Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 283 of 444
Found at i:81785125 original size:16 final size:15
Alignment explanation
Indices: 81785101--81785148 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
81785091 TAATTATTAT
*
81785101 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
81785117 TATTTTAATATTTTA
1 TATTTTAATATTTTA
81785132 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
81785148 T
1 T
81785149 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:81785136 original size:7 final size:8
Alignment explanation
Indices: 81785101--81785152 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
81785091 TAATTATTAT
*
81785101 TATTCTAA
1 TATTTTAA
*
81785109 TATTTTGA
1 TATTTTAA
81785117 TATTTTAA
1 TATTTTAA
81785125 TATTTT-A
1 TATTTTAA
81785132 TATTTTATA
1 TATTTTA-A
*
81785141 TATTTTAT
1 TATTTTAA
81785149 TATT
1 TATT
81785153 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:81786676 original size:12 final size:12
Alignment explanation
Indices: 81786661--81786696 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
81786651 GACATTTTGA
81786661 CATTCATGCATT
1 CATTCATGCATT
81786673 CATTCATGCATT
1 CATTCATGCATT
*
81786685 CATTCATACATT
1 CATTCATGCATT
81786697 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:81795220 original size:72 final size:71
Alignment explanation
Indices: 81795123--81795275 Score: 234
Period size: 72 Copynumber: 2.1 Consensus size: 71
81795113 TTTAATTTTT
** * *
81795123 TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGGCACGCTGAGGTATTTTCAA
1 TTTTCAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA
*
81795188 TTTTTG
66 TTTCTG
* *
81795194 TGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCA
1 T-TTTCAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
81795259 ATTTCTG
65 ATTTCTG
81795266 TTTTCAATTT
1 TTTTCAATTT
81795276 ACGTTGTTCA
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
71 9 0.12
72 64 0.88
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.39
Consensus pattern (71 bp):
TTTTCAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA
TTTCTG
Found at i:81795460 original size:140 final size:140
Alignment explanation
Indices: 81795208--81795831 Score: 1151
Period size: 140 Copynumber: 4.5 Consensus size: 140
81795198 TTAATTTCAA
81795208 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
81795273 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
81795338 TCAAAATCAG
131 TCAAAATCAG
*
81795348 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
81795413 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
81795478 TCAAAATCAG
131 TCAAAATCAG
*
81795488 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
* *
81795553 TTTACGTTGTTCAAGAATCAACTCATATTGCGAAAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
81795618 TCAAAATCAG
131 TCAAAATCAG
81795628 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
81795693 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
81795758 TCAAAATCAG
131 TCAAAATCAG
* * * * *
81795768 CTCATATTGCGAGA-ATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
81795832 AAAAAAAAAT
Statistics
Matches: 470, Mismatches: 14, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
139 45 0.10
140 425 0.90
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:81795691 original size:13 final size:13
Alignment explanation
Indices: 81795673--81795706 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
81795663 CGCTGAGGTA
*
81795673 TTTTCAATTTCTG
1 TTTTCAATTTATG
81795686 TTTTCAATTTATG
1 TTTTCAATTTATG
81795699 TTGTTCAA
1 TT-TTCAA
81795707 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:81795883 original size:78 final size:75
Alignment explanation
Indices: 81795760--81796054 Score: 341
Period size: 75 Copynumber: 3.9 Consensus size: 75
81795750 CTACTTTTTC
* *
81795760 AAAATCAGCTCATATTGCGAG-AATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCT
81795824 GTTTTCAAAAAAA
66 GTTTTC---AAAA
*
81795837 AAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCT
*
81795902 ATTTTTC-AAA
66 -GTTTTCAAAA
** *
81795912 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA--CTGAGGTATATTTCAATTTC
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTAT-TTTCAATTTC
*
81795975 TGTTGTCAAAA
65 TGTTTTCAAAA
* *** * * * *
81795986 AAAATCAACTCGTATT--GAGAGGCGAGTTGAGCCTCAGGTCACCGCCGAGGTATTTTCAATTTC
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA-TGCTGAGGTATTTTCAATTTC
*
81796049 CGTTTT
65 TGTTTT
81796055 TCAATTTCTG
Statistics
Matches: 195, Mismatches: 16, Indels: 17
0.86 0.07 0.07
Matches are distributed among these distances:
72 23 0.12
73 13 0.07
74 43 0.22
75 50 0.26
77 19 0.10
78 42 0.22
79 5 0.03
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (75 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCT
GTTTTCAAAA
Found at i:81795969 original size:152 final size:146
Alignment explanation
Indices: 81795741--81796058 Score: 376
Period size: 152 Copynumber: 2.1 Consensus size: 146
81795731 GGGTTGAACC
* *
81795741 TTTT-AATTTCTACTTTTTC--AAAATCAGCTCATATTGCGAGAATTAGTTGAGCCTCAAGACAT
1 TTTTCAATTTCTA-TTTTTCAAAAAATCAACTCATATTGCGAGAATGAGTTGAGCCTCAAGACA-
* *
81795803 GCTGAGGTATTTTCAATTTCTGTTTTCAAAAAAAAAAATCAACTCATATTGTGAGAAATGAGTTG
64 GCTGAGGTATTTTCAATTTCTGTTGTC---AAAAAAAATCAACTCATA-T-TGAGAAACGAGTTG
* *
81795868 AGCCTCAAGACA-TGCTGAGGTA
124 AGCCTCAAGACACCGCCGAGGTA
* *
81795890 TTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTATTTTTC-AAAAAATCAACTCATATTGCGAGA-ATGAGTTGAGCCTCAAGACA
* **
81795955 -CTGAGGTATATTTCAATTTCTGTTGTCAAAAAAAATCAACTCGTATTGAGAGGCGAGTTGAGCC
64 GCTGAGGTAT-TTTCAATTTCTGTTGTCAAAAAAAATCAACTCATATTGAGAAACGAGTTGAGCC
* *
81796019 TCAGGTCACCGCCGAGGTA
128 TCAAGACACCGCCGAGGTA
**
81796038 TTTTCAATTTCCGTTTTTCAA
1 TTTTCAATTTCTATTTTTCAA
81796059 TTTCTGCCTT
Statistics
Matches: 147, Mismatches: 15, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
147 23 0.16
148 26 0.18
149 27 0.18
150 8 0.05
151 9 0.06
152 37 0.25
153 17 0.12
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (146 bp):
TTTTCAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAATGAGTTGAGCCTCAAGACAGC
TGAGGTATTTTCAATTTCTGTTGTCAAAAAAAATCAACTCATATTGAGAAACGAGTTGAGCCTCA
AGACACCGCCGAGGTA
Found at i:81795994 original size:420 final size:404
Alignment explanation
Indices: 81795208--81796002 Score: 1001
Period size: 420 Copynumber: 1.9 Consensus size: 404
81795198 TTAATTTCAA
81795208 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
81795273 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
* * *
81795338 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACTGAGGTATTTTCAATTT
131 TCAAAATCAGCTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACACTGAGGTATTTTCAATTT
*** * *
81795403 CTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAAT
196 CTGTTTTCAA--TA----GAAAAAAAATCAACTCATATTGCGAGAGGTGGGTTGAACATTTTAAT
* *
81795468 TTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTA
255 TTCTACTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACACTAAGGTA
* *
81795533 TTTTCAATTTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAAAAGTGGGTTGA
319 TTTTCAATTTCTGTTGTCAA--TA------T-AAAAATCAACTCATATTGCGAAAAGTGGGTTGA
81795598 ACCTTTTAATTTCTACTTTTTCAAAATCAG
375 ACCTTTTAATTTCTACTTTTTCAAAATCAG
81795628 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
81795693 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
* **
81795758 TCAAAATCAGCTCATATTGCGAGA-ATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTT
131 TCAAAATCAGCTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACACTGAGGTATTTTCAATTT
*
81795822 CTGTTTTCAA-A-AAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGCTG
196 CTGTTTTCAATAGAAAAAAAATCAACTCATATTGCGAG--A-G-G-TG-G------G---T--TG
**
81795885 AGGTATTTTCAATTTCTA-TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
244 A-ACATTTT-AATTTCTACTTTTTC---AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* *
81795949 AGG-ACACTGAGGTATATTTCAATTTCTGTTGTCAA-A-AAAAATCAACTCGTATTG
304 AGGCACACTAAGGTAT-TTTCAATTTCTGTTGTCAATATAAAAATCAACTCATATTG
81796003 AGAGGCGAGT
Statistics
Matches: 331, Mismatches: 21, Indels: 46
0.83 0.05 0.12
Matches are distributed among these distances:
411 20 0.06
413 1 0.00
414 1 0.00
415 1 0.00
416 3 0.01
417 1 0.00
419 44 0.13
420 169 0.51
423 1 0.00
426 1 0.00
428 4 0.01
429 10 0.03
430 18 0.05
431 18 0.05
432 39 0.12
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (404 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAGCTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACACTGAGGTATTTTCAATTT
CTGTTTTCAATAGAAAAAAAATCAACTCATATTGCGAGAGGTGGGTTGAACATTTTAATTTCTAC
TTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACTAAGGTATTTTCAA
TTTCTGTTGTCAATATAAAAATCAACTCATATTGCGAAAAGTGGGTTGAACCTTTTAATTTCTAC
TTTTTCAAAATCAG
Found at i:81796043 original size:74 final size:72
Alignment explanation
Indices: 81795760--81796054 Score: 297
Period size: 74 Copynumber: 3.9 Consensus size: 72
81795750 CTACTTTTTC
* * * * * *
81795760 AAAATCAGCTCATATTGCGAGAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTG
1 AAAATCAACTCATATTGAGAG-GTGAGTTGAGCCTC-AGGCACGCTGAGGTATTTTCAATTTCTG
81795825 TTTTCAAAAAAA
64 TTTTC---AAAA
** * *
81795837 AAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATA-T-TGAGAGGTGAGTTGAGCCTC-AGGCACGCTGAGGTATTTTCAATTTCT
*
81795902 ATTTTTC-AAA
63 -GTTTTCAAAA
*
81795912 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACTGAGGTATATTTCAATTTCT
1 AAAATCAACTCATATT--GAGAGGTGAGTTGAGCCTCAGGCACGCTGAGGTAT-TTTCAATTTCT
*
81795976 GTTGTCAAAA
63 GTTTTCAAAA
* * * *
81795986 AAAATCAACTCGTATTGAGAGGCGAGTTGAGCCTCAGGTCACCGCCGAGGTATTTTCAATTTCCG
1 AAAATCAACTCATATTGAGAGGTGAGTTGAGCCTCAGG-CA-CGCTGAGGTATTTTCAATTTCTG
81796051 TTTT
64 TTTT
81796055 TCAATTTCTG
Statistics
Matches: 190, Mismatches: 18, Indels: 23
0.82 0.08 0.10
Matches are distributed among these distances:
72 21 0.11
73 15 0.08
74 47 0.25
75 43 0.23
77 13 0.07
78 42 0.22
79 9 0.05
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (72 bp):
AAAATCAACTCATATTGAGAGGTGAGTTGAGCCTCAGGCACGCTGAGGTATTTTCAATTTCTGTT
TTCAAAA
Found at i:81801674 original size:213 final size:216
Alignment explanation
Indices: 81801299--81801695 Score: 518
Period size: 213 Copynumber: 1.9 Consensus size: 216
81801289 CATGTTTTCA
* *
81801299 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTTAGTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTAAGCCTCAGGTCACACGCTGAGGTATTTTTAATTT
* * * * *
81801364 ATATTTCAAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTT
