Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 280 of 444
Found at i:80915174 original size:43 final size:42
Alignment explanation
Indices: 80915127--80915253 Score: 150
Period size: 43 Copynumber: 3.0 Consensus size: 42
80915117 CATCAACTTA
*
80915127 TGATTTACGTGTAAGACCATGTATGGGACATCGGCATCGTATT
1 TGATTTACGTGTAAGACCATGTCTGGGACAT-GGCATCGTATT
*
80915170 TGATTT-CGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATT
1 TGATTTACGTGTAAGACCATGTCTGGGACA-TGGCATCG-TATT
* * * *
80915213 TGA-TTACATGTAAGACCACGTCTAGGACATTGGCATTGTAT
1 TGATTTACGTGTAAGACCATGTCTGGGACA-TGGCATCGTAT
80915254 GAGCTTTCCG
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
42 33 0.45
43 40 0.55
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
TGATTTACGTGTAAGACCATGTCTGGGACATGGCATCGTATT
Found at i:80919673 original size:42 final size:43
Alignment explanation
Indices: 80919592--80919745 Score: 118
Period size: 43 Copynumber: 3.6 Consensus size: 43
80919582 TCCCAAACTT
* *
80919592 GGTCTTACATGTAATCAAATATCGATGCCACCGTCCCAGATAG
1 GGTCTTACACGAAATCAAATATCGATGCCACCGTCCCAGATAG
* * * *
80919635 GGTCTTACACGAAATCAAATA-CGATGCTGA-TGTCCCAGACAT
1 GGTCTTACACGAAATCAAATATCGATGC-CACCGTCCCAGATAG
* * * * *
80919677 GGTCTCACGCCTAAATCACAA-ATCGATGCCAACGTCCCAGA-CG
1 GGTCTTAC-ACGAAATCA-AATATCGATGCCACCGTCCCAGATAG
* * *
80919720 TGGTCTTACTCGAAAACACATATCGA
1 -GGTCTTACACGAAATCAAATATCGA
80919746 AATGCTATGT
Statistics
Matches: 86, Mismatches: 18, Indels: 14
0.73 0.15 0.12
Matches are distributed among these distances:
42 23 0.27
43 40 0.47
44 23 0.27
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (43 bp):
GGTCTTACACGAAATCAAATATCGATGCCACCGTCCCAGATAG
Found at i:80927330 original size:15 final size:15
Alignment explanation
Indices: 80927300--80927332 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
80927290 TTTTTTTGTG
80927300 TTTATTTTGTGTGAA
1 TTTATTTTGTGTGAA
80927315 TTTATATTTGTG-GAA
1 TTTAT-TTTGTGTGAA
80927330 TTT
1 TTT
80927333 TCGTGATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.21, C:0.00, G:0.18, T:0.61
Consensus pattern (15 bp):
TTTATTTTGTGTGAA
Found at i:80930560 original size:13 final size:13
Alignment explanation
Indices: 80930544--80930576 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
80930534 TTTAATTAAA
*
80930544 TTAGTTAATTAGT
1 TTAGATAATTAGT
80930557 TTAGATAATTAGT
1 TTAGATAATTAGT
80930570 TTA-ATAA
1 TTAGATAA
80930577 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:80935848 original size:12 final size:11
Alignment explanation
Indices: 80935833--80935885 Score: 63
Period size: 11 Copynumber: 4.7 Consensus size: 11
80935823 CTTTTTATTC
80935833 TTATTTTTTTAT
1 TTATTTTTTT-T
*
80935845 TTA-TTTTATT
1 TTATTTTTTTT
*
80935855 TTATTTTATTT
1 TTATTTTTTTT
80935866 TTATTTTTCTTT
1 TTATTTTT-TTT
80935878 TTATTTTT
1 TTATTTTT
80935886 ACTTTCATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
10 4 0.11
11 17 0.49
12 14 0.40
ACGTcount: A:0.15, C:0.02, G:0.00, T:0.83
Consensus pattern (11 bp):
TTATTTTTTTT
Found at i:80935869 original size:6 final size:6
Alignment explanation
Indices: 80935824--80935886 Score: 71
Period size: 6 Copynumber: 11.0 Consensus size: 6
80935814 TCCTTCTATC
*
80935824 TTTTTA TTCTTA TTTTT- TTATTTA -TTTTA -TTTTA -TTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TT-TTTA TTTTTA TTTTTA TTTTTA TTTTTA
*
80935869 TTTTTC TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA
80935887 CTTTCATTTC
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
5 16 0.32
6 34 0.68
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:80935915 original size:5 final size:5
Alignment explanation
Indices: 80935825--80935872 Score: 57
Period size: 5 Copynumber: 9.8 Consensus size: 5
80935815 CCTTCTATCT
80935825 TTTTA TTCTTA -TTT- TTTTA -TTTA TTTTA TTTTA TTTTA TTTTTA TTTT
1 TTTTA TT-TTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA TTTT
80935873 TCTTTTTATT
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
4 9 0.24
5 21 0.55
6 8 0.21
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:80937015 original size:4 final size:4
Alignment explanation
Indices: 80937006--80937031 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
80936996 ATTTGTTCTT
80937006 AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AA
80937032 ACTCAGTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:80938741 original size:13 final size:13
Alignment explanation
Indices: 80938725--80938757 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
80938715 TTTAATTAAA
*
80938725 TTAGTTAATTAGT
1 TTAGATAATTAGT
80938738 TTAGATAATTAGT
1 TTAGATAATTAGT
80938751 TTA-ATAA
1 TTAGATAA
80938758 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:80945400 original size:45 final size:44
Alignment explanation
Indices: 80945317--80945401 Score: 125
Period size: 45 Copynumber: 1.9 Consensus size: 44
80945307 ATGTAATCTG
*
80945317 AACTCATTGAGTTGTGTCTGAGTTCATGATACATATGACATCCA
1 AACTCATTGAGTTGTGTCTAAGTTCATGATACATATGACATCCA
* **
80945361 AACTCATTGAGTTGTGGTCTAAGTTCGTGATATGTATGACA
1 AACTCATTGAGTTGT-GTCTAAGTTCATGATACATATGACA
80945402 CATGTTTTGG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 15 0.42
45 21 0.58
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.35
Consensus pattern (44 bp):
AACTCATTGAGTTGTGTCTAAGTTCATGATACATATGACATCCA
Found at i:80947201 original size:173 final size:173
Alignment explanation
Indices: 80946911--80947261 Score: 675
Period size: 173 Copynumber: 2.0 Consensus size: 173
80946901 AAAGTTTACC
*
80946911 TATACATATTTATTTTTTTTCGAATAGCTATCAAATCCACATACCCATATACCAAATATACCTCT
1 TATACATATTTATTTATTTTCGAATAGCTATCAAATCCACATACCCATATACCAAATATACCTCT
*
80946976 TATAAATAACATCCATTTTAATTTACAAATGCATTACATGTTATAGCACAATACGCATCCATCTA
66 TATAAATAACATCCATTTTAATTTACAAATGCATTACATGTTATAACACAATACGCATCCATCTA
80947041 TTTCTCTATAATTGAAACACATGATTAAACACCATCATATATA
131 TTTCTCTATAATTGAAACACATGATTAAACACCATCATATATA
80947084 TATACATATTTATTTATTTTCGAATAGCTATCAAATCCACATACCCATATACCAAATATACCTCT
1 TATACATATTTATTTATTTTCGAATAGCTATCAAATCCACATACCCATATACCAAATATACCTCT
*
80947149 TATAAATAACATCCATTTTAATTTACTAATGCATTACATGTTATAACACAATACGCATCCATCTA
66 TATAAATAACATCCATTTTAATTTACAAATGCATTACATGTTATAACACAATACGCATCCATCTA
80947214 TTTCTCTATAATTGAAACACATGATTAAACACCATCATATATA
131 TTTCTCTATAATTGAAACACATGATTAAACACCATCATATATA
80947257 TATAC
1 TATAC
80947262 CTAAAGATGA
Statistics
Matches: 175, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
173 175 1.00
ACGTcount: A:0.39, C:0.21, G:0.04, T:0.36
Consensus pattern (173 bp):
TATACATATTTATTTATTTTCGAATAGCTATCAAATCCACATACCCATATACCAAATATACCTCT
TATAAATAACATCCATTTTAATTTACAAATGCATTACATGTTATAACACAATACGCATCCATCTA
TTTCTCTATAATTGAAACACATGATTAAACACCATCATATATA
Found at i:80952262 original size:16 final size:16
Alignment explanation
Indices: 80952243--80952273 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80952233 CTTCTTCACT
80952243 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
80952259 TACTTACTTACTTAA
1 TACTCACTTACTTAA
80952274 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:80952279 original size:20 final size:20
Alignment explanation
Indices: 80952240--80952279 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
80952230 AAACTTCTTC
* *
80952240 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
80952260 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
80952280 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:80952589 original size:53 final size:54
Alignment explanation
Indices: 80952464--80952718 Score: 274
Period size: 55 Copynumber: 4.8 Consensus size: 54
80952454 ACACGGGTAC
* * * *
80952464 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
80952513 CTTACCATTGCCATGCCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
80952566 CTCACCAATGCCATGCCTTGACATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * *
80952621 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
80952674 CCTTACCAATTGTCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
80952719 AAACCCTAAT
Statistics
Matches: 174, Mismatches: 21, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
49 37 0.21
50 1 0.01
52 2 0.01
53 51 0.29
54 10 0.06
55 71 0.41
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:80952655 original size:108 final size:110
Alignment explanation
Indices: 80952511--80952708 Score: 285
Period size: 108 Copynumber: 1.8 Consensus size: 110
80952501 ATCCTTTTGA
* *
80952511 AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGATAGCCTTGCCTTA-GAAACCTCACCAA
80952574 -TGCCATGCCTTGACATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGACATGGTCTTACATGGGACCTTTGCCTTATAGT
* * ** *
80952619 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
* *
80952684 TGTCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGACATGGTCTTACA
80952709 CGGTATCCTT
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.60
109 7 0.09
110 23 0.29
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGACATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:80959819 original size:16 final size:16
Alignment explanation
Indices: 80959800--80959830 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80959790 CTTCTTCACT
80959800 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
80959816 TACTTACTTACTTAA
1 TACTCACTTACTTAA
80959831 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:80959836 original size:20 final size:20
Alignment explanation
Indices: 80959797--80959836 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
80959787 AAACTTCTTC
* *
