
1 TGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTATGTAAATTGAGGGTAAAACGGTAATTCT
*
7151918 ACAAATCGAGGGTAAAA
65 ATAAATCGAGGGTAAAA
*
7151935 CGGTAATTCTATAAATCGAGGGTA
1 TGGTAATTCTATAAATCGAGGGTA
7151959 CTTTGGTAAT
Statistics
Matches: 306, Mismatches: 35, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
80 55 0.18
81 248 0.81
82 3 0.01
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (81 bp):
TGGTAATTCTATAAATCGAGGGTAAAACGGTAATTATGTAAATTGAGGGTAAAACGGTAATTCTA
TAAATCGAGGGTAAAA
Found at i:7151995 original size:27 final size:27
Alignment explanation
Indices: 7151965--7152029 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
7151955 GGTACTTTGG
7151965 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
* *
7151992 TAATTTTACAGGTCGAGGGTATTTCAG
1 TAATTTTACAAGTCGAGGGTATTTCAA
*
7152019 TAATTTCACAA
1 TAATTTTACAA
7152030 ATTAGGGGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.37
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:7152008 original size:54 final size:52
Alignment explanation
Indices: 7151948--7152151 Score: 185
Period size: 54 Copynumber: 3.8 Consensus size: 52
7151938 TAATTCTATA
* * * *
7151948 AATCGAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTAC
1 AATCGAGGGTA-TTTGGTAATTTTACAAATCAAGGGTATTTTAGTAATTTTAC
* * * * * *
7152001 AGGTCGAGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTAC
1 A-ATCGAGGGTATTT-GGTAATTTTACAAATCAAGGGTATTTTAGTAATTTTAC
* * * *
7152055 AAACTAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTAC
1 AATCGAGGGTA-TTTGGTAATTTTACAAATCAAGGGTATTTTAGTAATTTTAC
* * *
7152108 AAAT-TAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTA
1 -AATCGA-GGGTA-TTTGGTAATTTTACAAATCAAGGGTATTTTA
7152152 AACATGGATA
Statistics
Matches: 125, Mismatches: 21, Indels: 9
0.81 0.14 0.06
Matches are distributed among these distances:
53 44 0.35
54 81 0.65
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (52 bp):
AATCGAGGGTATTTGGTAATTTTACAAATCAAGGGTATTTTAGTAATTTTAC
Found at i:7152038 original size:27 final size:27
Alignment explanation
Indices: 7152008--7152150 Score: 171
Period size: 27 Copynumber: 5.3 Consensus size: 27
7151998 TACAGGTCGA
** * *
7152008 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
7152035 GGGTATTTTGGTAATTTTACAAACTA-
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
7152061 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
7152088 GGGTATTTTAGTAATTTTACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
7152115 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
7152142 GGGTATTTT
1 GGGTATTTT
7152151 AAACATGGAT
Statistics
Matches: 99, Mismatches: 16, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
26 24 0.24
27 75 0.76
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:7153775 original size:26 final size:26
Alignment explanation
Indices: 7153746--7153853 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
7153736 TGGTACAAAT
7153746 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
7153772 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
7153798 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
7153824 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
7153850 TGAT
1 TGAT
7153854 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:7155814 original size:135 final size:136
Alignment explanation
Indices: 7155638--7155917 Score: 458
Period size: 135 Copynumber: 2.1 Consensus size: 136
7155628 TAGTCTCCCT
7155638 AAAT-GGCTTGCATATGTTTACTGATGTTGCATGCATTTTGAAATGGGCCAATGGGCCATACTGT
1 AAATGGGCTTGCATATGTTTACTGATGTTGCATGCATTTTGAAATGGG-CAATGGGCCATACTGT
* * *
7155702 TATCTGAATAA-GGGCTAAGGCTCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCATT
65 TATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAATACCACT
7155766 GTTACCC
130 GTTACCC
* * *
7155773 AAATGGGCTTGCATA-GTTTACTTATGTTGCATGTATTTTGAAATGGGCTATGGGCCATACTGTT
1 AAATGGGCTTGCATATGTTTACTGATGTTGCATGCATTTTGAAATGGGCAATGGGCCATACTGTT
7155837 ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAATACCACTG
66 ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAATACCACTG
*
7155902 TTACCT
131 TTACCC
*
7155908 GAATGGGCTT
1 AAATGGGCTT
7155918 ATGCCCAATG
Statistics
Matches: 135, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
134 26 0.19
135 99 0.73
136 10 0.07
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (136 bp):
AAATGGGCTTGCATATGTTTACTGATGTTGCATGCATTTTGAAATGGGCAATGGGCCATACTGTT
ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAATACCACTG
TTACCC
Found at i:7156771 original size:17 final size:17
Alignment explanation
Indices: 7156751--7156849 Score: 144
Period size: 17 Copynumber: 5.6 Consensus size: 17
7156741 CAATGATATG
7156751 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
7156768 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
7156786 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
7156803 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
7156821 CAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
7156840 CAATCTTAGA
1 CAATCTTAGA
7156850 AGATATGATT
Statistics
Matches: 74, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 31 0.42
18 31 0.42
19 11 0.15
20 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:7156789 original size:35 final size:35
Alignment explanation
Indices: 7156743--7156849 Score: 187
Period size: 35 Copynumber: 3.0 Consensus size: 35
7156733 ATAATCTTCA
7156743 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
7156779 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
7156814 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
7156850 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
35 51 0.74
36 5 0.07
37 13 0.19
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.36
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:7156791 original size:18 final size:18
Alignment explanation
Indices: 7156751--7156849 Score: 157
Period size: 18 Copynumber: 5.6 Consensus size: 18
7156741 CAATGATATG
7156751 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
7156768 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
7156786 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
7156803 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
7156821 CAATCTTAGATATGATATA
1 CAATCTTAGATATGAT-TA
7156840 CAATCTTAGA
1 CAATCTTAGA
7156850 AGATATGATT
Statistics
Matches: 75, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
17 31 0.41
18 33 0.44
19 11 0.15
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.36
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Found at i:7157171 original size:9 final size:9
Alignment explanation
Indices: 7157157--7157267 Score: 51
Period size: 8 Copynumber: 12.8 Consensus size: 9
7157147 ATTTTTAATT
7157157 TATTATATA
1 TATTATATA
7157166 TATTAT-T-
1 TATTATATA
7157173 TATTATATA
1 TATTATATA
7157182 T-TTATAT-
1 TATTATATA
*
7157189 T-TTCA-AAA
1 TATT-ATATA
* *
7157197 T-TTGTAAA
1 TATTATATA
7157205 TTATTATTATA
1 -TATTA-TATA
*
7157216 TATTATATT
1 TATTATATA
7157225 TAACTTATATA
1 T-A-TTATATA
*
7157236 TCTTATATA
1 TATTATATA
*
7157245 T-TTATTTA
1 TATTATATA
*
7157253 T-TTATTTA
1 TATTATATA
7157261 TATTATA
1 TATTATA
7157268 CATTATTTTA
Statistics
Matches: 82, Mismatches: 9, Indels: 22
0.73 0.08 0.19
Matches are distributed among these distances:
7 10 0.12
8 30 0.37
9 24 0.29
10 8 0.10
11 10 0.12
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (9 bp):
TATTATATA
Found at i:7157175 original size:16 final size:15
Alignment explanation
Indices: 7157154--7157186 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
7157144 CTTATTTTTA
7157154 ATTTATTATATATATT
1 ATTTATTATATAT-TT
7157170 ATTTATTATATATTT
1 ATTTATTATATATTT
7157185 AT
1 AT