66 ATATTTCAAAAAATTAACTCATATTGCAAGAGGTGAGTCAAGCCTCAGGACACGATGAGGTAATT
* *
81801429 TTAATTCCCGTTGTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGTTGA
131 TTAATTCCCGTTGTTTCAAAAATCAACTCATATTGCGAGAGGCGAGTTGAACCTCAAGACGTTGA
81801494 GGTAATTTCAATTTATGTTCC
196 GGTAATTTCAATTTATGTTCC
** **
81801515 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTC-GG-GGCACGCTGAGGTATTTTTAATTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTAAGCCTCAGGTCACACGCTGAGGTATTTTTAATTT
*** * **
81801578 -T-TTGT-TTTAATTTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAA
66 ATATT-TCAAAAAATT-AACTCATATTGCAAGAGGTGAGTCAAGCCTCAGGACACGATGAGGTAA
*** *
81801640 TTTTAATTTTTGTT-TTTCAAAAAATCAACTCATATTGCGAGAGGCGGGTTGAACCT
129 TTTTAATTCCCGTTGTTTC-AAAAATCAACTCATATTGCGAGAGGCGAGTTGAACCT
81801696 TTTAATTTCT
Statistics
Matches: 155, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
212 10 0.06
213 88 0.57
214 21 0.14
215 2 0.01
216 34 0.22
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (216 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTAAGCCTCAGGTCACACGCTGAGGTATTTTTAATTT
ATATTTCAAAAAATTAACTCATATTGCAAGAGGTGAGTCAAGCCTCAGGACACGATGAGGTAATT
TTAATTCCCGTTGTTTCAAAAATCAACTCATATTGCGAGAGGCGAGTTGAACCTCAAGACGTTGA
GGTAATTTCAATTTATGTTCC
Found at i:81801691 original size:74 final size:73
Alignment explanation
Indices: 81801272--81801683 Score: 389
Period size: 74 Copynumber: 5.7 Consensus size: 73
81801262 TTTGGGTACT
** **
81801272 CTGAGGT-ATCTTTAATTCATG-TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCT
1 CTGAGGTAAT-TTTAATTTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
81801335 CAGGTCACACG
65 CAGG--ACACG
* * * * ** **
81801346 CTGAGGT-ATTTTTA-GTTTATATTTCAAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCT
1 CTGAGGTAATTTTAATTTTTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
*
81801409 CAGGTCACG
65 CAGGACACG
* *** * *
81801418 CTGAGGTATTTTTAATTCCCGTTGTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCT
1 CTGAGGTAATTTTAATTTTTGTT-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
*
81801483 CA--AGACG
65 CAGGACACG
* * * * *
81801490 TTGAGGTAATTTCAATTTATG---TTCCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTC
1 CTGAGGTAATTTTAATTTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* *
81801552 GGGGCACG
66 AGGACACG
* ** *
81801560 CTGAGGTATTTTTAATTTTT-TGTTTT--AATTTCAACTCATATTGCAAGAGGTGAGTTGAGCCT
1 CTGAGGTAATTTTAATTTTTGT-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
81801622 CAGGACACG
65 CAGGACACG
*
81801631 ATGAGGTAATTTTAATTTTTGTTTTTCAAAAAATCAACTCATATTGCGAGAGG
1 CTGAGGTAATTTTAATTTTTGTTTTTC-AAAAATCAACTCATATTGCGAGAGG
81801684 CGGGTTGAAC
Statistics
Matches: 266, Mismatches: 57, Indels: 30
0.75 0.16 0.08
Matches are distributed among these distances:
68 37 0.14
70 19 0.07
71 61 0.23
72 31 0.12
73 15 0.06
74 99 0.37
75 4 0.02
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (73 bp):
CTGAGGTAATTTTAATTTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
AGGACACG
Found at i:81801865 original size:88 final size:89
Alignment explanation
Indices: 81801708--81801925 Score: 271
Period size: 88 Copynumber: 2.5 Consensus size: 89
81801698 TAATTTCTAC
* * * *
81801708 TTTTTC-AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTC
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCACAGGACACACCGAGGTATTTTC
* **
81801772 AATTTCTA-TTTTC-ATTATTATG
66 AATTTCTACTTTCCAATTACGATG
* * * **
81801794 TTTTTGAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGTCACGGGACACATTGAGGTATTTT
1 TTTTTCAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCACAGGACACACCGAGGTATTTT
* * *
81801859 CAATTTCTACTTTCCAATTCCGGTT
65 CAATTTCTACTTTCCAATTACGATG
81801884 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
81801926 TTTTAATTTC
Statistics
Matches: 111, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
86 5 0.05
87 2 0.02
88 56 0.50
89 36 0.32
90 12 0.11
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.36
Consensus pattern (89 bp):
TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCACAGGACACACCGAGGTATTTTC
AATTTCTACTTTCCAATTACGATG
Found at i:81801965 original size:54 final size:50
Alignment explanation
Indices: 81801883--81802029 Score: 172
Period size: 54 Copynumber: 2.9 Consensus size: 50
81801873 CAATTCCGGT
81801883 TTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTC
1 TTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TTT--TTTC
* * * *
81801936 TGTTTTTCAAAAAGCAACTCATATTGCGAGAGTTGAGTT-ATACC-TTTTTG
1 T-TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA-GCCTTTTTTC
* * *
81801986 TTTTTTCAAAAATTAACTCATATTGTGAGAGGTGAGTCGAGCCT
1 TTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
81802030 CAAGCCACAC
Statistics
Matches: 80, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
49 34 0.43
50 5 0.06
52 2 0.03
53 2 0.03
54 37 0.46
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (50 bp):
TTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTTTC
Found at i:81802948 original size:22 final size:22
Alignment explanation
Indices: 81802910--81802966 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
81802900 CATGAAGCAA
81802910 CCCCATACCC-CACTACAACAG
1 CCCCATACCCTCACTACAACAG
81802931 CCCCATACCCTCACTACAACAG
1 CCCCATACCCTCACTACAACAG
* *
81802953 TCCCATACCGTCAC
1 CCCCATACCCTCAC
81802967 ATGCTTCCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
21 10 0.30
22 23 0.70
ACGTcount: A:0.30, C:0.51, G:0.05, T:0.14
Consensus pattern (22 bp):
CCCCATACCCTCACTACAACAG
Found at i:81803446 original size:21 final size:20
Alignment explanation
Indices: 81803420--81803475 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 20
81803410 CAGTCCCCCC
81803420 TTTCTCCTTTCTCCTCTCCCT
1 TTTCT-CTTTCTCCTCTCCCT
*
81803441 TTTCTCTCTTCTCCTCTCCTTT
1 TTTCTCT-TTCTCCTCTCC-CT
*
81803463 TTTTTCTTTCTCC
1 TTTCTCTTTCTCC
81803476 CCTTCCCTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 2 0.06
21 22 0.71
22 7 0.23
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTCTCTTTCTCCTCTCCCT
Found at i:81803924 original size:3 final size:3
Alignment explanation
Indices: 81803916--81804007 Score: 177
Period size: 3 Copynumber: 31.0 Consensus size: 3
81803906 ATCCATGTTT
81803916 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
81803964 TTA TTA TTA TTA -TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
81804008 GGTATTAATA
Statistics
Matches: 88, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
2 2 0.02
3 86 0.98
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:81809703 original size:10 final size:10
Alignment explanation
Indices: 81809678--81809770 Score: 75
Period size: 10 Copynumber: 9.1 Consensus size: 10
81809668 TAAAAGGAAG
*
81809678 ATAATATAGGA
1 ATAATATA-TA
81809689 ATAATATATA
1 ATAATATATA
81809699 ATAATATATA
1 ATAATATATA
*
81809709 AT-ATGTGATA
1 ATAATAT-ATA
*
81809719 AAAATATA-A
1 ATAATATATA
*
81809728 ATAAAATATA
1 ATAATATATA
81809738 ATGAA-ATATA
1 AT-AATATATA
81809748 ATAATATGATA
1 ATAATAT-ATA
*
81809759 ACAATCATATA
1 ATAAT-ATATA
81809770 A
1 A
81809771 ATAAGGATAA
Statistics
Matches: 68, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
9 12 0.18
10 30 0.44
11 24 0.35
12 2 0.03
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.32
Consensus pattern (10 bp):
ATAATATATA
Found at i:81809731 original size:39 final size:42
Alignment explanation
Indices: 81809688--81809774 Score: 110
Period size: 39 Copynumber: 2.1 Consensus size: 42
81809678 ATAATATAGG
* *
81809688 AATAATATATAAT-AATATATAAT-ATGTGATAA-AA-ATATA
1 AATAAAATATAATGAA-ATATAATAATATGATAACAACATATA
81809727 AATAAAATATAATGAAATATAATAATATGATAACAATCATATA
1 AATAAAATATAATGAAATATAATAATATGATAACAA-CATATA
81809770 AATAA
1 AATAA
81809775 GGATAATATA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
39 19 0.46
40 10 0.24
41 2 0.05
43 10 0.24
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (42 bp):
AATAAAATATAATGAAATATAATAATATGATAACAACATATA
Found at i:81810251 original size:26 final size:26
Alignment explanation
Indices: 81810208--81810314 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
81810198 TGGTACAAAT
81810208 TGATAATGG-TTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
81810233 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
81810259 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
81810285 TGATAATGGATTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
81810311 TGAT
1 TGAT
81810315 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
25 9 0.12
26 68 0.88
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:81816289 original size:15 final size:15
Alignment explanation
Indices: 81816252--81816292 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
81816242 TTTAATTTTT
81816252 TATACTAATAAATAA
1 TATACTAATAAATAA
*
81816267 TA-AGTAATGAAATAA
1 TATACTAAT-AAATAA
81816282 TATA-TAATAAA
1 TATACTAATAAA
81816293 AGGAAGATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 8 0.35
15 14 0.61
16 1 0.04
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (15 bp):
TATACTAATAAATAA
Found at i:81816550 original size:13 final size:13
Alignment explanation
Indices: 81816525--81816558 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
81816515 TAAAATATAT
81816525 AATGTAT-AATAA
1 AATGTATAAATAA
*
81816537 AATTTATAAATAA
1 AATGTATAAATAA
81816550 AATGTATAA
1 AATGTATAA
81816559 TAATAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (13 bp):
AATGTATAAATAA
Found at i:81816560 original size:12 final size:12
Alignment explanation
Indices: 81816525--81816561 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
81816515 TAAAATATAT
81816525 AATGTATAATAA
1 AATGTATAATAA
*
81816537 AATTTATAAATAA
1 AATGTAT-AATAA
81816550 AATGTATAATAA
1 AATGTATAATAA
81816562 TAAAAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.35
Consensus pattern (12 bp):
AATGTATAATAA
Found at i:81816570 original size:25 final size:24
Alignment explanation
Indices: 81816517--81816584 Score: 59
Period size: 25 Copynumber: 2.8 Consensus size: 24
81816507 ATATGTAGTA
*
81816517 AAAT-ATATAATGTATAATAAAAT
1 AAATAATAAAATGTATAATAAAAT
**
81816540 TTATAAATAAAATGTATAATAATAA-
1 AAAT-AATAAAATGTATAATAA-AAT
* *
81816565 AAATAATATAATGAATAATA
1 AAATAATAAAATGTATAATA
81816585 TTTAAATAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
23 2 0.06
24 14 0.40
25 17 0.49
26 2 0.06
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (24 bp):
AAATAATAAAATGTATAATAAAAT
Found at i:81816581 original size:12 final size:12
Alignment explanation
Indices: 81816521--81816585 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
