Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 282 of 444
Found at i:81577946 original size:7 final size:7
Alignment explanation
Indices: 81577934--81577958 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
81577924 GTCTTTCCTA
81577934 TTTTATT
1 TTTTATT
81577941 TTTTATT
1 TTTTATT
81577948 TTTTATT
1 TTTTATT
81577955 TTTT
1 TTTT
81577959 TTTACATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTATT
Found at i:81579444 original size:5 final size:5
Alignment explanation
Indices: 81579434--81579458 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
81579424 TGTATTGACG
81579434 TGTTT TGTTT TGTTT TGTTT TGTTT
1 TGTTT TGTTT TGTTT TGTTT TGTTT
81579459 ATGATTACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.20, T:0.80
Consensus pattern (5 bp):
TGTTT
Found at i:81583537 original size:5 final size:5
Alignment explanation
Indices: 81583519--81583572 Score: 62
Period size: 5 Copynumber: 11.2 Consensus size: 5
81583509 TTACTCTTTT
81583519 AAAA- AAAAG AAAAAG AAAAG AAGAA- AAAA- AAAAG AAAAG AAAAG AAAA-
1 AAAAG AAAAG -AAAAG AAAAG AA-AAG AAAAG AAAAG AAAAG AAAAG AAAAG
81583567 AAAAG A
1 AAAAG A
81583573 GGCCAAGGCG
Statistics
Matches: 45, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
4 14 0.31
5 24 0.53
6 7 0.16
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:81583539 original size:11 final size:11
Alignment explanation
Indices: 81583519--81583567 Score: 55
Period size: 12 Copynumber: 4.4 Consensus size: 11
81583509 TTACTCTTTT
81583519 AAAA-AAAAGA
1 AAAAGAAAAGA
81583529 AAAAGAAAAGA
1 AAAAGAAAAGA
* *
81583540 AGAAAAAAAAAA
1 A-AAAGAAAAGA
81583552 GAAAAGAAAAGA
1 -AAAAGAAAAGA
81583564 AAAA
1 AAAA
81583568 AAAGAGGCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
10 4 0.12
11 11 0.34
12 16 0.50
13 1 0.03
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAGA
Found at i:81583542 original size:14 final size:13
Alignment explanation
Indices: 81583529--81583568 Score: 59
Period size: 12 Copynumber: 3.3 Consensus size: 13
81583519 AAAAAAAAGA
81583529 AAAAGAAAAGAAG
1 AAAAGAAAAGAAG
81583542 AAAA-AAAA-AAG
1 AAAAGAAAAGAAG
81583553 AAAAGAAAAGAA-
1 AAAAGAAAAGAAG
81583565 AAAA
1 AAAA
81583569 AAGAGGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 7 0.28
12 12 0.48
13 6 0.24
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAGAAG
Found at i:81583550 original size:19 final size:18
Alignment explanation
Indices: 81583520--81583572 Score: 79
Period size: 19 Copynumber: 2.8 Consensus size: 18
81583510 TACTCTTTTA
81583520 AAAAAAAGAAAAAGAAAAG
1 AAAAAAA-AAAAAGAAAAG
81583539 AAGAAAAAAAAAAGAAAAG
1 AA-AAAAAAAAAAGAAAAG
81583558 AAAAGAAAAAAAAGA
1 AAAA-AAAAAAAAGA
81583573 GGCCAAGGCG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
18 2 0.06
19 25 0.78
20 5 0.16
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAAAAGAAAAG
Found at i:81583556 original size:24 final size:24
Alignment explanation
Indices: 81583519--81583570 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
81583509 TTACTCTTTT
81583519 AAAAAAAAGAAAAAGAAAAGAAGAA
1 AAAAAAAAGAAAAAGAAAAGAA-AA
81583544 AAAAAAAAG-AAAAGAAAAGAAAA
1 AAAAAAAAGAAAAAGAAAAGAAAA
81583567 AAAA
1 AAAA
81583571 GAGGCCAAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 6 0.22
24 12 0.44
25 9 0.33
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (24 bp):
AAAAAAAAGAAAAAGAAAAGAAAA
Found at i:81584080 original size:49 final size:48
Alignment explanation
Indices: 81584008--81584100 Score: 141
Period size: 49 Copynumber: 1.9 Consensus size: 48
81583998 GTTTGCTATC
* * *
81584008 TTTGATTAATTTATTTGTTTCGAGCTATGCTCTCAATCAATTTCTTTT
1 TTTGATTAACTTATTCGTCTCGAGCTATGCTCTCAATCAATTTCTTTT
*
81584056 TTTGTATTAACTTATTCGTCTCGAGTTATGCTCTCAATCAATTTC
1 TTTG-ATTAACTTATTCGTCTCGAGCTATGCTCTCAATCAATTTC
81584101 CTTCTTGTCC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
48 4 0.10
49 36 0.90
ACGTcount: A:0.22, C:0.17, G:0.11, T:0.51
Consensus pattern (48 bp):
TTTGATTAACTTATTCGTCTCGAGCTATGCTCTCAATCAATTTCTTTT
Found at i:81584967 original size:181 final size:181
Alignment explanation
Indices: 81584685--81585270 Score: 861
Period size: 181 Copynumber: 3.2 Consensus size: 181
81584675 TGAAGCCACT
* * * * *
81584685 AAACCTTATCTCCTTGAAATAGCAATAGAGTAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
1 AAACCTTATCTCCCTGAAATAACAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
* * * *
81584750 CAGTGGAGCAAACTGGAA-ATCA-CGAATCACATTTCCCTAAAGTTGCAGTGGAATAGATTGAAG
66 CAGTGGAGCAGA-TTGAAGAT-AGCGAATCTCATTTCCCTAAAGTTGCAGTGGAACAGATTGAAG
*
81584813 CTATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCATAGC
129 CTATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGC
* * *
81584866 AAACCTTATCTCCCTGAAATAACAGTGGAGTAGGTTGAAGTTAAAGTCTAATCTCCCTGAAGTTA
1 AAACCTTATCTCCCTGAAATAACAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
* * * * *
81584931 CAATGGAGCAGATTGAAGATAGCAAATCTGATTTCCCTAAAGTTGTAGTGAAACAGATTGAAGCT
66 CAGTGGAGCAGATTGAAGATAGCGAATCTCATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCT
* *
81584996 ATAAATAAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGA
131 ATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGC
* *
81585047 AAACCTTATCTCCCTGAAATAACAGTGGAGCAAGTTTAAGTTAAAGTCTTATCTCCCTGAAGTTG
1 AAACCTTATCTCCCTGAAATAACAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
* * * * *
81585112 TAGTGGAGTAGACTAAAGATAGCGAATCTCATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCT
66 CAGTGGAGCAGATTGAAGATAGCGAATCTCATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCT
*
81585177 ATAAATAAACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCATAGC
131 ATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGC
* **
81585228 AAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA
1 AAACCTTATCTCCCTGAAATAACAGTGGAGCAGGTTGAAGTTA
81585271 CAAATCCTAT
Statistics
Matches: 362, Mismatches: 41, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
180 5 0.01
181 357 0.99
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (181 bp):
AAACCTTATCTCCCTGAAATAACAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
CAGTGGAGCAGATTGAAGATAGCGAATCTCATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCT
ATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGC
Found at i:81587161 original size:15 final size:15
Alignment explanation
Indices: 81587137--81587290 Score: 114
Period size: 15 Copynumber: 9.7 Consensus size: 15
81587127 TTGGTATTTT
81587137 ATTATCTATTATTATC
1 ATTAT-TATTATTATC
*
81587153 ATTATTATTATTTGTTC
1 ATTATTATTA-TT-ATC
*
81587170 ATCTATTTATTTATTACCC
1 AT-TA-TTA-TTATTA-TC
*
81587189 ATTTTGTACTTATATAT-
1 ATTAT-TA-TTAT-TATC
* *
81587206 ATTATTCTGATT-TC
1 ATTATTATTATTATC
*
81587220 TATTATTATTATTATT
1 -ATTATTATTATTATC
*
81587236 ATTATTATTATTATT
1 ATTATTATTATTATC
*
81587251 ATTATTATTATTATT
1 ATTATTATTATTATC
*
81587266 ATTATTATTATTATT
1 ATTATTATTATTATC
81587281 ATTATTATTA
1 ATTATTATTA
81587291 CAAATTGTAC
Statistics
Matches: 115, Mismatches: 12, Indels: 23
0.77 0.08 0.15
Matches are distributed among these distances:
13 1 0.01
14 1 0.01
15 73 0.63
16 9 0.08
17 9 0.08
18 9 0.08
19 10 0.09
20 3 0.03
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (15 bp):
ATTATTATTATTATC
Found at i:81587226 original size:3 final size:3
Alignment explanation
Indices: 81587220--81587290 Score: 142
Period size: 3 Copynumber: 23.7 Consensus size: 3
81587210 TTCTGATTTC
81587220 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
81587268 TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TA
81587291 CAAATTGTAC
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 68 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:81587463 original size:7 final size:7
Alignment explanation
Indices: 81587451--81587489 Score: 78
Period size: 7 Copynumber: 5.6 Consensus size: 7
81587441 GTCTTTGCTA
81587451 TTTTATT
1 TTTTATT
81587458 TTTTATT
1 TTTTATT
81587465 TTTTATT
1 TTTTATT
81587472 TTTTATT
1 TTTTATT
81587479 TTTTATT
1 TTTTATT
81587486 TTTT
1 TTTT
81587490 TTACATTTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTATT
Found at i:81587911 original size:28 final size:28
Alignment explanation
Indices: 81587880--81587935 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
81587870 TTCATAAAAG
*
81587880 AAGAATTTTTTAGGCAATGTTCTGCATT
1 AAGAATTTTTTAGGCAATGTTCGGCATT
81587908 AAGAATTTTTTAGGCAATGTTCGGCATT
1 AAGAATTTTTTAGGCAATGTTCGGCATT
81587936 TGTGTAACAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.41
Consensus pattern (28 bp):
AAGAATTTTTTAGGCAATGTTCGGCATT
Found at i:81588225 original size:22 final size:22
Alignment explanation
Indices: 81588167--81588226 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
81588157 CACTTGTCGC
* *
81588167 AGGGGC-ACACGCCCATCTGGG
1 AGGGGCAACACGCCCGTCTGGA
*
81588188 AGGGGTAACACGCCCGTGC-GGA
1 AGGGGCAACACGCCCGT-CTGGA
81588210 AGGGGCAACACGCCCGT
1 AGGGGCAACACGCCCGT
81588227 ACGAGCATTC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 5 0.15
22 27 0.82
23 1 0.03
ACGTcount: A:0.22, C:0.32, G:0.38, T:0.08
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTCTGGA
Found at i:81589393 original size:47 final size:49
Alignment explanation
Indices: 81589322--81589590 Score: 226
Period size: 47 Copynumber: 5.8 Consensus size: 49
81589312 GGTAAGGTGT
*
81589322 CGATGCCATGTCCTAGACACGGTCTTACACTGGCTCAT-ATCTC-AAGC
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCATCTCGAAGC
* * * *
81589369 CAATGCCATATCCTAGACATGGTCTTACACTGACT-ATCATCTCGTAGC
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCATCTCGAAGC
* * * * *
81589417 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTA-CGTCTCGAGGC
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCATCTCGAAGC
* * * *
81589463 CGATG-CATGTCCAAG-CAT-GTCTTACACTAGC-CCTCGTCTC-AATGC
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCATCTCGAA-GC
* * **
81589508 CGATGCGATGTCCTAGACATGGTCTTACACTGGCTC-TCATAAT-GTGGC
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCAT-CTCGAAGC
* * *
81589556 CGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCA
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCA
81589591 CACACGAATG
Statistics
Matches: 182, Mismatches: 28, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
44 1 0.01
45 29 0.16
46 58 0.32
47 63 0.35
48 29 0.16
49 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCATCTCGAAGC
Found at i:81589458 original size:46 final size:46
Alignment explanation
Indices: 81589322--81589588 Score: 192
Period size: 46 Copynumber: 5.7 Consensus size: 46
81589312 GGTAAGGTGT
* * * * *
81589322 CGATGCCATGTCCTAGACACGGTCTTACACTGGC-TCATATC-TCAAGC
1 CGATG-CATGTCCCAGACA-TGTCTTACACTAGCTTCATCTCGT-AGGC
* * *
81589369 CAATGCCATATCCTAGACATGGTCTTACACT-GACTATCATCTCGTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAG-CT-TCATCTCGTAGGC