7157187 ATTTTCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
ATTTATTATATATTT
Found at i:7157221 original size:7 final size:7
Alignment explanation
Indices: 7157204--7157312 Score: 51
Period size: 7 Copynumber: 16.7 Consensus size: 7
7157194 AAATTTGTAA
7157204 ATTAT-T
1 ATTATAT
7157210 ATTATAT
1 ATTATAT
7157217 ATTATAT
1 ATTATAT
7157224 -TTA-ACT
1 ATTATA-T
7157230 -TATATAT
1 AT-TATAT
*
7157237 CTTATAT
1 ATTATAT
7157244 ATT-TAT
1 ATTATAT
*
7157250 -TTATTT
1 ATTATAT
7157256 ATT-TAT
1 ATTATAT
*
7157262 ATTATAC
1 ATTATAT
7157269 ATTAT-T
1 ATTATAT
* *
7157275 -TTAAAA
1 ATTATAT
*
7157281 ACTTACAT
1 A-TTATAT
7157289 -TT-TAT
1 ATTATAT
7157294 ATTATAT
1 ATTATAT
*
7157301 ATTATAA
1 ATTATAT
7157308 ATTAT
1 ATTAT
7157313 TTCATTTATT
Statistics
Matches: 79, Mismatches: 11, Indels: 25
0.69 0.10 0.22
Matches are distributed among these distances:
5 8 0.10
6 24 0.30
7 41 0.52
8 6 0.08
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.57
Consensus pattern (7 bp):
ATTATAT
Found at i:7157277 original size:25 final size:26
Alignment explanation
Indices: 7157209--7157277 Score: 79
Period size: 25 Copynumber: 2.7 Consensus size: 26
7157199 TGTAAATTAT
7157209 TATTATATATTATATTTAACTTATATA
1 TATTATATATTATATTT-ACTTATATA
* * *
7157236 TCTTATATATT-TATTTATTTATTTA
1 TATTATATATTATATTTACTTATATA
*
7157261 TATTATACATTAT-TTTA
1 TATTATATATTATATTTA
7157278 AAAACTTACA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 20 0.56
26 6 0.17
27 10 0.28
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (26 bp):
TATTATATATTATATTTACTTATATA
Found at i:7163834 original size:40 final size:40
Alignment explanation
Indices: 7163769--7163945 Score: 277
Period size: 40 Copynumber: 4.5 Consensus size: 40
7163759 ACCCAAGTAT
7163769 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
7163808 CTTCGGGTCCTAGCCCGGATACAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
7163848 CTTCGGGTCTTAGCCCGGATATAGCAACTCGTACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
**
7163888 CTTCGGGTCTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
7163928 CTTCGGGTCTTAGCCCGG
1 CTTCGGGTCTTAGCCCGG
7163946 TTATCATCCG
Statistics
Matches: 128, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 1 0.01
39 10 0.08
40 117 0.91
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:7166644 original size:29 final size:29
Alignment explanation
Indices: 7166612--7166713 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
7166602 GATTAAAGAA
7166612 CTCGCACACATAGTGCCTCAATTACCAAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
* **
7166641 CTCGCACACATAGTG-CTCGATTGAAGAA-
1 CTCGCACACATAGTGCCTCAATT-ACCAAT
* **
7166669 CTCGCACACATAGTGCCTCAACTACTGAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
*
7166698 CTGGCACACATAGTGC
1 CTCGCACACATAGTGC
7166714 TCGGTTGAAG
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
28 23 0.38
29 38 0.62
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACCAAT
Found at i:7166659 original size:57 final size:57
Alignment explanation
Indices: 7166589--7166745 Score: 233
Period size: 57 Copynumber: 2.8 Consensus size: 57
7166579 CTGATTTCGT
* * *
7166589 ACACATAGCGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATTACCAATCTCGC
1 ACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATCTCGC
** *
7166646 ACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACTGATCTGGC
1 ACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATCTCGC
* * *
7166703 ACACATAGTGCTCGGTTGAAGAACTTGCACACACAGTGCCTCA
1 ACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCA
7166746 TAACTCCTCG
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 91 1.00
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (57 bp):
ACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATCTCGC
Found at i:7166681 original size:28 final size:27
Alignment explanation
Indices: 7166589--7166741 Score: 135
Period size: 28 Copynumber: 5.4 Consensus size: 27
7166579 CTGATTTCGT
*
7166589 ACACATAGCGCTCGATTAAAGAACTCGC
1 ACACATAGTGCTCGATT-AAGAACTCGC
* **
7166617 ACACATAGTGCCTCAATTACCAATCTCGC
1 ACACATAGTG-CTCGATTAAGAA-CTCGC
7166646 ACACATAGTGCTCGATTGAAGAACTCGC
1 ACACATAGTGCTCGATT-AAGAACTCGC
* * * * *
7166674 ACACATAGTGCCTCAACTACTGATCTGGC
1 ACACATAGTG-CTCGATTA-AGAACTCGC
* *
7166703 ACACATAGTGCTCGGTTGAAGAACTTGC
1 ACACATAGTGCTCGATT-AAGAACTCGC
*
7166731 ACACACAGTGC
1 ACACATAGTGC
7166742 CTCATAACTC
Statistics
Matches: 100, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
28 54 0.54
29 46 0.46
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (27 bp):
ACACATAGTGCTCGATTAAGAACTCGC
Found at i:7170755 original size:40 final size:40
Alignment explanation
Indices: 7170686--7170906 Score: 258
Period size: 40 Copynumber: 5.5 Consensus size: 40
7170676 TATTCGAATG
* *
7170686 ATATTCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
*
7170726 ATATCCGGACTAAGATCCGAAGGCATTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCT-AG-TGACT
* *
7170766 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
*
7170806 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* * *
7170846 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
7170886 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGAT-CCGAAG
7170907 ATACTTGGGT
Statistics
Matches: 158, Mismatches: 14, Indels: 19
0.83 0.07 0.10
Matches are distributed among these distances:
38 1 0.01
39 14 0.09
40 137 0.87
41 6 0.04
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:7170889 original size:80 final size:80
Alignment explanation
Indices: 7170686--7170906 Score: 290
Period size: 80 Copynumber: 2.8 Consensus size: 80
7170676 TATTCGAATG
* * * *
7170686 ATATTCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAG-TCCCGAAGGC
*
7170750 ATTTGTGTGAGTTGCT
65 ATTTATGTGAGTTGCT
*
7170766 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
7170831 TTTATGCT-AG-TGACT
66 TTTATG-TGAGTTG-CT
* * *
7170846 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAG
7170907 ATACTTGGGT
Statistics
Matches: 127, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
79 17 0.13
80 108 0.85
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTTATGTGAGTTGCT
Found at i:7173234 original size:11 final size:11
Alignment explanation
Indices: 7173214--7173278 Score: 62
Period size: 11 Copynumber: 5.7 Consensus size: 11
7173204 CTTCTATTTC
7173214 AAAAAAAAAAG
1 AAAAAAAAAAG
*
7173225 AAAAAGAAAAG
1 AAAAAAAAAAG
7173236 AAAAAAATAAA-
1 AAAAAAA-AAAG
7173247 AATAAAAATAAA-
1 AA-AAAAA-AAAG
*
7173259 AAAGAGAAAAAG
1 AAA-AAAAAAAG
7173271 AAAAAAAA
1 AAAAAAAA
7173279 TGGAGAGGCC
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
11 26 0.57
12 20 0.43
ACGTcount: A:0.86, C:0.00, G:0.09, T:0.05
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:7173247 original size:5 final size:6
Alignment explanation
Indices: 7173214--7173260 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
7173204 CTTCTATTTC
* * *
7173214 AAAAA- AAAAAG AAAAAG AAAAGAA AAAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAA-AT AAAAAT AAAAAT AAAAAT AAAAA
7173261 AGAGAAAAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
5 5 0.13
6 28 0.74
7 5 0.13
ACGTcount: A:0.87, C:0.00, G:0.06, T:0.06
Consensus pattern (6 bp):
AAAAAT
Found at i:7177060 original size:44 final size:44
Alignment explanation
Indices: 7177011--7177149 Score: 108
Period size: 44 Copynumber: 3.2 Consensus size: 44
7177001 ACCTGTTACC
7177011 CTACTGCTTGGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCA
1 CTACTGCTTGGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCA
* * * * * * * *
7177055 CTACTGCTTAGGGAG-ATAA-GATCTGCAAT-TT-AACCTGTTACC-
1 CTACTGCTT-GGGGGTTTAAGGTTCTTC-GTCTTCGATCTGCT-CCA
* * * *