81816511 GTAGTAAAAT
81816521 ATATAATGTATA
1 ATATAATGTATA
* *
81816533 ATAAAATTTATAA
1 ATATAATGTAT-A
*
81816546 ATAAAATGTATA
1 ATATAATGTATA
**
81816558 ATAATAA-AAATA
1 AT-ATAATGTATA
*
81816570 ATATAATGAATA
1 ATATAATGTATA
81816582 ATAT
1 ATAT
81816586 TTAAATAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
11 4 0.09
12 25 0.58
13 14 0.33
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (12 bp):
ATATAATGTATA
Found at i:81818168 original size:2 final size:2
Alignment explanation
Indices: 81818163--81818192 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
81818153 AAATTAAGTA
81818163 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81818193 GAGAAGGCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81819671 original size:2 final size:2
Alignment explanation
Indices: 81819622--81819655 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
81819612 CACTTATCTC
81819622 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81819656 CATAAAGTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81820047 original size:30 final size:31
Alignment explanation
Indices: 81820012--81820077 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 31
81820002 ACAAAAATAA
81820012 ATATAAAATTAAAA-AAATGAATATTAACAAT
1 ATATAAAATTAAAACAAATGAAT-TTAACAAT
* * *
81820043 -TATAATATTAAAACAAATTAATTTAGCAAT
1 ATATAAAATTAAAACAAATGAATTTAACAAT
81820073 ATATA
1 ATATA
81820078 TATATAAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
30 19 0.63
31 11 0.37
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (31 bp):
ATATAAAATTAAAACAAATGAATTTAACAAT
Found at i:81821603 original size:43 final size:43
Alignment explanation
Indices: 81821556--81821642 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
81821546 AAGAAAGATA
81821556 CAAAGTTTGCGTTAAATAATATAATTAGAACCAAAATACCCAT
1 CAAAGTTTGCGTTAAATAATATAATTAGAACCAAAATACCCAT
81821599 CAAAGTTTGCGTTAAATAATATAATTAGAACCAAAATACCCAT
1 CAAAGTTTGCGTTAAATAATATAATTAGAACCAAAATACCCAT
81821642 C
1 C
81821643 CAACCTTAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.46, C:0.17, G:0.09, T:0.28
Consensus pattern (43 bp):
CAAAGTTTGCGTTAAATAATATAATTAGAACCAAAATACCCAT
Found at i:81821652 original size:38 final size:39
Alignment explanation
Indices: 81821567--81821652 Score: 111
Period size: 43 Copynumber: 2.1 Consensus size: 39
81821557 AAAGTTTGCG
*
81821567 TTAAATAATATAATTAGAACCAAAATACCCATCAAAGTTTGCG
1 TTAAATAATATAATTAGAACCAAAATACCCATCAAA---T-CC
*
81821610 TTAAATAATATAATTAGAACCAAAATACCCATCCAA-CC
1 TTAAATAATATAATTAGAACCAAAATACCCATCAAATCC
81821648 TTAAA
1 TTAAA
81821653 GGTTGGCTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
38 6 0.15
43 35 0.85
ACGTcount: A:0.49, C:0.19, G:0.06, T:0.27
Consensus pattern (39 bp):
TTAAATAATATAATTAGAACCAAAATACCCATCAAATCC
Found at i:81821769 original size:6 final size:6
Alignment explanation
Indices: 81821758--81821788 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
81821748 ATATTAGCGA
*
81821758 ACAAAT ACAAAT ACAAAT ACAAAT TCAAAT A
1 ACAAAT ACAAAT ACAAAT ACAAAT ACAAAT A
81821789 AGTAAATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.65, C:0.16, G:0.00, T:0.19
Consensus pattern (6 bp):
ACAAAT
Found at i:81822562 original size:37 final size:37
Alignment explanation
Indices: 81822512--81822583 Score: 119
Period size: 37 Copynumber: 1.9 Consensus size: 37
81822502 TCCTCAACAA
81822512 ATATTCAGAAGTAGCTTC-CTTTGAGTATCAATTTCTC
1 ATATTCAGAAGTAGC-TCACTTTGAGTATCAATTTCTC
*
81822549 ATATTCAGAAGTAGCTCACTTTGAGTATTAATTTC
1 ATATTCAGAAGTAGCTCACTTTGAGTATCAATTTC
81822584 CCATTCATCA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
36 2 0.06
37 31 0.94
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (37 bp):
ATATTCAGAAGTAGCTCACTTTGAGTATCAATTTCTC
Found at i:81829564 original size:16 final size:16
Alignment explanation
Indices: 81829536--81829573 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
81829526 ATAAGCAAAT
*
81829536 TATAAA-CATATAAAA
1 TATAAATCAAATAAAA
81829551 TATAAATCAAATAAAA
1 TATAAATCAAATAAAA
*
81829567 TAAAAAT
1 TATAAAT
81829574 AAAGATATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (16 bp):
TATAAATCAAATAAAA
Found at i:81829863 original size:21 final size:20
Alignment explanation
Indices: 81829839--81829906 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 20
81829829 TAATAAAATT
81829839 TATAAACAAAATATATAATGA
1 TATAAACAAAATATATAAT-A
*
81829860 TATAAACAATATGATAGATAATA
1 TATAAACAA-A--ATATATAATA
*
81829883 TATAAA-ATAATATATATATA
1 TATAAACAAAATATATA-ATA
81829903 TATA
1 TATA
81829907 GTAAAATGTA
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
19 6 0.15
20 7 0.17
21 10 0.25
22 2 0.05
23 7 0.17
24 8 0.20
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.34
Consensus pattern (20 bp):
TATAAACAAAATATATAATA
Found at i:81829892 original size:12 final size:12
Alignment explanation
Indices: 81829877--81829962 Score: 53
Period size: 12 Copynumber: 7.7 Consensus size: 12
81829867 AATATGATAG
81829877 ATAATATATAAA
1 ATAATATATAAA
*
81829889 ATAATATAT-AT
1 ATAATATATAAA
81829900 AT-ATATAGTAAA
1 ATAATATA-TAAA
* * *
81829912 AT-GTATGTAAT
1 ATAATATATAAA
81829923 ATAATATAT--A
1 ATAATATATAAA
*
81829933 ATAATGTAT--A
1 ATAATATATAAA
81829943 ATAATATA-ATAA
1 ATAATATATA-AA
81829955 ATAATATA
1 ATAATATA
81829963 CAAATATAAA
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
10 21 0.36
11 9 0.16
12 28 0.48
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (12 bp):
ATAATATATAAA
Found at i:81829942 original size:10 final size:10
Alignment explanation
Indices: 81829848--81829962 Score: 65
Period size: 10 Copynumber: 10.6 Consensus size: 10
81829838 TTATAAACAA
81829848 AATATATAAT
1 AATATATAAT
* *
81829858 GATATA-AAC
1 AATATATAAT
81829867 AATATGATAGAT
1 AATAT-ATA-AT
81829879 AATATATAA-
1 AATATATAAT
81829888 AATAATATATAT
1 AAT-ATATA-AT
81829900 ATATATAGTAA-
1 A-ATATA-TAAT
*
81829911 AATGTATGTAATAT
1 AA--TATAT-A-AT
81829925 AATATATAAT
1 AATATATAAT
*
81829935 AATGTATAAT
1 AATATATAAT
81829945 AATATAATAAAT
1 AATAT-AT-AAT
81829957 AATATA
1 AATATA
81829963 CAAATATAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 29
0.69 0.07 0.24
Matches are distributed among these distances:
9 9 0.11
10 28 0.34
11 11 0.13
12 27 0.33
13 5 0.06
14 2 0.02
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.37
Consensus pattern (10 bp):
AATATATAAT
Found at i:81829947 original size:25 final size:25
Alignment explanation
Indices: 81829889--81829960 Score: 85
Period size: 25 Copynumber: 2.8 Consensus size: 25
81829879 AATATATAAA
81829889 ATAATATATATATATATAGTAA-AATGT
1 ATAATA-ATATA-ATATA-TAATAATGT
*
81829916 AT-GTAATATAATATATAATAATGT
1 ATAATAATATAATATATAATAATGT
*
81829940 ATAATAATATAATAAATAATA
1 ATAATAATATAATATATAATA
81829961 TACAAATATA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
23 3 0.08
24 12 0.30
25 21 0.52
26 2 0.05
27 2 0.05
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (25 bp):
ATAATAATATAATATATAATAATGT
Found at i:81829962 original size:20 final size:19
Alignment explanation
Indices: 81829919--81829971 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
81829909 AAAATGTATG
81829919 TAATATAAT-ATATAATAA
1 TAATATAATAATATAATAA
*
81829937 T-GTATAATAATATAATAAA
1 TAATATAATAATATAAT-AA
81829956 TAATATACA-AATATAA
1 TAATATA-ATAATATAA
81829972 ATACTATATG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
17 6 0.21
18 8 0.28
19 3 0.10
20 11 0.38
21 1 0.03
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (19 bp):
TAATATAATAATATAATAA
Found at i:81833359 original size:47 final size:47
Alignment explanation
Indices: 81833296--81833425 Score: 163
Period size: 47 Copynumber: 2.8 Consensus size: 47
81833286 GTGCGAATAA
* * *** *
81833296 TACCTTGATTCT-GCTACGGGCCATGATATAGGTATTTTGAGAGGAGC
1 TACCTTGATT-TGGCTACGGGCCATGGTATAGGTACTCCAAGAGAAGC
* *
81833343 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAAGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAAGAGAAGC
*
81833390 TACCTTGATTTGCCTACGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
81833426 TATCGATTGT
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
46 1 0.01
47 72 0.99
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAAGAGAAGC
Found at i:81834141 original size:2 final size:2
Alignment explanation
Indices: 81834094--81834130 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
81834084 TTGGTTGATG
81834094 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
81834131 GCTTGATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:81837816 original size:49 final size:49
Alignment explanation
Indices: 81837717--81837816 Score: 114
Period size: 49 Copynumber: 2.0 Consensus size: 49
81837707 GTATTTTATT
* * * * * *
81837717 TTAGAATAAGGTTTTTCAACTTTATTACACTTCATCTATTTAATATTGA
1 TTAGAATAAGATGTTTCAACCTCACTACACTTCATCTATTGAATATTGA
81837766 TTAGAATAAGATGTTTCAACCTCACTACAC-TCATTCTATTAGAATA-TGA
1 TTAGAATAAGATGTTTCAACCTCACTACACTTCA-TCTATT-GAATATTGA
81837815 TT
1 TT
81837817 TTACAAGTCT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
48 3 0.07
49 36 0.84
50 4 0.09
ACGTcount: A:0.34, C:0.15, G:0.09, T:0.42
Consensus pattern (49 bp):
TTAGAATAAGATGTTTCAACCTCACTACACTTCATCTATTGAATATTGA
Found at i:81843509 original size:30 final size:32
Alignment explanation
Indices: 81843464--81843528 Score: 89
Period size: 30 Copynumber: 2.1 Consensus size: 32
81843454 GTACAAAATC
*
81843464 AAAGTTCATGCATAATATT-CAAATTAAA-CA
1 AAAGCTCATGCATAATATTACAAATTAAACCA
* *
81843494 AAAGCTCATGTATAATATTACGAATTAAACCA
1 AAAGCTCATGCATAATATTACAAATTAAACCA
81843526 AAA
1 AAA
81843529 TTTATGTGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
30 17 0.57
31 8 0.27
32 5 0.17
ACGTcount: A:0.51, C:0.14, G:0.08, T:0.28
Consensus pattern (32 bp):
AAAGCTCATGCATAATATTACAAATTAAACCA
Found at i:81846968 original size:16 final size:17
Alignment explanation
Indices: 81846947--81846997 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
81846937 ACTTTTTAAT
81846947 AATTTTTT-AATTTTAG
1 AATTTTTTAAATTTTAG
*
81846963 AATTTTTTAAATTTTAAA
1 AATTTTTTAAATTTT-AG
*
81846981 AATAATTTTAAATTTTA
1 AAT-TTTTTAAATTTTA
81846998 TCATTTTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 8 0.27
17 6 0.20
18 5 0.17
19 11 0.37
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (17 bp):
AATTTTTTAAATTTTAG
Found at i:81848587 original size:15 final size:15
Alignment explanation
Indices: 81848562--81848600 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
81848552 TCAAACTTCT
81848562 TTGTT-TTTGTTTTG
1 TTGTTGTTTGTTTTG
*
81848576 TTGTTGTTTGTTTTT
1 TTGTTGTTTGTTTTG