*
81589417 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCG-AGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTT-CATCTCGTAGGC
* * * * *
81589463 CGATGCATGTCCAAG-CATGTCTTACACTAGCCCTCGTCTC-AATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAG-CTTCATCTCGTAGGC
* * *
81589508 CGATGCGATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GT-GGC
1 CGATGC-ATGTCCCAGACAT-GTCTTACACTAGCT-TCAT-CTCGTAGGC
*
81589556 CGATGCATGTCCCAAACATGTCTTACACTAGCT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT
81589589 CACACACGAA
Statistics
Matches: 183, Mismatches: 21, Indels: 33
0.77 0.09 0.14
Matches are distributed among these distances:
45 32 0.17
46 58 0.32
47 56 0.31
48 28 0.15
49 8 0.04
50 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTCATCTCGTAGGC
Found at i:81597052 original size:46 final size:45
Alignment explanation
Indices: 81596916--81597133 Score: 206
Period size: 47 Copynumber: 4.6 Consensus size: 45
81596906 GGGAAGGTAC
* * * *
81596916 CGATGCCATGTCCTAGACACAGTCTTACACTAACTCATATCTCAAGT
1 CGATG-CATGTCCTAGACA-TGTCTTACACTAGCTTACATCTCAAGT
* * * *
81596963 CGATGCCATGTCCCAGACATGGCCTTACACT-GATTATCATCTCGTAGT
1 CGATG-CATGTCCTAGACAT-GTCTTACACTAGCTTA-CATCTC-AAGT
* * * *
81597011 CGATGCATGTCCAAGACATGTCTTACACTGGCTTACATCTCGAGG
1 CGATGCATGTCCTAGACATGTCTTACACTAGCTTACATCTCAAGT
*
81597056 CTGATGCATGTCCTAGACATGTCTTACACTAGCTCT-CGTCTCAATGT
1 C-GATGCATGTCCTAGACATGTCTTACACTAGCT-TACATCTCAA-GT
81597103 CGATGCGATGTCCTAGACATGGTCTTACACT
1 CGATGC-ATGTCCTAGACAT-GTCTTACACT
81597134 GGCTCTCATA
Statistics
Matches: 144, Mismatches: 18, Indels: 17
0.80 0.10 0.09
Matches are distributed among these distances:
45 3 0.02
46 58 0.40
47 65 0.45
48 18 0.12
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (45 bp):
CGATGCATGTCCTAGACATGTCTTACACTAGCTTACATCTCAAGT
Found at i:81597168 original size:94 final size:92
Alignment explanation
Indices: 81597009--81597184 Score: 230
Period size: 94 Copynumber: 1.9 Consensus size: 92
81596999 TCATCTCGTA
* ** * *
81597009 GTCGATGCATGTCCAAGACATGTCTTACACTGGCTTACATCTCGAGGCTGATGCATGTCCTAGAC
1 GTCGATGCATGTCCAAGACATGTCTTACACTGGCTTACATATCGAGGCCAATGCACGTCCCAGAC
*
81597074 ATGTCTTACACTAGCTCTCGTCTCAAT
66 ATATCTTACACTAGCTCTCGTCTCAAT
* *
81597101 GTCGATGCGATGTCCTAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCAATGCACGTCCC
1 GTCGATGC-ATGTCCAAGACAT-GTCTTACACTGGCT-TACAT-ATCGAGGCCAATGCACGTCCC
81597164 AGACATATCTTACACTAGCTC
62 AGACATATCTTACACTAGCTC
81597185 ACACACGAAT
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
92 8 0.11
93 12 0.17
94 50 0.69
95 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (92 bp):
GTCGATGCATGTCCAAGACATGTCTTACACTGGCTTACATATCGAGGCCAATGCACGTCCCAGAC
ATATCTTACACTAGCTCTCGTCTCAAT
Found at i:81597175 original size:140 final size:141
Alignment explanation
Indices: 81596917--81597179 Score: 327
Period size: 140 Copynumber: 1.9 Consensus size: 141
81596907 GGAAGGTACC
81596917 GATGCCATGTCCTAGACACAGTCTTACACTAACTCATATCTCAAGTCGATGCCATGTCCCAGACA
1 GATGCCATGTCCTAGACACAGTCTTACACTAACTCATATCTCAAGTCGATGCCATGTCCCAGACA
* * * * * *
81596982 TGGCCTTACACTGATTATCATCTCGTAGTCGATGCATGTCCAAGACATGTCTTACACTGGCTTAC
66 TGGCCTTACACTGACTATCATATCGTAGCCAATGCACGTCCAAGACATATCTTACACTGGCTTAC
81597047 ATCTCGAGGCT
131 ATCTCGAGGCT
* * * * *
81597058 GATG-CATGTCCTAGACA-TGTCTTACACTAGCTC-TCGTCTCAATGTCGATGCGATGTCCTAGA
1 GATGCCATGTCCTAGACACAGTCTTACACTAACTCAT-ATCTCAA-GTCGATGCCATGTCCCAGA
* * * * *
81597120 CATGGTCTTACACTGGCTCTCATAAT-GTGGCCAATGCACGTCCCAGACATATCTTACACT
64 CATGGCCTTACACTGACTATCAT-ATCGTAGCCAATGCACGTCCAAGACATATCTTACACT
81597180 AGCTCACACA
Statistics
Matches: 103, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
138 1 0.01
139 20 0.19
140 77 0.75
141 5 0.05
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (141 bp):
GATGCCATGTCCTAGACACAGTCTTACACTAACTCATATCTCAAGTCGATGCCATGTCCCAGACA
TGGCCTTACACTGACTATCATATCGTAGCCAATGCACGTCCAAGACATATCTTACACTGGCTTAC
ATCTCGAGGCT
Found at i:81599865 original size:24 final size:25
Alignment explanation
Indices: 81599837--81599883 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
81599827 TAGTGTTCAT
* *
81599837 TTAACCGAATTGACC-AAATTAAAA
1 TTAACCAAATTAACCAAAATTAAAA
*
81599861 TTAACTAAATTAACCAAAATTAA
1 TTAACCAAATTAACCAAAATTAA
81599884 CCAAATTGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.53, C:0.15, G:0.04, T:0.28
Consensus pattern (25 bp):
TTAACCAAATTAACCAAAATTAAAA
Found at i:81605178 original size:5 final size:5
Alignment explanation
Indices: 81605168--81605200 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
81605158 ATGTGTGTTC
81605168 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
81605201 CACAATATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:81607386 original size:23 final size:22
Alignment explanation
Indices: 81607335--81607382 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
81607325 TAAAGTATTA
*
81607335 TAAATTTATATGTATTTTTTTG
1 TAAATTTATATCTATTTTTTTG
81607357 TAAATTTATAATCTA-TTTTTTG
1 TAAATTTAT-ATCTATTTTTTTG
81607379 TAAA
1 TAAA
81607383 ATTTGACTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.33, C:0.02, G:0.06, T:0.58
Consensus pattern (22 bp):
TAAATTTATATCTATTTTTTTG
Found at i:81608063 original size:24 final size:24
Alignment explanation
Indices: 81608036--81608081 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
81608026 AAGCGTTGAC
81608036 TCAATTGTTAAAGTCAAAAGCTAG
1 TCAATTGTTAAAGTCAAAAGCTAG
81608060 TCAATTGTTAAAGTCAAAAGCT
1 TCAATTGTTAAAGTCAAAAGCT
81608082 TTAGGTCTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.30
Consensus pattern (24 bp):
TCAATTGTTAAAGTCAAAAGCTAG
Found at i:81611136 original size:31 final size:31
Alignment explanation
Indices: 81611071--81611145 Score: 98
Period size: 31 Copynumber: 2.4 Consensus size: 31
81611061 AAAAAAACTT
* *
81611071 AATAGTCTAGTGACTTAAATAAAATATTTTG
1 AATAGTTTAGTGACTTAAATAAAATATTTCG
*
81611102 AATAGTTTAGTGACTTAAATGAAAA-CTTTCG
1 AATAGTTTAGTGACTTAAAT-AAAATATTTCG
*
81611133 AATAATTTAGTGA
1 AATAGTTTAGTGA
81611146 TCAAATTATA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
31 35 0.90
32 4 0.10
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.37
Consensus pattern (31 bp):
AATAGTTTAGTGACTTAAATAAAATATTTCG
Found at i:81612892 original size:2 final size:2
Alignment explanation
Indices: 81612885--81612912 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
81612875 CTATTGAGAA
81612885 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81612913 GGAATAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81613088 original size:17 final size:17
Alignment explanation
Indices: 81613066--81613111 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
81613056 GCACGATTCA
81613066 ATTTTTTATATTAAAAT
1 ATTTTTTATATTAAAAT
*
81613083 ATTTTTTA-AATAAAAT
1 ATTTTTTATATTAAAAT
*
81613099 ATTATTTTTTATT
1 ATT-TTTTATATT
81613112 TTTGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
16 10 0.42
17 12 0.50
18 2 0.08
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
ATTTTTTATATTAAAAT
Found at i:81613289 original size:23 final size:24
Alignment explanation
Indices: 81613262--81613306 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
81613252 AAAATCAAAT
*
81613262 GAGC-ACATACACAAAATTTAGCA
1 GAGCAACAGACACAAAATTTAGCA
81613285 GAGCAACAGACACAAAATTTAG
1 GAGCAACAGACACAAAATTTAG
81613307 TTGAACGGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.49, C:0.20, G:0.16, T:0.16
Consensus pattern (24 bp):
GAGCAACAGACACAAAATTTAGCA
Found at i:81614038 original size:132 final size:131
Alignment explanation
Indices: 81613795--81614432 Score: 852
Period size: 131 Copynumber: 4.9 Consensus size: 131
81613785 TACACTTTTG
* * * * * *
81613795 GCAACTCTTTGTATAAGGGTTGGGATAAGCATGCCTAAAGCAACGCTTAAATAAGAGTTGG-TGT
1 GCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTT
* * * *
81613859 TGTGTAGTCCTAAGACAACACTTTTGGGGCAACACTTTCCTAAGTGTTGGACTATACTATGCTTT
66 TGTGTAGTCCTAAGACAACACTTTTGTGGCGACACTTTCCTAAGTGTTGGA-TAAACTACGCTTT
81613924 CT
130 CT
* * * *
81613926 CCAACTATTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCCTGAATAAGAGTTGGCTTT
1 GCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTT
* * *
81613991 TGTGTAGTCATAAGATAACACTTTTGTGGCAACACTTTCCTAAGTGTTGGGATAAACTACGC--T
66 TGTGTAGTCCTAAGACAACACTTTTGTGGCGACACTTTCCTAAGTGTT-GGATAAACTACGCTTT
81614054 CT
130 CT
* * **
81614056 GGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGCATAAGAGTTGGAGT
1 -GCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTT
* * * * *
81614121 TTGTGTAGTCCTAGGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTGCATAGACTACGCTTT
65 TTGTGTAGTCCTAAGACAACACTTTTGTGGCGACACTTTCCTAAGTGTTGGATAAACTACGCTTT
81614186 C-
130 CT
* * * *
81614187 GTCAACTCTTTATATAAGGGTTGGGATATGTATGCCTAAGGCAATGCTTGAATAAGAGTTGGTTT
1 G-CAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTT
* *
81614252 TTGTGTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGCTGCGATAAACTACGCTT
65 TTGTGTAGTCCTAAGACAACACTTTTGTGGCGACACTTTCCTAAGTGTTG-GATAAACTACGCTT
*
81614317 TCG
129 TCT
**
81614320 GCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAGCAAGAGTTGGCTTT
1 GCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTT
* * * *
81614385 TGTCTAGTCCTAAGACTACAGTTTTGGGGCGACACTTTCCTAAGTGTT
66 TGTGTAGTCCTAAGACAACACTTTTGTGGCGACACTTTCCTAAGTGTT
81614433 CAGATAGACC
Statistics
Matches: 447, Mismatches: 52, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
130 15 0.03
131 256 0.57
132 172 0.38
133 4 0.01
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (131 bp):
GCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTT
TGTGTAGTCCTAAGACAACACTTTTGTGGCGACACTTTCCTAAGTGTTGGATAAACTACGCTTTC
T
Found at i:81614205 original size:262 final size:262
Alignment explanation
Indices: 81613645--81614432 Score: 983
Period size: 262 Copynumber: 3.0 Consensus size: 262
81613635 CTGGCCAACA
* * * * * *
81613645 TACGTTTTCGGCAACTTTTTGTATAAGGGTTGCGATATGCATGCCTAAAGCAACGCTTAAATAAG
1 TACGCTTTCGTCAACTATTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAG
* * *
81613710 AGTTGGC-TTTGTCTAGTCCTAAGACGACA-TTTATGAGGCAACACTTTTCTAAGTGTTGCGATA
66 AGTTGGCTTTTGTGTAGTCCTAAGACGACACTTT-TGTGGCAACACTTTCCTAAGTGTTG-G---
* * * * * *
81613773 GACTGGCCAACATACACTTTTGGCAACTCTTTGTATAAGGGTTGGGATAAGCATGCCTAAAGCAA
126 GA-T---AAAC-TACGC-TTTGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAA
* * *
81613838 CGCTTAAATAAGAGTTGGTG-TTGTGTAGTCCTAAGACAACACTTTTGGGGCAACACTTTCCTAA
185 CGCTT-GATAAGAGTTGGAGTTTGTGTAGTCCTAAGACAACACTTTTGGGGCGACACTTTCCTAA
* *
81613902 GTGTTGGACTATAC
249 GTGTTGCACTAGAC
* * *
81613916 TATGCTTTC-TCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCCTGAATAA
1 TACGCTTTCGT-CAACTATTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAA
* **
81613980 GAGTTGGCTTTTGTGTAGTCATAAGATAACACTTTTGTGGCAACACTTTCCTAAGTGTTGGGATA
65 GAGTTGGCTTTTGTGTAGTCCTAAGACGACACTTTTGTGGCAACACTTTCCTAAGTGTTGGGATA
* *
81614045 AACTACGCTCTGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGCATA
130 AACTACGCTTTGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTG-ATA
* * * *
81614110 AGAGTTGGAGTTTGTGTAGTCCTAGGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTGCA-T
194 AGAGTTGGAGTTTGTGTAGTCCTAAGACAACACTTTTGGGGCGACACTTTCCTAAGTGTTGCACT
81614174 AGAC
259 AGAC
* * * *
81614178 TACGCTTTCGTCAACTCTTTATATAAGGGTTGGGATATGTATGCCTAAGGCAATGCTTGAATAAG
1 TACGCTTTCGTCAACTATTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAG
* * * *
81614243 AGTTGGTTTTTGTGTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGCTGCGATAA
66 AGTTGGCTTTTGTGTAGTCCTAAGACGACACTTTTGTGGCAACACTTTCCTAAGTGTTGGGATAA
*
81614308 ACTACGCTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAGCA
131 ACTACGCTTT-GGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGA-TA
** * * *
81614373 AGAGTTGGCTTTTGTCTAGTCCTAAGACTACAGTTTTGGGGCGACACTTTCCTAAGTGTT
194 AGAGTTGGAGTTTGTGTAGTCCTAAGACAACACTTTTGGGGCGACACTTTCCTAAGTGTT
81614433 CAGATAGACC
Statistics
Matches: 452, Mismatches: 57, Indels: 24
0.85 0.11 0.05
Matches are distributed among these distances:
262 186 0.41
263 153 0.34
264 3 0.01
267 1 0.00
268 2 0.00
271 63 0.14
272 41 0.09
273 3 0.01
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (262 bp):
TACGCTTTCGTCAACTATTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAG
AGTTGGCTTTTGTGTAGTCCTAAGACGACACTTTTGTGGCAACACTTTCCTAAGTGTTGGGATAA
ACTACGCTTTGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGATAAG
AGTTGGAGTTTGTGTAGTCCTAAGACAACACTTTTGGGGCGACACTTTCCTAAGTGTTGCACTAG
AC
Found at i:81614595 original size:2 final size:2
Alignment explanation
Indices: 81614588--81614613 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
81614578 CAGTTTGTGA
81614588 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
81614614 TCAAATTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81614747 original size:7 final size:7
Alignment explanation
Indices: 81614687--81614825 Score: 68
Period size: 7 Copynumber: 19.4 Consensus size: 7
81614677 TCAATTTAGG
81614687 TTAGGGT
1 TTAGGGT
*
81614694 TTAAGGT
1 TTAGGGT
*
81614701 TTAGTGT
1 TTAGGGT
*
81614708 TTAGAGT
1 TTAGGGT
**
81614715 TTAAAGT
1 TTAGGGT
81614722 TTAGGGAT
1 TTAGGG-T
81614730 TGTA--G-
1 T-TAGGGT
*
81614735 TTATGGT
1 TTAGGGT
*
81614742 TTATGGT
1 TTAGGGT
* *
81614749 GTAAGGTT
1 -TTAGGGT
81614757 TTAGGGTT
1 TTAGGG-T
* *
81614765 TTTGTGT
1 TTAGGGT
81614772 TTATGGGT
1 TTA-GGGT
*
81614780 TTGGGGT
1 TTAGGGT
**
81614787 TTAAGATT
1 TT-AGGGT
81614795 TTAGGGT
1 TTAGGGT
*
81614802 TTAGAGT
1 TTAGGGT
81614809 TTAGGGT
1 TTAGGGT
81614816 TTAGGGT
1 TTAGGGT
81614823 TTA
1 TTA
81614826 TGGATTTTTT
Statistics
Matches: 99, Mismatches: 24, Indels: 18
0.70 0.17 0.13
Matches are distributed among these distances:
4 2 0.02
5 1 0.01
6 1 0.01
7 73 0.74
8 20 0.20
9 2 0.02
ACGTcount: A:0.19, C:0.00, G:0.33, T:0.47
Consensus pattern (7 bp):
TTAGGGT
Found at i:81615456 original size:8 final size:8
Alignment explanation
Indices: 81615406--81615456 Score: 50
Period size: 9 Copynumber: 5.9 Consensus size: 8
81615396 TTTATATGTT
81615406 AATTTAAA
1 AATTTAAA
81615414 AATTATAAA
1 AATT-TAAA
81615423 AATCTTCAAAA
1 AAT-TT--AAA
81615434 ATATTTAAA
1 A-ATTTAAA
81615443 AA-TTAAA
1 AATTTAAA
81615450 AATTTAA
1 AATTTAA
81615457 TATTTTAATC
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
7 7 0.19
8 9 0.24
9 12 0.32
10 1 0.03
11 6 0.16
12 2 0.05
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (8 bp):
AATTTAAA
Found at i:81615528 original size:22 final size:21
Alignment explanation
Indices: 81615503--81615559 Score: 51
Period size: 22 Copynumber: 2.6 Consensus size: 21
81615493 TCAAAAAATT
81615503 TATAAAATAAAAATAGAAAAAA
1 TATAAAATAAAAAT-GAAAAAA
***
81615525 TATATGTTAAAAATGAAAAAA
1 TATAAAATAAAAATGAAAAAA
* *
81615546 AATTAAAACAAAAA
1 TA-TAAAATAAAAA
81615560 CTTTTCAGTA
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
21 8 0.31
22 18 0.69
ACGTcount: A:0.72, C:0.02, G:0.05, T:0.21
Consensus pattern (21 bp):
TATAAAATAAAAATGAAAAAA
Found at i:81616273 original size:35 final size:35
Alignment explanation
Indices: 81616140--81616260 Score: 197
Period size: 35 Copynumber: 3.5 Consensus size: 35
81616130 GCAAACCTAT
* * *
81616140 TGCATCTGTCGTCCTCTGCCTGCCCCAGCCATCGG
1 TGCATCTGCCGTCCACTGCCTGCCCCAGCCACCGG
*
81616175 TGCATCTGCCGTCCACTGCCTGCCCCAGCCACGGG
1 TGCATCTGCCGTCCACTGCCTGCCCCAGCCACCGG
*
81616210 TGCATCTGCCGTCCATTGCCTGCCCCAGCCACCGG
1 TGCATCTGCCGTCCACTGCCTGCCCCAGCCACCGG
81616245 TGCATCTGCCGTCCAC
1 TGCATCTGCCGTCCAC
81616261 CACCTGCTCC
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 79 1.00
ACGTcount: A:0.11, C:0.45, G:0.23, T:0.21
Consensus pattern (35 bp):
TGCATCTGCCGTCCACTGCCTGCCCCAGCCACCGG
Found at i:81618961 original size:11 final size:12
Alignment explanation
Indices: 81618940--81618973 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
81618930 GGTTAGTAAA
*
81618940 CCTTTTCTTTTC
1 CCTTTTTTTTTC
*
81618952 CTTTTTTTTTTC
1 CCTTTTTTTTTC
81618964 CCTTTTTTTT
1 CCTTTTTTTT
81618974 AAAAATTTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
CCTTTTTTTTTC
Found at i:81621385 original size:46 final size:46
Alignment explanation
Indices: 81621333--81621424 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
81621323 TGGATAGAAA
81621333 AATTATACTTATTTGATATATAAGTCAGATTTGAGTTTTAAAAGTT
1 AATTATACTTATTTGATATATAAGTCAGATTTGAGTTTTAAAAGTT
81621379 AATTATACTTATTTGATATATAAGTCAGATTTGAGTTTTAAAAGTT
1 AATTATACTTATTTGATATATAAGTCAGATTTGAGTTTTAAAAGTT
81621425 TGTAATATAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.37, C:0.04, G:0.13, T:0.46
Consensus pattern (46 bp):
AATTATACTTATTTGATATATAAGTCAGATTTGAGTTTTAAAAGTT
Found at i:81627003 original size:48 final size:48
Alignment explanation
Indices: 81626945--81627450 Score: 949
Period size: 48 Copynumber: 10.5 Consensus size: 48
81626935 ATATACACAC
*
81626945 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
81626993 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
81627041 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
81627089 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
81627137 ATCTCATATATATTTCACACTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
81627185 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
81627233 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
81627281 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
81627329 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
81627377 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
81627425 ATCTCATACATATTTCACACTAGCCA
1 ATCTCATACATATTTCACACTAGCCA
81627451 CATATACATA
Statistics
Matches: 449, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 449 1.00
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:81627437 original size:17 final size:17
Alignment explanation
Indices: 81627415--81627472 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
81627405 CGGCTTTACC
81627415 ACATATACATATCTCAT
1 ACATATACATATCTCAT
*
81627432 ACATATTTCACACTAGC-C--
1 ACATA--T-ACA-TATCTCAT
81627450 ACATATACATATCTCAT
1 ACATATACATATCTCAT
81627467 ACATAT
1 ACATAT
81627473 TTCACATTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 14
0.67 0.04 0.29
Matches are distributed among these distances:
14 3 0.09
15 4 0.12
16 1 0.03
17 11 0.34
18 5 0.16
19 1 0.03
20 4 0.12
21 3 0.09
ACGTcount: A:0.40, C:0.26, G:0.02, T:0.33
Consensus pattern (17 bp):
ACATATACATATCTCAT
Found at i:81627455 original size:35 final size:35
Alignment explanation
Indices: 81627413--81627485 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
81627403 TTCGGCTTTA
81627413 CCACATATACATATCTCATACATATTTCACACTAG
1 CCACATATACATATCTCATACATATTTCACACTAG
*
81627448 CCACATATACATATCTCATACATATTTCACATTAG
1 CCACATATACATATCTCATACATATTTCACACTAG
81627483 CCA
1 CCA
81627486 TTCGGCTTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.37, C:0.29, G:0.03, T:0.32
Consensus pattern (35 bp):
CCACATATACATATCTCATACATATTTCACACTAG
Found at i:81630075 original size:74 final size:75
Alignment explanation
Indices: 81629992--81630143 Score: 204
Period size: 75 Copynumber: 2.0 Consensus size: 75
81629982 CAGTTGTCTC
* * * *
81629992 ATAATTTTTTTG-TGTCATG-GGAATCAAGTTGACAACATGTT-GCAA-TGTGTTGATTGCTTTT
1 ATAA-TTTTTTGATGTCATGTGAAAT-AAGTTGACAACATGTTCGCAACT-TGTTGACTACTTCT
81630053 ATTAGGATTTTGT
63 ATTAGGATTTTGT
*
81630066 ATAATTTTTTGATGTCATGTGAAATAGGTTGACAACATGTTCGCAACTTGTTGACTACTTCTATT
1 ATAATTTTTTGATGTCATGTGAAATAAGTTGACAACATGTTCGCAACTTGTTGACTACTTCTATT
81630131 AGGATTTTGT
66 AGGATTTTGT
81630141 ATA
1 ATA
81630144 TAAATTACTA
Statistics
Matches: 69, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
73 7 0.10
74 26 0.38
75 35 0.51
76 1 0.01
ACGTcount: A:0.26, C:0.10, G:0.20, T:0.44
Consensus pattern (75 bp):
ATAATTTTTTGATGTCATGTGAAATAAGTTGACAACATGTTCGCAACTTGTTGACTACTTCTATT
AGGATTTTGT
Found at i:81630400 original size:35 final size:35
Alignment explanation
Indices: 81630337--81630420 Score: 109
Period size: 35 Copynumber: 2.4 Consensus size: 35
81630327 GACAAAGATC
* *
81630337 TATCCCAACCTTTTTAAGTTTGCCTTAGACGGGTT
1 TATCCCAACCATTTTAAGGTTGCCTTAGACGGGTT
* *
81630372 TA-CCCTAACCATTTTAAGGTTGCTTTAGATGGGTT
1 TATCCC-AACCATTTTAAGGTTGCCTTAGACGGGTT
81630407 TATCCCAA-CATTTT
1 TATCCCAACCATTTT
81630421 TTAAGTTGCC
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
34 9 0.21
35 31 0.72
36 3 0.07
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.40
Consensus pattern (35 bp):
TATCCCAACCATTTTAAGGTTGCCTTAGACGGGTT
Found at i:81630429 original size:35 final size:34
Alignment explanation
Indices: 81630337--81630432 Score: 106
Period size: 35 Copynumber: 2.7 Consensus size: 34
81630327 GACAAAGATC
*
81630337 TATCCCAACCTTTTTAAGTTTGCCTTAGACGGGTT
1 TATCCCAACATTTTTAAG-TTGCCTTAGACGGGTT
* *
81630372 TA-CCCTAACCA-TTTTAAGGTTGCTTTAGATGGGTT
1 TATCCC-AA-CATTTTTAA-GTTGCCTTAGACGGGTT
81630407 TATCCCAACATTTTTTAAGTTGCCTT
1 TATCCCAACA-TTTTTAAGTTGCCTT
81630433 GGAAAAGGTC
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
34 5 0.10
35 35 0.69
36 11 0.22
ACGTcount: A:0.22, C:0.21, G:0.16, T:0.42
Consensus pattern (34 bp):
TATCCCAACATTTTTAAGTTGCCTTAGACGGGTT
Found at i:81630457 original size:35 final size:34
Alignment explanation
Indices: 81630407--81630568 Score: 94
Period size: 35 Copynumber: 4.5 Consensus size: 34
81630397 TAGATGGGTT
*
81630407 TATCCCAACATTTTTTAAGTTGCCTTGGAAAAGGTC
1 TATCGCAACA-TTTTTAAGTTGCC-TGGAAAAGGTC
* * * *
81630443 TATCGCAACCTTTTTAGGGTTG-CTGTAAATGGGTC
1 TATCGCAACATTTTTA-AGTTGCCTGGAAA-AGGTC
* * *