7177097 CTATTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTACTCTA
1 CTACTGCTTGGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCA
7177141 CTACTGCTT
1 CTACTGCTT
7177150 AGGGAGATAA
Statistics
Matches: 66, Mismatches: 21, Indels: 16
0.64 0.20 0.16
Matches are distributed among these distances:
41 3 0.05
42 17 0.26
43 17 0.26
44 25 0.38
45 4 0.06
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (44 bp):
CTACTGCTTGGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCA
Found at i:7177061 original size:86 final size:86
Alignment explanation
Indices: 7176916--7177202 Score: 319
Period size: 86 Copynumber: 3.3 Consensus size: 86
7176906 TAATTTTCAG
* * * * * * *
7176916 CCTGTTACCCTACTGCTTAAGGGATTAAGGCTT-GTCATCTTTGATCTGTTTCC-CTACTGCCTA
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGG-TTCTTCGTCTTCGATCTG-CTCCACTACTGCTTA
** * *
7176979 GGG-TTTTAGATCTGTATACTCAA
64 GGGAGATAAGATCTGCA-ACTCAA
*
7177002 CCTGTTACCCTACTGCTTGGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGG
* *
7177067 GAGATAAGATCTGCAATTTAA
66 GAGATAAGATCTGCAACTCAA
* * *
7177088 CCTGTTACCCTATTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTACTCTACTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGG
* ***
7177153 GAGATAAGATCTGCAATTTGG
66 GAGATAAGATCTGCAACTCAA
* *
7177174 TCTGTTTCCCTACTGCTTAGGGGTTTAAG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAG
7177203 ACCCTATGAA
Statistics
Matches: 175, Mismatches: 23, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
85 5 0.03
86 161 0.92
87 9 0.05
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.37
Consensus pattern (86 bp):
CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGG
GAGATAAGATCTGCAACTCAA
Found at i:7177410 original size:44 final size:43
Alignment explanation
Indices: 7177351--7177811 Score: 304
Period size: 43 Copynumber: 10.6 Consensus size: 43
7177341 AAATCTAGCT
* * *
7177351 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATA
1 TGTTTCCCTACTGCTTAGGGGGTT-AAGCCCTTCATCTTTGATC
** *
7177395 TGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATC
1 TGTTTCCCTACTGCTTAGGGGGTTAAGCCCTTCATCTTTGATC
* * ** * * *
7177438 TGTTTCCCTACTGCTTAGGGAGATAAGATCTGCA-ATTTGGTC
1 TGTTTCCCTACTGCTTAGGGGGTTAAGCCCTTCATCTTTGATC
* * * * * *
7177480 TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATC
1 TGTTTCCCTACTGCTTAGGGGGTTAAG-CCCTTCATCTTTGATC
** * * *
7177524 TGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATC-TTCAGCC
1 TGTTTCCCTACTGCTTAGGGGGTTAAGCCCT-T-CATCTTTGA-TC
* * * ** *
7177569 TGTTACCCTACTGCTCAGGGGGTTAAAG--CTTGTAAATTTG-GC
1 TGTTTCCCTACTGCTTAGGGGGTT-AAGCCCTT-CATCTTTGATC
* *
7177611 TTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATC
1 -TGTTTCCCTACTGCTTAGGGGGTT-AAGCCCTTCATCTTTGATC
* ** *
7177656 TGTTTCCCTACTGCTTAAGGGGTTAAGATCTTCATCTTCGATC
1 TGTTTCCCTACTGCTTAGGGGGTTAAGCCCTTCATCTTTGATC
* * * * ** * * * *
7177699 TGTTTCCCTACTGCTTAAGGAGATAGGATCTGCA-ATTCGGTC
1 TGTTTCCCTACTGCTTAGGGGGTTAAGCCCTTCATCTTTGATC
* * * * * * *
7177741 TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATT
1 TGTTTCCCTACTGCTTAGGGGGTTAAG-CCCTTCATCTTTGATC
*
7177785 TGTTTCCCTACTGCTTAGGGGATTAAG
1 TGTTTCCCTACTGCTTAGGGGGTTAAG
7177812 ATCTGTAAAT
Statistics
Matches: 323, Mismatches: 81, Indels: 26
0.75 0.19 0.06
Matches are distributed among these distances:
42 52 0.16
43 127 0.39
44 113 0.35
45 28 0.09
46 3 0.01
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (43 bp):
TGTTTCCCTACTGCTTAGGGGGTTAAGCCCTTCATCTTTGATC
Found at i:7177577 original size:261 final size:260
Alignment explanation
Indices: 7177288--7177860 Score: 952
Period size: 261 Copynumber: 2.2 Consensus size: 260
7177278 TCGAGGAGGC
* * *
7177288 AAGATCTGT-AATTTTCAACCTATTACCCTACTACCTAGGGGGTTAAGG-TCTGTAAATCTAGCT
1 AAGATCTGTAAATCTTCAGCCTGTTACCCTACT-CCTAGGGGGTTAAGGCT-TGTAAATCTAGCT
*
7177351 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATATGTTTCCCTACTGCTTAGGGG
64 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATATGTTTCCCTACTGCTTAAGGG
* *
7177416 GTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTTGGTCT
129 GTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAAGGAGATAAGATCTGCAATTCGGTCT
*
7177481 GTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGG
194 GTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGA
7177546 TT
259 TT
* * * *
7177548 AAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTCAGGGGGTTAAAGCTTGTAAATTTGGCTT
1 AAGATCTGTAAATCTTCAGCCTGTTACCCTACTCCT-AGGGGGTTAAGGCTTGTAAATCTAGCTT
*
7177613 GTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATCTGTTTCCCTACTGCTTAAGGGG
65 GTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATATGTTTCCCTACTGCTTAAGGGG
*
7177678 TTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAAGGAGATAGGATCTGCAATTCGGTCTG
130 TTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAAGGAGATAAGATCTGCAATTCGGTCTG
*
7177743 TTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATTTGTTTCCCTACTGCTTAGGGGAT
195 TTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGAT
7177808 T
260 T
* *
7177809 AAGATCTGTAAATCTTCAGCCTGCTACCCTACTGCTTAGGGGGTTAAGGCTT
1 AAGATCTGTAAATCTTCAGCCTGTTACCCTACT-CCTAGGGGGTTAAGGCTT
7177861 ATGAATTCAC
Statistics
Matches: 291, Mismatches: 18, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
260 11 0.04
261 278 0.96
262 2 0.01
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (260 bp):
AAGATCTGTAAATCTTCAGCCTGTTACCCTACTCCTAGGGGGTTAAGGCTTGTAAATCTAGCTTG
TTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATATGTTTCCCTACTGCTTAAGGGGT
TAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAAGGAGATAAGATCTGCAATTCGGTCTGT
TACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGATT
Found at i:7177800 original size:129 final size:128
Alignment explanation
Indices: 7177351--7177815 Score: 553
Period size: 129 Copynumber: 3.6 Consensus size: 128
7177341 AAATCTAGCT
* * * * *
7177351 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATATGTTTCCCTACTGCTTAGGGG
1 TGTTACCCTACCGATTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAAGGG
7177416 GTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTTGGTC
66 GTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGAGAT-AGATCTGCAATTTGGTC
* * * *
7177480 TGTTACCCTACCGATTA-GGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
1 TGTTACCCTACCGATTAGGGGGTTAAAG-CCCATCATCTTCGATCTGTTTCCCTACTGCTTAAGG
* * * * * * * * *
7177544 GGTTAAGATCTGTAAATCTTC-AGCCTGTTACCCTACTGCTCAGGGGGTTAAAGCTTGTAAATTT
65 GGTTAAGATCT-T-CATCTTCGA-TCTGTTTCCCTACTGCTTAGGGAGATAGATC-TG-CAATTT
7177608 GG-C
125 GGTC
* * *
7177611 TTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATCTGTTTCCCTACTGCTTAAGG
1 -TGTTACCCTACCGATTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAAGG
* *
7177676 GGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAAGGAGATAGGATCTGCAATTCGGTC
65 GGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGAGATA-GATCTGCAATTTGGTC
* * * *
7177741 TGTTACCCTACCGATTA-GGGGTTTAAGACCCTTCGTCTTCGATTTGTTTCCCTACTGCTT-AGG
1 TGTTACCCTACCGATTAGGGGGTTAAAG-CCCATCATCTTCGATCTGTTTCCCTACTGCTTAAGG
7177804 GGATTAAGATCT
65 GG-TTAAGATCT
7177816 GTAAATCTTC
Statistics
Matches: 282, Mismatches: 41, Indels: 26
0.81 0.12 0.07
Matches are distributed among these distances:
128 23 0.08
129 116 0.41
130 35 0.12
131 34 0.12
132 65 0.23
133 9 0.03
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (128 bp):
TGTTACCCTACCGATTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAAGGG
GTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGAGATAGATCTGCAATTTGGTC
Found at i:7178696 original size:1 final size:1
Alignment explanation
Indices: 7178685--7178718 Score: 50
Period size: 1 Copynumber: 34.0 Consensus size: 1