81848591 TTGTTTGTTT
1 TTG-TTGTTT
81848601 TCTCTTTGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 5 0.23
15 11 0.50
16 6 0.27
ACGTcount: A:0.00, C:0.00, G:0.21, T:0.79
Consensus pattern (15 bp):
TTGTTGTTTGTTTTG
Found at i:81850641 original size:43 final size:43
Alignment explanation
Indices: 81850532--81850643 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 43
81850522 AAACTCATTA
* * * * *
81850532 AGTGGTTCGAGTTCGTGATATATGTG-GCATCCGAGCTCGTTG
1 AGTGGTCCGAGTTCATAATAGATGCGAGCATCCGAGCTCGTTG
* *
81850574 AGTGGTCCGAGTTCATTATGGATGCGAGCATCCGAGCTCGTTG
1 AGTGGTCCGAGTTCATAATAGATGCGAGCATCCGAGCTCGTTG
* *
81850617 AGTGGTCTGAGTTCCTAATAGATGCGA
1 AGTGGTCCGAGTTCATAATAGATGCGA
81850644 TACATGTGAT
Statistics
Matches: 59, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
42 20 0.34
43 39 0.66
ACGTcount: A:0.20, C:0.18, G:0.32, T:0.30
Consensus pattern (43 bp):
AGTGGTCCGAGTTCATAATAGATGCGAGCATCCGAGCTCGTTG
Found at i:81853120 original size:38 final size:38
Alignment explanation
Indices: 81853063--81853165 Score: 134
Period size: 38 Copynumber: 2.7 Consensus size: 38
81853053 ATGTTATTAG
* **
81853063 GGCTATGTGCCTAGTAGGCTTTGTGTTGGTGATATTCA
1 GGCTATGTGCCTAGCAGGCTTTGTGCCGGTGATATTCA
* * * **
81853101 GGCTGTGTGCCTAGCAGGCTATGTGCCGGTGATGTTTG
1 GGCTATGTGCCTAGCAGGCTTTGTGCCGGTGATATTCA
81853139 GGCTATGTGCCTAGCAGGCTTTGTGCC
1 GGCTATGTGCCTAGCAGGCTTTGTGCC
81853166 AATGTATTGA
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 55 1.00
ACGTcount: A:0.13, C:0.18, G:0.35, T:0.34
Consensus pattern (38 bp):
GGCTATGTGCCTAGCAGGCTTTGTGCCGGTGATATTCA
Found at i:81858422 original size:35 final size:35
Alignment explanation
Indices: 81858376--81858446 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
81858366 TATATATGTA
*
81858376 TGAATTTAGTATCTAGTAAGACTTTGCCTATAGAG
1 TGAATTTAGTATCTAGTAAGACTTTGACTATAGAG
*
81858411 TGAATTTAGTATCTAGTAAGACTTTGACTGTAGAG
1 TGAATTTAGTATCTAGTAAGACTTTGACTATAGAG
81858446 T
1 T
81858447 CTACTGAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (35 bp):
TGAATTTAGTATCTAGTAAGACTTTGACTATAGAG
Found at i:81865219 original size:18 final size:19
Alignment explanation
Indices: 81865183--81865220 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
81865173 ACTCATTTCT
* *
81865183 TAATTAATTATTTTGACTG
1 TAATTAATTATCTTAACTG
81865202 TAATT-ATTATCTTAACTG
1 TAATTAATTATCTTAACTG
81865220 T
1 T
81865221 TCTCTTGGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.53
Consensus pattern (19 bp):
TAATTAATTATCTTAACTG
Found at i:81865928 original size:24 final size:24
Alignment explanation
Indices: 81865901--81865948 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
81865891 GTAGTCGGTG
81865901 TAAGAAAGCCCCTTTTAACCTAGA
1 TAAGAAAGCCCCTTTTAACCTAGA
*
81865925 TAAGAAAGCCCCTTTTAGCCTAGA
1 TAAGAAAGCCCCTTTTAACCTAGA
81865949 CAAAGTGCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (24 bp):
TAAGAAAGCCCCTTTTAACCTAGA
Found at i:81869170 original size:43 final size:42
Alignment explanation
Indices: 81869121--81869268 Score: 147
Period size: 43 Copynumber: 3.5 Consensus size: 42
81869111 GATTACCAAG
81869121 ATGTGATTACATGTAAGACCATGTCTAGGACAGTGGCATTG-T
1 ATGTGATTACATGTAAGACCATGTCT-GGACAGTGGCATTGAT
** * *
81869163 ATTGTGATTATGTGTAAGACCATGTCTGGGACATTGGC-TTCATT
1 A-TGTGATTACATGTAAGACCATGTCT-GGACAGTGGCATTGA-T
* * * * *
81869207 ATATGATTTCGTGTAAGACCCTGTCTGAGACAGTGGCATCGAT
1 ATGTGATTACATGTAAGACCATGTCTG-GACAGTGGCATTGAT
*
81869250 ATGTGATAACATGTAAGAC
1 ATGTGATTACATGTAAGAC
81869269 TATATCTGAG
Statistics
Matches: 85, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
42 4 0.05
43 77 0.91
44 4 0.05
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (42 bp):
ATGTGATTACATGTAAGACCATGTCTGGACAGTGGCATTGAT
Found at i:81871770 original size:130 final size:130
Alignment explanation
Indices: 81871467--81871887 Score: 470
Period size: 131 Copynumber: 3.2 Consensus size: 130
81871457 TGGCAATTCA
** * ** * * ** ** *
81871467 CGAG-ATCGTGCCCTAACGTGTTGGGTTGCAATCTCTCATTTGCTCAAAGTAATCGAAGGTCCCT
1 CGAGAATCGTGCCCTATTGTGCTGGGTTGTGATTTCTCATTTGTTCAAAACAATCGAATATTCCT
** * ** ** * * * *
81871531 TTAGAATTTCACCCATGTCTTTTAAAAATTCT-TTAAACGAAGGCGGTATTCGATATTTAACGAT
66 TTAGGTTTTCACTCATG-CTTTTAAAAATTCTCCAAAACGAAGGCAATACTCGATGTTTAGCAAT
81871595 T
130 T
81871596 CGTAGAATCGTGCCCTATTGTGCTGGGTTGTGATTTCTCATTTGTTCAAAACAATCGAATATTCC
1 CG-AGAATCGTGCCCTATTGTGCTGGGTTGTGATTTCTCATTTGTTCAAAACAATCGAATATTCC
*
81871661 TTTAGGTTTTCACTCATGCTTTTAAAAATTCTCCAAAACGAAGGCAATACTCGGTGTTTAGCAAT
65 TTTAGGTTTTCACTCATGCTTTTAAAAATTCTCCAAAACGAAGGCAATACTCGATGTTTAGCAAT
81871726 T
130 T
* ** *
81871727 CGAGAATCATGCCCTATTGTGCTGGGTTGTGATTTCTTGTTTGTTCAAAACAATCGGATATTCCT
1 CGAGAATCGTGCCCTATTGTGCTGGGTTGTGATTTCTCATTTGTTCAAAACAATCGAATATTCCT
* *
81871792 TTA-GTTTATCACTCATGCTTTTAAAAAATTCTCCAAAACGAAGGTAATACTCGATGTTTAGGAA
66 TTAGGTTT-TCACTCATGCTTTT-AAAAATTCTCCAAAACGAAGGCAATACTCGATGTTTA-GCA
*
81871856 ATC
128 ATT
* *
81871859 CGAGGAATCGTGCCCTACTGTGTTGGGTT
1 CGA-GAATCGTGCCCTATTGTGCTGGGTT
81871888 TCAGTTTTTC
Statistics
Matches: 250, Mismatches: 35, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
129 6 0.02
130 92 0.37
131 123 0.49
132 7 0.03
133 22 0.09
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (130 bp):
CGAGAATCGTGCCCTATTGTGCTGGGTTGTGATTTCTCATTTGTTCAAAACAATCGAATATTCCT
TTAGGTTTTCACTCATGCTTTTAAAAATTCTCCAAAACGAAGGCAATACTCGATGTTTAGCAATT
Found at i:81871924 original size:131 final size:130
Alignment explanation
Indices: 81871528--81871887 Score: 339
Period size: 130 Copynumber: 2.7 Consensus size: 130
81871518 ATCGAAGGTC
** * ** ** * *
81871528 CCTTTAGAATTTCACCCATGTCTTTTAAAAATTCT-TTAAACGAAGGCGGTATTCGATATTTA-A
1 CCTTTAGGTTTTCACTCATG-CTTTTAAAAATTCTCCAAAACGAAGGCAATACTCGATGTTTAGA
* * * * * ** ** * * *
81871591 CGATTCGTAGAATCGTGCCCTATTGTGCTGGGTTGTGATTTCTCATTTGTTCAAAACAATCGAAT
65 -AATCCG-AGAATCATGCCCTACTGTGCTGGGTTGTCATTTCTTGTTTGGACAAAACAATAGGAC
81871656 ATT
128 ATT
* *
81871659 CCTTTAGGTTTTCACTCATGCTTTTAAAAATTCTCCAAAACGAAGGCAATACTCGGTGTTTAGCA
1 CCTTTAGGTTTTCACTCATGCTTTTAAAAATTCTCCAAAACGAAGGCAATACTCGATGTTTAGAA
* * * ** * *
81871724 ATTCGAGAATCATGCCCTATTGTGCTGGGTTGTGATTTCTTGTTTGTTCAAAACAATCGGATATT
66 ATCCGAGAATCATGCCCTACTGTGCTGGGTTGTCATTTCTTGTTTGGACAAAACAATAGGACATT
*
81871789 CCTTTA-GTTTATCACTCATGCTTTTAAAAAATTCTCCAAAACGAAGGTAATACTCGATGTTTAG
1 CCTTTAGGTTT-TCACTCATGCTTTT-AAAAATTCTCCAAAACGAAGGCAATACTCGATGTTTA-
* *
81871853 GAAATCCGAGGAATCGTGCCCTACTGTGTTGGGTT
63 GAAATCCGA-GAATCATGCCCTACTGTGCTGGGTT
81871888 TCAGTTTTTC
Statistics
Matches: 200, Mismatches: 23, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
129 4 0.02
130 90 0.45
131 77 0.38
132 7 0.04
133 22 0.11
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (130 bp):
CCTTTAGGTTTTCACTCATGCTTTTAAAAATTCTCCAAAACGAAGGCAATACTCGATGTTTAGAA
ATCCGAGAATCATGCCCTACTGTGCTGGGTTGTCATTTCTTGTTTGGACAAAACAATAGGACATT
Found at i:81880136 original size:2 final size:2
Alignment explanation
Indices: 81880129--81880159 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
81880119 ATAACACTTA
81880129 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
81880160 AATTGTAAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:81886561 original size:40 final size:39
Alignment explanation
Indices: 81886396--81886579 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
81886386 AAATTGAATG
* * *
81886396 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
81886436 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
81886476 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
81886516 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
81886555 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
81886580 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:81886604 original size:80 final size:81
Alignment explanation
Indices: 81886436--81886624 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
81886426 GCTGGAAATT
* * * *
81886436 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
81886501 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
81886517 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
81886580 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
81886596 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
81886625 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:81893949 original size:39 final size:39
Alignment explanation
Indices: 81893906--81894011 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 39
81893896 GAAATTATAA
* *
81893906 CCGGGTTAAGACCGAAGGCAATTGTGCTAGTGGC-TAC-AT
1 CCGGGCTAAGACCGAAGGCAATTGTGCGAGT--CATACTAT
*
81893945 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTCTAT
1 CCGGGCTAAGA-CCGAAGGCAATT-GTGCGAGTCATACTAT
*
81893985 CCGGGCTAAGACCGAAGGCATTTGTGC
1 CCGGGCTAAGACCGAAGGCAATTGTGC
81894012 AAAGTGATAT
Statistics
Matches: 58, Mismatches: 4, Indels: 10
0.81 0.06 0.14
Matches are distributed among these distances:
38 1 0.02
39 27 0.47
40 30 0.52
ACGTcount: A:0.24, C:0.25, G:0.30, T:0.22
Consensus pattern (39 bp):
CCGGGCTAAGACCGAAGGCAATTGTGCGAGTCATACTAT
Found at i:81901958 original size:40 final size:39
Alignment explanation
Indices: 81901793--81901976 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
81901783 AAATTGAATG
* * *
81901793 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
81901833 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
81901873 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
81901913 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
81901952 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
81901977 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:81902001 original size:80 final size:81
Alignment explanation
Indices: 81901833--81902021 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
81901823 GCTGGAAATT
* * * *
81901833 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
81901898 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
81901914 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
81901977 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
81901993 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
81902022 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:81910289 original size:21 final size:21
Alignment explanation
Indices: 81910265--81910314 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
81910255 GATTATATAA
81910265 TTTGGATTTATAAACTTTATG
1 TTTGGATTTATAAACTTTATG
81910286 TTTGGATTTATAAACTTTATG
1 TTTGGATTTATAAACTTTATG
*
81910307 TTTTGATT
1 TTTGGATT
81910315 ATACTATAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.26, C:0.04, G:0.14, T:0.56
