Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Chr10 129486693 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 129486693 ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32 Warning! 305 characters in sequence are not A, C, G, or T File 284 of 444 Found at i:82108019 original size:26 final size:26 Alignment explanation
Indices: 82107982--82108037 Score: 78 Period size: 26 Copynumber: 2.2 Consensus size: 26 82107972 TTTCACCCCT 82107982 AAAATCCTAACCTTAAAAAAATTAAA 1 AAAATCCTAACCTTAAAAAAATTAAA ** 82108008 AAAACTCC-AACCTTATCAAAATTAAA 1 AAAA-TCCTAACCTTAAAAAAATTAAA 82108034 AAAA 1 AAAA 82108038 AAAAATCGAG Statistics Matches: 27, Mismatches: 2, Indels: 2 0.87 0.06 0.06 Matches are distributed among these distances: 26 24 0.89 27 3 0.11 ACGTcount: A:0.61, C:0.18, G:0.00, T:0.21 Consensus pattern (26 bp): AAAATCCTAACCTTAAAAAAATTAAA Found at i:82108238 original size:18 final size:18 Alignment explanation
Indices: 82108215--82108249 Score: 61 Period size: 18 Copynumber: 1.9 Consensus size: 18 82108205 AATTTAATTT * 82108215 TTTTTATAATTTAAAAAC 1 TTTTTATAATCTAAAAAC 82108233 TTTTTATAATCTAAAAA 1 TTTTTATAATCTAAAAA 82108250 TATTGACGGG Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 18 16 1.00 ACGTcount: A:0.46, C:0.06, G:0.00, T:0.49 Consensus pattern (18 bp): TTTTTATAATCTAAAAAC Found at i:82109061 original size:17 final size:17 Alignment explanation
Indices: 82109039--82109072 Score: 50 Period size: 17 Copynumber: 2.0 Consensus size: 17 82109029 TCGTTGAAAA * * 82109039 GAATTTTTAATTTTTAT 1 GAATTTATAATATTTAT 82109056 GAATTTATAATATTTAT 1 GAATTTATAATATTTAT 82109073 TTAATCGAAT Statistics Matches: 15, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 17 15 1.00 ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59 Consensus pattern (17 bp): GAATTTATAATATTTAT Found at i:82110186 original size:7 final size:7 Alignment explanation
Indices: 82110174--82110199 Score: 52 Period size: 7 Copynumber: 3.7 Consensus size: 7 82110164 GGGATATTGA 82110174 TTTATGT 1 TTTATGT 82110181 TTTATGT 1 TTTATGT 82110188 TTTATGT 1 TTTATGT 82110195 TTTAT 1 TTTAT 82110200 TATTTGTTAC Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 19 1.00 ACGTcount: A:0.15, C:0.00, G:0.12, T:0.73 Consensus pattern (7 bp): TTTATGT Found at i:82116078 original size:21 final size:21 Alignment explanation
Indices: 82116054--82116094 Score: 55 Period size: 21 Copynumber: 2.0 Consensus size: 21 82116044 CCACCTTTTC * 82116054 CATCCCCACCTCCACCTCCAA 1 CATCCCCACCGCCACCTCCAA * * 82116075 CATCTCCATCGCCACCTCCA 1 CATCCCCACCGCCACCTCCA 82116095 CCTCCTCCGC Statistics Matches: 17, Mismatches: 3, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 21 17 1.00 ACGTcount: A:0.22, C:0.59, G:0.02, T:0.17 Consensus pattern (21 bp): CATCCCCACCGCCACCTCCAA Found at i:82117369 original size:79 final size:79 Alignment explanation