7178675 GGCCTCTCCC
* *
7178685 TTTTTTCTTTTTTTTTTTTTTTTTCTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
7178719 AGGCGAAGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.00, C:0.06, G:0.00, T:0.94
Consensus pattern (1 bp):
T
Found at i:7178699 original size:9 final size:9
Alignment explanation
Indices: 7178685--7178717 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
7178675 GGCCTCTCCC
7178685 TTTTTTCTT
1 TTTTTTCTT
*
7178694 TTTTTTTTT
1 TTTTTTCTT
7178703 TTTTTTCTT
1 TTTTTTCTT
7178712 TTTTTT
1 TTTTTT
7178718 TAGGCGAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.00, C:0.06, G:0.00, T:0.94
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:7194230 original size:9 final size:10
Alignment explanation
Indices: 7194219--7194268 Score: 79
Period size: 9 Copynumber: 5.3 Consensus size: 10
7194209 AATTGAAACA
7194219 AATAAATAA-
1 AATAAATAAT
7194228 AATAAATAAT
1 AATAAATAAT
7194238 AATAAATAAT
1 AATAAATAAT
7194248 AAT-AATAAT
1 AATAAATAAT
7194257 AAT-AATAAT
1 AATAAATAAT
7194266 AAT
1 AAT
7194269 CACAATGAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
9 27 0.68
10 13 0.32
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (10 bp):
AATAAATAAT
Found at i:7194240 original size:3 final size:3
Alignment explanation
Indices: 7194223--7194268 Score: 67
Period size: 3 Copynumber: 15.0 Consensus size: 3
7194213 GAAACAAATA
7194223 AAT AA- AAT AAAT AAT AAT AAAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT -AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT
7194269 CACAATGAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
2 2 0.05
3 32 0.80
4 6 0.15
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:7194243 original size:19 final size:19
Alignment explanation
Indices: 7194219--7194268 Score: 77
Period size: 19 Copynumber: 2.7 Consensus size: 19
7194209 AATTGAAACA
7194219 AATAAATAA-AATAAATAAT
1 AATAAATAATAAT-AATAAT
7194238 AATAAATAATAATAATAAT
1 AATAAATAATAATAATAAT
7194257 AAT-AATAATAAT
1 AATAAATAATAAT
7194269 CACAATGAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
18 9 0.30
19 18 0.60
20 3 0.10
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
AATAAATAATAATAATAAT
Found at i:7194937 original size:22 final size:22
Alignment explanation
Indices: 7194904--7194948 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
7194894 TATGTACAAT
*
7194904 AGGGAAAAAAAATC-GAAGAAA
1 AGGGAAAAAAAATCAAAAGAAA
*
7194925 AGGGCAAATAAAATCAAAAGAAA
1 AGGG-AAAAAAAATCAAAAGAAA
7194948 A
1 A
7194949 ATGAGGCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 4 0.20
22 9 0.45
23 7 0.35
ACGTcount: A:0.67, C:0.07, G:0.20, T:0.07
Consensus pattern (22 bp):
AGGGAAAAAAAATCAAAAGAAA
Found at i:7195569 original size:3 final size:3
Alignment explanation
Indices: 7195499--7195549 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
7195489 CCATTTTACT
* * * * *
7195499 TTA TTA TTA TTA TTA ATA TCA CTA TTA TCA TCA TTA TTA TTA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7195546 TTA T
1 TTA T
7195550 AATACCTCTT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:7201581 original size:25 final size:26
Alignment explanation
Indices: 7201455--7201614 Score: 270
Period size: 26 Copynumber: 6.2 Consensus size: 26
7201445 CATGAAATTC
* *
7201455 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
* *
7201481 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
7201507 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
7201533 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
7201559 TTATCATGGAACA-TTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
7201584 TTATCAT-GAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
7201609 TTATCA
1 TTATCA
7201615 ATTTGTATCA
Statistics
Matches: 131, Mismatches: 2, Indels: 3
0.96 0.01 0.02
Matches are distributed among these distances:
24 5 0.04
25 37 0.28
26 89 0.68
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:7207326 original size:26 final size:26
Alignment explanation
Indices: 7207290--7207450 Score: 261
Period size: 26 Copynumber: 6.2 Consensus size: 26
7207280 CATGAAATTC
*
7207290 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
7207316 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
7207342 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
7207368 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
* *
7207394 TTATTATGGAACA-TTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
7207419 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
7207445 TTATCA
1 TTATCA
7207451 ATTTGTATCA
Statistics
Matches: 129, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
25 23 0.18
26 106 0.82
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:7207480 original size:77 final size:77
Alignment explanation
Indices: 7207290--7207450 Score: 207
Period size: 77 Copynumber: 2.1 Consensus size: 77
7207280 CATGAAATTC
* ** * * * *
7207290 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
1 TTATCATGGAACATTTA-CTAACATATAATTATGGAACATTTACCTAACCCATTATCATGAAACA
7207355 TTTACCTAACCTA
65 TTTACCTAACCTA
* * *
7207368 TTATCATGGAACATTTACCTAACCTATTATTATGGAACA-TTACCTAACCTATTATCATGAAACA
1 TTATCATGGAACATTTA-CTAACATATAATTATGGAACATTTACCTAACCCATTATCATGAAACA
7207432 TTTACCTAACCTA
65 TTTACCTAACCTA
7207445 TTATCA
1 TTATCA
7207451 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
77 42 0.55
78 35 0.45
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.34
Consensus pattern (77 bp):
TTATCATGGAACATTTACTAACATATAATTATGGAACATTTACCTAACCCATTATCATGAAACAT
TTACCTAACCTA
Found at i:7213971 original size:2 final size:2
Alignment explanation
Indices: 7213964--7214004 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
7213954 ACTTGGCCAC
7213964 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7214005 CCGATTACCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7217384 original size:19 final size:19
Alignment explanation
Indices: 7217346--7217381 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7217336 TATGTGATTG
7217346 AATTTTACTATAAATTTTC
1 AATTTTACTATAAATTTTC
*
7217365 AATTTTATTA-AAATTTT
1 AATTTTACTATAAATTTT
7217382 TCACCAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (19 bp):
AATTTTACTATAAATTTTC
Found at i:7217511 original size:23 final size:23
Alignment explanation
Indices: 7217485--7217559 Score: 59
Period size: 23 Copynumber: 3.4 Consensus size: 23
7217475 AATTCTTTCA
*
7217485 AATATTTTATTTTAATAGTTAAC
1 AATAATTTATTTTAATAGTTAAC
* ** *
7217508 AATAATTTA---AAATTCTT-TC
1 AATAATTTATTTTAATAGTTAAC
*
7217527 AAATATTTTATTTTAATAGTTAAC
1 -AATAATTTATTTTAATAGTTAAC
7217551 AATAATTTA
1 AATAATTTA
7217560 ACTTATAAAT
Statistics
Matches: 36, Mismatches: 11, Indels: 10
0.63 0.19 0.18
Matches are distributed among these distances:
19 1 0.03
20 13 0.36
23 21 0.58
24 1 0.03
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.49
Consensus pattern (23 bp):
AATAATTTATTTTAATAGTTAAC
Found at i:7217520 original size:43 final size:43
Alignment explanation
Indices: 7217473--7217560 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
7217463 TATAATAAGA
7217473 AAAATTCTTTCAAATATTTTATTTTAATAGTTAACAATAATTT
1 AAAATTCTTTCAAATATTTTATTTTAATAGTTAACAATAATTT
7217516 AAAATTCTTTCAAATATTTTATTTTAATAGTTAACAATAATTT
1 AAAATTCTTTCAAATATTTTATTTTAATAGTTAACAATAATTT
7217559 AA
1 AA
7217561 CTTATAAATA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (43 bp):
AAAATTCTTTCAAATATTTTATTTTAATAGTTAACAATAATTT
Found at i:7217558 original size:24 final size:24
Alignment explanation
Indices: 7217488--7217558 Score: 62
Period size: 24 Copynumber: 3.2 Consensus size: 24
7217478 TCTTTCAAAT
7217488 ATTTTATTTTAATAGTTAACAATA
1 ATTTTATTTTAATAGTTAACAATA
* ** * *