Consensus pattern (21 bp):
TTTGGATTTATAAACTTTATG
Found at i:81920986 original size:20 final size:21
Alignment explanation
Indices: 81920963--81921004 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
81920953 TCCGCTATTA
81920963 TTATGCGAACTATGTT-TTAT
1 TTATGCGAACTATGTTCTTAT
* *
81920983 TTATGTGAGCTATGTTCTTAT
1 TTATGCGAACTATGTTCTTAT
81921004 T
1 T
81921005 CAAATTATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.21, C:0.10, G:0.17, T:0.52
Consensus pattern (21 bp):
TTATGCGAACTATGTTCTTAT
Found at i:81924235 original size:42 final size:42
Alignment explanation
Indices: 81924171--81924259 Score: 133
Period size: 42 Copynumber: 2.1 Consensus size: 42
81924161 TCCTAATTGG
* *
81924171 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAATATAAAA
1 GAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
* *
81924213 GAAAATAGTTTCCTTGTCCTAATAAACTACTAAAAGATAAAA
1 GAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
*
81924255 TAAAA
1 GAAAA
81924260 ATATTCCTAG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.51, C:0.13, G:0.07, T:0.29
Consensus pattern (42 bp):
GAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
Found at i:81924306 original size:19 final size:18
Alignment explanation
Indices: 81924284--81924323 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
81924274 TGAATAAAAC
81924284 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
81924303 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
81924321 TTA
1 TTA
81924324 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:81928166 original size:42 final size:42
Alignment explanation
Indices: 81928102--81928190 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
81928092 TCCTAATTGG
* *
81928102 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAATATAAAA
1 GAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
*
81928144 GAAAATAGTTCCCTTGTCCTAATAAACTACTAAAAGATAAAA
1 GAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
*
81928186 TAAAA
1 GAAAA
81928191 ATATTCCTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.51, C:0.15, G:0.07, T:0.28
Consensus pattern (42 bp):
GAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
Found at i:81928237 original size:19 final size:18
Alignment explanation
Indices: 81928215--81928254 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
81928205 TGAATAAAAC
*
81928215 TTATCTACTTAAATAAGAT
1 TTATCTACCTAAATAA-AT
81928234 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
81928252 TTA
1 TTA
81928255 AAATATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.42, C:0.12, G:0.03, T:0.42
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:81930725 original size:2 final size:2
Alignment explanation
Indices: 81930714--81930754 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
81930704 ACTTTAATAC
*
81930714 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT CT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81930755 CCCTTTCAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:81935073 original size:46 final size:46
Alignment explanation
Indices: 81935023--81935195 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
81935013 TGGTTGAGCA
*
81935023 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
81935069 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
81935116 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
81935162 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
81935196 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 62 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:81935179 original size:93 final size:93
Alignment explanation
Indices: 81935020--81935190 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
81935010 GGATGGTTGA
***
81935020 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
81935085 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
81935113 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
81935178 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
81935191 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81935456 original size:19 final size:20
Alignment explanation
Indices: 81935419--81935456 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
81935409 ATAAGGTGGT
81935419 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
81935439 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
81935457 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:81942647 original size:45 final size:44
Alignment explanation
Indices: 81942598--81942763 Score: 162
Period size: 45 Copynumber: 3.7 Consensus size: 44
81942588 GTTGAGCATC
81942598 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA-ATGT
1 CGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGTAACA-GT
* *
81942643 CGAACTCGTTGAGTTGAGTCGAGTTC-GTGA--GATGTAACTAGGCAT
1 CGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGTAAC-A-G--T
* * **
81942688 CCGAACTCGTTGAGTTGAGTCGAGTTCATTTATGGATGCGAACACC
1 -CGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATG-TAACAGT
*
81942734 CGAGCTCGTTGAGTTGAGT-GAGTTCACTTA
1 CGAACTCGTTGAGTTGAGTCGAGTTCACTTA
81942764 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 10, Indels: 19
0.78 0.08 0.15
Matches are distributed among these distances:
41 7 0.07
43 4 0.04
44 17 0.17
45 38 0.37
46 26 0.25
47 2 0.02
49 5 0.05
50 3 0.03
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.31
Consensus pattern (44 bp):
CGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGTAACAGT
Found at i:81942748 original size:91 final size:90
Alignment explanation
Indices: 81942593--81942758 Score: 246
Period size: 91 Copynumber: 1.8 Consensus size: 90
81942583 GGATGGTTGA
* **
81942593 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATGTCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAATCCCGAACTCGTTGAGTT
81942658 GAGTCGAGTTCGTGAGATGTAACTAG
66 GAGT-GAGTTCGTGAGATGTAACTAG
* *
81942684 GCATCCGAACTCGTTGAGTTGAGT-CGAGTTCATTTATGGATGCGAACA-CCCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-ATCCCGAACTCGTTGAG
81942747 TTGAGTGAGTTC
64 TTGAGTGAGTTC
81942759 ACTTAGGGGC
Statistics
Matches: 68, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
90 23 0.34
91 44 0.65
92 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (90 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAATCCCGAACTCGTTGAGTT
GAGTGAGTTCGTGAGATGTAACTAG
Found at i:81943023 original size:19 final size:20
Alignment explanation
Indices: 81942986--81943023 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
81942976 ATAAGGTGGT
81942986 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
81943006 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
81943024 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:81947819 original size:26 final size:26
Alignment explanation
Indices: 81947789--81948150 Score: 107
Period size: 27 Copynumber: 14.0 Consensus size: 26
81947779 GTTAGATTTT
81947789 AATTAAGATAATTAGAGTTTAAATTA
1 AATTAAGATAATTAGAGTTTAAATTA
* * * *
81947815 AATTAGGATAATTAAAATTTTAATTTA
1 AATTAAGATAATT-AGAGTTTAAATTA
*
81947842 AA-TAAGATAATTAGGAATTT-AATTA
1 AATTAAGATAATTA-GAGTTTAAATTA
* * *
81947867 ATAGGTT-GGATAA-TA-A-TTTAGATTTT
1 A-A--TTAAGATAATTAGAGTTTA-AATTA
* * * *
81947893 AGTTAAGGTAAGTAGGTGTTTAAATTA
1 AATTAAGATAATTA-GAGTTTAAATTA
* *
81947920 AATT-AGAATAATTAGAGTTCAAATTT
1 AATTAAG-ATAATTAGAGTTTAAATTA
* * *
81947946 ATTTAAGATTATTA-A---TAATTTA
1 AATTAAGATAATTAGAGTTTAAATTA
* * *
81947968 AATTAAAAT-ATTAG-GTAATAATTTA
1 AATTAAGATAATTAGAGT-TTAAATTA
* * *
81947993 GATTTAGATAATTATGAGTTTAAATTG
1 AATTAAGATAATTA-GAGTTTAAATTA
* * *
81948020 AATTAGGATAATTAGAATTTTAATTTA
1 AATTAAGATAATTAG-AGTTTAAATTA
* *
81948047 GA-TAATGA-AATTAGGAATTT-AATTAA
1 AATTAA-GATAATTA-GAGTTTAAATT-A
* *
81948073 CAGATT-AGATAA-TA-A-TTTAGATTT
1 -A-ATTAAGATAATTAGAGTTTAAATTA
* *
81948097 AGTTAAGATAATTAGAATTTTAAATTA
1 AATTAAGATAATTAG-AGTTTAAATTA
* * * *
81948124 AGTTAGGATGATTAGAGTTTTAATTA
1 AATTAAGATAATTAGAGTTTAAATTA
81948150 A
1 A
81948151 TTTTAAAAAA
Statistics
Matches: 243, Mismatches: 56, Indels: 74
0.65 0.15 0.20
Matches are distributed among these distances:
21 4 0.02
22 13 0.05
23 9 0.04
24 12 0.05
25 30 0.12
26 78 0.32
27 80 0.33
28 15 0.06
29 2 0.01
ACGTcount: A:0.44, C:0.01, G:0.14, T:0.41
Consensus pattern (26 bp):
AATTAAGATAATTAGAGTTTAAATTA
Found at i:81947837 original size:93 final size:93
Alignment explanation
Indices: 81947696--81947873 Score: 225
Period size: 93 Copynumber: 1.9 Consensus size: 93
81947686 TTTTGTGTAG
* * * * **
81947696 ATTAAGGTAATTAGGAGTTTAAAATATATAACGATGATTAGAGATTTAATTTAGTTAAGACAATT
1 ATTAAGATAATTAGGAGTTTAAAATAAATAACGATAATTAGAAATTTAATTTAAATAAGACAATT
81947761 AAGAATTTAAATTAATAGGTTAGATTTTA
66 AAGAATTT-AATTAATAGGTTAGATTTTA
* * * *
81947790 ATTAAGATAATTA-GAGTTTAAATTAAATTAGGATAATTA-AAATTTTAATTTAAATAAGATAAT
1 ATTAAGATAATTAGGAGTTTAAAATAAATAACGATAATTAGAAA-TTTAATTTAAATAAGACAAT
*
81947853 TAGGAATTTAATTAATAGGTT
65 TAAGAATTTAATTAATAGGTT
81947874 GGATAATAAT
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
92 14 0.19
93 46 0.64
94 12 0.17
ACGTcount: A:0.46, C:0.01, G:0.14, T:0.39
Consensus pattern (93 bp):
ATTAAGATAATTAGGAGTTTAAAATAAATAACGATAATTAGAAATTTAATTTAAATAAGACAATT
AAGAATTTAATTAATAGGTTAGATTTTA
Found at i:81947923 original size:105 final size:106
Alignment explanation
Indices: 81947780--81948224 Score: 459
Period size: 105 Copynumber: 4.3 Consensus size: 106
81947770 AATTAATAGG
* *
81947780 TTAGATTTTAATTAAGATAATTA-GAGTTTAAATTAAATTAGGATAATTAAAATTTTAATTTAAA
1 TTAGATTTTAGTTAAGATAATTAGGAGTTTAAATTAAATTAGGATAATTAGAATTTTAATTTAAA
* * *
81947844 TAAGATAATTAGGAATTT-AATTAATAGGTTGGATAATAAT
66 TAAGATAATTAAGAATTTAAATTAATAGATTAGATAATAAT
* * * * * ** **
81947884 TTAGATTTTAGTTAAGGTAAGTAGGTGTTTAAATTAAATTAGAATAATTAGAGTTCAAATTTATT
1 TTAGATTTTAGTTAAGATAATTAGGAGTTTAAATTAAATTAGGATAATTAGAATTTTAATTTAAA
* * * * *
81947949 TAAGATTATTAATAATTTAAATTAAAATATTAGGTAATAAT
66 TAAGATAATTAAGAATTTAAATTAATAGATTAGATAATAAT
* * *
81947990 TTAGA---T--TT-AGATAATTATGAGTTTAAATTGAATTAGGATAATTAGAATTTTAATTTAGA
1 TTAGATTTTAGTTAAGATAATTAGGAGTTTAAATTAAATTAGGATAATTAGAATTTTAATTTAAA
* *
81948049 TAATGA-AATTAGGAATTT-AATTAACAGATTAGATAATAAT
66 TAA-GATAATTAAGAATTTAAATTAATAGATTAGATAATAAT
* * * * *
81948089 TTAGA-TTTAGTTAAGATAATTAGAATTTTAAATTAAGTTAGGATGATTAGAGTTTTAA-TTAAT
1 TTAGATTTTAGTTAAGATAATTAGGAGTTTAAATTAAATTAGGATAATTAGAATTTTAATTTAA-
* * * *
81948152 TTTAA-AAAATTAATAATTTAAATCAATAGATTAGATAATAAT
65 -ATAAGATAATTAAGAATTTAAATTAATAGATTAGATAATAAT
81948194 TTAGATTTTAGTTAAGATAATTCA-GAGTTTA