80959797 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
80959817 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
80959837 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:80960151 original size:53 final size:54
Alignment explanation
Indices: 80960022--80960276 Score: 256
Period size: 55 Copynumber: 4.8 Consensus size: 54
80960012 ACACGGGAAC
* * * *
80960022 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
80960071 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
80960124 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * *
80960179 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
80960232 CCTTACCAATTGTCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
80960277 AAACCCTAAT
Statistics
Matches: 171, Mismatches: 24, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 49 0.29
54 10 0.06
55 70 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:80960213 original size:108 final size:110
Alignment explanation
Indices: 80960069--80960266 Score: 303
Period size: 108 Copynumber: 1.8 Consensus size: 110
80960059 ATCCTTTTGA
* *
80960069 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTA-GAAACCTCACCAA
80960132 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
80960177 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
*
80960242 TGTCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
80960267 CGGTATCCTT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.60
109 7 0.09
110 24 0.30
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:80967365 original size:16 final size:16
Alignment explanation
Indices: 80967346--80967376 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80967336 CTTCTTCACT
80967346 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
80967362 TACTTACTTACTTAA
1 TACTCACTTACTTAA
80967377 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:80967382 original size:20 final size:20
Alignment explanation
Indices: 80967343--80967382 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
80967333 AAACTTCTTC
* *
80967343 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
80967363 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
80967383 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:80967701 original size:53 final size:54
Alignment explanation
Indices: 80967589--80967822 Score: 216
Period size: 55 Copynumber: 4.4 Consensus size: 54
80967579 CATGAATTGT
* * **
80967589 CATGGTCTTACGTGGTATCC-T---TT-TGAAACTTACCATTGCCATATCTTGA
1 CATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATGCCATGCCTTGA
* * * *
80967638 CATGGTCTTACATGGTAGCCTTGCCTTATG-AACTCACCAATGTCATGCCTTGG
1 CATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATGCCATGCCTTGA
* * * *
80967691 CATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATGCCATGTCTTGA
1 CATGGTCTTACATGGTATCC-TTGCCTTAT-GAAACTTACCAATGCCATGCCTTGA
* * *
80967746 TATGGTCTTACATGACT-TCCTTGCCTTA-GAAACCTTACCAATTGCCATGCCTTGG
1 CATGGTCTTACATG-GTATCCTTGCCTTATGAAA-CTTACCAA-TGCCATGCCTTGA
*
80967801 CATGGTCTTACACGGTATCCTT
1 CATGGTCTTACATGGTATCCTT
80967823 AAACCCTAAT
Statistics
Matches: 148, Mismatches: 24, Indels: 20
0.77 0.12 0.10
Matches are distributed among these distances:
49 18 0.12
50 1 0.01
52 2 0.01
53 47 0.32
54 11 0.07
55 67 0.45
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
CATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATGCCATGCCTTGA
Found at i:80976371 original size:47 final size:47
Alignment explanation
Indices: 80976302--80976522 Score: 184
Period size: 50 Copynumber: 4.7 Consensus size: 47
80976292 ACTTGTGTGA
* *
80976302 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGTATCGAGACGAGT
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCATCGAGATGAGT
* *
80976349 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGAC-TACTAGAT--GT
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCAT-CGAGATGAGT
* * * * * * *
80976393 GTTAGTGTAAGACCAAGTCTGGGACATGCCATCGACATAGATATGTGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCATCGAGA--TGAGT
* *
80976443 GCTAGTGTAAGACTATAT-TCGGGACATGGCATCGGCCTCGAAGATGA-T
1 GCTAGTGTAAGAC-ATGTCT-GGGACATGGCATCGGCATCG-AGATGAGT
* * *
80976491 ACCAGTGTAAGACCATGTCTAGGACATGGCAT
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCAT
80976523 TAGCACCATG
Statistics
Matches: 137, Mismatches: 24, Indels: 25
0.74 0.13 0.13
Matches are distributed among these distances:
44 13 0.09
45 14 0.10
46 19 0.14
47 27 0.20
48 25 0.18
49 7 0.05
50 30 0.22
51 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCATCGAGATGAGT
Found at i:80976434 original size:44 final size:44
Alignment explanation
Indices: 80976304--80976428 Score: 135
Period size: 47 Copynumber: 2.7 Consensus size: 44
80976294 TTGTGTGAGC
* * * * *
80976304 TAGTGTAAGACATGTCTGGGACATGGCATCG-GTATCGAGACGAGTGC
1 TAGTGTAAGACAAGTCTGGGACAT-GCATCGACTA-CTAGA--TGTGT
*
80976351 TAGTGTAAGACATGTCTGGGACATGCATCGACTACTAGATGTGT
1 TAGTGTAAGACAAGTCTGGGACATGCATCGACTACTAGATGTGT
80976395 TAGTGTAAGACCAAGTCTGGGACATGCCATCGAC
1 TAGTGTAAGA-CAAGTCTGGGACATG-CATCGAC
80976429 ATAGATATGT
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
44 13 0.19
45 14 0.20
46 17 0.24
47 26 0.37
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (44 bp):
TAGTGTAAGACAAGTCTGGGACATGCATCGACTACTAGATGTGT
Found at i:80976553 original size:25 final size:25
Alignment explanation
Indices: 80976502--80976554 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
80976492 CCAGTGTAAG
*
80976502 ACCATGTCTAGGACATGGCATTAGC
1 ACCATGTCTAGGACATGGCATCAGC
* *
80976527 ACCATGTCTGGGACATGGCATCGGC
1 ACCATGTCTAGGACATGGCATCAGC
80976552 ACC
1 ACC
80976555 TTACCCATGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (25 bp):
ACCATGTCTAGGACATGGCATCAGC
Found at i:80978865 original size:46 final size:46
Alignment explanation
Indices: 80978813--80978988 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
80978803 TGGTTGAGCA
* *
80978813 TCCGAACTCGTCGAGTTTAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
80978859 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
80978904 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
80978952 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80978989 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80978969 original size:93 final size:93
Alignment explanation
Indices: 80978810--80978980 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
80978800 GGATGGTTGA
* * **
80978810 GCATCCGAACTCGTCGAGTTTAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80978875 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
80978903 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80978968 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
80978981 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80991865 original size:40 final size:40
Alignment explanation
Indices: 80991808--80992033 Score: 307
Period size: 40 Copynumber: 5.7 Consensus size: 40
80991798 TCGAATGATG
* * * *
80991808 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
80991848 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
80991888 TCCGGACTAAGATCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
80991928 TCCGGACTAAGATCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
80991968 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGGTACTATAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
80992009 -CCGGGCTATG-TCCCGAAGGCATTTG
1 TCCGGACTAAGAT-CCGAAGGCATTTG
80992034 AACGAGTAGC
Statistics
Matches: 173, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
39 1 0.01
40 162 0.94
41 10 0.06
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:80992873 original size:31 final size:31
Alignment explanation
Indices: 80992832--80992895 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
80992822 CCTTTTCATA
*
80992832 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
80992863 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
80992894 TT
1 TT
80992896 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:80993164 original size:23 final size:23
Alignment explanation
Indices: 80993110--80993322 Score: 363
Period size: 23 Copynumber: 9.1 Consensus size: 23
80993100 CCTAGCCTCT
*
80993110 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
80993133 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
80993157 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
80993180 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
80993203 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
80993227 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
80993251 TTTAATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
80993274 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
80993297 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
80993320 TTT
1 TTT
80993323 TGCACTTCCT
Statistics
Matches: 183, Mismatches: 5, Indels: 3
0.96 0.03 0.02
Matches are distributed among these distances:
23 115 0.63
24 68 0.37
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:80993215 original size:94 final size:94
Alignment explanation
Indices: 80993089--80993323 Score: 393
Period size: 94 Copynumber: 2.5 Consensus size: 94
80993079 GCTTTATCAT
* *
80993089 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAA
*
80993153 GCCCTTTAATAACTGGGGCATAAGCCCTTTA
64 GCCCTTTAATAACTAGGGCATAAGCCCTTTA
* *
80993184 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
80993249 CCTTTAATAACTAGGGCATAAGCCCTTTA
66 CCTTTAATAACTAGGGCATAAGCCCTTTA
80993278 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
80993324 GCACTTCCTC