Indices: 82117238--82117389 Score: 184 Period size: 79 Copynumber: 1.9 Consensus size: 79 82117228 AGTATGTATC * * * * 82117238 TGTTTTAAAAGTTAAAGAGTCTGGATGATAACCCTTCTAATTGTTCTTTTGTTGAACGAT-TGAG 1 TGTTTTAAAAGTCAAAGAGTCTGGATGATAACCCCTCTAATTGTTCCTTTGTTGAA-AATCTGAG * 82117302 CTATGTTATGCTCTT 65 CTATATTATGCTCTT * * * 82117317 TGTTTTAAAAGTCAAAGAGTGTGGATGGA-AACCCCTGTCATCT-TTCCTTTGTTGAAAATCTGA 1 TGTTTTAAAAGTCAAAGAGTCTGGAT-GATAACCCCTCTAAT-TGTTCCTTTGTTGAAAATCTGA 82117380 GCTATATTAT 64 GCTATATTAT 82117390 CCTTCTTTCG Statistics Matches: 62, Mismatches: 8, Indels: 6 0.82 0.11 0.08 Matches are distributed among these distances: 78 2 0.03 79 57 0.92 80 3 0.05 ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40 Consensus pattern (79 bp): TGTTTTAAAAGTCAAAGAGTCTGGATGATAACCCCTCTAATTGTTCCTTTGTTGAAAATCTGAGC TATATTATGCTCTT Found at i:82125971 original size:12 final size:12 Alignment explanation
Indices: 82125925--82125976 Score: 50 Period size: 14 Copynumber: 4.0 Consensus size: 12 82125915 ATTGCAAAAT * 82125925 AAATAGTATATA 1 AAATAATATATA * 82125937 TATATATATATATA 1 -AAATA-ATATATA 82125951 AAAGGTAATATATA 1 AAA--TAATATATA 82125965 AAATAATATATA 1 AAATAATATATA 82125977 CTTCAATCAA Statistics Matches: 33, Mismatches: 3, Indels: 7 0.77 0.07 0.16 Matches are distributed among these distances: 12 9 0.27 13 6 0.18 14 16 0.48 15 2 0.06 ACGTcount: A:0.58, C:0.00, G:0.06, T:0.37 Consensus pattern (12 bp): AAATAATATATA Found at i:82127520 original size:44 final size:43 Alignment explanation
Indices: 82127472--82127610 Score: 147 Period size: 44 Copynumber: 3.2 Consensus size: 43 82127462 CGATACATGG ** * 82127472 AGATAAGATCTGTAATCTTCAGTCTGCT-TCCTGCAACTTCAGGA 1 AGATAAGA-CTGT-ATCTTCAACCTGCTCTCCTGCAACCTCAGGA ** * 82127516 AGATAAGACTTGTATCTTCAACCTGCTCTTTTGCTACCTCAGGA 1 AGATAAGAC-TGTATCTTCAACCTGCTCTCCTGCAACCTCAGGA * * 82127560 AGATAAGACCTGTATCTTCAACCTGCTCTCTTGCTACCTCA-GA 1 AGATAAGA-CTGTATCTTCAACCTGCTCTCCTGCAACCTCAGGA 82127603 GAGATAAG 1 -AGATAAG 82127611 GCTGGTGGCT Statistics Matches: 84, Mismatches: 7, Indels: 8 0.85 0.07 0.08 Matches are distributed among these distances: 43 15 0.18 44 68 0.81 45 1 0.01 ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31 Consensus pattern (43 bp): AGATAAGACTGTATCTTCAACCTGCTCTCCTGCAACCTCAGGA Found at i:82127652 original size:88 final size:87 Alignment explanation
Indices: 82127405--82127655 Score: 220 Period size: 88 Copynumber: 2.8 Consensus size: 87 82127395 GCATATTGAG * * * 82127405 CCTGCTCCACTGCAACTTCAGAGAGATAAGACTGGTGGCTAAAATCTGCTCCATAGCCGATACAT 1 CCTGCTTC-CTGCAACCTCAGAGAGATAAGACTGGTGGCTAAAATCTGCTCCATAG-CGATATAT * * 82127470 GGAGATAAGATCTGTAATCTTCAG 64 GGAGATAAGACCTGTAATCTTCAA * * * ** ** * ** * * ** 82127494 TCTGCTTCCTGCAACTTCAG-GAAGATAAGACTTGTATCTTCAACCTGCTCTTTTGCTACCTCA- 1 CCTGCTTCCTGCAACCTCAGAG-AGATAAGACTGGTGGCTAAAATCTGCTCCATAGCGATAT-AT 82127557 GGAAGATAAGACCTGT-ATCTTCAA 64 GG-AGATAAGACCTGTAATCTTCAA * * * 82127581 CCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGTCGATATAT 1 CCTGCT-TCCTGCAACCTCAGAGAGATAAGACTGGTGGCTAAAATCTGCTCCATAG-CGATATAT 82127646 GGAGATAAGA 64 GGAGATAAGA 82127656 TTCGCCATCT Statistics Matches: 121, Mismatches: 34, Indels: 15 0.71 0.20 0.09 Matches are distributed among these distances: 87 17 0.14 88 92 0.76 89 12 0.10 ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28 Consensus pattern (87 bp): CCTGCTTCCTGCAACCTCAGAGAGATAAGACTGGTGGCTAAAATCTGCTCCATAGCGATATATGG AGATAAGACCTGTAATCTTCAA Found at i:82127782 original size:176 final size:177 Alignment explanation