7217512 ATTTAAAATT-CT--TTCA-AAT-
1 ATTTTATTTTAATAGTTAACAATA
7217531 ATTTTATTTTAATAGTTAACAATA
1 ATTTTATTTTAATAGTTAACAATA
7217555 ATTT
1 ATTT
7217559 AACTTATAAA
Statistics
Matches: 32, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
19 7 0.22
20 4 0.12
21 3 0.09
22 3 0.09
23 4 0.12
24 11 0.34
ACGTcount: A:0.41, C:0.06, G:0.03, T:0.51
Consensus pattern (24 bp):
ATTTTATTTTAATAGTTAACAATA
Found at i:7219763 original size:106 final size:105
Alignment explanation
Indices: 7219621--7219839 Score: 273
Period size: 106 Copynumber: 2.1 Consensus size: 105
7219611 ACAAGATATC
* * * * *
7219621 AATACTAAACAATATAAACTACATGCTTTAACATTTCATGC-AACTATAATATAGAAAATGATG-
1 AATA-TAAACAATATAAAATACATGCATTAACATTTCATGCAAAATATAACATAGAAAATAATGA
* *
7219684 A-ATAACAACATAAATTATATAATATACATTAACCTTTCATGCA
65 ATATAACAACATAAATTACAT-ATATA-A-TAACATTTCATGCA
* * *
7219727 GATATAAATAATATAAATATACATGCATTAATATTTCATGCAAAATATAACATAGAAAATAATGA
1 AATATAAACAATATAAA-ATACATGCATTAACATTTCATGCAAAATATAACATAGAAAATAATGA
*
7219792 ATATAACAACATAAATTACATATATAATAATATTTCATGCA
65 ATATAACAACATAAATTACATATATAATAACATTTCATGCA
7219833 AATATAA
1 AATATAA
7219840 CTTCAATCAA
Statistics
Matches: 97, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
105 12 0.12
106 41 0.42
107 20 0.21
108 6 0.06
109 18 0.19
ACGTcount: A:0.51, C:0.12, G:0.05, T:0.32
Consensus pattern (105 bp):
AATATAAACAATATAAAATACATGCATTAACATTTCATGCAAAATATAACATAGAAAATAATGAA
TATAACAACATAAATTACATATATAATAACATTTCATGCA
Found at i:7219901 original size:18 final size:18
Alignment explanation
Indices: 7219878--7219912 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7219868 ATGCGAATAT
*
7219878 ATAAAAACAATAAATAAC
1 ATAAAAACAACAAATAAC
*
7219896 ATAAAAATAACAAATAA
1 ATAAAAACAACAAATAA
7219913 TTTATGAGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.74, C:0.09, G:0.00, T:0.17
Consensus pattern (18 bp):
ATAAAAACAACAAATAAC
Found at i:7220045 original size:12 final size:12
Alignment explanation
Indices: 7220036--7220061 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7220026 AAATAATATA
7220036 ATTTAAAATAAT
1 ATTTAAAATAAT
7220048 ATTTAAAATAAT
1 ATTTAAAATAAT
7220060 AT
1 AT
7220062 AAAAATGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
ATTTAAAATAAT
Found at i:7220112 original size:20 final size:20
Alignment explanation
Indices: 7220087--7220141 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
7220077 GAATTTTTTT
7220087 TAAAACGATTAATATAT-ATA
1 TAAAAC-ATTAATATATGATA
*
7220107 TAAAACA-TACTATATGATA
1 TAAAACATTAATATATGATA
7220126 TAATAAC-TTAATATAT
1 TAA-AACATTAATATAT
7220142 TTAAAAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
18 7 0.23
19 7 0.23
20 16 0.53
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.36
Consensus pattern (20 bp):
TAAAACATTAATATATGATA
Found at i:7220348 original size:19 final size:19
Alignment explanation
Indices: 7220324--7220411 Score: 71
Period size: 17 Copynumber: 4.7 Consensus size: 19
7220314 AATATAGGGA
7220324 ATAATATATATAATAAAAT
1 ATAATATATATAATAAAAT
7220343 AT-A-ATATATAATAAAAT
1 ATAATATATATAATAAAAT
*
7220360 AT-ATA-ATAAAATACAAAT
1 ATAATATATATAATA-AAAT
* *
7220378 A-ACCTGATAAATAATAAAA-
1 ATA-AT-ATATATAATAAAAT
7220397 ATAATATATAATAAT
1 ATAATATAT-ATAAT
7220412 TTTTACGTGT
Statistics
Matches: 55, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
17 24 0.44
18 10 0.18
19 10 0.18
20 5 0.09
21 6 0.11
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (19 bp):
ATAATATATATAATAAAAT
Found at i:7220365 original size:12 final size:12
Alignment explanation
Indices: 7220340--7220372 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
7220330 TATATAATAA
*
7220340 AATATAATATAT
1 AATAAAATATAT
7220352 AATAAAATATAT
1 AATAAAATATAT
7220364 AATAAAATA
1 AATAAAATA
7220373 CAAATAACCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AATAAAATATAT
Found at i:7222777 original size:8 final size:8
Alignment explanation
Indices: 7222766--7222791 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
7222756 AGTAAATGAG
7222766 TATTATTT
1 TATTATTT
7222774 TATTATTT
1 TATTATTT
7222782 TATTATTT
1 TATTATTT
7222790 TA
1 TA
7222792 ATTTGATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (8 bp):
TATTATTT
Found at i:7223084 original size:21 final size:21
Alignment explanation
Indices: 7223060--7223100 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7223050 CTTTGGCCCC
7223060 TTAA-AATTATAAAAATATAAT
1 TTAATAATT-TAAAAATATAAT
*
7223081 TTAATCATTTAAAAATATAA
1 TTAATAATTTAAAAATATAA
7223101 AGATATAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (21 bp):
TTAATAATTTAAAAATATAAT
Found at i:7224016 original size:19 final size:19
Alignment explanation
Indices: 7223994--7224037 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
7223984 TTTTTTTTGC
*
7223994 TTTTTTTTAACTTTTGTCT
1 TTTTTTTTAAATTTTGTCT
* *
7224013 TTTTCTTTAAATTTTTTCT
1 TTTTTTTTAAATTTTGTCT
7224032 TTTTTT
1 TTTTTT
7224038 AAGTTTTATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.11, C:0.09, G:0.02, T:0.77
Consensus pattern (19 bp):
TTTTTTTTAAATTTTGTCT
Found at i:7224185 original size:36 final size:34
Alignment explanation
Indices: 7224117--7224373 Score: 190
Period size: 36 Copynumber: 7.3 Consensus size: 34
7224107 ATTTGAAATG
* *
7224117 TTTTATAATATATTTTTTTAAA--ATTTTT-TAAA
1 TTTTA-AATATATATTTTGAAATTATTTTTATAAA
7224149 TTTTAAATATATACTTTTGAAATTATTTCTTATAAA
1 TTTTAAATATATA-TTTTGAAATTATTT-TTATAAA
* *
7224185 TTTTAAAAATATATATTTGAAATTAATTTTTCTAAA
1 TTTTAAATATATAT-TTTGAAATT-ATTTTTATAAA
* *
7224221 TTTTAAATTTTAAATATATTTTAAAAAATATTTTTA-AACA
1 TTTTAAA---T--ATATATTTT-GAAATTATTTTTATAA-A
*** *
7224261 AAATAAA-ATA-A-TTTCAAATATATATTTT-TAAA
1 TTTTAAATATATATTTTGAAAT-TAT-TTTTATAAA
7224293 TTTTAAATATATATTTTTGAAATTATTTCTTATAAA
1 TTTTAAATATATA-TTTTGAAATTATTT-TTATAAA
*
7224329 TTTTAAAAATATATTTTTGAAATTATTTTT-TAAAA
1 TTTTAAATATATA-TTTTGAAATTATTTTTAT-AAA
7224364 TTTTAAATAT
1 TTTTAAATAT
7224374 CATTTTTAAA
Statistics
Matches: 182, Mismatches: 19, Indels: 45
0.74 0.08 0.18
Matches are distributed among these distances:
31 10 0.05
32 23 0.13
33 10 0.05
34 11 0.06
35 22 0.12
36 76 0.42
37 4 0.02
39 2 0.01
40 14 0.08
41 10 0.05
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (34 bp):
TTTTAAATATATATTTTGAAATTATTTTTATAAA
Found at i:7224294 original size:21 final size:22
Alignment explanation
Indices: 7224270--7224316 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
7224260 AAAATAAAAT
7224270 AATTTCAAATATATATTTTT-A
1 AATTTCAAATATATATTTTTGA
*
7224291 AATTTTAAATATATATTTTTGA
1 AATTTCAAATATATATTTTTGA
7224313 AATT
1 AATT
7224317 ATTTCTTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 19 0.79
22 5 0.21
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (22 bp):
AATTTCAAATATATATTTTTGA
Found at i:7224379 original size:20 final size:20
Alignment explanation
Indices: 7224356--7224431 Score: 63
Period size: 20 Copynumber: 3.9 Consensus size: 20
7224346 TGAAATTATT
7224356 TTTTAAAATTTTAAATATCA
1 TTTTAAAATTTTAAATATCA
* *
7224376 TTTTTAAATATTAAATAT-A
1 TTTTAAAATTTTAAATATCA
7224395 TTTTTAATAATATTT-AA-A-CA
1 -TTTTAA-AAT-TTTAAATATCA
7224415 -TTTAAAATTTTTAAATA
1 TTTTAAAA-TTTTAAATA
7224432 ATTTTTTTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 15
0.70 0.06 0.23
Matches are distributed among these distances:
17 5 0.11
18 8 0.18
19 2 0.04
20 23 0.51
21 5 0.11
22 2 0.04
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (20 bp):
TTTTAAAATTTTAAATATCA
Found at i:7224379 original size:21 final size:20
Alignment explanation
Indices: 7224355--7224412 Score: 73
Period size: 20 Copynumber: 2.8 Consensus size: 20
7224345 TTGAAATTAT
7224355 TTTTTAAAATTTTAAATATCA
1 TTTTTAAAATTTTAAATAT-A
*
7224376 TTTTT-AAATATTAAATATA
1 TTTTTAAAATTTTAAATATA