Statistics
Matches: 133, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
93 26 0.20
94 95 0.71
95 12 0.09
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (94 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
CCTTTAATAACTAGGGCATAAGCCCTTTA
Found at i:80993395 original size:9 final size:9
Alignment explanation
Indices: 80993381--80993437 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
80993371 ATCTCATGTG
80993381 CATATCATA
1 CATATCATA
*
80993390 CATATCATGTG
1 CATATCA--TA
80993401 CATATCATA
1 CATATCATA
* *
80993410 CATGTCATGTG
1 CATATCA--TA
80993421 CATATCATA
1 CATATCATA
80993430 CATATCAT
1 CATATCAT
80993438 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:80993397 original size:20 final size:20
Alignment explanation
Indices: 80993369--80993439 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
80993359 GCATTTATGA
*
80993369 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
80993389 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
80993409 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
80993429 ACATATCATGT
1 ACATATCATGT
80993440 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:80993404 original size:11 final size:11
Alignment explanation
Indices: 80993374--80993428 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
80993364 TATGAACATC
80993374 TCATGTGCATA
1 TCATGTGCATA
*
80993385 TCA--TACATA
1 TCATGTGCATA
80993394 TCATGTGCATA
1 TCATGTGCATA
* *
80993405 TCA--TACATG
1 TCATGTGCATA
80993414 TCATGTGCATA
1 TCATGTGCATA
80993425 TCAT
1 TCAT
80993429 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:80993504 original size:25 final size:25
Alignment explanation
Indices: 80993476--80993523 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
80993466 ATATATAAAC
* *
80993476 CCTAGGGGTATAATGGTCATTTTGA
1 CCTAGGGGCAAAATGGTCATTTTGA
80993501 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
80993524 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTGA
Found at i:80994784 original size:27 final size:27
Alignment explanation
Indices: 80994764--80995158 Score: 465
Period size: 27 Copynumber: 14.6 Consensus size: 27
80994754 AGGGTATTTT
*
80994764 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
80994791 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
80994818 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
80994845 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
80994872 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
80994899 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
80994926 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
80994953 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
80994980 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
80995007 GGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
80995034 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
80995061 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
80995088 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
80995115 AGTAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
80995142 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
80995159 GGAGTACTTT
Statistics
Matches: 326, Mismatches: 34, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
26 3 0.01
27 319 0.98
28 4 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:80994810 original size:54 final size:54
Alignment explanation
Indices: 80994765--80995158 Score: 515
Period size: 54 Copynumber: 7.3 Consensus size: 54
80994755 GGGTATTTTA
* * * *
80994765 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* *
80994819 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * * *
80994873 GTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * * **
80994927 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
*
80994981 GTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* ** *
80995035 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* ** * *
80995089 GTAATTTTACAAATCGAGGGTAAAACAGTAATTCTATAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACG
80995143 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
80995159 GGAGTACTTT
Statistics
Matches: 301, Mismatches: 34, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
53 2 0.01
54 297 0.99
55 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:80994850 original size:81 final size:81
Alignment explanation
Indices: 80994765--80995158 Score: 535
Period size: 81 Copynumber: 4.9 Consensus size: 81
80994755 GGGTATTTTA
* * * *
80994765 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTA
*
80994830 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAACG
* * *
80994846 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC-GATAATTATGT
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAG-TAATTCTGT
* *
80994910 AAATCGGGGGTAAAATG
65 AAATCGAGGGTAAAACG
* * *
80994927 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGT
1 GTAATTTTGTAAATCGA-GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGT
80994991 AAA-CTGAGGGTAAAACG
65 AAATC-GAGGGTAAAACG
* * * *
80995008 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTA
80995073 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
** * *
80995089 GTAATTTTACAAATCGAGGGTAAAACAGTAATTCTATAAA-CTGAGGGTAAAACGGTAATTCTGT
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATC-GAGGGTAAAACAGTAATTCTGT
80995153 AAATCG
65 AAATCG
80995159 GGAGTACTTT
Statistics
Matches: 280, Mismatches: 26, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
80 4 0.01
81 273 0.98
82 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (81 bp):
GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTA
AATCGAGGGTAAAACG
Found at i:81003805 original size:40 final size:40
Alignment explanation
Indices: 81003718--81003983 Score: 351
Period size: 40 Copynumber: 6.7 Consensus size: 40
81003708 TCGAATGATG
* * * * *
81003718 TCCGGGCTAAG-TCCCGAAGAC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
81003758 TCTGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
81003798 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
81003838 TCCGGACTAAGATCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
81003878 TCCGGACTAAGATCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
* *
81003918 TTCGGACTAAGATCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
81003959 -CCGGGCTATG-TCCCGAAGGCATTTG
1 TCCGGACTAAGAT-CCGAAGGCATTTG
81003984 AACGAGTAGC
Statistics
Matches: 207, Mismatches: 15, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
39 1 0.00
40 196 0.95
41 10 0.05
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:81007545 original size:93 final size:93
Alignment explanation
Indices: 81007386--81007556 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
81007376 GCCCATAAGT
* * * *
81007386 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAGGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
81007451 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGCTCGGATGCCTAGTTACATTTCAC
*
81007479 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81007544 CGAGCTCGGATGC
66 CGAGCTCGGATGC
81007557 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATTTCAC
Found at i:81007553 original size:46 final size:46
Alignment explanation
Indices: 81007378--81007553 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
81007368 TGTAACCCGC
* *
81007378 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * * *
81007424 CCATAGGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * * *
81007474 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
81007517 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
81007554 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.58
47 28 0.27
48 1 0.01
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:81011063 original size:33 final size:34
Alignment explanation
Indices: 81011026--81011089 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
81011016 AAGGAAAGAA
81011026 TGAGGT-AAAA-ACAAGAGAGAAAAACAAAGAGTG
1 TGAGGTAAAAACACAAGAG-GAAAAACAAAGAGTG
*
81011059 TGAGGTAAAAACACAAGAGGAAAAAGAAAGA
1 TGAGGTAAAAACACAAGAGGAAAAACAAAGA
81011090 AAATGAGAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 6 0.21
34 15 0.54
35 7 0.25
ACGTcount: A:0.59, C:0.06, G:0.27, T:0.08
Consensus pattern (34 bp):
TGAGGTAAAAACACAAGAGGAAAAACAAAGAGTG
Found at i:81013151 original size:43 final size:41
Alignment explanation
Indices: 81013002--81013171 Score: 148
Period size: 43 Copynumber: 4.1 Consensus size: 41
81012992 TCATATAACT
* * * *
81013002 CATACAATGCCATATCCTAGATATGGTCTTACATGTTATCA
1 CATACAATGCCATATCCCAGACATGGTCTTACACGTAATCA
* * *
81013043 CATATCGATGCCAATGTCCCAGACAT-G-CTTACACGAAATCA
1 CATA-CAATGCC-ATATCCCAGACATGGTCTTACACGTAATCA
* * * *
81013084 TATA-ATGATTCCATATCCTAGACATGGTATTACACGTAATCA
1 CATACA--ATGCCATATCCCAGACATGGTCTTACACGTAATCA
* *
81013126 CAATACAATGCCAATATCCCAGACATGGTCTTACATGTAATTA
1 C-ATACAATGCC-ATATCCCAGACATGGTCTTACACGTAATCA
81013169 CAT
1 CAT
81013172 CTCAGTAATC
Statistics
Matches: 100, Mismatches: 20, Indels: 17
0.73 0.15 0.12
Matches are distributed among these distances:
40 11 0.11
41 23 0.23
42 25 0.25
43 40 0.40
44 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.12, T:0.29
Consensus pattern (41 bp):
CATACAATGCCATATCCCAGACATGGTCTTACACGTAATCA
Found at i:81019879 original size:38 final size:40
Alignment explanation
Indices: 81019827--81019904 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
81019817 TATTTTAGTT
81019827 TGTGTCTTTAATTA-TGTCTT-AGTTTGAACATCATTAATA