Indices: 82127415--82128065 Score: 748 Period size: 176 Copynumber: 3.7 Consensus size: 177 82127405 CCTGCTCCAC * * 82127415 TGCAACTTCAGAGAGATAAGACTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA 1 TGCAACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA ** * * 82127480 -TCTGTAATCTTC-AGTCTGCTTCC-T-G-C-A-ACTTCAGGAAGATAAGA-CTTGT-ATCTTCA 66 CTC-GCCATCTTCGA-TCTGC-TCCATAGCCGATACAT-A-G-AGATAAGATC-TGTAATTTTCA ** * ** * * * 82127536 ACCTGCTCTTTTGCTACCTCAGGAAGATAAGACCTGTATCTTCAACCTGCTCTCT 124 GTCTGAT-TCCTGCAACTTCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCT * * * 82127591 TGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGTCGATATATGGAGATAAGA 1 TGCAACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA * * 82127656 TTCGCCATCTTCGATCTGTTCCATAGCCGATACATAGAGATAAGATCTGTAATTTTCAGTCTGAT 66 CTCGCCATCTTCGATCTGCTCCATAGCCGATACATAGAGATAAGATCTGTAATTTTCAGTCTGAT * * 82127721 TCCTGCAACTTCAGGAAGATAAGACTTGTATCTTTAACTTGCTCTC- 131 TCCTGCAACTTCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCT * * * ** * 82127767 TGCAACTTTAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCGTAATCAATACATGGAGATAAGA 1 TGCAACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA * * * * * * 82127832 CTCGCCATTTTCGATCTGCTCCATAGCCGATAAATGGAGATAATATCTATATTTTTCAGTCT-AC 66 CTCGCCATCTTCGATCTGCTCCATAGCCGATACATAGAGATAAGATCTGTAATTTTCAGTCTGA- * * * 82127896 TTCCTGCAACTTCAAGAATATAAGACTTGTACCTTCAACCTGCTCTCT 130 TTCCTGCAACTTCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCT * * * * 82127944 TGCTACCTTAGAGAGATAAGGTTGGTGTCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA 1 TGCAACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA * * * * 82128009 CTCGTCATTTTCGATCTACTCCATAGTCGATACATAGAGATAAGATCTGTAATTTTC 66 CTCGCCATCTTCGATCTGCTCCATAGCCGATACATAGAGATAAGATCTGTAATTTTC 82128066 GCCGATGTCA Statistics Matches: 408, Mismatches: 56, Indels: 21 0.84 0.12 0.04 Matches are distributed among these distances: 175 4 0.01 176 226 0.55 177 160 0.39 178 13 0.03 179 2 0.00 180 3 0.01 ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31 Consensus pattern (177 bp): TGCAACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA CTCGCCATCTTCGATCTGCTCCATAGCCGATACATAGAGATAAGATCTGTAATTTTCAGTCTGAT TCCTGCAACTTCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCT Found at i:82128033 original size:177 final size:177 Alignment explanation