81630478 TATCGCAAAATTTTTAACGTTGTCCTAG-ACAGGTC
1 TATCGCAACATTTTTAA-GTTG-CCTGGAAAAGGTC
* * ** *
81630513 AATCGCAACATTTTCTAAAAGTTTCCTTAAACAAGATC
1 TATCGCAACATTTT-T--AAGTTGCCTGGAA-AAGGTC
*
81630551 TATCGCAACCTTTTTAAG
1 TATCGCAACATTTTTAAG
81630569 GTTACCTTAA
Statistics
Matches: 95, Mismatches: 21, Indels: 21
0.69 0.15 0.15
Matches are distributed among these distances:
34 5 0.05
35 48 0.51
36 17 0.18
37 7 0.07
38 18 0.19
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (34 bp):
TATCGCAACATTTTTAAGTTGCCTGGAAAAGGTC
Found at i:81630661 original size:108 final size:106
Alignment explanation
Indices: 81630377--81630675 Score: 244
Period size: 108 Copynumber: 2.8 Consensus size: 106
81630367 GGGTTTACCC
* ** * * * *
81630377 TAACCATTTTAAGGTTGCTTTAGATGGGTTTATCCCAA-CATTTTTTAAGTTGCCTTGGAAAAGG
1 TAACCTTTTTAAGGTTGCTTTAGACAGGTCTAT-CCAACCTTTTTTTAAGTTGCCTTAGACAAGG
* * * **
81630441 TCTATCGCAACCTTTTTAGGGTTGCTGTAAATGGGTCTATCG
65 TCTATCGCAACCTTTTTAAGGTTCCTGTAAACGAATCTATCG
* ** * * * * ** * *
81630483 CAAAATTTTTAACGTTG-TCCTAGACAGGTCAATCGCAACATTTTCTAAAAGTTTCCTTAAACAA
1 TAACCTTTTTAAGGTTGCT-TTAGACAGGTCTATC-CAACCTTTT-TTTAAGTTGCCTTAGACAA
* *
81630547 GATCTATCGCAACCTTTTTAAGGTTACCT-TAAACGAATCTATCAT
63 GGTCTATCGCAACCTTTTTAAGGTT-CCTGTAAACGAATCTATC-G
* *
81630592 TAACCTTTTTAAGGTTGCTTTAGACAAGTCTATCCAACCTTTTTTTAAGGTTGCCATAGACAAGG
1 TAACCTTTTTAAGGTTGCTTTAGACAGGTCTATCCAACCTTTTTTTAA-GTTGCCTTAGACAAGG
* * *
81630657 TCTATTGTAACATTTTTAA
65 TCTATCGCAACCTTTTTAA
81630676 AATGTTGCCG
Statistics
Matches: 143, Mismatches: 42, Indels: 14
0.72 0.21 0.07
Matches are distributed among these distances:
105 2 0.01
106 24 0.17
107 6 0.04
108 83 0.58
109 27 0.19
110 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (106 bp):
TAACCTTTTTAAGGTTGCTTTAGACAGGTCTATCCAACCTTTTTTTAAGTTGCCTTAGACAAGGT
CTATCGCAACCTTTTTAAGGTTCCTGTAAACGAATCTATCG
Found at i:81630673 original size:37 final size:37
Alignment explanation
Indices: 81630597--81630834 Score: 157
Period size: 38 Copynumber: 6.4 Consensus size: 37
81630587 ATCATTAACC
** *
81630597 TTTTTAAGGTTGCTTTAGACAA-GTCTA-TCCAACCTT
1 TTTTTAAGGTTGCCGTAGACAAGGTCTATTGCAA-CTT
* *
81630633 TTTTTAAGGTTGCCATAGACAAGGTCTATTGTAACATT
1 TTTTTAAGGTTGCCGTAGACAAGGTCTATTGCAAC-TT
** * *
81630671 TTTAAAATGTTGCCGTAGAC-AGGTCTATCGCAACTT
1 TTTTTAAGGTTGCCGTAGACAAGGTCTATTGCAACTT
* * * * ***
81630707 TTTTTCATGGTTGCCGTAAACAAGATATACCACAACTT
1 TTTTT-AAGGTTGCCGTAGACAAGGTCTATTGCAACTT
* * * *
81630745 TTTTAAAAGGTTGCCGTAGATAAAGTCTATAGCAA-TT
1 TTTT-TAAGGTTGCCGTAGACAAGGTCTATTGCAACTT
* *
81630782 TTTATTAAGGGTTGCCGTAAACAAGG-CT-TCTCGCAAC-C
1 TTT-TTAA-GGTTGCCGTAGACAAGGTCTAT-T-GCAACTT
81630820 TTTTTAAGGTTGCCG
1 TTTTTAAGGTTGCCG
81630835 AAAATGAATC
Statistics
Matches: 156, Mismatches: 35, Indels: 22
0.73 0.16 0.10
Matches are distributed among these distances:
36 34 0.22
37 43 0.28
38 79 0.51
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (37 bp):
TTTTTAAGGTTGCCGTAGACAAGGTCTATTGCAACTT
Found at i:81630711 original size:38 final size:36
Alignment explanation
Indices: 81630407--81630834 Score: 212
Period size: 36 Copynumber: 11.7 Consensus size: 36
81630397 TAGATGGGTT
* * * *
81630407 TATCCCAACATTTTTTAA-GTTGCCTTGGAAAAGGTC
1 TATCGCAAC-TTTTTTAAGGTTGCCGTAGACAAGGTC
* * * *
81630443 TATCGCAACCTTTTTAGGGTTGCTGTA-A-ATGGGTC
1 TATCGCAACTTTTTTAAGGTTGCCGTAGACA-AGGTC
** *
81630478 TATCGCAAAATTTTTAACGTTGTCC-TAGAC-AGGTC
1 TATCGCAACTTTTTTAAGGTTG-CCGTAGACAAGGTC
* * * * * * *
81630513 AATCGCAACATTTTCTAAAAGTTTCCTTAAACAAGATC
1 TATCGCAAC-TTTT-TTAAGGTTGCCGTAGACAAGGTC
* * * *
81630551 TATCGCAACCTTTTTAAGGTTACCTTAAACGAA--TC
1 TATCGCAACTTTTTTAAGGTTGCCGTAGAC-AAGGTC
** * **
81630586 TATCATTAACCTTTTTAAGGTTGCTTTAGACAA-GTC
1 TATC-GCAACTTTTTTAAGGTTGCCGTAGACAAGGTC
*
81630622 TATC-CAACCTTTTTTTAAGGTTGCCATAGACAAGGTC
1 TATCGCAA-C-TTTTTTAAGGTTGCCGTAGACAAGGTC
* * * *
81630659 TATTGTAACATTTTTAAAATGTTGCCGTAGAC-AGGTC
1 TATCGCAAC-TTTTT-TAAGGTTGCCGTAGACAAGGTC
* * * *
81630696 TATCGCAACTTTTTTTCATGGTTGCCGTAAACAAGATA
1 TATCGCAAC-TTTTTT-AAGGTTGCCGTAGACAAGGTC
* * * *
81630734 TACCACAACTTTTTTAAAAGGTTGCCGTAGATAAAGTC
1 TATCGCAACTTTTTT--AAGGTTGCCGTAGACAAGGTC
* * *
81630772 TATAGCAATTTTTATTAAGGGTTGCCGTAAACAAGG-C
1 TATCGCAACTTTT-TTAA-GGTTGCCGTAGACAAGGTC
* *
81630809 TTCTCGCAACCTTTTTAAGGTTGCCG
1 -TATCGCAACTTTTTTAAGGTTGCCG
81630835 AAAATGAATC
Statistics
Matches: 299, Mismatches: 70, Indels: 46
0.72 0.17 0.11
Matches are distributed among these distances:
34 3 0.01
35 51 0.17
36 90 0.30
37 69 0.23
38 84 0.28
39 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.36
Consensus pattern (36 bp):
TATCGCAACTTTTTTAAGGTTGCCGTAGACAAGGTC
Found at i:81630952 original size:35 final size:36
Alignment explanation
Indices: 81630877--81630966 Score: 119
Period size: 35 Copynumber: 2.5 Consensus size: 36
81630867 CTCTAAACGA
* *
81630877 GTCTATCGCAACCATTTTTAACAGTTGTCTTAAATTG
1 GTCTATCGCAACC-TTTTTAACAGTTGTATTAAATGG
* **
81630914 GTCTATCGCAACCCTTTTATGA-TTGTATTAAATGG
1 GTCTATCGCAACCTTTTTAACAGTTGTATTAAATGG
81630949 GTCTATCGCAACCTTTTT
1 GTCTATCGCAACCTTTTT
81630967 TAAAGGTTGC
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
35 28 0.60
36 6 0.13
37 13 0.28
ACGTcount: A:0.24, C:0.20, G:0.14, T:0.41
Consensus pattern (36 bp):
GTCTATCGCAACCTTTTTAACAGTTGTATTAAATGG
Found at i:81631655 original size:14 final size:15
Alignment explanation
Indices: 81631622--81631659 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
81631612 AGGGATGAAC
*
81631622 ATAAAAATATACGAA
1 ATAAAAATATACAAA
*
81631637 TTAAAAATATA-AAA
1 ATAAAAATATACAAA
81631651 ATAAAAATA
1 ATAAAAATA
81631660 GAAATAGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (15 bp):
ATAAAAATATACAAA
Found at i:81632363 original size:14 final size:14
Alignment explanation
Indices: 81632346--81632389 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
81632336 TTTTTTCTTG
* *
81632346 TTCTTCTTTTTTTC
1 TTCTTCTTTCTCTC
*
81632360 TTCTCCTTTCTCTC
1 TTCTTCTTTCTCTC
81632374 TT-TTCTTTCTCTC
1 TTCTTCTTTCTCTC
81632387 TTC
1 TTC
81632390 CGATGCGTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
13 12 0.48
14 13 0.52
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (14 bp):
TTCTTCTTTCTCTC
Found at i:81632613 original size:26 final size:27
Alignment explanation
Indices: 81632584--81632640 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
81632574 TATATATTTA
81632584 AATATTTTTA-ATAAAAATA-AAAAAAT
1 AATATTTTTATATAAAAA-ACAAAAAAT
*
81632610 AATA-TTTTATTTAAAAAACAAAAAAT
1 AATATTTTTATATAAAAAACAAAAAAT
81632636 AATAT
1 AATAT
81632641 AAAAAATTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
25 6 0.22
26 21 0.78
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (27 bp):
AATATTTTTATATAAAAAACAAAAAAT
Found at i:81634497 original size:19 final size:18
Alignment explanation
Indices: 81634473--81634563 Score: 130
Period size: 19 Copynumber: 4.9 Consensus size: 18
81634463 AATCATATCT
81634473 TCTAAGATTGCTTATCATA
1 TCTAAGATTGC-TATCATA
*
81634492 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
*
81634510 TCTAAGATTG-TATAATA
1 TCTAAGATTGCTATCATA
81634527 TCTAAGATTGCATATCATA
1 TCTAAGATTGC-TATCATA
81634546 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
81634564 TGAAGATTAT
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
17 15 0.23
18 16 0.24
19 35 0.53
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:81634533 original size:35 final size:37
Alignment explanation
Indices: 81634466--81634556 Score: 136
Period size: 35 Copynumber: 2.5 Consensus size: 37
81634456 ATTACAAAAT
*
81634466 CATATC-T-TCTAAGATTGCTTATCATATCTAAGATTG
1 CATATCATATCTAAGATTGC-TATAATATCTAAGATTG
81634502 CA-ATCATATCTAAGATTG-TATAATATCTAAGATTG
1 CATATCATATCTAAGATTGCTATAATATCTAAGATTG
81634537 CATATCATATCTAAGATTGC
1 CATATCATATCTAAGATTGC
81634557 ATATCATTGA
Statistics
Matches: 50, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
35 21 0.42
36 19 0.38
37 10 0.20
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGCTATAATATCTAAGATTG
Found at i:81635622 original size:61 final size:62
Alignment explanation
Indices: 81635507--81635624 Score: 150
Period size: 61 Copynumber: 1.9 Consensus size: 62
81635497 CTGGTATAAT
* * * * * *
81635507 AATAAATTTAACCTTTAATACTTTGCATATTTTATTAAATTGGTCCTAATTCTAAAAATTTC
1 AATAAATTTAACCATCAATACTTTACACATTTTATTAAATTAGTCCAAATTCTAAAAATTTC
*
81635569 AATAAATTTAACCATCAATA-TTTACACATTTTGA-TAATTTAGTCCAAATTCTAAAA
1 AATAAATTTAACCATCAATACTTTACACATTTT-ATTAAATTAGTCCAAATTCTAAAA
81635625 TTTTGAAAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
61 29 0.60
62 19 0.40
ACGTcount: A:0.41, C:0.14, G:0.04, T:0.42
Consensus pattern (62 bp):
AATAAATTTAACCATCAATACTTTACACATTTTATTAAATTAGTCCAAATTCTAAAAATTTC
Found at i:81636371 original size:8 final size:9
Alignment explanation
Indices: 81636343--81636368 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
81636333 AGACCCCTTA
81636343 AAAATTTTT
1 AAAATTTTT
81636352 AAAATTTTT
1 AAAATTTTT
81636361 AAAATTTT
1 AAAATTTT
81636369 AAATTAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (9 bp):
AAAATTTTT
Found at i:81637016 original size:31 final size:31
Alignment explanation
Indices: 81636981--81637054 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
81636971 CAGTAAAGTA
* *
81636981 ACTAAAATTAACAATTTATCTAATGGAAATG
1 ACTAAAATTAACAACTTATCTAACGGAAATG
* * * *
81637012 ACTAAAATTGATAACTTCTCTAACGGGAATG
1 ACTAAAATTAACAACTTATCTAACGGAAATG
81637043 ACTAAAA-TAACA
1 ACTAAAATTAACA
81637055 TTTTTTTTAA
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
30 3 0.09
31 32 0.91
ACGTcount: A:0.47, C:0.14, G:0.11, T:0.28
Consensus pattern (31 bp):
ACTAAAATTAACAACTTATCTAACGGAAATG
Found at i:81637487 original size:14 final size:14
Alignment explanation
Indices: 81637468--81637497 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
81637458 GAACAACATG
81637468 GGGTAAGACAAGGA
1 GGGTAAGACAAGGA
81637482 GGGTAAGACAAGGA
1 GGGTAAGACAAGGA
81637496 GG
1 GG
81637498 AGGTTATGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.07, G:0.47, T:0.07
Consensus pattern (14 bp):
GGGTAAGACAAGGA
Found at i:81639112 original size:7 final size:6
Alignment explanation
Indices: 81639071--81639111 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
81639061 ATAATTTAAT
*
81639071 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
81639112 ACATATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:81639112 original size:20 final size:20
Alignment explanation
Indices: 81639074--81639113 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
81639064 ATTTAATAAA
**
81639074 TAAAAATAAAAATCTAAAAC
1 TAAAAATAAAAATAAAAAAC
81639094 TAAAAATAAAAATAAAAAAC
1 TAAAAATAAAAATAAAAAAC
81639114 ATATAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.17
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:81639149 original size:9 final size:9