1 TGTGTCTTTAATTAGTGTCTTAAGTTTG-ACATCATTAATA
*
81019866 TGTGT-TTTAATTATGTGTCTTAATTTTGACATCATTAAT
1 TGTGTCTTTAATTA-GTGTCTTAAGTTTGACATCATTAAT
81019905 GTTTGTCTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
38 8 0.23
39 5 0.14
40 17 0.49
41 5 0.14
ACGTcount: A:0.27, C:0.09, G:0.13, T:0.51
Consensus pattern (40 bp):
TGTGTCTTTAATTAGTGTCTTAAGTTTGACATCATTAATA
Found at i:81021808 original size:43 final size:42
Alignment explanation
Indices: 81021720--81021839 Score: 134
Period size: 43 Copynumber: 2.8 Consensus size: 42
81021710 ACATATCGAC
* * * * *
81021720 GCCACTGTCCCAGACAAGGTCTTACACGAAATCGATTAATGAT
1 GCCAATGTCCCAGACATGGTCTTACACGTAATC-ATAAATAAT
81021763 GCCAATGTCCCAGACATGGTCTTACACGTAATC-TAAATACAAT
1 GCCAATGTCCCAGACATGGTCTTACACGTAATCATAAAT--AAT
* * *
81021806 GCCAATGTCCCAAACATAGTCTTACATGTAATCA
1 GCCAATGTCCCAGACATGGTCTTACACGTAATCA
81021840 CATCTTGGTA
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
41 4 0.06
43 62 0.94
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (42 bp):
GCCAATGTCCCAGACATGGTCTTACACGTAATCATAAATAAT
Found at i:81025969 original size:46 final size:46
Alignment explanation
Indices: 81025902--81026164 Score: 197
Period size: 46 Copynumber: 5.7 Consensus size: 46
81025892 TGTAACCCGC
*
81025902 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTC-GGACATTCGCAT
** * *
81025948 CCATAAGTGAACTCAGACTCAACTCAATAAGCTCAGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTC-G--GAC-A-TTCGCAT
* * *
81025998 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
81026041 CCATAAGTGAACTC-GAACTCAACTCAACAAGCTCGGATACCCAGTT-ACAT
1 CCATAAGTGAACTCAG-ACTCAACTCAACGAGCTCGG--A--CA-TTCGCAT
* * * *
81026091 -C-TCA-CGAACTC-GAACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCAG-ACTCAACTCAACGAGCTCGGACATTCGCAT
*
81026134 CTATAAGTGAACTCAGACTCAACTCAACGAG
1 CCATAAGTGAACTCAGACTCAACTCAACGAG
81026165 TTCAGATGCC
Statistics
Matches: 172, Mismatches: 25, Indels: 40
0.73 0.11 0.17
Matches are distributed among these distances:
42 4 0.02
43 8 0.05
44 3 0.02
45 6 0.03
46 79 0.46
47 50 0.29
48 6 0.03
49 3 0.02
50 9 0.05
51 4 0.02
ACGTcount: A:0.33, C:0.30, G:0.16, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:81026015 original size:93 final size:92
Alignment explanation
Indices: 81025910--81026176 Score: 394
Period size: 93 Copynumber: 2.9 Consensus size: 92
81025900 GCCCATAAGT
*
81025910 GAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTC-GACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
* *
81025974 ATAAGCTCAGATGCCTAGTTACATCTCAC
64 ACAAGCTCAGATGCCCAGTTACATCTCAC
81026003 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTC-GAACTCAACTCA
1 GAACTC-GACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAG-ACTCAACTCA
* *
81026067 ACAAGCTCGGATACCCAGTTACATCTCAC
64 ACAAGCTCAGATGCCCAGTTACATCTCAC
* *
81026096 GAACTCGAACTCAACTCAACGAGTTCGGACGTTCGCATCTATAAGTGAACTCAGACTCAACTCAA
1 GAACTCG-ACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
* *
81026161 CGAGTTCAGATGCCCA
65 CAAGCTCAGATGCCCA
81026177 AATATCTGAA
Statistics
Matches: 158, Mismatches: 12, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
92 4 0.03
93 153 0.97
94 1 0.01
ACGTcount: A:0.33, C:0.30, G:0.16, T:0.21
Consensus pattern (92 bp):
GAACTCGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
AAGCTCAGATGCCCAGTTACATCTCAC
Found at i:81026112 original size:47 final size:47
Alignment explanation
Indices: 81025956--81026124 Score: 136
Period size: 47 Copynumber: 3.6 Consensus size: 47
81025946 ATCCATAAGT
* * * *
81025956 GAACTCAGACTCAACTCAATAAGCTCAGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACAAGCTCGGATACCCAGTTACATCTCAC
* * * * *
81026003 GAACTCAGACTCAACTCAACGAGTTCGG--A--CA-TTCGCATCCATAAGT
1 GAACTCAGACTCAACTCAACAAGCTCGGATACCCAGTT-ACAT-C-TCA-C
81026049 GAACTC-GAACTCAACTCAACAAGCTCGGATACCCAGTTACATCTCAC
1 GAACTCAG-ACTCAACTCAACAAGCTCGGATACCCAGTTACATCTCAC
* *
81026096 GAACTC-GAACTCAACTCAACGAGTTCGGA
1 GAACTCAG-ACTCAACTCAACAAGCTCGGA
81026125 CGTTCGCATC
Statistics
Matches: 96, Mismatches: 16, Indels: 20
0.73 0.12 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 3 0.03
46 24 0.25
47 51 0.53
48 3 0.03
49 1 0.01
50 5 0.05
51 2 0.02
ACGTcount: A:0.34, C:0.30, G:0.15, T:0.21
Consensus pattern (47 bp):
GAACTCAGACTCAACTCAACAAGCTCGGATACCCAGTTACATCTCAC
Found at i:81029563 original size:27 final size:27
Alignment explanation
Indices: 81029533--81029585 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
81029523 TTACCTAGAC
* *
81029533 CCTCTAAT-TGATAAGATGACTATTATA
1 CCTCT-ATGTGATAAAATAACTATTATA
81029560 CCTCTATGTGATAAAATAACTATTAT
1 CCTCTATGTGATAAAATAACTATTAT
81029586 GCCCCTGTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 2 0.09
27 21 0.91
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (27 bp):
CCTCTATGTGATAAAATAACTATTATA
Found at i:81029596 original size:27 final size:27
Alignment explanation
Indices: 81029541--81029598 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
81029531 ACCCTCTAAT
* * *
81029541 TGATAAGATGACTATTATACCTCTATG
1 TGATAAAATAACTATTATACCCCTATG
* *
81029568 TGATAAAATAACTATTATGCCCCTGTG
1 TGATAAAATAACTATTATACCCCTATG
81029595 TGAT
1 TGAT
81029599 GTATGACTGC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.36
Consensus pattern (27 bp):
TGATAAAATAACTATTATACCCCTATG
Found at i:81032549 original size:64 final size:63
Alignment explanation
Indices: 81032468--81032651 Score: 190
Period size: 67 Copynumber: 2.9 Consensus size: 63
81032458 AGACATTATG
*
81032468 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * * * *
81032531 TATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGGTACGAGA
1 -ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
81032596 TA
62 TA
** * * * *
81032598 AACTAGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
81032652 CGAACTATAT
Statistics
Matches: 96, Mismatches: 20, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 19 0.20
67 29 0.30
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:81033713 original size:2 final size:2
Alignment explanation
Indices: 81033708--81033733 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
81033698 ATATGACATG
81033708 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
81033734 ACTAGTCTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:81037730 original size:28 final size:29
Alignment explanation
Indices: 81037699--81037777 Score: 81
Period size: 28 Copynumber: 2.8 Consensus size: 29
81037689 TGCTTAATAC
*
81037699 TCAATCACGCACACTTAGTGCCAT-T-GAT
1 TCAAACACGCACACTTAGTGCCATATAG-T
* * *
81037727 TCAAGCCCGCACACATAGTGCCATATAGT
1 TCAAACACGCACACTTAGTGCCATATAGT
* *
81037756 CCAAACTCGCACACTTAGTGCC
1 TCAAACACGCACACTTAGTGCC
81037778 GTACATTACA
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
28 21 0.50
29 20 0.48
30 1 0.02
ACGTcount: A:0.29, C:0.33, G:0.15, T:0.23
Consensus pattern (29 bp):
TCAAACACGCACACTTAGTGCCATATAGT
Found at i:81037774 original size:29 final size:29
Alignment explanation
Indices: 81037706--81037807 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
81037696 TACTCAATCA
* *
81037706 CGCACACTTAGTGCCAT-T-GATTCAAGCC
1 CGCACACTTAGTGCCATATAG-TACAAGCT
* * *
81037734 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATAGTACAAGCT
* * *
81037763 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATAGTACAAGCT
*
81037792 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
81037808 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
28 16 0.27
29 43 0.72
30 1 0.02
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATAGTACAAGCT
Found at i:81045668 original size:29 final size:27
Alignment explanation
Indices: 81045634--81045735 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
81045624 TACTCAATCA
*
81045634 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
81045663 CGCACACATAGTGCCATATAGTCCAA-AT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
81045691 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
81045720 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
81045736 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
27 1 0.02
28 22 0.37
29 37 0.62
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:81045702 original size:28 final size:29
Alignment explanation
Indices: 81045663--81045735 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 29
81045653 GATTCAAGCC
* * *
81045663 CGCACACATAGTGCCATATAGTCCAA-AT
1 CGCACACTTAGTGCCATACAGTACAAGAT
* *
81045691 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCATACAGTACAAGAT
*
81045720 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
81045736 ATCTCGTCAC
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
28 22 0.58
29 16 0.42
ACGTcount: A:0.32, C:0.33, G:0.15, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACAGTACAAGAT
Found at i:81051953 original size:73 final size:73
Alignment explanation
Indices: 81051863--81052004 Score: 230
Period size: 73 Copynumber: 1.9 Consensus size: 73
81051853 TGCTCTTGAG
* * * * * *
81051863 GTTCTTTGGTGCTTGGAGGCCGAATGTTGTTGGGGTTCCTTTTGGGTATCTTTCTGTTTTGCCTA
1 GTTCTTTGCTACTTGGAGGCCGAATGTTGTTAGGGTTCCTTTTGGGTATCTTTCTATTTTACCAA
81051928 TTTCGACT
66 TTTCGACT
81051936 GTTCTTTGCTACTTGGAGGCCGAATGTTGTTAGGGTTCCTTTTGGGTATCTTTCTATTTTACCAA
1 GTTCTTTGCTACTTGGAGGCCGAATGTTGTTAGGGTTCCTTTTGGGTATCTTTCTATTTTACCAA
81052001 TTTC
66 TTTC
81052005 AACTTTGGCA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
73 63 1.00
ACGTcount: A:0.11, C:0.17, G:0.25, T:0.46
Consensus pattern (73 bp):
GTTCTTTGCTACTTGGAGGCCGAATGTTGTTAGGGTTCCTTTTGGGTATCTTTCTATTTTACCAA
TTTCGACT