Indices: 82127558--82128065 Score: 750 Period size: 176 Copynumber: 2.9 Consensus size: 177 82127548 GCTACCTCAG * * 82127558 GAAGATAAGACCTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAA 1 GAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAA * * * * 82127623 AATCTGCTCCATAGTCGATATATGGAGATAAGATTCGCCATCTTCGATCTGTTCCATAGCCGATA 66 AATCTGCTCCATAGTCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATA * 82127688 CATAGAGATAAGATCTGTAATTTTCAGTCTGATTCCTGCAACTTCAG 131 CATAGAGATAAGATCTGTAATTTTCAGTCTGATTCCTGCAACTTCAA * * * * 82127735 GAAGATAAGACTTGTATCTTTAACTTGCTCTC-TGCAACTTTAGAGAGATAAGGCTGGTGGCTAA 1 GAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAA * * * 82127799 AATCTGCTCCGTAATCAATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATA 66 AATCTGCTCCATAGTCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATA * * * * * 82127864 AATGGAGATAATATCTATATTTTTCAGTCT-ACTTCCTGCAACTTCAA 131 CATAGAGATAAGATCTGTAATTTTCAGTCTGA-TTCCTGCAACTTCAA * * * * 82127911 GAATATAAGACTTGTACCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGTTGGTGTCTAA 1 GAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAA * * * * 82127976 AATCTGCTCCATAGCCGATACATGGAGATAAGACTCGTCATTTTCGATCTACTCCATAGTCGATA 66 AATCTGCTCCATAGTCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATA 82128041 CATAGAGATAAGATCTGTAATTTTC 131 CATAGAGATAAGATCTGTAATTTTC 82128066 GCCGATGTCA Statistics Matches: 290, Mismatches: 39, Indels: 4 0.87 0.12 0.01 Matches are distributed among these distances: 175 1 0.00 176 154 0.53 177 135 0.47 ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31 Consensus pattern (177 bp): GAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAA AATCTGCTCCATAGTCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATA CATAGAGATAAGATCTGTAATTTTCAGTCTGATTCCTGCAACTTCAA Found at i:82128034 original size:45 final size:45 Alignment explanation
Indices: 82127977--82128066 Score: 128 Period size: 45 Copynumber: 2.0 Consensus size: 45 82127967 GGTGTCTAAA * * * 82127977 ATCTGCTCCATAGCCGATACATGGAGATAAGA-CTCGTCATTTTCG 1 ATCTACTCCATAGCCGATACATAGAGATAAGATCT-GTAATTTTCG * 82128022 ATCTACTCCATAGTCGATACATAGAGATAAGATCTGTAATTTTCG 1 ATCTACTCCATAGCCGATACATAGAGATAAGATCTGTAATTTTCG 82128067 CCGATGTCAC Statistics Matches: 40, Mismatches: 4, Indels: 2 0.87 0.09 0.04 Matches are distributed among these distances: 45 38 0.95 46 2 0.05 ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31 Consensus pattern (45 bp): ATCTACTCCATAGCCGATACATAGAGATAAGATCTGTAATTTTCG Found at i:82128187 original size:23 final size:22 Alignment explanation
Indices: 82128136--82128188 Score: 54 Period size: 23 Copynumber: 2.3 Consensus size: 22 82128126 TATGTTTATG * 82128136 CCAAATGATTAGAATGCTATGA 1 CCAAATGATTAGAATGCTATAA * 82128158 CCGAAATGAATTAG-ATGCTCCTAA 1 CC-AAATG-ATTAGAATGCT-ATAA 82128182 CCAAATG 1 CCAAATG 82128189 TGTTATGAAT Statistics Matches: 26, Mismatches: 2, Indels: 5 0.79 0.06 0.15 Matches are distributed among these distances: 22 2 0.08 23 15 0.58 24 9 0.35 ACGTcount: A:0.40, C:0.19, G:0.17, T:0.25 Consensus pattern (22 bp): CCAAATGATTAGAATGCTATAA Found at i:82143248 original size:12 final size:12 Alignment explanation