1 TTAGATTTTAGTTAAGATAATT-AGGAGTTTA
81948225 GGGTTCCTCG
Statistics
Matches: 276, Mismatches: 51, Indels: 26
0.78 0.14 0.07
Matches are distributed among these distances:
99 24 0.09
100 52 0.19
101 5 0.02
103 7 0.03
104 68 0.25
105 76 0.28
106 43 0.16
107 1 0.00
ACGTcount: A:0.44, C:0.01, G:0.13, T:0.42
Consensus pattern (106 bp):
TTAGATTTTAGTTAAGATAATTAGGAGTTTAAATTAAATTAGGATAATTAGAATTTTAATTTAAA
TAAGATAATTAAGAATTTAAATTAATAGATTAGATAATAAT
Found at i:81948193 original size:204 final size:203
Alignment explanation
Indices: 81947728--81948201 Score: 597
Period size: 204 Copynumber: 2.3 Consensus size: 203
81947718 AATATATAAC
* * * * *
81947728 GATGATTAGAGATTTAATTTAGTTAAGACAATTAAGAATTTAAATTAATAGGTTAG--AT--TTT
1 GATGATTAGAGTTTTAATTTATTTAAGAAAATTAATAATTTAAATTAATAGATTAGTAATAATTT
*
81947789 A-ATTAAGATAATTAGAGTTTAAATTAAATTAGGATAATTAAAATTTTAATTTAAATAAGATAAT
66 AGATTTAGATAATTAGAGTTTAAATTAAATTAGGATAATTAAAATTTTAATTTAAATAAGATAAT
* * * * *
81947853 TAGGAATTTAATTAATAGGTTGGATAATAATTTAGATTTTAGTTAAGGTAAGTAGGTGTTTAAAT
131 TAGGAATTTAATTAACAGATTAGATAATAATTTAGATTTTAGTTAAGATAAGTAGATGTTTAAAT
81947918 TAAATTAG
196 TAAATTAG
* * ** ** * *
81947926 AATAATTAGAGTTCAAATTTATTTAAGATTATTAATAATTTAAATTAAAATATTAGGTAATAATT
1 GATGATTAGAGTTTTAATTTATTTAAGAAAATTAATAATTTAAATTAATAGATTA-GTAATAATT
* * *
81947991 TAGATTTAGATAATTATGAGTTTAAATTGAATTAGGATAATTAGAATTTTAATTTAGATAATGA-
65 TAGATTTAGATAATTA-GAGTTTAAATTAAATTAGGATAATTAAAATTTTAATTTAAATAA-GAT
*
81948055 AATTAGGAATTTAATTAACAGATTAGATAATAATTTAGA-TTTAGTTAAGATAATTAGAAT-TTT
128 AATTAGGAATTTAATTAACAGATTAGATAATAATTTAGATTTTAGTTAAGATAAGTAG-ATGTTT
*
81948118 AAATTAAGTTAG
192 AAATTAAATTAG
* *
81948130 GATGATTAGAGTTTTAATTAATTTTAA-AAAATTAATAATTTAAATCAATAGATTAGATAATAAT
1 GATGATTAGAGTTTTAATTTA-TTTAAGAAAATTAATAATTTAAATTAATAGATTAG-TAATAAT
81948194 TTAGATTT
64 TTAGATTT
81948202 TAGTTAAGAT
Statistics
Matches: 232, Mismatches: 33, Indels: 16
0.83 0.12 0.06
Matches are distributed among these distances:
198 43 0.19
199 1 0.00
201 2 0.01
203 5 0.02
204 96 0.41
205 83 0.36
206 2 0.01
ACGTcount: A:0.45, C:0.01, G:0.13, T:0.41
Consensus pattern (203 bp):
GATGATTAGAGTTTTAATTTATTTAAGAAAATTAATAATTTAAATTAATAGATTAGTAATAATTT
AGATTTAGATAATTAGAGTTTAAATTAAATTAGGATAATTAAAATTTTAATTTAAATAAGATAAT
TAGGAATTTAATTAACAGATTAGATAATAATTTAGATTTTAGTTAAGATAAGTAGATGTTTAAAT
TAAATTAG
Found at i:81948437 original size:17 final size:19
Alignment explanation
Indices: 81948408--81948444 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
81948398 TTTCCGTTGC
81948408 ACATTGCTTTGAAA-ATCA
1 ACATTGCTTTGAAACATCA
81948426 ACATTG-TTTGAAACATCA
1 ACATTGCTTTGAAACATCA
81948444 A
1 A
81948445 AATATTAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.32
Consensus pattern (19 bp):
ACATTGCTTTGAAACATCA
Found at i:81949469 original size:6 final size:6
Alignment explanation
Indices: 81949460--81949484 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
81949450 AAGAAATTGA
81949460 AAGTGG AAGTGG AAGTGG AAGTGG A
1 AAGTGG AAGTGG AAGTGG AAGTGG A
81949485 GAAAGTGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.48, T:0.16
Consensus pattern (6 bp):
AAGTGG
Found at i:81951389 original size:53 final size:52
Alignment explanation
Indices: 81951269--81951406 Score: 179
Period size: 53 Copynumber: 2.6 Consensus size: 52
81951259 TGCGCCCATT
*** **
81951269 TAAGACCATAGCTGGGATATGGCATCGGTACAATGTGATATATGTTCTCGTA
1 TAAGACCATAGCTGGGATATGGCATCGGTGTGACATGATATATGTTCTCGTA
* *
81951321 TAAGACCATAGCTGGGCTATGGCATCGGTGTGACATGATAATGTGATTC-CGTA
1 TAAGACCATAGCTGGGATATGGCATCGGTGTGACATGAT-ATATG-TTCTCGTA
*
81951374 TAAGACCATATCTGGGATATGGCATCGGTGTGA
1 TAAGACCATAGCTGGGATATGGCATCGGTGTGA
81951407 TGTAATCCGT
Statistics
Matches: 75, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
52 33 0.44
53 39 0.52
54 3 0.04
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (52 bp):
TAAGACCATAGCTGGGATATGGCATCGGTGTGACATGATATATGTTCTCGTA
Found at i:81954207 original size:12 final size:13
Alignment explanation
Indices: 81954192--81954223 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
81954182 ATAACACATT
81954192 TCAAAAC-ATGCA
1 TCAAAACTATGCA
81954204 TCAAAACTATGCA
1 TCAAAACTATGCA
81954217 -CAAAACT
1 TCAAAACT
81954224 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:81954827 original size:86 final size:85
Alignment explanation
Indices: 81954672--81954829 Score: 246
Period size: 86 Copynumber: 1.8 Consensus size: 85
81954662 GACAAGTACA
* * *
81954672 ATGCCGACGTCCCAGACATGGTCTTACATGTAATTCAGTATCGATGCCTCTGTCCCAGACAGGGT
1 ATGCCGACGTCCCAGACATGGTCTTACATGTAATTCAATATCGATGCCACTGTCCCAGACACGGT
81954737 CTTATACAAAAACAGATACG
66 CTTATACAAAAACAGATACG
* *
81954757 ATGCCGATGTCCCAGACATGGTCTTACATGTAAATTCCAAT-TCGATGCCAGTGTCCCAGACACG
1 ATGCCGACGTCCCAGACATGGTCTTACATGT-AATT-CAATATCGATGCCACTGTCCCAGACACG
81954821 GTCTTATAC
64 GTCTTATAC
81954830 GATAATTTAG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
85 30 0.45
86 33 0.50
87 3 0.05
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (85 bp):
ATGCCGACGTCCCAGACATGGTCTTACATGTAATTCAATATCGATGCCACTGTCCCAGACACGGT
CTTATACAAAAACAGATACG
Found at i:81962565 original size:43 final size:43
Alignment explanation
Indices: 81962510--81962596 Score: 115
Period size: 43 Copynumber: 2.0 Consensus size: 43
81962500 ATATCGTACA
**
81962510 ATGCCAATGTCCCAGAC-GTGGTCTTACAT-GTAGCCACATATCG
1 ATGCCAATGTCCCAGACAG-GGTCTTAC-TCGTAAACACATATCG
*
81962553 ATGCCACTGTCCCAGACAGGGTCTTACTCGTAAACACATATCG
1 ATGCCAATGTCCCAGACAGGGTCTTACTCGTAAACACATATCG
81962596 A
1 A
81962597 AATCACAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
42 1 0.03
43 37 0.95
44 1 0.03
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGGGTCTTACTCGTAAACACATATCG
Found at i:81969375 original size:2 final size:2
Alignment explanation
Indices: 81969368--81969400 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
81969358 TGATATTCTC
81969368 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
81969401 ATCCCATACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:81973012 original size:40 final size:41
Alignment explanation
Indices: 81972967--81973133 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 41
81972957 CGGAATATAA
*
81972967 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
81973007 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
81973047 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
81973087 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
81973126 CCGGATAT
1 CCGGATAT
81973134 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 17 0.16
40 87 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:81973982 original size:17 final size:19
Alignment explanation
Indices: 81973959--81974004 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
81973949 AAGAAGCATG
81973959 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
81973977 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
81973995 AATCATGCTC
1 AATCATGCTC
81974005 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:81977295 original size:53 final size:52
Alignment explanation
Indices: 81977152--81977301 Score: 167
Period size: 52 Copynumber: 2.9 Consensus size: 52
81977142 GAAAAAGATG
** * *
81977152 TGATATGTGCGCCCGTTTAAGACCATAATTGGGCTATGGCATCGGTGCAATA
1 TGATATGTGTTCCCGTATAAGACCATAATTGGGCTATGGCATCGGTGCAACA
* ** **
81977204 TGATATGTGTTCCCATATAAGACCATAGCTGGGCTATGGCATCGGTGTGACA
1 TGATATGTGTTCCCGTATAAGACCATAATTGGGCTATGGCATCGGTGCAACA
* * *
81977256 TGATAATGTGATT-CCGTATAAGACTATATTTGGGATATGGCATCGG
1 TGAT-ATGTG-TTCCCGTATAAGACCATAATTGGGCTATGGCATCGG
81977302 GGTGTGGTGT
Statistics
Matches: 82, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
52 47 0.57
53 33 0.40
54 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (52 bp):
TGATATGTGTTCCCGTATAAGACCATAATTGGGCTATGGCATCGGTGCAACA
Found at i:81981851 original size:27 final size:29
Alignment explanation
Indices: 81981799--81981869 Score: 78
Period size: 27 Copynumber: 2.6 Consensus size: 29
81981789 CTTCATGGTG
*
81981799 TACTCTGAATGGA-T-CACCTATGTGGCA
1 TACTCTGAATGGATTGCACCTATATGGCA
*
81981826 TACTCTGAATGGATTGC-CCT-TATGGCT
1 TACTCTGAATGGATTGCACCTATATGGCA
* *
81981853 TACTCTGATTAGATTGC
1 TACTCTGAATGGATTGC
81981870 TTTAGTGCGT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
27 33 0.87
28 4 0.11
29 1 0.03
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (29 bp):
TACTCTGAATGGATTGCACCTATATGGCA
Found at i:81995588 original size:2 final size:2
Alignment explanation
Indices: 81995581--81995611 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
81995571 TTTCATGCAC
81995581 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
81995612 ACTTAATTCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:81996342 original size:39 final size:40
Alignment explanation
Indices: 81996258--81996342 Score: 118
Period size: 39 Copynumber: 2.1 Consensus size: 40
81996248 ACTTAATTCA
* * *
81996258 CCAGCATTAAGCCTGCGGGACTTTAAACCCGGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
*
81996298 CCAGCATGAAGCCAGCGGGTCTCT-AACCCGGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
*
81996337 TCAGCA
1 CCAGCA
81996343 CAATTCATTT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 20 0.50
40 20 0.50
ACGTcount: A:0.29, C:0.32, G:0.21, T:0.18
Consensus pattern (40 bp):
CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
Found at i:81996485 original size:22 final size:22
Alignment explanation
Indices: 81996457--81996580 Score: 74
Period size: 22 Copynumber: 5.4 Consensus size: 22
81996447 CTTACACATA
*
81996457 TATCACATTAACCATTCGGCCT
1 TATCACATTAGCCATTCGGCCT
* * *
81996479 TATCACATGTATGCACTTTC-ACAT
1 TATCACAT-TA-GC-CATTCGGCCT
*
81996503 TCATCACATTGGCCATTCGGCCT
1 T-ATCACATTAGCCATTCGGCCT
* *
81996526 TATCACATATA-CACACTTTC-ACAT
1 TATCACAT-TAGC-CA--TTCGGCCT
*
81996550 TCATCACATTGGCCATTCGGCCT
1 T-ATCACATTAGCCATTCGGCCT
81996573 TATCACAT
1 TATCACAT
81996581 ATACACACTT
Statistics
Matches: 76, Mismatches: 14, Indels: 24
0.67 0.12 0.21
Matches are distributed among these distances:
22 30 0.39
23 13 0.17
24 11 0.14
25 22 0.29
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.33
Consensus pattern (22 bp):
TATCACATTAGCCATTCGGCCT
Found at i:81996512 original size:47 final size:47
Alignment explanation
Indices: 81996413--81996615 Score: 295
Period size: 47 Copynumber: 4.3 Consensus size: 47
81996403 TGCACACTTT
* * *
81996413 TCACAATTGGTCATTCGGCCTTATCACATAT--TCACTTACACATAT-A
1 TCAC-ATTGGCCATTCGGCCTTATCACATATACACACTTTCACAT-TCA
** * **
81996459 TCACATTAACCATTCGGCCTTATCACATGTATGCACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