Found at i:81053384 original size:27 final size:27
Alignment explanation
Indices: 81053353--81053410 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
81053343 ACCCTCTAAT
81053353 TGATAAAATAACTATTATGCCCCTATG
1 TGATAAAATAACTATTATGCCCCTATG
*
81053380 TGATAAAATGACTATTATGCCCCTATG
1 TGATAAAATAACTATTATGCCCCTATG
81053407 TGAT
1 TGAT
81053411 GTATGACTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (27 bp):
TGATAAAATAACTATTATGCCCCTATG
Found at i:81054658 original size:27 final size:27
Alignment explanation
Indices: 81054610--81054768 Score: 173
Period size: 27 Copynumber: 5.9 Consensus size: 27
81054600 GCGAGGCTGC
* * * *
81054610 CAGATATTGCGACGGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
81054637 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
81054663 CAAATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
81054690 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
81054717 CATATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
81054744 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
81054769 GACGCTTCCT
Statistics
Matches: 112, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
26 9 0.08
27 99 0.88
28 4 0.04
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:81054769 original size:54 final size:54
Alignment explanation
Indices: 81054628--81054771 Score: 245
Period size: 54 Copynumber: 2.7 Consensus size: 54
81054618 GCGACGGAGT
* *
81054628 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAAATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAAATATATGTGGCAGAGC
*
81054682 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACATATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAAATATATGTGGCAGAGC
81054736 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
81054772 GCTTCCTCCA
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
53 5 0.06
54 81 0.94
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAAATATATGTGGCAGAGC
Found at i:81056411 original size:26 final size:26
Alignment explanation
Indices: 81056380--81056487 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
81056370 TGAAATGCCC
* *
81056380 ATCATGGAACATTTACCAAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
81056406 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
81056432 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
81056458 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
81056484 ATCA
1 ATCA
81056488 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:81059843 original size:46 final size:45
Alignment explanation
Indices: 81059734--81059871 Score: 196
Period size: 46 Copynumber: 3.1 Consensus size: 45
81059724 TGGCTCTCAC
81059734 ACATC-CGT-GCCGATGCATGTCCCAGACATGTCTTACACTAGC-
1 ACATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCT
*
81059776 ACATCTCGTAGCCGATGCATGTCCCA-AGCATGTATTACACTAGCTT
1 ACATCTCGTAGCCGATGCATGTCCCAGA-CATGTCTTACACTAGC-T
81059822 ACATCTCG-AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCT
1 ACATCTCGTA-GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
81059867 CACAT
1 -ACAT
81059872 AACAGCAGTG
Statistics
Matches: 86, Mismatches: 2, Indels: 12
0.86 0.02 0.12
Matches are distributed among these distances:
42 5 0.06
43 4 0.05
44 31 0.36
45 2 0.02
46 43 0.50
47 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.25
Consensus pattern (45 bp):
ACATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCT
Found at i:81063039 original size:28 final size:27
Alignment explanation
Indices: 81062976--81063045 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
81062966 ATAGTGAGTC
81062976 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
81063003 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
81063031 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81063046 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:81067637 original size:30 final size:28
Alignment explanation
Indices: 81067601--81067660 Score: 75
Period size: 30 Copynumber: 2.1 Consensus size: 28
81067591 TTTATTTCAC
*
81067601 AATTTAACCCCTCAATTTACACTTTTTCTA
1 AATTTAACCCCT-AATTCACA-TTTTTCTA
* *
81067631 AATTTAATCCCTAATTCACATTTTTGTA
1 AATTTAACCCCTAATTCACATTTTTCTA
81067659 AA
1 AA
81067661 AAATCACTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 9 0.33
29 7 0.26
30 11 0.41
ACGTcount: A:0.33, C:0.22, G:0.02, T:0.43
Consensus pattern (28 bp):
AATTTAACCCCTAATTCACATTTTTCTA
Found at i:81076831 original size:130 final size:130
Alignment explanation
Indices: 81076598--81076858 Score: 443
Period size: 130 Copynumber: 2.0 Consensus size: 130
81076588 AATAAGGCGA
* *
81076598 AGCTTAAGATACACAAAGAACGAGCAAGAAGACGATATTCAACCCCCAACCGAAGAGATGGCTGA
1 AGCTTAAGATACACAAAGAACGAGCAAGAAGACGATACTCAACCCCCAACCGAAGAGATGGCTAA
* *
81076663 AAACCAAGGCAAGTAGCTACCTCCTGTAATTGCGGCTAATCAAAATCCTGCTCCACGTACTATGT
66 AAACCAAGGCAAGTAGCTACCTCCTGCAATTGCGGCTAATCAAAATCCTACTCCACGTACTATGT
* *
81076728 AGCTTAAGATACACAGAGAACGAGCAAGAAGACGATACTCAACCCCCAACTGAAGAGATGGCTAA
1 AGCTTAAGATACACAAAGAACGAGCAAGAAGACGATACTCAACCCCCAACCGAAGAGATGGCTAA
*
81076793 AAACCAAGGCAA-TCAGCTACCTCCTGCAATTGTGGCTAATCAAAATCCTACTCCACGTACTATG
66 AAACCAAGGCAAGT-AGCTACCTCCTGCAATTGCGGCTAATCAAAATCCTACTCCACGTACTATG
81076857 T
130 T
81076858 A
1 A
81076859 TGATTAAGCT
Statistics
Matches: 123, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
129 1 0.01
130 122 0.99
ACGTcount: A:0.38, C:0.26, G:0.18, T:0.18
Consensus pattern (130 bp):
AGCTTAAGATACACAAAGAACGAGCAAGAAGACGATACTCAACCCCCAACCGAAGAGATGGCTAA
AAACCAAGGCAAGTAGCTACCTCCTGCAATTGCGGCTAATCAAAATCCTACTCCACGTACTATGT
Found at i:81087465 original size:12 final size:11
Alignment explanation
Indices: 81087450--81087527 Score: 50
Period size: 11 Copynumber: 6.7 Consensus size: 11
81087440 CCGGCGATGA
81087450 TTATGTTTAATT
1 TTAT-TTTAATT
*
81087462 TTATTTT-GTAT
1 TTATTTTAAT-T
*
81087473 TTATTTTTATTT
1 TTA-TTTTAATT
*
81087485 TTATTTTTATT
1 TTATTTTAATT
*
81087496 TTATTTTTATT
1 TTATTTTAATT
* *
81087507 GTCATTTTTATTT
1 -TTA-TTTTAATT
81087520 TTATTTTA
1 TTATTTTA
81087528 TGTTTTTATT
Statistics
Matches: 53, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
10 1 0.02
11 29 0.55
12 16 0.30
13 7 0.13
ACGTcount: A:0.19, C:0.01, G:0.04, T:0.76
Consensus pattern (11 bp):
TTATTTTAATT
Found at i:81087481 original size:6 final size:6
Alignment explanation
Indices: 81087450--81087537 Score: 92
Period size: 6 Copynumber: 14.8 Consensus size: 6
81087440 CCGGCGATGA
* *
81087450 TTATGT TTAATT TTATTT TGTA--T TTATTT TTATTT TTATTT TTA-TT
1 TTATTT TTATTT TTATTT T-TATTT TTATTT TTATTT TTATTT TTATTT
* * *
81087496 TTATTT TTATTG TCATTT TTATTT TTATTT TATGTTT TTATT
1 TTATTT TTATTT TTATTT TTATTT TTATTT T-TATTT TTATT
81087538 AATTTCACCC
Statistics
Matches: 68, Mismatches: 9, Indels: 10
0.78 0.10 0.11
Matches are distributed among these distances:
4 2 0.03
5 7 0.10
6 52 0.76
7 7 0.10
ACGTcount: A:0.18, C:0.01, G:0.05, T:0.76
Consensus pattern (6 bp):
TTATTT
Found at i:81087481 original size:23 final size:23
Alignment explanation
Indices: 81087450--81087526 Score: 86
Period size: 23 Copynumber: 3.3 Consensus size: 23
81087440 CCGGCGATGA
*
81087450 TTATGTTTAATTTTATTTTGTA-T
1 TTATTTTTAATTTTATTTT-TATT
*
81087473 TTATTTTTATTTTTATTTTTATT
1 TTATTTTTAATTTTATTTTTATT
*
81087496 TTATTTTT-ATTGTCATTTTTATTT
1 TTATTTTTAATT-TTATTTTTA-TT
81087520 TTATTTT
1 TTATTTT
81087527 ATGTTTTTAT
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
22 4 0.09
23 34 0.72
24 9 0.19
ACGTcount: A:0.18, C:0.01, G:0.04, T:0.77
Consensus pattern (23 bp):
TTATTTTTAATTTTATTTTTATT
Found at i:81087492 original size:29 final size:29
Alignment explanation
Indices: 81087450--81087528 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 29
81087440 CCGGCGATGA
* * * *
81087450 TTATGTTTAATTTTATTTTGTATTTATTT
1 TTATTTTTATTTTTATTTTATATTTATTG
*
81087479 TTATTTTTATTTTTATTTTATTTTTATTG
1 TTATTTTTATTTTTATTTTATATTTATTG
*
81087508 TCATTTTTATTTTTATTTTAT
1 TTATTTTTATTTTTATTTTAT
81087529 GTTTTTATTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.19, C:0.01, G:0.04, T:0.76
Consensus pattern (29 bp):
TTATTTTTATTTTTATTTTATATTTATTG
Found at i:81087542 original size:29 final size:28
Alignment explanation
Indices: 81087455--81087542 Score: 83
Period size: 29 Copynumber: 3.0 Consensus size: 28
81087445 GATGATTATG
*
81087455 TTTAATTTTATTTTGTATTTATTT-TT-ATT
1 TTTATTTTTA-TTT-TATTT-TTTATTAATT
*
81087484 TTTATTTTTATTTTA-TTTTTATTGTCATT
1 TTTATTTTTATTTTATTTTTTA-T-TAATT
81087513 TTTATTTTTATTTTATGTTTTTATTAATT
1 TTTATTTTTATTTTAT-TTTTTATTAATT
81087542 T
1 T
81087543 CACCCTTAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 12
0.78 0.03 0.18
Matches are distributed among these distances:
25 3 0.06
26 2 0.04
27 3 0.06
28 4 0.08
29 32 0.63
30 1 0.02
31 6 0.12
ACGTcount: A:0.19, C:0.01, G:0.03, T:0.76
Consensus pattern (28 bp):
TTTATTTTTATTTTATTTTTTATTAATT
Found at i:81091799 original size:23 final size:23
Alignment explanation
Indices: 81091757--81091817 Score: 56
Period size: 22 Copynumber: 2.7 Consensus size: 23
81091747 ACCATCTTCT
81091757 TTTCTTCACTTCTTTATT-AATA
1 TTTCTTCACTTCTTTATTAAATA
*
81091779 TTTCTTCTACTT-TTTCTTTAAATA
1 TTTCTTC-ACTTCTTT-ATTAAATA
*
81091803 TTCTCCTC-CTTCTTT
1 TT-TCTTCACTTCTTT
81091818 CAAGTGTCAC
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
22 10 0.31
23 9 0.28
24 9 0.28
25 4 0.12
ACGTcount: A:0.16, C:0.23, G:0.00, T:0.61
Consensus pattern (23 bp):
TTTCTTCACTTCTTTATTAAATA
Found at i:81094100 original size:31 final size:31
Alignment explanation