Indices: 82143200--82143263 Score: 56 Period size: 14 Copynumber: 4.9 Consensus size: 12 82143190 ATGAAATTGC 82143200 AATATATATATATA 1 AATA-ATATATA-A * 82143214 TATATATATATATA 1 AATA-ATATATA-A * 82143228 TATATATATATAA 1 AATA-ATATATAA * 82143241 AGTAATATATAA 1 AATAATATATAA 82143253 AATAATATATA 1 AATAATATATA 82143264 CGTCAATCAA Statistics Matches: 46, Mismatches: 4, Indels: 2 0.88 0.08 0.04 Matches are distributed among these distances: 12 18 0.39 13 3 0.07 14 25 0.54 ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42 Consensus pattern (12 bp): AATAATATATAA Found at i:82143251 original size:2 final size:2 Alignment explanation
Indices: 82143201--82143239 Score: 78 Period size: 2 Copynumber: 19.5 Consensus size: 2 82143191 TGAAATTGCA 82143201 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A 82143240 AAGTAATATA Statistics Matches: 37, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 37 1.00 ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49 Consensus pattern (2 bp): AT Found at i:82146384 original size:19 final size:19 Alignment explanation
Indices: 82146360--82146400 Score: 73 Period size: 19 Copynumber: 2.2 Consensus size: 19 82146350 TATTTTAAAG 82146360 TTATTTAGGTAAATAAATC 1 TTATTTAGGTAAATAAATC * 82146379 TTATTTAGGTAGATAAATC 1 TTATTTAGGTAAATAAATC 82146398 TTA 1 TTA 82146401 GAATAAATCA Statistics Matches: 21, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 19 21 1.00 ACGTcount: A:0.39, C:0.05, G:0.12, T:0.44 Consensus pattern (19 bp): TTATTTAGGTAAATAAATC Found at i:82155874 original size:242 final size:242 Alignment explanation
Indices: 82155449--82155933 Score: 961 Period size: 242 Copynumber: 2.0 Consensus size: 242 82155439 GATCTCAAGC 82155449 AGCTGGATTTTTTTTAATCTTATTGATTTTGTATCAAGCTCAAGTTTCTTTCAGGCTTGAGCTCA 1 AGCTGGATTTTTTTTAATCTTATTGATTTTGTATCAAGCTCAAGTTTCTTTCAGGCTTGAGCTCA 82155514 ACTCGGCCTGGTTAAGCCCCTAGCCTTACCTTATATCTACGGCCCTATTTCTACTTCTCAATTTG 66 ACTCGGCCTGGTTAAGCCCCTAGCCTTACCTTATATCTACGGCCCTATTTCTACTTCTCAATTTG 82155579 AATATGAAGTTACTTGATCCTTCAAATCTTGGTCTTTATCAAATGGTCAAGGTTCTATTTCCATG 131 AATATGAAGTTACTTGATCCTTCAAATCTTGGTCTTTATCAAATGGTCAAGGTTCTATTTCCATG 82155644 AATGCAGTTGAAAGAAAGAGCAGAAAAGCTTGAAAATTGGAGAATGA 196 AATGCAGTTGAAAGAAAGAGCAGAAAAGCTTGAAAATTGGAGAATGA 82155691 AGCTGGATTTTTTTTAATCTTATTGATTTTGTATCAAGCTCAAGTTTCTTTCAGGCTTGAGCTCA 1 AGCTGGATTTTTTTTAATCTTATTGATTTTGTATCAAGCTCAAGTTTCTTTCAGGCTTGAGCTCA * 82155756 ACTCGGCCTGGTTAAGCCCCTAGCCTTACCTTATATCTATGGCCCTATTTCTACTTCTCAATTTG 66 ACTCGGCCTGGTTAAGCCCCTAGCCTTACCTTATATCTACGGCCCTATTTCTACTTCTCAATTTG 82155821 AATATGAAGTTACTTGATCCTTCAAATCTTGGTCTTTATCAAATGGTCAAGGTTCTATTTCCATG 131 AATATGAAGTTACTTGATCCTTCAAATCTTGGTCTTTATCAAATGGTCAAGGTTCTATTTCCATG 82155886 AATGCAGTTGAAAGAAAGAGCAGAAAAGCTTGAAAATTGGAGAATGA 196 AATGCAGTTGAAAGAAAGAGCAGAAAAGCTTGAAAATTGGAGAATGA 82155933 A 1 A 82155934 ACAAACGCTA Statistics Matches: 242, Mismatches: 1, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 242 242 1.00 ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36 Consensus pattern (242 bp): AGCTGGATTTTTTTTAATCTTATTGATTTTGTATCAAGCTCAAGTTTCTTTCAGGCTTGAGCTCA ACTCGGCCTGGTTAAGCCCCTAGCCTTACCTTATATCTACGGCCCTATTTCTACTTCTCAATTTG AATATGAAGTTACTTGATCCTTCAAATCTTGGTCTTTATCAAATGGTCAAGGTTCTATTTCCATG AATGCAGTTGAAAGAAAGAGCAGAAAAGCTTGAAAATTGGAGAATGA Found at i:82164286 original size:2 final size:2 Alignment explanation