7224395 TTTTTAATAATATTTAAA
1 TTTTTAA-AAT-TTTAAA
7224413 CATTTAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 6 0.19
20 13 0.41
21 8 0.25
22 5 0.16
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTTTAAAATTTTAAATATA
Found at i:7224647 original size:12 final size:12
Alignment explanation
Indices: 7224598--7224647 Score: 55
Period size: 12 Copynumber: 4.0 Consensus size: 12
7224588 GACACTCTGC
7224598 TTTTAATATTTGTT
1 TTTTAAT-TTT-TT
*
7224612 TTTTAATTTGTT
1 TTTTAATTTTTT
* *
7224624 TTTTACTATTTT
1 TTTTAATTTTTT
7224636 TTTTAATTTTTT
1 TTTTAATTTTTT
7224648 CATTTCTCTG
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
12 21 0.70
13 2 0.07
14 7 0.23
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.76
Consensus pattern (12 bp):
TTTTAATTTTTT
Found at i:7224680 original size:11 final size:11
Alignment explanation
Indices: 7224666--7224730 Score: 66
Period size: 11 Copynumber: 6.2 Consensus size: 11
7224656 TGACATTTGT
7224666 TTTTATTTTTA
1 TTTTATTTTTA
* *
7224677 TTTTGTCTTTA
1 TTTTATTTTTA
7224688 TCTTTA--TTTA
1 T-TTTATTTTTA
7224698 -TTTATTTTTA
1 TTTTATTTTTA
7224708 TTTTA-TTTTA
1 TTTTATTTTTA
*
7224718 TTTTAGTTTTA
1 TTTTATTTTTA
7224729 TT
1 TT
7224731 AATTTTAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
8 4 0.09
10 18 0.39
11 21 0.46
12 3 0.07
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.77
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:7224705 original size:31 final size:30
Alignment explanation
Indices: 7224667--7224736 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 30
7224657 GACATTTGTT
*
7224667 TTTATTTTTATTTTGTCTTTATCTTTA-TTTA
1 TTTATTTTTATTTTAT-TTTAT-TTTAGTTTA
7224698 TTTATTTTTATTTTATTTTATTTTAGTTTTA
1 TTTATTTTTATTTTATTTTATTTTAG-TTTA
*
7224729 TTAATTTT
1 TTTATTTT
7224737 AAAAAACTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 4 0.11
30 5 0.14
31 26 0.74
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.76
Consensus pattern (30 bp):
TTTATTTTTATTTTATTTTATTTTAGTTTA
Found at i:7224737 original size:15 final size:15
Alignment explanation
Indices: 7224667--7224737 Score: 56
Period size: 15 Copynumber: 4.7 Consensus size: 15
7224657 GACATTTGTT
* *
7224667 TTTATTTTTATTTTG
1 TTTAATTTTATTTTA
*
7224682 TCTTTATCTTTA-TTTA
1 T-TTAAT-TTTATTTTA
*
7224698 TTTATTTTTATTTTA
1 TTTAATTTTATTTTA
*
7224713 TTTTATTTTAGTTTTA
1 TTTAATTTTA-TTTTA
7224729 -TTAATTTTA
1 TTTAATTTTA
7224738 AAAAACTTGA
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
14 4 0.09
15 24 0.55
16 12 0.27
17 4 0.09
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.75
Consensus pattern (15 bp):
TTTAATTTTATTTTA
Found at i:7224738 original size:6 final size:5
Alignment explanation
Indices: 7224666--7224730 Score: 62
Period size: 6 Copynumber: 12.4 Consensus size: 5
7224656 TGACATTTGT
*
7224666 TTTTA TTTTTA TTTTG TCTTTA TCTTTA -TTTA -TTTA TTTTTA TTTTA
1 TTTTA -TTTTA TTTTA T-TTTA T-TTTA TTTTA TTTTA -TTTTA TTTTA
7224713 TTTTA TTTTA GTTTTA TT
1 TTTTA TTTTA -TTTTA TT
7224731 AATTTTAAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
4 8 0.15
5 22 0.42
6 23 0.43
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:7224815 original size:24 final size:25
Alignment explanation
Indices: 7224756--7224815 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 25
7224746 GAAATGTATA
7224756 TTTGAAATGT-TTTATAATATATATT
1 TTTGAAAT-TATTTATAATATATATT
*
7224781 TTTTAAA--ATTTA-AATATATATT
1 TTTGAAATTATTTATAATATATATT
7224803 TTTGAAATTATTT
1 TTTGAAATTATTT
7224816 TTCTAAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
22 16 0.53
23 4 0.13
24 4 0.13
25 6 0.20
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (25 bp):
TTTGAAATTATTTATAATATATATT
Found at i:7224839 original size:13 final size:12
Alignment explanation
Indices: 7224823--7224880 Score: 52
Period size: 12 Copynumber: 4.9 Consensus size: 12
7224813 TTTTTCTAAA
7224823 TTTTAAATATTAT
1 TTTTAAA-ATTAT
7224836 TTTT-AAATTATT
1 TTTTAAAATTA-T
7224848 TTTTAAAA--A-
1 TTTTAAAATTAT
*
7224857 TTTAAAAATTAT
1 TTTTAAAATTAT
7224869 TTTTAAATATTA
1 TTTTAAA-ATTA
7224881 AATATATATT
Statistics
Matches: 37, Mismatches: 2, Indels: 12
0.73 0.04 0.24
Matches are distributed among these distances:
9 7 0.19
11 6 0.16
12 13 0.35
13 11 0.30
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
TTTTAAAATTAT
Found at i:7224844 original size:33 final size:32
Alignment explanation
Indices: 7224777--7224876 Score: 146
Period size: 33 Copynumber: 3.0 Consensus size: 32
7224767 TTATAATATA
7224777 TATTTTTTAAAATTTAAATATATATTTTTGAAAT
1 TATTTTTTAAAATTTAAATAT-TATTTTT-AAAT
*
7224811 TATTTTTCTAAATTTTAAATATTATTTTTAAAT
1 TATTTTT-TAAAATTTAAATATTATTTTTAAAT
*
7224844 TATTTTTTAAAAATTTAAAAATTATTTTTAAAT
1 TATTTTTT-AAAATTTAAATATTATTTTTAAAT
7224877 ATTAAATATA
Statistics
Matches: 61, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
32 1 0.02
33 33 0.54
34 14 0.23
35 13 0.21
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (32 bp):
TATTTTTTAAAATTTAAATATTATTTTTAAAT
Found at i:7224890 original size:21 final size:22
Alignment explanation
Indices: 7224766--7224891 Score: 68
Period size: 21 Copynumber: 5.7 Consensus size: 22
7224756 TTTGAAATGT
*
7224766 TTTATAATATATATTTTTTAAAA
1 TTTA-AATATATATTTTTAAAAA
*
7224789 TTTAAATATATATTTTTGAAATTA
1 TTTAAATATATATTTTT-AAA-AA
* * *
7224813 TTT--TTCTA-AATTTTAAATATTA
1 TTTAAATATATATTTTTAAA-A--A
7224835 TTTTTAAAT-TAT-TTTTTAAAAA
1 --TTTAAATATATATTTTTAAAAA
* *
7224857 TTTAAAAAT-TATTTTTAAATA
1 TTTAAATATATATTTTTAAAAA
7224878 -TTAAATATATATTT
1 TTTAAATATATATTT
7224892 AATAATATAA
Statistics
Matches: 80, Mismatches: 11, Indels: 26
0.68 0.09 0.22
Matches are distributed among these distances:
20 18 0.22
21 20 0.25
22 18 0.22
23 6 0.08
24 8 0.10
25 9 0.11
26 1 0.01
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (22 bp):
TTTAAATATATATTTTTAAAAA
Found at i:7225006 original size:23 final size:25
Alignment explanation
Indices: 7224979--7225060 Score: 107
Period size: 25 Copynumber: 3.3 Consensus size: 25
7224969 ATTTTAATTT
*
7224979 TTTTTATAATT-TTTTTAATTA-TGA
1 TTTTTA-AATTATTTTAAATTATTGA
7225003 TTTTTAAATTATTTTAAATTATTGA
1 TTTTTAAATTATTTTAAATTATTGA
*
7225028 TTTTTAAATTATTTAAAATATATT-A
1 TTTTTAAATTATTTTAAAT-TATTGA
7225053 TTTTTAAA
1 TTTTTAAA
7225061 GATATGAACT
Statistics
Matches: 53, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
23 4 0.08
24 15 0.28
25 30 0.57
26 4 0.08
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (25 bp):
TTTTTAAATTATTTTAAATTATTGA
Found at i:7225017 original size:25 final size:25
Alignment explanation
Indices: 7224957--7225041 Score: 83
Period size: 24 Copynumber: 3.5 Consensus size: 25
7224947 GTTTATAATA
*
7224957 TTTTAAATGTATATTTTAATT-T--T
1 TTTTAAAT-TATTTTTTAATTATGAT
7224980 TTTTATAA-T-TTTTTTAATTATGAT
1 TTTTA-AATTATTTTTTAATTATGAT
*
7225004 TTTTAAATTA-TTTTAAATTATTGAT
1 TTTTAAATTATTTTTTAATTA-TGAT
7225029 TTTTAAATTATTT
1 TTTTAAATTATTT
7225042 AAAATATATT
Statistics
Matches: 52, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
21 9 0.17
22 2 0.04
23 7 0.13
24 18 0.35
25 14 0.27
26 2 0.04
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.65
Consensus pattern (25 bp):
TTTTAAATTATTTTTTAATTATGAT
Found at i:7225133 original size:31 final size:31
Alignment explanation
Indices: 7225086--7225178 Score: 97
Period size: 28 Copynumber: 3.1 Consensus size: 31
7225076 ATTTATTATT
*
7225086 TATTTTATAATATTTTAAATATATATTTTAAA
1 TATTTTATAAAATTTTAAATATA-ATTTTAAA
*
7225118 TATTTT-TAAAATTTTAAATATAATTTT-TA
1 TATTTTATAAAATTTTAAATATAATTTTAAA
* *
7225147 TA-ATTAT-TAATTTTAAA-ATTAATTTTAAA
1 TATTTTATAAAATTTTAAATA-TAATTTTAAA
7225176 TAT
1 TAT
7225179 ATTCAAACGT
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
27 1 0.02