Indices: 81094062--81094123 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
81094052 TTAAGGGAAG
81094062 AAAAAGTAATCAAGATGTAACTTGAATTATC
1 AAAAAGTAATCAAGATGTAACTTGAATTATC
81094093 AAAAAGTAATCAAGATGTAACTTGAATTATC
1 AAAAAGTAATCAAGATGTAACTTGAATTATC
81094124 TTAGAAAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.48, C:0.10, G:0.13, T:0.29
Consensus pattern (31 bp):
AAAAAGTAATCAAGATGTAACTTGAATTATC
Found at i:81094198 original size:16 final size:16
Alignment explanation
Indices: 81094177--81094207 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81094167 AACCAAAACA
*
81094177 AAAAAAAGAAAATAAT
1 AAAAAAACAAAATAAT
81094193 AAAAAAACAAAATAA
1 AAAAAAACAAAATAA
81094208 AGAAAGTGGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.84, C:0.03, G:0.03, T:0.10
Consensus pattern (16 bp):
AAAAAAACAAAATAAT
Found at i:81096230 original size:46 final size:47
Alignment explanation
Indices: 81096124--81096245 Score: 156
Period size: 46 Copynumber: 2.6 Consensus size: 47
81096114 TGTCTTCGAC
** * *
81096124 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
*
81096174 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
81096220 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
81096246 CTGTCCTGTC
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
46 35 0.54
50 30 0.46
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:81096251 original size:5 final size:5
Alignment explanation
Indices: 81096241--81096265 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
81096231 TGGCTCATTT
81096241 CTGTC CTGTC CTGTC CTGTC CTGTC
1 CTGTC CTGTC CTGTC CTGTC CTGTC
81096266 AACCCCAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.40, G:0.20, T:0.40
Consensus pattern (5 bp):
CTGTC
Found at i:81096795 original size:18 final size:18
Alignment explanation
Indices: 81096758--81096795 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
81096748 TATGACTATT
*
81096758 AGGTATTTTTACCGATTA
1 AGGTATTTTTACCGAGTA
*
81096776 AGGTATTTTTATCGAGTA
1 AGGTATTTTTACCGAGTA
81096794 AG
1 AG
81096796 TCCTTTTACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (18 bp):
AGGTATTTTTACCGAGTA
Found at i:81110736 original size:43 final size:43
Alignment explanation
Indices: 81110622--81110780 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
81110612 GATTAACGAG
* * * * *
81110622 ATGTGATTATGCGTAAGACCATGTTTGGGACATTGGAATCATT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTT
81110665 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTT
* * * * *
81110708 ATTTGATTTCGTGTAAGACCATAG-CTGGG-CTATCGGCACCGAT
1 ATGTGATTACGTGTAAGACCAT-GTCTGGGAC-ATTGGCATCGTT
* * *
81110751 ATGTGATAACATGTAAGACCATATCTGGGA
1 ATGTGATTACGTGTAAGACCATGTCTGGGA
81110781 TATGACATTG
Statistics
Matches: 97, Mismatches: 15, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
42 1 0.01
43 95 0.98
44 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTT
Found at i:81115364 original size:40 final size:39
Alignment explanation
Indices: 81115298--81115448 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
81115288 AAATTGAATG
* * *
81115298 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
81115337 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
81115377 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
81115417 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
81115449 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:81115462 original size:40 final size:39
Alignment explanation
Indices: 81115335--81115464 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
81115325 ATGCTGGAAA
* *
81115335 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
81115375 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
81115415 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
81115455 TTATATCCGG
1 TTATATCCGG
81115465 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:81116884 original size:40 final size:40
Alignment explanation
Indices: 81116829--81116908 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
81116819 GGTGTTACAA
81116829 TGCTTAACATCAATAACCACATACAAGTTCACAAACCTTT
1 TGCTTAACATCAATAACCACATACAAGTTCACAAACCTTT
81116869 TGCTTAACATCAATAACCACATACAAGTTCACAAACCTTT
1 TGCTTAACATCAATAACCACATACAAGTTCACAAACCTTT
81116909 CTCAATGAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.40, C:0.28, G:0.05, T:0.28
Consensus pattern (40 bp):
TGCTTAACATCAATAACCACATACAAGTTCACAAACCTTT
Found at i:81124781 original size:67 final size:64
Alignment explanation
Indices: 81124686--81124828 Score: 171
Period size: 64 Copynumber: 2.2 Consensus size: 64
81124676 CCACCTATGT
* * * * * * *
81124686 GACCTAGCTA-GTTTATCTCGTAGGTCTCTTGTCTACATGGTGTCCTTCACCTGGAATCACACAT
1 GACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTG---TACACATAGAATCACACAT
81124750 GC
63 GC
* *
81124752 GACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGC
1 GACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATAGAATCACACATGC
81124816 GACCTAGCTACAT
1 GACCTAGCTACAT
81124829 CATAATGTCT
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
64 29 0.43
66 10 0.15
67 28 0.42
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.31
Consensus pattern (64 bp):
GACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATAGAATCACACATGC
Found at i:81129981 original size:40 final size:39
Alignment explanation
Indices: 81129936--81130083 Score: 163
Period size: 40 Copynumber: 3.7 Consensus size: 39
81129926 TAATCCACAA
* * *** *
81129936 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTC
81129976 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
81130016 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* *
81130056 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCA-CAATGCCTTCGGGTCTTAGCCCGG
81130084 GTATCATTCA
Statistics
Matches: 95, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
40 92 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:81133359 original size:70 final size:71
Alignment explanation
Indices: 81133208--81133370 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
81133198 GAGATGTATC
81133208 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81133273 AGGACA
66 AGGACA
81133279 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
81133343 CGGACA
66 AGGACA
81133349 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
81133371 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:81143531 original size:70 final size:71
Alignment explanation
Indices: 81143381--81143543 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
81143371 GAGATGTATC
81143381 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81143446 AGGACA
66 AGGACA
81143452 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81143516 AGGACA
66 AGGACA
81143522 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
81143544 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:81150989 original size:41 final size:41
Alignment explanation
Indices: 81150944--81151061 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
81150934 TGAAAGATAA
81150944 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
81150985 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81151015 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81151056 ATGTAG
1 ATGTAG
81151062 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:81151000 original size:71 final size:71
Alignment explanation
Indices: 81150912--81151075 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
81150902 GAGATGTATC
81150912 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81150977 AGGACA
66 AGGACA
81150983 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81151048 AGGACA
66 AGGACA
81151054 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
81151076 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:81165152 original size:40 final size:40
Alignment explanation
Indices: 81165086--81165229 Score: 121
Period size: 40 Copynumber: 3.6 Consensus size: 40
81165076 AAATTGAATG
* ** *
81165086 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGAAACT
* * ***
81165125 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGAAACT
* * ** *
81165165 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCAAGAAACT
* *
81165205 CTATCCGGGCTAAGACCCAAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
81165230 TTTGTGCACA
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
39 16 0.19
40 70 0.81
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGAAACT
Found at i:81165251 original size:40 final size:39
Alignment explanation
Indices: 81165123--81165252 Score: 143
Period size: 40 Copynumber: 3.3 Consensus size: 39
81165113 ATGCTGGAAA
* *
81165123 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
81165163 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
* *
81165203 TTCTATCCGGGCTAAGACCCAAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
*
81165243 TTAAATCCGG
1 TTATATCCGG
81165253 TTATATTCCG
Statistics
Matches: 72, Mismatches: 16, Indels: 4
0.78 0.17 0.04
Matches are distributed among these distances:
39 1 0.01
40 70 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:81173623 original size:28 final size:29
Alignment explanation
Indices: 81173564--81173628 Score: 73
Period size: 28 Copynumber: 2.3 Consensus size: 29
81173554 TTCATATTTA
81173564 TTTTA-CAATTTAACCCCTTAAATTGCAC
1 TTTTATCAATTTAACCCCTTAAATTGCAC
* * *
81173592 TTTTCTCAATTTAA-TCCTT-AATTGACAT
1 TTTTATCAATTTAACCCCTTAAATTG-CAC
81173620 TTTTATCAA
1 TTTTATCAA
81173629 AAATCACTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
27 5 0.16