Alignment explanation
Indices: 81639131--81639234 Score: 127
Period size: 9 Copynumber: 11.6 Consensus size: 9
81639121 TTTATACAAA
*
81639131 TAATTTGGT
1 TAATTCGGT
81639140 TAATTCGGT
1 TAATTCGGT
* *
81639149 TAATTTGGG
1 TAATTCGGT
*
81639158 TAATTCGGG
1 TAATTCGGT
81639167 TAATTCGGT
1 TAATTCGGT
*
81639176 TAATTCGAT
1 TAATTCGGT
**
81639185 TAATTCGAC
1 TAATTCGGT
81639194 TAATTCGGT
1 TAATTCGGT
*
81639203 TAATTCGAT
1 TAATTCGGT
*
81639212 TAATTCAGT
1 TAATTCGGT
81639221 TAATTCGGT
1 TAATTCGGT
81639230 TAATT
1 TAATT
81639235 TTATACTTAT
Statistics
Matches: 82, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 82 1.00
ACGTcount: A:0.27, C:0.10, G:0.19, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:81640260 original size:179 final size:179
Alignment explanation
Indices: 81639960--81640293 Score: 641
Period size: 179 Copynumber: 1.9 Consensus size: 179
81639950 GAACTAGAAA
*
81639960 TCAATAGAAATCAACAAAATTGTTATTTCAGAAAATAGATTTAATATTCAGAGAATAAAACTCTT
1 TCAATAGAAATCAACAAAATTGTTATTTCAGAAAATAGATTTAATATTCAGAGAATAAAACTCTC
*
81640025 ACTATTTTTTAGTAGAATAACAATATCTTAATGTTGTGTATTTTACCCTACTAGTGACATCTATT
66 ACTATTTTTTAGTAGAATAACAATATCTTAAAGTTGTGTATTTTACCCTACTAGTGACATCTATT
81640090 TATAGGGAGAAGAAGTAAAGTCTTTTAGAGTGAAAACAAAAATCTCTTC
131 TATAGGGAGAAGAAGTAAAGTCTTTTAGAGTGAAAACAAAAATCTCTTC
*
81640139 TCAATAGAAATCGACAAAATTGTTATTTCAGAAAATAGATTTAATATTCAGAGAATAAAACTCTC
1 TCAATAGAAATCAACAAAATTGTTATTTCAGAAAATAGATTTAATATTCAGAGAATAAAACTCTC
81640204 ACTATTTTTTAGTAGAATAACAATATCTTAAAGTTGTGTATTTTACCCTACTAGTGACATCTATT
66 ACTATTTTTTAGTAGAATAACAATATCTTAAAGTTGTGTATTTTACCCTACTAGTGACATCTATT
81640269 TATAGGGAGAAGAAGTAAAGTCTTT
131 TATAGGGAGAAGAAGTAAAGTCTTT
81640294 GTTGAATTGT
Statistics
Matches: 152, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
179 152 1.00
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (179 bp):
TCAATAGAAATCAACAAAATTGTTATTTCAGAAAATAGATTTAATATTCAGAGAATAAAACTCTC
ACTATTTTTTAGTAGAATAACAATATCTTAAAGTTGTGTATTTTACCCTACTAGTGACATCTATT
TATAGGGAGAAGAAGTAAAGTCTTTTAGAGTGAAAACAAAAATCTCTTC
Found at i:81641956 original size:51 final size:51
Alignment explanation
Indices: 81641901--81642120 Score: 192
Period size: 51 Copynumber: 4.3 Consensus size: 51
81641891 GACTTTCACA
* **
81641901 TAGTACCACACTTGTGATCAAAACCATCTCTTACACATAGTAGCCTGCACT
1 TAGTACCACACATGTGATCAAAACCATCTGGTACACATAGTAGCCTGCACT
* * *
81641952 TAGTACCACACATGTGATCAAAGCTATCAGGTACGA-ATAGTAGCCTGCACT
1 TAGTACCACACATGTGATCAAAACCATCTGGTAC-ACATAGTAGCCTGCACT
* * ** * *
81642003 TAGTACTACACATGCGA-CCTAACCGTCTGGTACACGTAGTAGCCTGCACT
1 TAGTACCACACATGTGATCAAAACCATCTGGTACACATAGTAGCCTGCACT
* * * * * *** * *
81642053 TACTACTACACACGTGACCTAAAACCATTTTAAACACATAGTAGCCTGAACA
1 TAGTACCACACATGTGATC-AAAACCATCTGGTACACATAGTAGCCTGCACT
* *
81642105 TAGTACTATACATGTG
1 TAGTACCACACATGTG
81642121 TTCTCACAAC
Statistics
Matches: 134, Mismatches: 31, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
49 1 0.01
50 38 0.28
51 59 0.44
52 36 0.27
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.25
Consensus pattern (51 bp):
TAGTACCACACATGTGATCAAAACCATCTGGTACACATAGTAGCCTGCACT
Found at i:81642287 original size:13 final size:14
Alignment explanation
Indices: 81642266--81642299 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
81642256 ACCACATCTC
*
81642266 ATATAATAACA-AA
1 ATATTATAACATAA
81642279 ATATTATAACATAA
1 ATATTATAACATAA
81642293 ATATTAT
1 ATATTAT
81642300 TTACATACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (14 bp):
ATATTATAACATAA
Found at i:81647665 original size:24 final size:24
Alignment explanation
Indices: 81647638--81647690 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
81647628 TACATTTGAT
*
81647638 TATGAGAATACATCTGATTCCGTA
1 TATGAGAATACATCTGAATCCGTA
** *
81647662 TATGAGAATATGTCTGAATCTGTA
1 TATGAGAATACATCTGAATCCGTA
81647686 TATGA
1 TATGA
81647691 AAACGTATCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (24 bp):
TATGAGAATACATCTGAATCCGTA
Found at i:81652701 original size:23 final size:23
Alignment explanation
Indices: 81652650--81652707 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
81652640 TAGAATGTCA
*
81652650 GTATGGCGTATTCTGTAAAACTT
1 GTATGGCGTATTCGGTAAAACTT
* *
81652673 GTATGGAGTATTCGGTAAAGCTT
1 GTATGGCGTATTCGGTAAAACTT
81652696 -TCATGGCGTATT
1 GT-ATGGCGTATT
81652708 TGGAGATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 1 0.03
23 29 0.97
ACGTcount: A:0.24, C:0.12, G:0.26, T:0.38
Consensus pattern (23 bp):
GTATGGCGTATTCGGTAAAACTT
Found at i:81655941 original size:34 final size:34
Alignment explanation
Indices: 81655898--81655965 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
81655888 GGGTAGGTGA
81655898 CTTAATTGATAAATAAATAATAAACCTAAAGGCT
1 CTTAATTGATAAATAAATAATAAACCTAAAGGCT
81655932 CTTAATTGATAAATAAATAATAAACCTAAAGGCT
1 CTTAATTGATAAATAAATAATAAACCTAAAGGCT
81655966 AGCTATCATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.50, C:0.12, G:0.09, T:0.29
Consensus pattern (34 bp):
CTTAATTGATAAATAAATAATAAACCTAAAGGCT
Found at i:81656721 original size:49 final size:48
Alignment explanation
Indices: 81656660--81656815 Score: 165
Period size: 49 Copynumber: 3.2 Consensus size: 48
81656650 GAGGTGTGTT
* *
81656660 AGTGTAACACCTGTCTAAGACATGGCATCGACATAGATAAGTGAGAGCC
1 AGTGTAAGACCTGTCTAGGACATGGCATCGACATAGAT-AGTGAGAGCC
* * * **
81656709 AGTGTAAGACCTGTCTAGGACATGGCATCGTCCTCGAT-GT-ATGTAAGTT
1 AGTGTAAGACCTGTCTAGGACATGGCATCGACATAGATAGTGA-G--AGCC
* *
81656758 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTAGAT-GTGAGAGCC
1 AGTGTAAGACCTGTCTAGGACATGGCATCGACATAGATAGTGAGAGCC
*
81656805 AATGTAAGACC
1 AGTGTAAGACC
81656816 ATGTTTGGAA
Statistics
Matches: 89, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
46 1 0.01
47 15 0.17
49 72 0.81
50 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTAGGACATGGCATCGACATAGATAGTGAGAGCC
Found at i:81656785 original size:98 final size:91
Alignment explanation
Indices: 81656616--81656815 Score: 247
Period size: 98 Copynumber: 2.1 Consensus size: 91
81656606 TATGCAAGCT
* * * * *
81656616 AGTGTAAAACCTGTCTTGGACATGGCATCGGCTTGAGGTGTGTTAGTGTAACACCTGTCTAAGAC
1 AGTGTAAGACCTGTCTAGGACATGGCATCGCCTCGAGATGTGTTAGTGTAACACCTGTCTAAGAC
81656681 ATGGCATCGACATAGATAAGTGAGAGCC
66 ATGGCATCGACATAGAT--GTGAGAGCC
*
81656709 AGTGTAAGACCTGTCTAGGACATGGCATCGTCCTCGATGTATGTAAGTTAGTGTAAGACCTGTCT
1 AGTGTAAGACCTGTCTAGGACATGGCATCG-CCTCGA-G-ATGT--GTTAGTGTAACACCTGTCT
** *
81656774 GGGACATGGCATCGACTTAGATGTGAGAGCC
61 AAGACATGGCATCGACATAGATGTGAGAGCC
*
81656805 AATGTAAGACC
1 AGTGTAAGACC
81656816 ATGTTTGGAA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
93 28 0.30
94 4 0.04
95 1 0.01
96 22 0.24
98 37 0.40
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (91 bp):
AGTGTAAGACCTGTCTAGGACATGGCATCGCCTCGAGATGTGTTAGTGTAACACCTGTCTAAGAC
ATGGCATCGACATAGATGTGAGAGCC
Found at i:81664344 original size:49 final size:49
Alignment explanation
Indices: 81664283--81664389 Score: 144
Period size: 49 Copynumber: 2.2 Consensus size: 49
81664273 TATAATCAAT
* *
81664283 ATGGCATTGGCCTCAAGGTATGCAAG-CTAGTGTAAGACCTGTCTGGGAC
1 ATGGCATCGGCCTCAAGGTATGCAAGTC-AGTGTAAGACCTGTCTAGGAC
* * *
81664332 ATGGCATCGGCCTCGATGTATGTAAGTCAGTGTAAGACCTGTCTAGGAC
1 ATGGCATCGGCCTCAAGGTATGCAAGTCAGTGTAAGACCTGTCTAGGAC
*
81664381 ATGCCATCG
1 ATGGCATCG
81664390 ACTTAAATGT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
49 50 0.98
50 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (49 bp):
ATGGCATCGGCCTCAAGGTATGCAAGTCAGTGTAAGACCTGTCTAGGAC
Found at i:81677426 original size:18 final size:19
Alignment explanation
Indices: 81677389--81677432 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
81677379 ATTTATTTTT
* *
81677389 TAATATATTATAAATTACA
1 TAATATATTAAAAATAACA
81677408 TAATATA-TAAAAATAACA
1 TAATATATTAAAAATAACA
81677426 TAATATA
1 TAATATA
81677433 AAATATTCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 16 0.70
19 7 0.30
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (19 bp):
TAATATATTAAAAATAACA
Found at i:81683659 original size:27 final size:27
Alignment explanation
Indices: 81683621--81683674 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
81683611 ATAAGAGGAT
* *
81683621 TAGTTCTTCATGGAATCCGTAAACACA
1 TAGTTCCTCATGGAATCCATAAACACA
*
81683648 TAGTTCCTCATGGAATCCATATACACA
1 TAGTTCCTCATGGAATCCATAAACACA
81683675 ATAAACTTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (27 bp):
TAGTTCCTCATGGAATCCATAAACACA
Found at i:81683894 original size:19 final size:19
Alignment explanation
Indices: 81683866--81683902 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
81683856 CAAAAAAACT
81683866 AAAAACTAAAATA-CAAAG
1 AAAAACTAAAATATCAAAG
81683884 AAAAACTTAAAATATCAAA
1 AAAAAC-TAAAATATCAAA
81683903 AGTTATCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 7 0.41
20 4 0.24
ACGTcount: A:0.70, C:0.11, G:0.03, T:0.16
Consensus pattern (19 bp):
AAAAACTAAAATATCAAAG
Found at i:81686029 original size:50 final size:49
Alignment explanation
Indices: 81685975--81686201 Score: 209
Period size: 50 Copynumber: 4.6 Consensus size: 49
81685965 GAGATGTGCC
* *
81685975 AGTGTAAGACCATGTCTGGAATATGGCGTCGGCAC-GGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGG-ACATGGCATCGGCACTGGATAT-TGAGAGCT
* * * *
81686025 AGTGTAAGACCATGTCTAGGATATGGAATTGGCAC-GGATATGTGAGAGTT
1 AGTGTAAGACCATGTCT-GGACATGGCATCGGCACTGGATAT-TGAGAGCT
* * * *
81686075 AGTGTAAGACCATGTCTGGGACATGGCGTTGGC-CTTGAT-TTCGATAGCT
1 AGTGTAAGACCATGTCT-GGACATGGCATCGGCACTGGATATT-GAGAGCT
*
81686124 AGTGTAAGACCATGTCTAGGACATGGCATC-G-ACTTGATA--GATGAGCT
1 AGTGTAAGACCATGTCT-GGACATGGCATCGGCACTGGATATTGA-GAGCT
*
81686171 AGTGTAAGACCATGTCTGGGACATGACATCG
1 AGTGTAAGACCATGTCT-GGACATGGCATCG
81686202 ACATTATACC
Statistics
Matches: 153, Mismatches: 17, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
46 2 0.01
47 32 0.21
48 8 0.05
49 34 0.22
50 75 0.49
51 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGACATGGCATCGGCACTGGATATTGAGAGCT
Found at i:81686193 original size:47 final size:47
Alignment explanation
Indices: 81686074--81686203 Score: 172
Period size: 47 Copynumber: 2.7 Consensus size: 47
81686064 ATGTGAGAGT
* * * *
81686074 TAGTGTAAGACCATGTCTGGGACATGGCGTTGGCCTTGATTTCGATAGC
1 TAGTGTAAGACCATGTCTGGGACATGGC-ATCGACTTGA-TTAGATAGC
*
81686123 TAGTGTAAGACCATGTCTAGGACATGGCATCGACTTGA-TAGATGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATTAGAT-AGC
*
81686170 TAGTGTAAGACCATGTCTGGGACATGACATCGAC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGAC
81686204 ATTATACCCT
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
46 4 0.05
47 35 0.48
48 7 0.10
49 27 0.37
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.27
Consensus pattern (47 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATTAGATAGC
Found at i:81686194 original size:96 final size:98
Alignment explanation
Indices: 81685966--81686195 Score: 256
Period size: 99 Copynumber: 2.3 Consensus size: 98
81685956 ATTGACTACG
* * * *
81685966 AGATGTGCCAGTGTAAGACCATGTCTGGAATATGGCGTCGGCACGGATATGTGAGAGCTAGTGTA
1 AGATGAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCACGGATATGTGAGAGCTAGTGTA
* *
81686031 AGACCATGTCTAGGATATGGAATTGGCACGGAT
66 AGACCATGTCTAGGACATGGAATTCGCACGGAT
* * * *
81686064 ATG-TGAGAGTTAGTGTAAGACCATGTCTGGGACATGGCGTTGGC-CTTGAT-T-TCGATAGCTA
1 A-GAT--GAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCAC-GGATATGT-GAGAGCTA
* *
81686125 GTGTAAGACCATGTCTAGGACATGGCA-TCG-ACTTGAT
61 GTGTAAGACCATGTCTAGGACATGGAATTCGCAC-GGAT
81686162 AGATGAGCTAGTGTAAGACCATGTCTGGGACATG
1 AGATGAGCTAGTGTAAGACCATGTCTGGGACATG
81686196 ACATCGACAT
Statistics
Matches: 112, Mismatches: 13, Indels: 16
0.79 0.09 0.11
Matches are distributed among these distances:
96 29 0.26
97 3 0.03
98 10 0.09
99 35 0.31
100 35 0.31
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.27
Consensus pattern (98 bp):
AGATGAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCACGGATATGTGAGAGCTAGTGTA
AGACCATGTCTAGGACATGGAATTCGCACGGAT
Found at i:81712491 original size:22 final size:22
Alignment explanation
Indices: 81712452--81712510 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
81712442 GTTTTAAGAA
*
81712452 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
81712473 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
81712495 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
81712511 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:81712527 original size:26 final size:24
Alignment explanation
Indices: 81712481--81712540 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
81712471 ATTTGTTTTA
*
81712481 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
81712505 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
81712531 TTTTTTATTT
1 ATATTTATTT
81712541 AATAAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:81713036 original size:30 final size:31
Alignment explanation
Indices: 81712991--81713050 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
81712981 ACTTTGGCGC
81712991 CCTTAAAAATAATAAAAATTT-GAT-TTAAT
1 CCTTAAAAATAATAAAAATTTAGATATTAAT
* *
81713020 CCTTCAAAAATTATAAAGATTTAGATATTAA
1 CCTT-AAAAATAATAAAAATTTAGATATTAA
81713051 AATAGTGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 4 0.15
30 15 0.58
31 3 0.12
32 4 0.15
ACGTcount: A:0.50, C:0.08, G:0.05, T:0.37
Consensus pattern (31 bp):
CCTTAAAAATAATAAAAATTTAGATATTAAT
Found at i:81717655 original size:14 final size:14
Alignment explanation
Indices: 81717638--81717665 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
81717628 TTAAAGCAAG
81717638 AATTAAGAACAAAT
1 AATTAAGAACAAAT
81717652 AATTAAGAACAAAT
1 AATTAAGAACAAAT
81717666 CAAGTATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.07, G:0.07, T:0.21
Consensus pattern (14 bp):
AATTAAGAACAAAT
Found at i:81720211 original size:24 final size:24
Alignment explanation
Indices: 81720179--81720313 Score: 225
Period size: 24 Copynumber: 5.6 Consensus size: 24
81720169 TATCTCAAAT
*
81720179 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
81720203 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
81720227 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
81720251 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
81720275 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
81720299 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
81720314 ACATAATAAG
Statistics
Matches: 107, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 107 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:81720231 original size:48 final size:48
Alignment explanation
Indices: 81720179--81720335 Score: 226
Period size: 48 Copynumber: 3.3 Consensus size: 48
81720169 TATCTCAAAT
* *
81720179 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATA
81720227 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATA
* * * ** *
81720275 GCACTATGTGTGCGATTTGCTATAGCTCTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
81720323 GCACTATGTGTGC
1 GCACTATGTGTGC
81720336 CACATTCGGT
Statistics
Matches: 100, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
48 95 0.95
49 5 0.05
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATA
Found at i:81720327 original size:72 final size:72
Alignment explanation
Indices: 81720179--81720335 Score: 217
Period size: 72 Copynumber: 2.2 Consensus size: 72
81720169 TATCTCAAAT
* * **
81720179 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATT
1 GCACTATGTGTGCGATTCACTATAGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGACA
* *
81720244 TACTATG
66 TAATATA
* * *
81720251 GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTGCTATAGCTCTATGTGTGCGAAC
1 GCACTATGTGTGCGATTCACTATAGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCG-AC
81720316 ATAATA-A
65 ATAATATA
81720323 GCACTATGTGTGC
1 GCACTATGTGTGC
81720336 CACATTCGGT
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
72 70 0.93
73 5 0.07
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (72 bp):
GCACTATGTGTGCGATTCACTATAGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGACA
TAATATA
Found at i:81724403 original size:46 final size:45
Alignment explanation
Indices: 81724281--81724415 Score: 164
Period size: 46 Copynumber: 2.9 Consensus size: 45
81724271 TGTAACCCGC
* *
81724281 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GGATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGATG-CTCGAT
* *** *
81724327 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGATGCTCG-AT
81724374 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
81724416 AACCATCCTA
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
46 42 0.57
47 32 0.43
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGAT
Found at i:81726012 original size:13 final size:12
Alignment explanation
Indices: 81725957--81726025 Score: 61
Period size: 12 Copynumber: 5.7 Consensus size: 12
81725947 TATTAAAGAG
81725957 AAATAAAATAAA
1 AAATAAAATAAA
**
81725969 AAATAATTTAAA
1 AAATAAAATAAA
81725981 AAGAT-AAAT-AA
1 AA-ATAAAATAAA
*
81725992 AGATAAAAGTAAA
1 AAATAAAA-TAAA
*
81726005 AAATAAAAATAAT
1 AAAT-AAAATAAA
81726018 AAATAAAA
1 AAATAAAA
81726026 GTATTCAAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
10 2 0.04
11 6 0.13
12 19 0.42
13 14 0.31
14 4 0.09
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.20
Consensus pattern (12 bp):
AAATAAAATAAA
Found at i:81727345 original size:29 final size:30
Alignment explanation
Indices: 81727313--81727369 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
81727303 ACCATGAATA
* *
81727313 TAATTAAACTAACAA-ATTCAACCAAAAAC
1 TAATGAAACTAACAAGACTCAACCAAAAAC
81727342 TAATGAAACTAACAAGACTCAACCAAAA
1 TAATGAAACTAACAAGACTCAACCAAAA
81727370 GTAATCGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.58, C:0.21, G:0.04, T:0.18
Consensus pattern (30 bp):
TAATGAAACTAACAAGACTCAACCAAAAAC
Found at i:81733525 original size:53 final size:54
Alignment explanation
Indices: 81733455--81733651 Score: 182
Period size: 55 Copynumber: 3.6 Consensus size: 54
81733445 AACTTACCAT
* * * * *
81733455 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACTAT
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAATTACTAA
* * * * **
81733508 TGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGTAGTTTA-TCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG-AAATTACT-AA
* * * * * * *
81733563 TGCCATGTCTTGACATGGTCTTATATGATTTCCTTGCCTTGTAAAAATTACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAATTACTAA
* *
81733617 TGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
81733652 AAACCCTAAT
Statistics
Matches: 112, Mismatches: 28, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
53 37 0.33
54 37 0.33
55 38 0.34
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.39
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAATTACTAA
Found at i:81737990 original size:25 final size:25
Alignment explanation
Indices: 81737962--81738013 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
81737952 AAATTTTAAG
*
81737962 TTAAATTATACAATTGGTCTTCGTA
1 TTAAATTATACAATTGGTCCTCGTA
81737987 TTAAATTATACAATTGGTCCTCGTA
1 TTAAATTATACAATTGGTCCTCGTA
81738012 TT
1 TT
81738014 TTTTCCTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.13, G:0.12, T:0.44
Consensus pattern (25 bp):
TTAAATTATACAATTGGTCCTCGTA
Found at i:81739139 original size:22 final size:22
Alignment explanation
Indices: 81739113--81739186 Score: 87
Period size: 22 Copynumber: 3.3 Consensus size: 22
81739103 TGAAGAAGGG
81739113 ATAAAAAATTACGTTAAAAGAA
1 ATAAAAAATTACGTTAAAAGAA
* ** *
81739135 ATAAAAAATGGA-GAAAAACAGAG
1 ATAAAAAAT-TACGTTAAA-AGAA
81739158 ATAAAAAATTACGTTAAAAGAA
1 ATAAAAAATTACGTTAAAAGAA
81739180 ATAAAAA
1 ATAAAAA
81739187 TGGAGAAAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
22 24 0.59
23 17 0.41
ACGTcount: A:0.66, C:0.04, G:0.12, T:0.18
Consensus pattern (22 bp):
ATAAAAAATTACGTTAAAAGAA
Found at i:81739152 original size:33 final size:33
Alignment explanation
Indices: 81739083--81739152 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
81739073 AAAAATATAG
* * * *
81739083 AAAAATTACGTTGAAAGAAATGAAGAAGGGATA
1 AAAAATTACGTTAAAAGAAATAAAAAAGGGAGA
*
81739116 AAAAATTACGTTAAAAGAAATAAAAAATGGAGA
1 AAAAATTACGTTAAAAGAAATAAAAAAGGGAGA
81739149 AAAA
1 AAAA
81739153 CAGAGATAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.61, C:0.03, G:0.19, T:0.17
Consensus pattern (33 bp):
AAAAATTACGTTAAAAGAAATAAAAAAGGGAGA
Found at i:81739188 original size:44 final size:45
Alignment explanation
Indices: 81739112--81739200 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
81739102 ATGAAGAAGG
81739112 GATAAAAAATTACGTTAAAAGAAATAAAAAATGGAGAAAAACAGA
1 GATAAAAAATTACGTTAAAAGAAATAAAAAATGGAGAAAAACAGA
81739157 GATAAAAAATTACGTTAAAAGAAAT-AAAAATGGAGAAAAACAGA
1 GATAAAAAATTACGTTAAAAGAAATAAAAAATGGAGAAAAACAGA
81739201 AGAAGAATGA
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 19 0.43
45 25 0.57
ACGTcount: A:0.64, C:0.04, G:0.16, T:0.16
Consensus pattern (45 bp):
GATAAAAAATTACGTTAAAAGAAATAAAAAATGGAGAAAAACAGA
Found at i:81749332 original size:2 final size:2
Alignment explanation
Indices: 81749325--81749367 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
81749315 TAATAAGTGA
81749325 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81749367 A
1 A
81749368 AATGTGTAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:81749436 original size:14 final size:14
Alignment explanation
Indices: 81749417--81749444 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
81749407 AGTAAATAAT
81749417 CATATAAAAAAATA
1 CATATAAAAAAATA