81996506 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
81996553 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
81996600 TCACATTGGCCATTCG
1 TCACATTGGCCATTCG
81996616 ATCTTAAGCT
Statistics
Matches: 143, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
45 22 0.15
46 5 0.03
47 116 0.81
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
Found at i:82010178 original size:22 final size:22
Alignment explanation
Indices: 82010150--82010224 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
82010140 TTTCACATCC
82010150 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
82010172 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
82010196 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
82010219 ATCACA
1 ATCACA
82010225 CATATATACA
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 17 0.45
23 5 0.13
24 5 0.13
25 11 0.29
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:82010246 original size:49 final size:49
Alignment explanation
Indices: 82010127--82010428 Score: 518
Period size: 49 Copynumber: 6.2 Consensus size: 49
82010117 CGGGACTTAT
* * *
82010127 CACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCTTAT--
1 CACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCCTTATCA
*
82010174 CACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCA
1 CACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCCTTATCA
82010223 CACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCCTTATCA
1 CACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCCTTATCA
*
82010272 CACATATATACACTTTCACATTCATCACGTTGGCCACTCGGCCTTATCA
1 CACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCCTTATCA
*
82010321 CACATATATACACTTTCACATTCATCACGTTAGCCATTCGGCCTTATCA
1 CACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCCTTATCA
*
82010370 CACATATATACACTTTCACATTCATCACGTTGGCCACTCGGCCTTATCA
1 CACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCCTTATCA
*
82010419 CATATATATA
1 CACATATATA
82010429 TCTTGTACAT
Statistics
Matches: 244, Mismatches: 9, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
47 45 0.18
49 199 0.82
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (49 bp):
CACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCCTTATCA
Found at i:82012001 original size:79 final size:80
Alignment explanation
Indices: 82011882--82012065 Score: 201
Period size: 79 Copynumber: 2.3 Consensus size: 80
82011872 GCTACTCGTT
* * * * *
82011882 CAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCACTAAGGCCTACGGGACTTAACCCGG
1 CAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCACGAAGGCCTACGGGACTTAACCCGG
* *
82011947 ATATCACGA-TTGCA
66 ATATCACCACTAGCA
* * * * * *
82011961 CAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCGCACGAATGCCTTCGGGTCTTAGCCCG
1 CAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCGCACGAAGGCCTACGGGACTTAACCCG
82012025 GATATCACCACTAGCA
65 GATATCACCACTAGCA
* * *
82012041 CTATTGCCTTCGGGTCTTAACCCGG
1 CAAATGCCTTCGGGTCTTAGCCCGG
82012066 TTATAATTTC
Statistics
Matches: 87, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
78 1 0.01
79 60 0.69
80 26 0.30
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCACGAAGGCCTACGGGACTTAACCCGG
ATATCACCACTAGCA
Found at i:82012010 original size:40 final size:40
Alignment explanation
Indices: 82011958--82012065 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
82011948 TATCACGATT
** *
82011958 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* **
82011998 GCACGAATGCCTTCGGGTCTTAGCCCGGATATCACCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
82012038 GCACTATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
82012066 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.24, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:82016562 original size:21 final size:21
Alignment explanation
Indices: 82016538--82016577 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
82016528 TTCTGCTCCG
*
82016538 CCTCCCTCGCTGCTGCCTCAC
1 CCTCCCGCGCTGCTGCCTCAC
82016559 CCTCCCGCGCTGCTGCCTC
1 CCTCCCGCGCTGCTGCCTC
82016578 CGCTCTAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.03, C:0.57, G:0.17, T:0.23
Consensus pattern (21 bp):
CCTCCCGCGCTGCTGCCTCAC
Found at i:82021099 original size:9 final size:9
Alignment explanation
Indices: 82021085--82021173 Score: 79
Period size: 9 Copynumber: 9.6 Consensus size: 9
82021075 ATGTATTAGT
82021085 TAAGTTATG
1 TAAGTTATG
82021094 TAAGTTGTTATG
1 TAA---GTTATG
*
82021106 TACGTTATG
1 TAAGTTATG
*
82021115 TGAGTTATG
1 TAAGTTATG
*
82021124 TAAATTATG
1 TAAGTTATG
* *
82021133 TATGTTATA
1 TAAGTTATG
*
82021142 TGAGTTATG
1 TAAGTTATG
82021151 TAAGTTATG
1 TAAGTTATG
* *
82021160 TAATTTATT
1 TAAGTTATG
82021169 TAAGT
1 TAAGT
82021174 AATGATCAAT
Statistics
Matches: 62, Mismatches: 15, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
9 54 0.87
12 8 0.13
ACGTcount: A:0.30, C:0.01, G:0.20, T:0.48
Consensus pattern (9 bp):
TAAGTTATG
Found at i:82021139 original size:27 final size:27
Alignment explanation
Indices: 82021101--82021161 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
82021091 ATGTAAGTTG
*
82021101 TTATGTACGTTATGTGAGTTATGTAAA
1 TTATGTACGTTATATGAGTTATGTAAA
* *
82021128 TTATGTATGTTATATGAGTTATGTAAG
1 TTATGTACGTTATATGAGTTATGTAAA
82021155 TTATGTA
1 TTATGTA
82021162 ATTTATTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.30, C:0.02, G:0.21, T:0.48
Consensus pattern (27 bp):
TTATGTACGTTATATGAGTTATGTAAA
Found at i:82021776 original size:241 final size:241
Alignment explanation
Indices: 82021353--82021839 Score: 913
Period size: 241 Copynumber: 2.0 Consensus size: 241
82021343 TTAAGGTTAT
*
82021353 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTTCAACTCTTTTTGAATTTTTTAAGAT
*
82021418 TTATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCAATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCAATATAAGGCA
82021483 ACCCGTCAGCTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGCTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
82021548 GGTCAGCTATTGTTGTAATTTTAATGGACAAGCAA-GCTACATGGTA
196 GGTCAGCTATTGTTGTAATTTTAATGGACAAGCAATG-TACATGGTA
*
82021594 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAACTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTTCAACTCTTTTTGAATTTTTTAAGAT
*
82021659 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCAATATAAGGCA
*
82021724 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGCTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
82021789 GGTCAGCTATTGTTGTAATTTTAATGGACAAGCAATGTACATGGTA
196 GGTCAGCTATTGTTGTAATTTTAATGGACAAGCAATGTACATGGTA
82021835 ATAAA
1 ATAAA
82021840 ATTAATTCAT
Statistics
Matches: 240, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
241 239 1.00
242 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (241 bp):
ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTTCAACTCTTTTTGAATTTTTTAAGAT
TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCAATATAAGGCA
ACCCGTCAGCTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
GGTCAGCTATTGTTGTAATTTTAATGGACAAGCAATGTACATGGTA
Found at i:82021887 original size:18 final size:17
Alignment explanation
Indices: 82021864--82021900 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
82021854 ATTCATACTT
*
82021864 AAGTTGAATCAAATAATA
1 AAGTTGAACCAAAT-ATA
82021882 AAGTTGAACCAAATATA
1 AAGTTGAACCAAATATA
82021899 AA
1 AA
82021901 AACTTATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.57, C:0.08, G:0.11, T:0.24
Consensus pattern (17 bp):
AAGTTGAACCAAATATA
Found at i:82026032 original size:136 final size:137
Alignment explanation
Indices: 82025788--82026073 Score: 520
Period size: 136 Copynumber: 2.1 Consensus size: 137
82025778 TATTGGGCCT
** *
82025788 AAGCCCATTCAGGTAACAGTGGTACTGGGCTAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
82025853 AGCCCCTTCTTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
82025917 CATATGC
131 CATATGC
82025924 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
82025989 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
82026054 CATATGC
131 CATATGC
82026061 AAGCCCATTTGGG
1 AAGCCCATTTGGG
82026074 GAGACTACTC
Statistics
Matches: 144, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
136 122 0.85
137 22 0.15
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:82027891 original size:26 final size:26
Alignment explanation
Indices: 82027855--82027964 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
82027845 CATGAATTTC
*
82027855 TTATCATGAAACATTTACCTAAACCA
1 TTATCATGAAACATTTACCTAACCCA
82027881 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
82027907 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
*
82027933 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
82027959 TTATCA
1 TTATCA
82027965 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:82041191 original size:23 final size:23
Alignment explanation
Indices: 82041165--82041218 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
82041155 AATGCACAAA
82041165 GGCGTGTGCATTGTCTCCACACG
1 GGCGTGTGCATTGTCTCCACACG
* *
82041188 GGCGTTTGCATTGTCTCCACATG
1 GGCGTGTGCATTGTCTCCACACG
*
82041211 GGCATGTG
1 GGCGTGTG
82041219 AGGCATTAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.13, C:0.26, G:0.31, T:0.30
Consensus pattern (23 bp):
GGCGTGTGCATTGTCTCCACACG
Found at i:82059352 original size:46 final size:48
Alignment explanation
Indices: 82059252--82059472 Score: 183
Period size: 46 Copynumber: 4.7 Consensus size: 48
82059242 ATTGTGGACT
* * * *
82059252 AGTGTAAGATCATGTCTGGGACATGGCATCGGCATTGAGATG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA-AGCC
*
82059300 AATGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAAGCC
* * *
82059346 AGTGTAAGA-CATGTCTGGGACAT-GCATCAG-CTACTAGATGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGTAAGCC
* ** * **
82059390 AGTGTAAGACCATGTCTAGGACATGGCATC-AACACG-GATCTGTGAAAGGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGA--TGT--AAGCC
*
82059440 AGTGTAAAACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
82059473 ATTATACCCT
Statistics
Matches: 143, Mismatches: 18, Indels: 21
0.79 0.10 0.12
Matches are distributed among these distances:
44 13 0.09
45 16 0.11
46 62 0.43
47 15 0.10
48 8 0.06
50 29 0.20
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAAGCC
Found at i:82060876 original size:49 final size:49
Alignment explanation
Indices: 82060823--82060994 Score: 233
Period size: 49 Copynumber: 3.5 Consensus size: 49
82060813 CTGGTACGCA
82060823 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* ** * * *