28 18 0.35
29 7 0.13
30 5 0.10
31 15 0.29
32 6 0.12
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (31 bp):
TATTTTATAAAATTTTAAATATAATTTTAAA
Found at i:7225144 original size:12 final size:12
Alignment explanation
Indices: 7225097--7225179 Score: 63
Period size: 13 Copynumber: 7.0 Consensus size: 12
7225087 ATTTTATAAT
7225097 ATTTTAAATATA
1 ATTTTAAATATA
7225109 TATTTTAAATAT-
1 -ATTTTAAATATA
7225121 -TTTT--A-A-A
1 ATTTTAAATATA
7225128 ATTTTAAATATA
1 ATTTTAAATATA
7225140 ATTTTTATAATTATTA
1 A-TTTTA-AA-TA-TA
7225156 ATTTTAAA-ATTA
1 ATTTTAAATA-TA
7225168 ATTTTAAATATA
1 ATTTTAAATATA
7225180 TTCAAACGTT
Statistics
Matches: 59, Mismatches: 0, Indels: 23
0.72 0.00 0.28
Matches are distributed among these distances:
7 1 0.02
8 5 0.08
10 5 0.08
11 1 0.02
12 16 0.27
13 17 0.29
14 4 0.07
15 7 0.12
16 3 0.05
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (12 bp):
ATTTTAAATATA
Found at i:7225172 original size:141 final size:138
Alignment explanation
Indices: 7224822--7225181 Score: 352
Period size: 141 Copynumber: 2.6 Consensus size: 138
7224812 ATTTTTCTAA
* * * *
7224822 ATTTTAAATAT-TATTTTTAAATTATTTTT-TAAAAATTTAAAAATTATTTTTAAA-TA--TTAA
1 ATTTTAAATATATA-TTTTAAA-TATTTTTATAATATTTTAAATATAATTTTTAAATTATTTTAA
* * *
7224882 ATA-T-ATATTT-AATA-ATATAAAACAT-TTAAATATTTTAAAGATATGACCTTTCAAATTTAT
64 ATATTAAT-TTTAAATATATTTAAAATATATT--AT-TTTTAAAGATATGAACTTTCAAATTTAT
7224942 TATTAGTTTATAAT
125 TATTAGTTTATAAT
* * * * * *
7224956 ATTTTAAATGTATATTTTAATTTTTTTTATAATTTTTTTAATTATGATTTTTAAATTATTTTAAA
1 ATTTTAAATATATATTTTAAATATTTTTATAA-TATTTTAAATATAATTTTTAAATTATTTTAAA
*
7225021 TTATTGATTTTTAAAT-TATTTAAAATATATTATTTTTAAAGATATGAACTTTCAAATTTATTAT
65 -TATT-AATTTTAAATATATTTAAAATATATTATTTTTAAAGATATGAACTTTCAAATTTATTA-
*
7225085 TTATTTTATAAT
127 TTAGTTTATAAT
7225097 ATTTTAAATATATATTTTAAATATTTTTA-AA-ATTTTAAATATAATTTTTATAATTATTAATTT
1 ATTTTAAATATATATTTTAAATATTTTTATAATATTTTAAATATAA-TTTT-TAA--ATT-ATTT
7225160 TAAA-ATTAATTTTAAATATATT
61 TAAATATTAATTTTAAATATATT
7225182 CAAACGTTTT
Statistics
Matches: 185, Mismatches: 21, Indels: 33
0.77 0.09 0.14
Matches are distributed among these distances:
133 6 0.03
134 19 0.10
135 18 0.10
136 2 0.01
138 15 0.08
139 6 0.03
140 44 0.24
141 49 0.26
142 16 0.09
143 10 0.05
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (138 bp):
ATTTTAAATATATATTTTAAATATTTTTATAATATTTTAAATATAATTTTTAAATTATTTTAAAT
ATTAATTTTAAATATATTTAAAATATATTATTTTTAAAGATATGAACTTTCAAATTTATTATTAG
TTTATAAT
Found at i:7227347 original size:64 final size:64
Alignment explanation
Indices: 7227274--7227482 Score: 156
Period size: 64 Copynumber: 3.2 Consensus size: 64
7227264 CTGGGCCAGA
*
7227274 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * **** * ** *
7227338 GCCCATTTCAAAATAC-ATGCAACATCATAACATATGCAAGCCC--ATTTGGGTAACAGTGGTAC
1 GCCCATTTCAGATTACAAT-AAAC-T-GGGCCTTA-GC---CCCTTATTCAGATAACA---GTA-
* *
7227400 TGGGCCAGA-
55 TGGCCCATAG
*
7227409 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
7227473 GCCCATTTCA
1 GCCCATTTCA
7227483 AAATACATGC
Statistics
Matches: 101, Mismatches: 29, Indels: 30
0.63 0.18 0.19
Matches are distributed among these distances:
63 9 0.09
64 28 0.28
65 4 0.04
66 3 0.03
67 11 0.11
68 11 0.11
69 3 0.03
70 4 0.04
71 19 0.19
72 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:7227482 original size:135 final size:137
Alignment explanation
Indices: 7227240--7227524 Score: 538
Period size: 135 Copynumber: 2.1 Consensus size: 137
7227230 TATTGGGCCT
**
7227240 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
7227305 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCA-T-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
7227368 CATATGC
131 CATATGC
7227375 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
7227440 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
7227505 CATATGC
131 CATATGC
7227512 AAGCCCATTTGGG
1 AAGCCCATTTGGG
7227525 GAGACTACTC
Statistics
Matches: 146, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
135 123 0.84
136 1 0.01
137 22 0.15
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:7229372 original size:26 final size:25
Alignment explanation
Indices: 7229295--7229403 Score: 157
Period size: 26 Copynumber: 4.2 Consensus size: 25
7229285 ACATGAATTC
*
7229295 TTATCATGAAACATTTACCTAAACCA
1 TTATCATGGAACATTTACCT-AACCA
7229321 TTATCAT-GAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAA-CCA
*
7229346 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGGAACATTTACCTAA-CCA
7229372 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACC-A
7229398 TTATCA
1 TTATCA
7229404 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
24 2 0.03
25 23 0.30
26 51 0.67
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.35
Consensus pattern (25 bp):
TTATCATGGAACATTTACCTAACCA
Found at i:7229373 original size:51 final size:52
Alignment explanation
Indices: 7229295--7229403 Score: 175
Period size: 51 Copynumber: 2.1 Consensus size: 52
7229285 ACATGAATTC
7229295 TTATCATGAAACATTTACCTAAACCATTATCAT-GAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCA
* * * *
7229346 TTATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCA
7229398 TTATCA
1 TTATCA
7229404 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
51 30 0.57
52 23 0.43
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.35
Consensus pattern (52 bp):
TTATCATGAAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCA
Found at i:7230441 original size:17 final size:17
Alignment explanation
Indices: 7230419--7230480 Score: 63
Period size: 17 Copynumber: 3.6 Consensus size: 17
7230409 CAACATTTTC
7230419 TTTTAACATATTTAAAA
1 TTTTAACATATTTAAAA
*
7230436 TTTTAATATATTTAAATA
1 TTTTAACATATTTAAA-A
* * * *
7230454 TTTTTACGTTTTTTAAA
1 TTTTAACATATTTAAAA
7230471 TTTTAA-ATAT
1 TTTTAACATAT
7230481 ATTAGAAAAT
Statistics
Matches: 35, Mismatches: 9, Indels: 3
0.74 0.19 0.06
Matches are distributed among these distances:
16 2 0.06
17 21 0.60
18 12 0.34
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (17 bp):
TTTTAACATATTTAAAA
Found at i:7230643 original size:69 final size:70
Alignment explanation
Indices: 7230555--7230695 Score: 203
Period size: 69 Copynumber: 2.0 Consensus size: 70
7230545 ATATTTTTAA
* * * * * ** *
7230555 AAAATATATTGAATATATTATAATTTTAATATTGGTTATACTTAACATTTTTAATATATTTAATT
1 AAAATATAGTAAACATATTAAAATTTTAAAATTGGCCATACATAACATTTTTAATATATTTAATT
7230620 T-TTT
66 TCTTT
7230624 AAAATATAGTAAACATATTAAAATTTTAAAATTGGCCATACATAACATTTTTAATATATTTAATT
1 AAAATATAGTAAACATATTAAAATTTTAAAATTGGCCATACATAACATTTTTAATATATTTAATT
7230689 TCTTT
66 TCTTT
7230694 AA
1 AA
7230696 GTTTTTAAAC
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
69 58 0.92
70 5 0.08
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.48
Consensus pattern (70 bp):
AAAATATAGTAAACATATTAAAATTTTAAAATTGGCCATACATAACATTTTTAATATATTTAATT
TCTTT
Found at i:7230811 original size:40 final size:40
Alignment explanation
Indices: 7230758--7230841 Score: 134
Period size: 40 Copynumber: 2.1 Consensus size: 40
7230748 AAAAATATAT
*
7230758 ATTAAGTACATAAATTTATGAATGTGTACTAAAATTAAAAA
1 ATTAAGTACATAAATTTATAAATGTGTAC-AAAATTAAAAA
*
7230799 ATTAA-TATATAAATTTATAAATGTGTACAAAATTAAAAA
1 ATTAAGTACATAAATTTATAAATGTGTACAAAATTAAAAA
7230838 ATTA
1 ATTA
7230842 TAACCAACAC
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
39 15 0.37
40 21 0.51
41 5 0.12
ACGTcount: A:0.54, C:0.04, G:0.07, T:0.36
Consensus pattern (40 bp):
ATTAAGTACATAAATTTATAAATGTGTACAAAATTAAAAA
Found at i:7231808 original size:21 final size:23
Alignment explanation
Indices: 7231757--7231809 Score: 69
Period size: 21 Copynumber: 2.4 Consensus size: 23
7231747 AAAATATTTA
7231757 AATATTTT-ATATTATTAAAAAT