81749431 CATATAAAAAAATA
1 CATATAAAAAAATA
81749445 TGAAAACAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.21
Consensus pattern (14 bp):
CATATAAAAAAATA
Found at i:81751363 original size:26 final size:26
Alignment explanation
Indices: 81751334--81751440 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
81751324 TGGTACAAAT
81751334 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
** *
81751360 TGATAAT-AATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81751385 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81751411 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81751437 TGAT
1 TGAT
81751441 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
25 22 0.30
26 51 0.70
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81751390 original size:51 final size:52
Alignment explanation
Indices: 81751334--81751440 Score: 180
Period size: 51 Copynumber: 2.1 Consensus size: 52
81751324 TGGTACAAAT
81751334 TGATAATGGGTTAGGTAAATGTTCCATGATAAT-AATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGAATTAGGTAAATATTCCA
** *
81751385 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGAATTAGGTAAATATTCCA
81751437 TGAT
1 TGAT
81751441 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 33 0.63
52 19 0.37
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGAATTAGGTAAATATTCCA
Found at i:81752848 original size:16 final size:16
Alignment explanation
Indices: 81752827--81752866 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
81752817 AGAACCCTCG
81752827 GTACGTGATTCTGTTA
1 GTACGTGATTCTGTTA
81752843 GTACGTGATTCTGTTA
1 GTACGTGATTCTGTTA
81752859 GTACGTGA
1 GTACGTGA
81752867 AAAGTAGGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.20, C:0.12, G:0.28, T:0.40
Consensus pattern (16 bp):
GTACGTGATTCTGTTA
Found at i:81754446 original size:177 final size:177
Alignment explanation
Indices: 81754116--81754446 Score: 468
Period size: 177 Copynumber: 1.9 Consensus size: 177
81754106 ACATGCTCTT
* *
81754116 TTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAG
1 TTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATTGCCGATACATGGAGATAAG
* * *
81754181 ATTCACTGTCTTCAATCTGCTCCACTACTATTTAGGGAGATAAGATCTGCAATTTTCAGTCTGCT
66 ATTCACAGTCTTCAATCTGCTCCACTACTATTTAGGGAGATAAGATCTACAATTTTCAGTCTACT
* * *
81754246 TCCTTGCTACCTCAAGAAGATAAGGCTTGTACCTTCAACCTGCTTTC
131 TCCCTACAACCTCAAGAAGATAAGGCTTGTACCTTCAACCTGCTTTC
*
81754293 TTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATTGCCGGTACATGGAGATAAG
1 TTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATTGCCGATACATGGAGATAAG
* * * * * *
81754358 ATTCGCAGTCTTCGATCTGCTCCACTATTGCTTT-GGGAGGTAAGATCTATAATTTTCAGTCTAC
66 ATTCACAGTCTTCAATCTGCTCCACTACT-ATTTAGGGAGATAAGATCTACAATTTTCAGTCTAC
* * *
81754422 -TCCACTACAACTTCAGGGAGATAAG
130 TTCC-CTACAACCTCAAGAAGATAAG
81754447 ATCCGTAATT
Statistics
Matches: 134, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
176 3 0.02
177 128 0.96
178 3 0.02
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (177 bp):
TTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATTGCCGATACATGGAGATAAG
ATTCACAGTCTTCAATCTGCTCCACTACTATTTAGGGAGATAAGATCTACAATTTTCAGTCTACT
TCCCTACAACCTCAAGAAGATAAGGCTTGTACCTTCAACCTGCTTTC
Found at i:81754447 original size:45 final size:45
Alignment explanation
Indices: 81754392--81754536 Score: 186
Period size: 45 Copynumber: 3.2 Consensus size: 45
81754382 CTATTGCTTT
* * *
81754392 GGGAGGTAAGATCTATAATTTTCAGTCTACTCCACTACAACTTCA
1 GGGAGATAAGATCTGTAATTTTCAGTCTACTCCACTGCAACTTCA
*
81754437 GGGAGATAAGATCCGTAATTTTCAGTCTACTCCACTGCAACTTCA
1 GGGAGATAAGATCTGTAATTTTCAGTCTACTCCACTGCAACTTCA
* * ** *
81754482 GGGAGATAAGA-CTGGT-ATCTTGAACCTGCTCCACTGCAACTTCA
1 GGGAGATAAGATCT-GTAATTTTCAGTCTACTCCACTGCAACTTCA
81754526 GGGAGATAAGA
1 GGGAGATAAGA
81754537 CTGGTGGCTT
Statistics
Matches: 89, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
44 35 0.39
45 54 0.61
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (45 bp):
GGGAGATAAGATCTGTAATTTTCAGTCTACTCCACTGCAACTTCA
Found at i:81754553 original size:222 final size:221
Alignment explanation
Indices: 81754191--81754641 Score: 566
Period size: 222 Copynumber: 2.0 Consensus size: 221
81754181 ATTCACTGTC
* * * * * * * *
81754191 TTCAATCTGCTCCACTACTATTTAGGGAGATAAGATCTGCAATTTTCAGTCTGCTTCCTTGCTAC
1 TTCAGTCTACTCCACTACAATTCAGGGAGATAAGATCCGCAATTTTCAGTCTACTTCCCTGCAAC
* * * * * *
81754256 CTCAAGAAGATAAGGCTTGTACCTTCAACCTGCTTTCTTGCTACCTCAGAGAGATAAGGCTAGTG
66 CTCAAGAAGATAAGACTGGTACCTTCAACCTGCTTCCCTGCAACCTCAGAGAGATAAGACTAGTG
* *
81754321 GCTAAAATCTACTCCATTGCCGGTACATGGAGATAAGATTCG-CAGTCTTCGATCTGCTCCACTA
131 GCTAAAATCTACTCCATTGCCGATACATGGAGATAAGATCCGTC-GTCTTCGATCTGCTCCACTA
* * * *
81754385 TTGCTTTGGGAGGTAAGATCTATAATT
195 CTGCTTAGAGAGATAAGATCTATAATT
*
81754412 TTCAGTCTACTCCACTACAACTTCAGGGAGATAAGATCCGTAATTTTCAGTCTAC-TCCACTGCA
1 TTCAGTCTACTCCACTACAA-TTCAGGGAGATAAGATCCGCAATTTTCAGTCTACTTCC-CTGCA
* * * * * * * *
81754476 ACTTCAGGGAGATAAGACTGGTATCTTGAACCTGC-TCCACTGCAACTTCAGGGAGATAAGACTG
64 ACCTCAAGAAGATAAGACTGGTACCTTCAACCTGCTTCC-CTGCAACCTCAGAGAGATAAGACTA
*
81754540 GTGGCTTAAATCTACTCCATTGCCGATACATGGAGATAAGATCCGTCGTCTTCGATCTGCTCCAC
128 GTGGCTAAAATCTACTCCATTGCCGATACATGGAGATAAGATCCGTCGTCTTCGATCTGCTCCAC
*
81754605 TACTGCTTAGAGAGATAAGATCTGTAATT
193 TACTGCTTAGAGAGATAAGATCTATAATT
81754634 TTCAGTCT
1 TTCAGTCT
81754642 GTTTCATTGC
Statistics
Matches: 195, Mismatches: 31, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
221 22 0.11
222 172 0.88
223 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (221 bp):
TTCAGTCTACTCCACTACAATTCAGGGAGATAAGATCCGCAATTTTCAGTCTACTTCCCTGCAAC
CTCAAGAAGATAAGACTGGTACCTTCAACCTGCTTCCCTGCAACCTCAGAGAGATAAGACTAGTG
GCTAAAATCTACTCCATTGCCGATACATGGAGATAAGATCCGTCGTCTTCGATCTGCTCCACTAC
TGCTTAGAGAGATAAGATCTATAATT
Found at i:81754558 original size:44 final size:44
Alignment explanation
Indices: 81754417--81754558 Score: 169
Period size: 44 Copynumber: 3.2 Consensus size: 44
81754407 TAATTTTCAG
* * * * *
81754417 TCTACTCCACTACAACTTCAGGGAGATAAGA-TCCGTAATTTTCAG
1 TCTACTCCACTGCAACTTCAGGGAGATAAGACT-GGT-ATCTTAAA
*
81754462 TCTACTCCACTGCAACTTCAGGGAGATAAGACTGGTATCTTGAA
1 TCTACTCCACTGCAACTTCAGGGAGATAAGACTGGTATCTTAAA
* * **
81754506 CCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGTGGCTTAAA
1 TCTACTCCACTGCAACTTCAGGGAGATAAGACTGGTATCTTAAA
81754550 TCTACTCCA
1 TCTACTCCA
81754559 TTGCCGATAC
Statistics
Matches: 84, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
44 51 0.61
45 32 0.38
46 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (44 bp):
TCTACTCCACTGCAACTTCAGGGAGATAAGACTGGTATCTTAAA
Found at i:81754669 original size:177 final size:177
Alignment explanation
Indices: 81754421--81755165 Score: 976
Period size: 177 Copynumber: 4.2 Consensus size: 177
81754411 TTTCAGTCTA
** * ** * * * * * *
81754421 CTCCACTACAACTTCAGGGAGATAAGATCCGTAATTTTCAGTCTACTCCACTGCAACTTCAGGGA
1 CTCCACTACTGCTT-AGGGAGATAAGATCTGTAATTTTCAGTCTGTTTCATTACTACCTCAGGAA
* * * * * *
81754486 GATAAGACTGGTATCTTGAACCTGCTC-CACTGCAACTTCAGGGAGATAAGACTGGTGGCTTAAA
65 GATAAGACTTGTATCTTCAACCTGCTCTC-TTGCAACTTCAGAGAGATAAGGCTGGTGGCTAAAA
* * *
81754550 TCTACTCCATTGCCGATACATGGAGATAAGATCCGTCGTCTTCGATCTG
129 TCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCGTCTTCGATCTG
* * *
81754599 CTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTTCAGTCTGTTTCATTGCTACCTCAGAAAG
1 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGTCTGTTTCATTACTACCTCAGGAAG
* *
81754664 ATAAGACTTGTATCTTCAACCTGCTCTCTTGCTA-TCTCAGAGAGATAGGGCTGGTGGCTAAAAT
66 ATAAGACTTGTATCTTCAACCTGCTCTCTTGCAACT-TCAGAGAGATAAGGCTGGTGGCTAAAAT
* * * *
81754728 CTGCTTCATTGTCGATACATGGAGATAAGATTTGCCGTCTTCGATCTT
130 CTGCTCCATTGCCGATACATGGAGATAAGATTCGCCGTCTTCGATCTG
* * * * *
81754776 CTCTACTATTGCTTAGGGAGATAAGATTTGCAATTTTCAGTCTGCTTTC-TTACTACCTTAGGAA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGTCTG-TTTCATTACTACCTCAGGAA
* * *
81754840 GATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACATCAGAGAAATAAGGCTGGTGGCTAAAAT
65 GATAAGACTTGTATCTTCAACCTGCTCTCTTGCAACTTCAGAGAGATAAGGCTGGTGGCTAAAAT
** *
81754905 CTGCTCCATTGTTGATACATGGAGATAAGATTCGCCATCTTCGATCTG
130 CTGCTCCATTGCCGATACATGGAGATAAGATTCGCCGTCTTCGATCTG
* * * *
81754953 CTTCACTATTGCTTAGGGAGATAAGATCTGTAATTTTCAGTCTGTTTCCTTACTACCTTAGGAAG
1 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGTCTGTTTCATTACTACCTCAGGAAG
* * *
81755018 ATAAGACTTGTATCTTCAACCTACTCTCTTGCTACCTT-AGAGAGATAAGGTTGGTGGCTAAAAT
66 ATAAGACTTGTATCTTCAACCTGCTCTCTTGC-AACTTCAGAGAGATAAGGCTGGTGGCTAAAAT
*
81755082 CTGCTCCATTGCCGATACATGGAGATAAGATTCGTCGTCTTCGATCTG
130 CTGCTCCATTGCCGATACATGGAGATAAGATTCGCCGTCTTCGATCTG
81755130 CTCCACTACTGCTTAGGGAGATAAGATCTGTGAATT
1 CTCCACTACTGCTTAGGGAGATAAGATCTGT-AATT
81755166 CACTGAGGTC
Statistics
Matches: 501, Mismatches: 59, Indels: 14
0.87 0.10 0.02
Matches are distributed among these distances:
176 5 0.01
177 473 0.94
178 23 0.05
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.32
Consensus pattern (177 bp):
CTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGTCTGTTTCATTACTACCTCAGGAAG
ATAAGACTTGTATCTTCAACCTGCTCTCTTGCAACTTCAGAGAGATAAGGCTGGTGGCTAAAATC
TGCTCCATTGCCGATACATGGAGATAAGATTCGCCGTCTTCGATCTG
Found at i:81759810 original size:21 final size:21
Alignment explanation
Indices: 81759762--81759804 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
81759752 AAATGAAATG
81759762 CAAGA-AAAAGAATATTTGCT
1 CAAGATAAAAGAATATTTGCT
*
81759782 CAAGATAAAATAATATTTGCT
1 CAAGATAAAAGAATATTTGCT
81759803 CA
1 CA
81759805 GAATAAGACA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.49, C:0.12, G:0.12, T:0.28
Consensus pattern (21 bp):
CAAGATAAAAGAATATTTGCT
Found at i:81763373 original size:19 final size:19
Alignment explanation
Indices: 81763349--81763394 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
81763339 GTGAAATTTT
* *
81763349 AATGCACATG-ATGCGATG
1 AATGCAAATGCATGAGATG
81763367 AAATGCAAATGCATGAGATG
1 -AATGCAAATGCATGAGATG
81763387 AATGCAAA
1 AATGCAAA
81763395 ACTAAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.43, C:0.13, G:0.24, T:0.20
Consensus pattern (19 bp):
AATGCAAATGCATGAGATG
Found at i:81769107 original size:24 final size:25
Alignment explanation
Indices: 81769074--81769135 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 25
81769064 AAAAAAACAT
*
81769074 TACATAAATATATATTGAAAA-TAGA
1 TACAT-AATATATATTGAAAAGCAGA
* * *
81769099 TATATAATA-ATATTTAAAAGCATA
1 TACATAATATATATTGAAAAGCAGA
81769123 TACATAATATATA
1 TACATAATATATA
81769136 CATAATATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
23 9 0.30
24 14 0.47
25 7 0.23
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (25 bp):
TACATAATATATATTGAAAAGCAGA
Found at i:81769156 original size:9 final size:11
Alignment explanation