82060872 TAGTAGCCTGCACTTAGTAC-ACACGTGATCGA--TGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATG--CGACCAATTATCCGGTACACG
* *
82060920 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
82060969 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
82060995 CATGACCTCA
Statistics
Matches: 103, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
47 3 0.03
48 36 0.35
49 61 0.59
50 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
Found at i:82060981 original size:97 final size:98
Alignment explanation
Indices: 82060810--82060993 Score: 334
Period size: 97 Copynumber: 1.9 Consensus size: 98
82060800 TGGCCAAAGC
* * *
82060810 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TATCGGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCAGTACACGTAG
82060875 TAGCCTGCACTTAGTAC-ACACGTGATCGATGT
66 TAGCCTGCACTTAGTACTACACGTGATCGATGT
82060907 TATCGGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCAGTACACGTAG
1 TATCGGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCAGTACACGTAG
82060972 TAGCCTGCACTTAGTACTACAC
66 TAGCCTGCACTTAGTACTACAC
82060994 ACATGACCTC
Statistics
Matches: 83, Mismatches: 3, Indels: 1
0.95 0.03 0.01
Matches are distributed among these distances:
97 79 0.95
98 4 0.05
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (98 bp):
TATCGGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCAGTACACGTAG
TAGCCTGCACTTAGTACTACACGTGATCGATGT
Found at i:82065858 original size:36 final size:36
Alignment explanation
Indices: 82065806--82065878 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
82065796 AAAGCTAACG
*
82065806 AAAATAGCCGGCGTGTATAACGTTGATTCGGTCACC
1 AAAACAGCCGGCGTGTATAACGTTGATTCGGTCACC
82065842 AAAACAGCCGGCGTGTATAACGTTGATTCGGTCACC
1 AAAACAGCCGGCGTGTATAACGTTGATTCGGTCACC
82065878 A
1 A
82065879 TTCTCTCTAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (36 bp):
AAAACAGCCGGCGTGTATAACGTTGATTCGGTCACC
Found at i:82074241 original size:53 final size:53
Alignment explanation
Indices: 82074172--82074277 Score: 142
Period size: 53 Copynumber: 2.0 Consensus size: 53
82074162 TTTTCCTTTT
* * * * *
82074172 TGAACTTACCATTGCCATGTCTT-GACATGGTCTTACGTGGTATCCTTACCTTA
1 TGAACTCACCAATGCCATGCCTTAG-CATGGTCTTACATGATATCCTTACCTTA
*
82074225 TGAACTCACCAATGCCATGCCTTAGCATGGTCTTACATGATATCCTTATCTTA
1 TGAACTCACCAATGCCATGCCTTAGCATGGTCTTACATGATATCCTTACCTTA
82074278 CCAAATGCCA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
53 45 0.98
54 1 0.02
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (53 bp):
TGAACTCACCAATGCCATGCCTTAGCATGGTCTTACATGATATCCTTACCTTA
Found at i:82074307 original size:47 final size:47
Alignment explanation
Indices: 82074250--82074371 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
82074240 CATGCCTTAG
*
82074250 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
* *
82074297 CTTGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
82074344 CATGGTCTTACATGGTATCCTTATCTTA
1 CATGGTCTTACATGGTATCCTTATCTTA
82074372 GTGCCAATGC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:82074560 original size:44 final size:44
Alignment explanation
Indices: 82074511--82074595 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
82074501 ATCCTTAACC
* *
82074511 GTCAATTCCTCCTTAAATGCCATGTTATAAACATGGACTTTTCT
1 GTCAATTCCTCCTTAAATGCCATGGTACAAACATGGACTTTTCT
* * *
82074555 GTCAATTCTTCCTTAATTGCCATGGTACAACCATGGACTTT
1 GTCAATTCCTCCTTAAATGCCATGGTACAAACATGGACTTT
82074596 GAGATATCAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.38
Consensus pattern (44 bp):
GTCAATTCCTCCTTAAATGCCATGGTACAAACATGGACTTTTCT
Found at i:82075168 original size:31 final size:30
Alignment explanation
Indices: 82075133--82075190 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
82075123 CTAACTCAAA
82075133 CTTTGGAAAAATTACAATTTTGCCCCTACAC
1 CTTT-GAAAAATTACAATTTTGCCCCTACAC
* * *
82075164 CTTTGCAAAATTACGATTTTTCCCCTA
1 CTTTGAAAAATTACAATTTTGCCCCTA
82075191 GAATCCATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.29, C:0.26, G:0.09, T:0.36
Consensus pattern (30 bp):
CTTTGAAAAATTACAATTTTGCCCCTACAC
Found at i:82080852 original size:55 final size:53
Alignment explanation
Indices: 82080725--82080925 Score: 208
Period size: 55 Copynumber: 3.7 Consensus size: 53
82080715 TTTCCTTTTT
* * * * * * * *
82080725 GAACTTACCATTGCCATGTCTTGACATGGTCATACGTGGTATCCTTGCCATAT-
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTGCCTTATA
* *
82080778 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGGGACC-TTGCCTTATA
* ***
82080832 GTAA-TTCATCAATGCCATGCCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTT-ATCAATGCCATGCCTTGGCATGGTCTTACATG-GGACCTTGCCTTATA
*
82080887 GAACTTATCAATGTCATGCCTTGGCATGGTCTTACATGG
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGG
82080926 TATCCTTGTC
Statistics
Matches: 125, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
52 2 0.02
53 42 0.34
54 34 0.27
55 45 0.36
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (53 bp):
GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTGCCTTATA
Found at i:82081008 original size:47 final size:47
Alignment explanation
Indices: 82080957--82081072 Score: 125
Period size: 45 Copynumber: 2.5 Consensus size: 47
82080947 CATGTTCCAA
* * *
82080957 ACATGGTCTTACATGGAGTCCTTAATCAATGCCGATGCCATGTCTTG
1 ACATGGTCTTACATGGAGTCCTTAAGCAATACCAATGCCATGTCTTG
* **
82081004 ACATGGTCTTACACGG-GATCCTT--GCCTTACCAATGCCATGTCTTG
1 ACATGGTCTTACATGGAG-TCCTTAAGCAATACCAATGCCATGTCTTG
82081049 ACATGGT-TTACATGGTA-TCCTTAA
1 ACATGGTCTTACATGG-AGTCCTTAA
82081073 CCTTCAATTC
Statistics
Matches: 57, Mismatches: 7, Indels: 11
0.76 0.09 0.15
Matches are distributed among these distances:
44 12 0.21
45 24 0.42
46 1 0.02
47 20 0.35
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (47 bp):
ACATGGTCTTACATGGAGTCCTTAAGCAATACCAATGCCATGTCTTG
Found at i:82081708 original size:30 final size:30
Alignment explanation
Indices: 82081674--82081732 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
82081664 CCTAACTCAA
82081674 ACTTTGGAAAAATTACAATTTTGCCCCTAC
1 ACTTTGGAAAAATTACAATTTTGCCCCTAC
* * * **
82081704 ACTTTTGCAGAATTATGATTTTGCCCCTA
1 ACTTTGGAAAAATTACAATTTTGCCCCTA
82081733 GGCTCGAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (30 bp):
ACTTTGGAAAAATTACAATTTTGCCCCTAC
Found at i:82087973 original size:46 final size:45
Alignment explanation
Indices: 82087888--82088047 Score: 164
Period size: 46 Copynumber: 3.5 Consensus size: 45
82087878 ATTGTGGACT
* * *
82087888 AGTGTAAGACCATGTCT-GAGACATGGCATCGGCATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTAG-GACA-AGCATCGGCCTTGAGATGA-AGCC
*
82087936 AGTGTAAGACATGTCTAGGACAAGTATCGGCCTTGAGATGTAAGCC
1 AGTGTAAGACATGTCTAGGACAAGCATCGGCCTTGAGATG-AAGCC
* * * *
82087982 AGTGTAAAACATGTCTAGGACATGCATCGG-CTACGAGAT-ATGCC
1 AGTGTAAGACATGTCTAGGACAAGCATCGGCCT-TGAGATGAAGCC
*
82088026 AGTTTAAGACATGTCTAGGACA
1 AGTGTAAGACATGTCTAGGACA
82088048 TGGCGTCGAC
Statistics
Matches: 98, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
44 24 0.24
45 2 0.02
46 50 0.51
47 12 0.12
48 10 0.10
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTAGGACAAGCATCGGCCTTGAGATGAAGCC
Found at i:82088073 original size:31 final size:31
Alignment explanation
Indices: 82088035--82088096 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
82088025 CAGTTTAAGA
** * *
82088035 CATGTCTAGGACATGGCGTCGACATGGATAT
1 CATGTCTAAAACATGGCATCGACACGGATAT
82088066 CATGTCTAAAACATGGCATCGACACGGATAT
1 CATGTCTAAAACATGGCATCGACACGGATAT
82088097 GTGAGAGCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (31 bp):
CATGTCTAAAACATGGCATCGACACGGATAT
Found at i:82088171 original size:47 final size:47
Alignment explanation
Indices: 82088108--82088230 Score: 219
Period size: 47 Copynumber: 2.6 Consensus size: 47
82088098 TGAGAGCTAA
*
82088108 TGTAAGACCATGTCTGGGACATGGCATTGACTTGATGGATGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCCAG
*
82088155 TGTAAAACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCCAG
*
82088202 TGTAAGACCATGTCTGGAACATGGCATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
82088231 GCTTTATACC
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCCAG
Found at i:82091106 original size:42 final size:41
Alignment explanation
Indices: 82090993--82091112 Score: 125
Period size: 41 Copynumber: 2.9 Consensus size: 41
82090983 TACTATACCA
*
82090993 ATGCCATATCCCAGATATGGTATTACATGTAATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATG-AATCTCATATCG
**** * *
82091035 ATGCCA-AGAGAAGCTATGGTCCTACATGAAGTCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATGAA-TCTCATATCG
* *
82091076 GTGCCATATCCCATATATGGTCTTACATGAAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACATG-AATCTCA
82091113 GTAACCCTAA
Statistics
Matches: 60, Mismatches: 15, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
40 2 0.03
41 30 0.50
42 26 0.43
43 2 0.03
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.30
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACATGAATCTCATATCG
Found at i:82091859 original size:39 final size:39
Alignment explanation
Indices: 82091805--82091883 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
82091795 CTTAAAAATC
82091805 ATTAAAAACGGTGCTACAACAGACTTACAATCGAGCTTG
1 ATTAAAAACGGTGCTACAACAGACTTACAATCGAGCTTG
82091844 ATTAAAAACGGTGCTACAACAGACTTACAATCGAGCTTG
1 ATTAAAAACGGTGCTACAACAGACTTACAATCGAGCTTG
82091883 A
1 A
82091884 AAGTTTCCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (39 bp):
ATTAAAAACGGTGCTACAACAGACTTACAATCGAGCTTG
Found at i:82103115 original size:30 final size:30
Alignment explanation
Indices: 82103041--82103115 Score: 107
Period size: 30 Copynumber: 2.5 Consensus size: 30
82103031 ACACGAGTGG
* *
82103041 CCACACAGATGTGTGCCGCACACAGGCGGT
1 CCACACAGGTGTGTGCCACACACAGGCGGT
*
82103071 CCACACAGGTGTGTGCCACACACGGGCGGT
1 CCACACAGGTGTGTGCCACACACAGGCGGT
82103101 CCACAC-GGTCGTGTG
1 CCACACAGGT-GTGTG
82103116 ATTTTGGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
29 3 0.07
30 38 0.93
ACGTcount: A:0.20, C:0.33, G:0.32, T:0.15
Consensus pattern (30 bp):
CCACACAGGTGTGTGCCACACACAGGCGGT
Found at i:82103250 original size:21 final size:20
Alignment explanation
Indices: 82103210--82103260 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
82103200 CGAGCGTGTG
* **
82103210 CCTTAGACACAAGGCCGTAT
1 CCTTGGACACAAGGTTGTAT
82103230 ACCTTGGACACAAGGTTGTAT
1 -CCTTGGACACAAGGTTGTAT
82103251 CCTTTGGACA
1 CC-TTGGACA
82103261 TAAAGTTGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 2 0.08
21 24 0.92
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (20 bp):
CCTTGGACACAAGGTTGTAT
Done.