28 18 0.58
29 8 0.26
ACGTcount: A:0.31, C:0.20, G:0.03, T:0.46
Consensus pattern (29 bp):
TTTTATCAATTTAACCCCTTAAATTGCAC
Found at i:81173710 original size:23 final size:22
Alignment explanation
Indices: 81173684--81173737 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
81173674 TTCATCAATA
* **
81173684 ATCATTCAAAAGCTCAGGAATTC
1 ATCAATCAAAA-CTCACAAATTC
*
81173707 ATCAATGAAAACTCACAAATTC
1 ATCAATCAAAACTCACAAATTC
81173729 ATCAA-CAAA
1 ATCAATCAAA
81173738 TTCAGAAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 3 0.12
22 14 0.54
23 9 0.35
ACGTcount: A:0.48, C:0.22, G:0.07, T:0.22
Consensus pattern (22 bp):
ATCAATCAAAACTCACAAATTC
Found at i:81175450 original size:24 final size:22
Alignment explanation
Indices: 81175408--81175451 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
81175398 TTAAAGTGTA
81175408 AATATGAAAAATTTGAAGGGCT
1 AATATGAAAAATTTGAAGGGCT
*
81175430 AATAGTGAAAATATTTTAAGGG
1 AATA-TGAAAA-ATTTGAAGGG
81175452 TTGAAGGATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 6 0.32
24 9 0.47
ACGTcount: A:0.45, C:0.02, G:0.23, T:0.30
Consensus pattern (22 bp):
AATATGAAAAATTTGAAGGGCT
Found at i:81175729 original size:11 final size:11
Alignment explanation
Indices: 81175713--81175737 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
81175703 ATATGATATT
81175713 TTATTATTTTA
1 TTATTATTTTA
81175724 TTATTATTTTA
1 TTATTATTTTA
81175735 TTA
1 TTA
81175738 GTATATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:81178597 original size:46 final size:46
Alignment explanation
Indices: 81178535--81178703 Score: 230
Period size: 47 Copynumber: 3.6 Consensus size: 46
81178525 ATATTTGAAT
* * *
81178535 TCCGAACTAGTTGAGTTGAGTCCGAGTTTGTGAGATATATCAGCCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATATATCAGGCA
* *
81178581 TCCAAACTCGTTGAGTTGAGTCCAAGTTCGTGAGATATAATCAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATAT-ATCAGGCA
* ** * *
81178628 TCCGAACTCATTGAGTTGAGTTTGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATATATC-AGGCA
81178675 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
81178704 ACTTATGGGA
Statistics
Matches: 106, Mismatches: 15, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
46 36 0.34
47 70 0.66
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATATATCAGGCA
Found at i:81187867 original size:41 final size:40
Alignment explanation
Indices: 81187816--81187898 Score: 121
Period size: 41 Copynumber: 2.0 Consensus size: 40
81187806 CATTCCATCA
* * *
81187816 CATATCGATGCCACTGTCCCAGACAGGGTCTTACACGTAT
1 CATATCGATGCCAATGTCCCAGACAGGATCTTACACGAAT
*
81187856 CATATACGATGCCAATGTCCCAGACATGATCTTACACGAAT
1 CATAT-CGATGCCAATGTCCCAGACAGGATCTTACACGAAT
81187897 CA
1 CA
81187899 CACATTAGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
40 5 0.13
41 33 0.87
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (40 bp):
CATATCGATGCCAATGTCCCAGACAGGATCTTACACGAAT
Found at i:81199478 original size:22 final size:23
Alignment explanation
Indices: 81199452--81199499 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
81199442 TATAGGCTAG
*
81199452 TTTTGATATG-TTTG-GTTTTGAA
1 TTTTG-TATGTTTTGAGTTATGAA
81199474 TTTTGTATGTTTTGAGTTATGAA
1 TTTTGTATGTTTTGAGTTATGAA
81199497 TTT
1 TTT
81199500 AGCCATGTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 4 0.17
22 9 0.39
23 10 0.43
ACGTcount: A:0.19, C:0.00, G:0.21, T:0.60
Consensus pattern (23 bp):
TTTTGTATGTTTTGAGTTATGAA
Found at i:81200874 original size:43 final size:43
Alignment explanation
Indices: 81200781--81200935 Score: 127
Period size: 43 Copynumber: 3.6 Consensus size: 43
81200771 GGTCACTAAG
* * * * * ** *
81200781 ATGTAATTACACGTACGACCATGTCTGGGACATCGGGGTTG-T
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGAT
*
81200823 ATTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATC-ATT
1 A-TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGA-T
*** *
81200867 AAT-TGATTTTGTGTAAGACCCTATCTGGGACATTGGCATCGAT
1 -ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGAT
* *
81200910 ATGTGATAACATATAAGACCATATCT
1 ATGTGATTACATGTAAGACCATATCT
81200936 AGGATATGGC
Statistics
Matches: 89, Mismatches: 18, Indels: 11
0.75 0.15 0.09
Matches are distributed among these distances:
42 3 0.03
43 82 0.92
44 3 0.03
45 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGAT
Found at i:81203086 original size:28 final size:29
Alignment explanation
Indices: 81203022--81203123 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
81203012 GTGACGAGAT
* * *
81203022 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
81203051 TGGCACTAAGTGTGCGA-TTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
81203079 TGGCACTATGTGTGCGGGCTT-GAATCACA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
81203108 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81203124 TGATTGAGTA
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
28 25 0.42
29 35 0.58
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:81208895 original size:40 final size:40
Alignment explanation
Indices: 81208840--81208963 Score: 248
Period size: 40 Copynumber: 3.1 Consensus size: 40
81208830 AACATTGGAA
81208840 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
81208880 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
81208920 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
81208960 ATAT
1 ATAT
81208964 CGTGCGAAGT
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 84 1.00
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:81208968 original size:15 final size:16
Alignment explanation
Indices: 81208948--81208979 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
81208938 CCGAAGGCAT
81208948 TCGTGCG-AGTTGATA
1 TCGTGCGAAGTTGATA
81208963 TCGTGCGAAGTTGATA
1 TCGTGCGAAGTTGATA
81208979 T
1 T
81208980 ATCCGGGCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.22, C:0.12, G:0.31, T:0.34
Consensus pattern (16 bp):
TCGTGCGAAGTTGATA
Found at i:81209039 original size:96 final size:95
Alignment explanation
Indices: 81208868--81209053 Score: 266
Period size: 96 Copynumber: 1.9 Consensus size: 95
81208858 CCGAAGGCAT
* * * *
81208868 TCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCT
1 TCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTCACAAATCCGGGCT
*
81208933 AAGACCCGAAGGCATTCGTGCGAGTTGATA
66 AAGACCCGAAGGCAATCGTGCGAGTTGATA
* *
81208963 TCGTGCGAAGTTGATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TCACCAAATCCGGG
1 TCGTGCG-AGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTCA-CAAATCCGGG
* *
81209027 TTATGACCCGAAGGCAATCGTGCGAGT
64 CTAAGACCCGAAGGCAATCGTGCGAGT
81209054 CGCTATATCC
Statistics
Matches: 80, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
95 9 0.11
96 71 0.89
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (95 bp):
TCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTCACAAATCCGGGCT
AAGACCCGAAGGCAATCGTGCGAGTTGATA
Found at i:81209064 original size:40 final size:40
Alignment explanation
Indices: 81208962--81209065 Score: 100
Period size: 40 Copynumber: 2.6 Consensus size: 40
81208952 GCGAGTTGAT
* * *
81208962 ATCGTGCGAAGTTGATATATCCGGGCTAAGACCCGAAGGCC
1 ATCGTGCG-AGTCGCTATATCCGGGCTAAGACCCGAAGGCA
* * * * * * * *
81209003 TTTGTGCAAGTCACCAAATCCGGGTTATGACCCGAAGGCA
1 ATCGTGCGAGTCGCTATATCCGGGCTAAGACCCGAAGGCA
81209043 ATCGTGCGAGTCGCTATATCCGG
1 ATCGTGCGAGTCGCTATATCCGG
81209066 TTAAATCCCG
Statistics
Matches: 46, Mismatches: 17, Indels: 1
0.72 0.27 0.02
Matches are distributed among these distances:
40 41 0.89
41 5 0.11
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATCGTGCGAGTCGCTATATCCGGGCTAAGACCCGAAGGCA
Found at i:81217046 original size:40 final size:40
Alignment explanation
Indices: 81216991--81217240 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
81216981 AACATTGGAA
81216991 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
81217031 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
81217071 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
81217111 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
81217151 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
81217190 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
81217231 CTATATCCGG
1 ATATATCCGG
81217241 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:81229938 original size:25 final size:25
Alignment explanation
Indices: 81229910--81229957 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
81229900 GTGGCACAAT
*
81229910 CCAAACT-TACCCGATATTTAACTAG
1 CCAAACTATACCCAATA-TTAACTAG
*
81229935 CCAATCTATACCCAATATTAACT
1 CCAAACTATACCCAATATTAACT
81229958 CGAATTATCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 12 0.60
26 8 0.40
ACGTcount: A:0.38, C:0.29, G:0.04, T:0.29
Consensus pattern (25 bp):
CCAAACTATACCCAATATTAACTAG
Found at i:81232341 original size:34 final size:34
Alignment explanation
Indices: 81232298--81232377 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 34
81232288 TTAGCCCTTT
81232298 TTTCAGTAACAGTCG-CAGTCAGGGCCTGAGCCCA
1 TTTCAGTAACAGT-GACAGTCAGGGCCTGAGCCCA
** *
81232332 TTTCAGTAACAGTGACAGTCTTGGCCTGAGCCCT
1 TTTCAGTAACAGTGACAGTCAGGGCCTGAGCCCA
81232366 TTTCAGT-ACAGT
1 TTTCAGTAACAGT
81232378 TTGCAAAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
33 6 0.14
34 36 0.86
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.28
Consensus pattern (34 bp):
TTTCAGTAACAGTGACAGTCAGGGCCTGAGCCCA
Found at i:81237387 original size:93 final size:93
Alignment explanation
Indices: 81237278--81237449 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
81237268 CACCCATAAG