Indices: 81769120--81769155 Score: 72
Period size: 11 Copynumber: 3.3 Consensus size: 11
81769110 ATTTAAAAGC
81769120 ATATACATAAT
1 ATATACATAAT
81769131 ATATACATAAT
1 ATATACATAAT
81769142 ATATACATAAT
1 ATATACATAAT
81769153 ATA
1 ATA
81769156 CGAAACAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (11 bp):
ATATACATAAT
Found at i:81769180 original size:11 final size:11
Alignment explanation
Indices: 81769124--81769180 Score: 60
Period size: 11 Copynumber: 4.9 Consensus size: 11
81769114 AAAAGCATAT
*
81769124 ACATAATATAT
1 ACATAATATAC
*
81769135 ACATAATATAT
1 ACATAATATAC
81769146 ACATAATATAC
1 ACATAATATAC
*
81769157 GAAACAAAATATAC
1 ---ACATAATATAC
81769171 ACATAATATA
1 ACATAATATA
81769181 TTAAAACATA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
11 30 0.75
14 10 0.25
ACGTcount: A:0.58, C:0.12, G:0.02, T:0.28
Consensus pattern (11 bp):
ACATAATATAC
Found at i:81769225 original size:19 final size:18
Alignment explanation
Indices: 81769188--81769228 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
81769178 ATATTAAAAC
* *
81769188 ATATACATGACATACATA
1 ATATACATGAAAAACATA
81769206 ATATACATGATAAAACATA
1 ATATACATGA-AAAACATA
81769225 ATAT
1 ATAT
81769229 GATATTTACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.54, C:0.12, G:0.05, T:0.29
Consensus pattern (18 bp):
ATATACATGAAAAACATA
Found at i:81769436 original size:15 final size:14
Alignment explanation
Indices: 81769416--81769450 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
81769406 ACGTGTATAT
*
81769416 ATATATATATTAAAG
1 ATATATATA-TAAAC
81769431 ATATATATATAAAC
1 ATATATATATAAAC
81769445 ATATAT
1 ATATAT
81769451 TAATATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.53
15 9 0.47
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (14 bp):
ATATATATATAAAC
Found at i:81769592 original size:11 final size:12
Alignment explanation
Indices: 81769550--81769598 Score: 50
Period size: 11 Copynumber: 4.2 Consensus size: 12
81769540 AGGAACAACA
*
81769550 ATAATAATATAT
1 ATAAGAATATAT
*
81769562 ATAA-AACA-ACT
1 ATAAGAATATA-T
81769573 ATAAGAATATAT
1 ATAAGAATATAT
81769585 ATAA-AATATAT
1 ATAAGAATATAT
81769596 ATA
1 ATA
81769599 TGTAGTATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
10 1 0.03
11 18 0.56
12 12 0.38
13 1 0.03
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (12 bp):
ATAAGAATATAT
Found at i:81769598 original size:23 final size:23
Alignment explanation
Indices: 81769543--81769590 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
81769533 ATATATTAGG
* *
81769543 AACAACAATAATAATATATATAA
1 AACAACTATAAGAATATATATAA
81769566 AACAACTATAAGAATATATATAA
1 AACAACTATAAGAATATATATAA
81769589 AA
1 AA
81769591 TATATATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.65, C:0.08, G:0.02, T:0.25
Consensus pattern (23 bp):
AACAACTATAAGAATATATATAA
Found at i:81769648 original size:19 final size:20
Alignment explanation
Indices: 81769611--81769652 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
81769601 TAGTATTAAT
81769611 TAAAAATGTTTAAATAATAA
1 TAAAAATGTTTAAATAATAA
81769631 TAAAATATG-TTAAA-AATAA
1 TAAAA-ATGTTTAAATAATAA
81769650 TAA
1 TAA
81769653 CGCGAGAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.38
20 10 0.48
21 3 0.14
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (20 bp):
TAAAAATGTTTAAATAATAA
Found at i:81770731 original size:18 final size:18
Alignment explanation
Indices: 81770704--81770747 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
81770694 AGGTTAGTGG
*
81770704 GTTTTAGGTAGGTTATTT
1 GTTTTGGGTAGGTTATTT
81770722 GTTTTGGGTAGGTTATTT
1 GTTTTGGGTAGGTTATTT
81770740 GTTTTGGG
1 GTTTTGGG
81770748 CCCAAAATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.11, C:0.00, G:0.34, T:0.55
Consensus pattern (18 bp):
GTTTTGGGTAGGTTATTT
Found at i:81771478 original size:44 final size:44
Alignment explanation
Indices: 81771376--81771571 Score: 157
Period size: 44 Copynumber: 4.5 Consensus size: 44
81771366 TTTCAGCCTA
* * * * * *
81771376 TTACCCTACTACTTAGGGGGTT-AAGGTCTATAAATTTGGCT-TG
1 TTACCCTACTGCTTAGGGGGTTAAAGCTC-ATTAACTTCGATCTG
*
81771419 TTACCCTACTGCTTAGGGGGTTAAAGCTCATTATCTTCGATCTG
1 TTACCCTACTGCTTAGGGGGTTAAAGCTCATTAACTTCGATCTG
* * * * * *
81771463 TTTCCCTACTGCTTAGGGTGAT-AAGATCTATGAACTTC-AGCTTG
1 TTACCCTACTGCTTAGGGGGTTAAAGCTC-ATTAACTTCGATC-TG
* * * **
81771507 TTACCCTACTGCTTATGAGGTTAAAGCTCGTTGCCTTCGATCTG
1 TTACCCTACTGCTTAGGGGGTTAAAGCTCATTAACTTCGATCTG
* *
81771551 TTTCCCTACTGCTTATGGGGT
1 TTACCCTACTGCTTAGGGGGT
81771572 AAGATTTGTG
Statistics
Matches: 120, Mismatches: 27, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
43 35 0.29
44 78 0.65
45 7 0.06
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.37
Consensus pattern (44 bp):
TTACCCTACTGCTTAGGGGGTTAAAGCTCATTAACTTCGATCTG
Found at i:81771529 original size:88 final size:87
Alignment explanation
Indices: 81771379--81771576 Score: 263
Period size: 88 Copynumber: 2.3 Consensus size: 87
81771369 CAGCCTATTA
* * * ** *
81771379 CCCTACTACTTAGGGGGTTAAGGTCTATAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAA
1 CCCTACTGCTTAGGGGGATAAGATCTATAAATTCAGCTTGTTACCCTACTGCTTAGGAGGTTAAA
*
81771444 GCTCATTATCTTCGATCTGTTT
66 GCTCATTACCTTCGATCTGTTT
* * *
81771466 CCCTACTGCTTAGGGTGATAAGATCTATGAACTTCAGCTTGTTACCCTACTGCTTATGAGGTTAA
1 CCCTACTGCTTAGGGGGATAAGATCTAT-AAATTCAGCTTGTTACCCTACTGCTTAGGAGGTTAA
* *
81771531 AGCTCGTTGCCTTCGATCTGTTT
65 AGCTCATTACCTTCGATCTGTTT
*
81771554 CCCTACTGCTTATGGGG-TAAGAT
1 CCCTACTGCTTAGGGGGATAAGAT
81771577 TTGTGAATTC
Statistics
Matches: 96, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
87 30 0.31
88 66 0.69
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (87 bp):
CCCTACTGCTTAGGGGGATAAGATCTATAAATTCAGCTTGTTACCCTACTGCTTAGGAGGTTAAA
GCTCATTACCTTCGATCTGTTT
Found at i:81783545 original size:2 final size:2
Alignment explanation
Indices: 81783540--81783569 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
81783530 TATGAAAGAA
81783540 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81783570 GATAATAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81783730 original size:24 final size:25
Alignment explanation
Indices: 81783697--81783758 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 25
81783687 TAAAAAACAT
*
81783697 TACATAAATATATATTGAAAA-TAGA
1 TACAT-AATATATATTGAAAAGCAGA
* * *
81783722 TATATAATA-ATATTTAAAAGCATA
1 TACATAATATATATTGAAAAGCAGA
81783746 TACATAATATATA
1 TACATAATATATA
81783759 CATAATATAC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
23 9 0.30
24 14 0.47
25 7 0.23
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (25 bp):
TACATAATATATATTGAAAAGCAGA
Found at i:81783768 original size:9 final size:11
Alignment explanation
Indices: 81783743--81783767 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
81783733 ATTTAAAAGC
81783743 ATATACATAAT
1 ATATACATAAT
81783754 ATATACATAAT
1 ATATACATAAT
81783765 ATA
1 ATA
81783768 CGAAACAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (11 bp):
ATATACATAAT
Found at i:81784105 original size:30 final size:30
Alignment explanation
Indices: 81784069--81784242 Score: 287
Period size: 30 Copynumber: 5.8 Consensus size: 30
81784059 ACTTTTCTCA
*
81784069 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
81784099 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
81784129 ACTAGCCAC-TCTTTTTCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
81784158 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
81784188 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
81784218 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACACCTTTTCCACCACCA
81784243 CTTGTACCTA
Statistics
Matches: 133, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
29 27 0.20
30 106 0.80
ACGTcount: A:0.25, C:0.49, G:0.03, T:0.22
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:81784155 original size:59 final size:59
Alignment explanation
Indices: 81784069--81784242 Score: 312
Period size: 59 Copynumber: 2.9 Consensus size: 59
81784059 ACTTTTCTCA
*
81784069 ACTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACT-CTTTTTCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
81784129 ACTAGCCACTCTTTTTCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
*
81784188 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCTTTTT-CACCACCAACTCCACTAGCCACACCTTTTCCACCACCA
81784243 CTTGTACCTA
Statistics
Matches: 111, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
59 64 0.58
60 47 0.42
ACGTcount: A:0.25, C:0.49, G:0.03, T:0.22
Consensus pattern (59 bp):
ACTAGCCACTCTTTTTCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:81784862 original size:14 final size:15
Alignment explanation
Indices: 81784803--81784862 Score: 54
Period size: 15 Copynumber: 4.0 Consensus size: 15
81784793 CTATATTACG
*
81784803 TATATATATATATAT
1 TATATATATTTATAT
81784818 T-TATACTATTT-TAT
1 TATATA-TATTTATAT
*
81784832 GTATATATCTTTAATAT
1 -TATATATATTT-ATAT
81784849 TATAT-TATTTATAT
1 TATATATATTTATAT
81784863 ATTTTTTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 11
0.73 0.06 0.22
Matches are distributed among these distances:
14 11 0.30
15 14 0.38
16 9 0.24
17 3 0.08
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (15 bp):
TATATATATTTATAT
Found at i:81784862 original size:25 final size:25
Alignment explanation
Indices: 81784809--81784948 Score: 108
Period size: 25 Copynumber: 5.6 Consensus size: 25
81784799 TACGTATATA
* *
81784809 TATATATATTT-ATACTATTTTATG
1 TATATATTTTTAATACTATATTATG
* * *
81784833 TATATATCTTTAATATTATATTATT
1 TATATATTTTTAATACTATATTATG
** *
81784858 TATATATTTTTTTTACATGTTATCTTATG
1 TATATA---TTTTTA-ATACTATATTATG
*
81784887 TATATA-TCTT-A-ACTATATTATG
1 TATATATTTTTAATACTATATTATG
* *
81784909 TATGTATTTTTAACACTATATTATG
1 TATATATTTTTAATACTATATTATG
*
81784934 TACATATTTTTAATA
1 TATATATTTTTAATA
81784949 TTATCACGTA
Statistics
Matches: 91, Mismatches: 17, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
22 13 0.14
23 4 0.04
24 11 0.12
25 42 0.46
28 5 0.05
29 16 0.18
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.56
Consensus pattern (25 bp):
TATATATTTTTAATACTATATTATG
Found at i:81784865 original size:8 final size:8
Alignment explanation
Indices: 81784803--81784866 Score: 53
Period size: 8 Copynumber: 8.1 Consensus size: 8
81784793 CTATATTACG
*
81784803 TATATATA
1 TATATATT
81784811 TATATATT
1 TATATATT
81784819 TATACTATT
1 TATA-TATT
* *
81784828 T-TATGTA
1 TATATATT
*
81784835 TATATCTT
1 TATATATT
81784843 TA-ATA-T
1 TATATATT
81784849 TATATTATT
1 TATA-TATT
81784858 TATATATT
1 TATATATT
81784866 T
1 T
81784867 TTTTTACATG
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
6 3 0.07
7 6 0.13
8 26 0.58
9 10 0.22
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (8 bp):
TATATATT
Done.