1 AATATTTTAATATTATTAAAAAT
7231779 -ATATATTTAATA-T-TTAAAAAT
1 AATAT-TTTAATATTATTAAAAAT
7231800 AATATTTTAA
1 AATATTTTAA
7231810 AAAATAAGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
21 17 0.61
22 8 0.29
23 3 0.11
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
AATATTTTAATATTATTAAAAAT
Found at i:7231814 original size:15 final size:13
Alignment explanation
Indices: 7231786--7231858 Score: 50
Period size: 13 Copynumber: 5.9 Consensus size: 13
7231776 AATATATATT
7231786 TAATATTTAAAAA
1 TAATATTTAAAAA
7231799 TAATATTTTAAAAAA
1 TAATA-TTT-AAAAA
* *
7231814 TAAGA-TTCAAAA
1 TAATATTTAAAAA
*
7231826 T--T-TTAAAAAA
1 TAATATTTAAAAA
7231836 T-A-ATTTAAAAA
1 TAATATTTAAAAA
*
7231847 TAAGATTTAAAA
1 TAATATTTAAAA
7231859 TTTAAAAATA
Statistics
Matches: 47, Mismatches: 6, Indels: 14
0.70 0.09 0.21
Matches are distributed among these distances:
10 6 0.13
11 8 0.17
12 6 0.13
13 15 0.32
14 3 0.06
15 9 0.19
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.36
Consensus pattern (13 bp):
TAATATTTAAAAA
Found at i:7231846 original size:21 final size:22
Alignment explanation
Indices: 7231803--7231847 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
7231793 TAAAAATAAT
*
7231803 ATTTTAAAAAATAAGATTCAAA
1 ATTTTAAAAAATAAGATTAAAA
*
7231825 ATTTTAAAAAATAA-TTTAAAA
1 ATTTTAAAAAATAAGATTAAAA
7231846 AT
1 AT
7231848 AAGATTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (22 bp):
ATTTTAAAAAATAAGATTAAAA
Found at i:7231928 original size:13 final size:14
Alignment explanation
Indices: 7231898--7231948 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
7231888 CAAATTTTTT
*
7231898 AAAATTAATAACAA
1 AAAATAAATAACAA
*
7231912 AAAATAAATAA-AC
1 AAAATAAATAACAA
*
7231925 AAAATAAAATAAGAA
1 AAAAT-AAATAACAA
7231940 AAATATAAA
1 AAA-ATAAA
7231949 ACTTAAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
13 6 0.19
14 16 0.52
15 7 0.23
16 2 0.06
ACGTcount: A:0.76, C:0.04, G:0.02, T:0.18
Consensus pattern (14 bp):
AAAATAAATAACAA
Found at i:7233804 original size:44 final size:44
Alignment explanation
Indices: 7233754--7233839 Score: 154
Period size: 44 Copynumber: 2.0 Consensus size: 44
7233744 TCTTCCTTAG
*
7233754 TGTTTTTCTCTTTTCTTCATTATTGTACCCAATTTTTACCATAT
1 TGTTTTTCTCTTTCCTTCATTATTGTACCCAATTTTTACCATAT
*
7233798 TGTTTTTCTCTTTCCTTCATTATTGTAGCCAATTTTTACCAT
1 TGTTTTTCTCTTTCCTTCATTATTGTACCCAATTTTTACCAT
7233840 GTGAGGATTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.17, C:0.21, G:0.06, T:0.56
Consensus pattern (44 bp):
TGTTTTTCTCTTTCCTTCATTATTGTACCCAATTTTTACCATAT
Found at i:7234475 original size:2 final size:2
Alignment explanation
Indices: 7234468--7234497 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
7234458 AACTAGTCCC
7234468 TA TA TA TA TA TA TA TA T- TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7234498 TTAAAGAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:7244880 original size:13 final size:13
Alignment explanation
Indices: 7244862--7244886 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7244852 TATTGGTGCA
7244862 CACGACCGTGTCG
1 CACGACCGTGTCG
7244875 CACGACCGTGTC
1 CACGACCGTGTC
7244887 TAGCTTCGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.40, G:0.28, T:0.16
Consensus pattern (13 bp):
CACGACCGTGTCG
Found at i:7251001 original size:29 final size:29
Alignment explanation
Indices: 7250960--7251016 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
7250950 GCGTTTTACA
7250960 AAAAAAGCCGCTAAAAACAGAGCAATAGC
1 AAAAAAGCCGCTAAAAACAGAGCAATAGC
*
7250989 AAAAACGCCGCTAAAAACAGAGCAATAG
1 AAAAAAGCCGCTAAAAACAGAGCAATAG
7251017 TGGCGTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.54, C:0.21, G:0.18, T:0.07
Consensus pattern (29 bp):
AAAAAAGCCGCTAAAAACAGAGCAATAGC
Found at i:7251065 original size:41 final size:41
Alignment explanation
Indices: 7250990--7251249 Score: 346
Period size: 41 Copynumber: 6.4 Consensus size: 41
7250980 AGCAATAGCA
* * * *
7250990 AAAACGCCGCTAAAAA-CAGAGCAATAGTGGCGTTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGAT
* * * *
7251030 AAAACGCCGCTAAAAATCGGAGCATTAACGGCGTTTTTGAT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGAT
*
7251071 AAAACGCCGCTAAAAACCGGAGCATTAGCGGCGCTTTTGAT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGAT
* *
7251112 AAAACGCCGCTAAAAACCGGAGCATTAGCGGCGCTTTCGAT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGAT
* *
7251153 AAAACGCCGCTAAAAACCATAGCATTAGCGGCGCTTTCCG-T
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTT-TGAT
* *
7251194 AAAACGACGCTAAAAACCAAAGCATTAGCGGCGCTTTCTG-T
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTT-TGAT
7251235 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
7251250 GTCATATAAC
Statistics
Matches: 203, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
40 16 0.08
41 185 0.91
42 2 0.01
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.20
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGAT
Found at i:7251652 original size:21 final size:22
Alignment explanation
Indices: 7251628--7251677 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
7251618 AAGGGTCTAT
* *
7251628 GATTAAGAGTTTATG-TTTTAG
1 GATTAAGAGTTTATGATTTAAA
* *
7251649 GATTTAGGGTTTATGATTTAAA
1 GATTAAGAGTTTATGATTTAAA
7251671 GATTAAG
1 GATTAAG
7251678 GATTAAGAGT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (22 bp):
GATTAAGAGTTTATGATTTAAA
Found at i:7251884 original size:22 final size:22
Alignment explanation
Indices: 7251830--7251881 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
7251820 TATGGTTAAA
*
7251830 GGTTTAAGGTTTATGAGTTACT
1 GGTTTAAGGTTTATGAATTACT
**
7251852 ATTTTAAGGTTTATGAATTA-T
1 GGTTTAAGGTTTATGAATTACT
7251873 GGTTTAAGG
1 GGTTTAAGG
7251882 GTTGAGGTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.27, C:0.02, G:0.25, T:0.46
Consensus pattern (22 bp):
GGTTTAAGGTTTATGAATTACT
Found at i:7251918 original size:7 final size:7
Alignment explanation
Indices: 7251903--7251933 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
7251893 AAGTTTAGGA
*
7251903 GTTAGGG
1 GTTATGG
7251910 GTTATGG
1 GTTATGG
7251917 GTTATGG
1 GTTATGG
7251924 GTTATGG
1 GTTATGG
7251931 GTT
1 GTT
7251934 CAGGGTTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.13, C:0.00, G:0.45, T:0.42
Consensus pattern (7 bp):
GTTATGG
Found at i:7251925 original size:14 final size:14
Alignment explanation
Indices: 7251903--7251938 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
7251893 AAGTTTAGGA
7251903 GTTAGGGGTTATGG
1 GTTAGGGGTTATGG
*
7251917 GTTATGGGTTATGG
1 GTTAGGGGTTATGG
7251931 GTTCAGGG
1 GTT-AGGG
7251939 TTAATATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 16 0.84
15 3 0.16
ACGTcount: A:0.14, C:0.03, G:0.47, T:0.36
Consensus pattern (14 bp):
GTTAGGGGTTATGG
Found at i:7251965 original size:8 final size:8
Alignment explanation
Indices: 7251949--7251986 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
7251939 TTAATATTAA
7251949 CCCTAAAC
1 CCCTAAAC
*
7251957 CCTTAAAC
1 CCCTAAAC
7251965 CCCTAAA-
1 CCCTAAAC
*
7251972 CCTTAAAC
1 CCCTAAAC
7251980 CCCTAAA
1 CCCTAAA
7251987 AAATCATAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
7 6 0.24
8 19 0.76
ACGTcount: A:0.39, C:0.42, G:0.00, T:0.18
Consensus pattern (8 bp):
CCCTAAAC
Found at i:7251975 original size:15 final size:16
Alignment explanation
Indices: 7251949--7251986 Score: 69
Period size: 15 Copynumber: 2.4 Consensus size: 16
7251939 TTAATATTAA
7251949 CCCTAAACCCTTAAAC
1 CCCTAAACCCTTAAAC
7251965 CCCTAAA-CCTTAAAC
1 CCCTAAACCCTTAAAC
7251980 CCCTAAA
1 CCCTAAA
7251987 AAATCATAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 15 0.68
16 7 0.32
ACGTcount: A:0.39, C:0.42, G:0.00, T:0.18
Consensus pattern (16 bp):
CCCTAAACCCTTAAAC
Done.