* * * *
81237278 CGAACTCGGACTCAACTCAATGAGGTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGGTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
81237343 ACGAGCTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCGGATGCCTAGTTACATTTCA
*
81237371 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGGTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
81237436 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
81237450 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGGTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:81237446 original size:46 final size:46
Alignment explanation
Indices: 81237271--81237446 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
81237261 TGTAACCCAC
* * * *
81237271 CCATAAGCGAACTCGGACTCAACTCAATGAGGTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
81237317 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
81237367 --TTCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
81237410 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
81237447 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.58
47 27 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:81237465 original size:46 final size:46
Alignment explanation
Indices: 81237320--81237458 Score: 117
Period size: 47 Copynumber: 3.0 Consensus size: 46
81237310 TTCGCATCCA
* *
81237320 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTTA-CATT
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * * *
81237368 TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
81237413 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
81237459 CTAGTGACAT
Statistics
Matches: 72, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 27 0.38
47 28 0.39
48 2 0.03
49 4 0.06
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:81245453 original size:109 final size:109
Alignment explanation
Indices: 81245257--81245476 Score: 413
Period size: 109 Copynumber: 2.0 Consensus size: 109
81245247 CATAAGCTAC
81245257 AACTCGACCTTCTTGCATCAACACACAACCCAGCCCAAGTAAGGATGCATCACTGTAAATGACAA
1 AACTCGACCTTCTTGCATCAACACACAACCCAGCCCAAGTAAGGATGCATCACTGTAAATGACAA
*
81245322 CTCTTTACCAGATTCGGGTTGCACTAGCACTGGAGCTTCAGTTA
66 CTCTTTACCAGATTCGGGTTGCACTAGCACTGAAGCTTCAGTTA
*
81245366 AACTTGACCTTCTTGCATCAACACACAACCCAGCCCAAGTAAGGATGCATCACTGTAAATGACAA
1 AACTCGACCTTCTTGCATCAACACACAACCCAGCCCAAGTAAGGATGCATCACTGTAAATGACAA
*
81245431 CTCTTTACCAGATTTGGGTTGCACTAGCACTGAAGCTTCAGTTA
66 CTCTTTACCAGATTCGGGTTGCACTAGCACTGAAGCTTCAGTTA
81245475 AA
1 AA
81245477 TAGGTTTTCA
Statistics
Matches: 108, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
109 108 1.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (109 bp):
AACTCGACCTTCTTGCATCAACACACAACCCAGCCCAAGTAAGGATGCATCACTGTAAATGACAA
CTCTTTACCAGATTCGGGTTGCACTAGCACTGAAGCTTCAGTTA
Found at i:81248668 original size:2 final size:2
Alignment explanation
Indices: 81248661--81248686 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
81248651 TGTATAGATT
81248661 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
81248687 ATTCATTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:81249425 original size:24 final size:24
Alignment explanation
Indices: 81249298--81249455 Score: 115
Period size: 24 Copynumber: 6.6 Consensus size: 24
81249288 ACCGATTTCA
* * *
81249298 CACACATAGTGCTAAAT-AAATTCG
1 CACACATAGTGC-CATTCAAATCCG
* *
81249322 CACACATAGTGCCATGCTACA-CCG
1 CACACATAGTGCCATTC-AAATCCG
* * *
81249346 CACACATAGTGCC-TTGAAGATTCA
1 CACACATAGTGCCATTCAA-ATCCG
* ** * * * *
81249370 CTCATGTATTGACATCCAAATCAG
1 CACACATAGTGCCATTCAAATCCG
*
81249394 CACACATAGTGCCATTCAATTCCG
1 CACACATAGTGCCATTCAAATCCG
81249418 CACACATAGTGCCATTCAAATCCG
1 CACACATAGTGCCATTCAAATCCG
*
81249442 CACACTTAGTGCCA
1 CACACATAGTGCCA
81249456 ATGTTGACCC
Statistics
Matches: 99, Mismatches: 30, Indels: 10
0.71 0.22 0.07
Matches are distributed among these distances:
22 1 0.01
23 3 0.03
24 90 0.91
25 5 0.05
ACGTcount: A:0.33, C:0.30, G:0.14, T:0.23
Consensus pattern (24 bp):
CACACATAGTGCCATTCAAATCCG
Found at i:81265774 original size:32 final size:32
Alignment explanation
Indices: 81265749--81265836 Score: 158
Period size: 32 Copynumber: 2.8 Consensus size: 32
81265739 ATTTGTGTAC
* *
81265749 ATACCTGTACCATATTGTACCAATTTCCGTAG
1 ATACCTGTACCATCTCGTACCAATTTCCGTAG
81265781 ATACCTGTACCATCTCGTACCAATTTCCGTAG
1 ATACCTGTACCATCTCGTACCAATTTCCGTAG
81265813 ATACCTGTACCATCTCGTACCAAT
1 ATACCTGTACCATCTCGTACCAAT
81265837 CTCATACTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 54 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (32 bp):
ATACCTGTACCATCTCGTACCAATTTCCGTAG
Found at i:81265956 original size:56 final size:55
Alignment explanation
Indices: 81265879--81266040 Score: 175
Period size: 56 Copynumber: 2.9 Consensus size: 55
81265869 TGAATATTCA
* ** * *
81265879 ATGTATCGCACACT-AGATGCCATACCCGATACCTTGCACACTAAGTGTCGTTCTGG
1 ATGTTTCGCACACTAAG-TGCCAT-CCCGATACCTCACACACTAAGTGCCATTCTGG
*
81265935 ATGTTTCGCACACTAAGTGCCATCCTCGTTACCTCACACACTAAGTGCCATTCTGG
1 ATGTTTCGCACACTAAGTGCCATCC-CGATACCTCACACACTAAGTGCCATTCTGG
* * **
81265991 ATGTATT-GCACACTAAGTGCCATCCCCGATACTTCGCACGTTAAGTGCCA
1 ATGT-TTCGCACACTAAGTGCCAT-CCCGATACCTCACACACTAAGTGCCA
81266041 CATATAATTA
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
55 2 0.02
56 83 0.91
57 6 0.07
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (55 bp):
ATGTTTCGCACACTAAGTGCCATCCCGATACCTCACACACTAAGTGCCATTCTGG
Found at i:81266029 original size:28 final size:28
Alignment explanation
Indices: 81265884--81266040 Score: 108
Period size: 28 Copynumber: 5.6 Consensus size: 28
81265874 ATTCAATGTA
81265884 TCGCACACT-AGATGCCATACC-CGATACCT
1 TCGCACACTAAG-TGCCAT-CCTCGATA-CT
* * * * **
81265913 T-GCACACTAAGTGTCGTTCTGGATGTT
1 TCGCACACTAAGTGCCATCCTCGATACT
* *
81265940 TCGCACACTAAGTGCCATCCTCGTTACC
1 TCGCACACTAAGTGCCATCCTCGATACT
* * *
81265968 TCACACACTAAGTGCCATTCTGGATGTA-T
1 TCGCACACTAAGTGCCATCCTCGA--TACT
*
81265997 T-GCACACTAAGTGCCATCCCCGATACT
1 TCGCACACTAAGTGCCATCCTCGATACT
**
81266024 TCGCACGTTAAGTGCCA
1 TCGCACACTAAGTGCCA
81266041 CATATAATTA
Statistics
Matches: 96, Mismatches: 25, Indels: 15
0.71 0.18 0.11
Matches are distributed among these distances:
26 2 0.02
27 5 0.05
28 83 0.86
29 4 0.04
30 2 0.02
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (28 bp):
TCGCACACTAAGTGCCATCCTCGATACT
Found at i:81272605 original size:56 final size:56
Alignment explanation
Indices: 81272519--81272631 Score: 199
Period size: 56 Copynumber: 2.0 Consensus size: 56
81272509 AAAAACGGGG
*
81272519 TTTGGGAATACTTACTATTAAGCTTGGAAAGCTTGAAACCCTAGCTATAGAAACCC
1 TTTGGGAATACTTACTATTAAGCTTGGAAAGCTTGAAACCCTAACTATAGAAACCC
* *
81272575 TTTGGGAATACTTACTATTGAGTTTGGAAAGCTTGAAACCCTAACTATAGAAACCC
1 TTTGGGAATACTTACTATTAAGCTTGGAAAGCTTGAAACCCTAACTATAGAAACCC
81272631 T
1 T
81272632 AGAAATTTCG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.30
Consensus pattern (56 bp):
TTTGGGAATACTTACTATTAAGCTTGGAAAGCTTGAAACCCTAACTATAGAAACCC
Found at i:81277036 original size:28 final size:28
Alignment explanation
Indices: 81276990--81277058 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
81276980 TTTAAAACCC
*
81276990 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
81277017 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
81277045 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
81277059 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:81278911 original size:19 final size:18
Alignment explanation
Indices: 81278874--81278917 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
81278864 ATACATACAG
81278874 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
81278891 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
81278910 TACTAATT
1 TAATAATT
81278918 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:81285226 original size:20 final size:20
Alignment explanation
Indices: 81285201--81285239 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
81285191 GAGGCAAAGC
*
81285201 ACACGCCCGTGTGGTTAGGA
1 ACACGCCCGTGTGCTTAGGA
81285221 ACACGCCCGTGTGCTTAGG
1 ACACGCCCGTGTGCTTAGG
81285240 GACATGCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.21
Consensus pattern (20 bp):
ACACGCCCGTGTGCTTAGGA
Found at i:81285354 original size:13 final size:13
Alignment explanation
Indices: 81285333--81285363 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
81285323 CACACACCCA
81285333 TGTCCATGGCCCG
1 TGTCCATGGCCCG
*
81285346 TGTCTATGGCCCG
1 TGTCCATGGCCCG
81285359 TGTCC
1 TGTCC
81285364 TTCACACGGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.06, C:0.35, G:0.29, T:0.29
Consensus pattern (13 bp):
TGTCCATGGCCCG
Found at i:81292735 original size:13 final size:13
Alignment explanation
Indices: 81292717--81292742 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81292707 GTTGTAAAAC
81292717 TCATGATACCCGA
1 TCATGATACCCGA
81292730 TCATGATACCCGA
1 TCATGATACCCGA
81292743 GTGGAAATGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.23
Consensus pattern (13 bp):
TCATGATACCCGA
Found at i:81303418 original size:29 final size:29
Alignment explanation
Indices: 81303356--81303427 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 29
81303346 GTGACGAGAT
* * *
81303356 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
81303385 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
*
81303414 TGGCACTATGTGTG
1 TGGCACTAAGTGTG
81303428 TTGTAACACC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.21, C:0.15, G:0.33, T:0.31
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Done.