Indices: 82164275--82164311 Score: 67 Period size: 2 Copynumber: 19.0 Consensus size: 2 82164265 TTAAATTTGA 82164275 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 82164312 TTTAAAATAA Statistics Matches: 34, Mismatches: 0, Indels: 2 0.94 0.00 0.06 Matches are distributed among these distances: 1 1 0.03 2 33 0.97 ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51 Consensus pattern (2 bp): AT Found at i:82170425 original size:38 final size:39 Alignment explanation
Indices: 82170381--82170455 Score: 143 Period size: 38 Copynumber: 1.9 Consensus size: 39 82170371 AAAAAGAAAG 82170381 GAAACTTTTTTAAATTAC-AAAAAAATATTATTGTTCCT 1 GAAACTTTTTTAAATTACAAAAAAAATATTATTGTTCCT 82170419 GAAACTTTTTTAAATTACAAAAAAAATATTATTGTTC 1 GAAACTTTTTTAAATTACAAAAAAAATATTATTGTTC 82170456 TTGAGTTCGT Statistics Matches: 36, Mismatches: 0, Indels: 1 0.97 0.00 0.03 Matches are distributed among these distances: 38 18 0.50 39 18 0.50 ACGTcount: A:0.44, C:0.09, G:0.05, T:0.41 Consensus pattern (39 bp): GAAACTTTTTTAAATTACAAAAAAAATATTATTGTTCCT Found at i:82171117 original size:11 final size:11 Alignment explanation
Indices: 82171101--82171129 Score: 58 Period size: 11 Copynumber: 2.6 Consensus size: 11 82171091 TTTATTAAGT 82171101 TTTATTTCAGA 1 TTTATTTCAGA 82171112 TTTATTTCAGA 1 TTTATTTCAGA 82171123 TTTATTT 1 TTTATTT 82171130 TATAAATCTA Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 18 1.00 ACGTcount: A:0.24, C:0.07, G:0.07, T:0.62 Consensus pattern (11 bp): TTTATTTCAGA Found at i:82177397 original size:32 final size:32 Alignment explanation
Indices: 82177361--82177425 Score: 130 Period size: 32 Copynumber: 2.0 Consensus size: 32 82177351 TGTATGCATT 82177361 TTAGCATTTTAATAGTTAATGGATGATGGGCA 1 TTAGCATTTTAATAGTTAATGGATGATGGGCA 82177393 TTAGCATTTTAATAGTTAATGGATGATGGGCA 1 TTAGCATTTTAATAGTTAATGGATGATGGGCA 82177425 T 1 T 82177426 GGTAAGCATT Statistics Matches: 33, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 32 33 1.00 ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38 Consensus pattern (32 bp): TTAGCATTTTAATAGTTAATGGATGATGGGCA Found at i:82178937 original size:26 final size:26 Alignment explanation
Indices: 82178907--82178961 Score: 85 Period size: 26 Copynumber: 2.1 Consensus size: 26 82178897 TTTATAGTTT 82178907 TACCCCTAGGAGATAAATT-ACCTAAA 1 TACCCCTAGG-GATAAATTGACCTAAA * 82178933 TACCCCTAGGGTTAAATTGACCTAAA 1 TACCCCTAGGGATAAATTGACCTAAA 82178959 TAC 1 TAC 82178962 ATGTTTGACT Statistics Matches: 27, Mismatches: 1, Indels: 2 0.90 0.03 0.07 Matches are distributed among these distances: 25 7 0.26 26 20 0.74 ACGTcount: A:0.38, C:0.24, G:0.13, T:0.25 Consensus pattern (26 bp): TACCCCTAGGGATAAATTGACCTAAA Found at i:82185102 original size:43 final size:43 Alignment explanation
Indices: 82184960--82185167 Score: 203 Period size: 43 Copynumber: 5.0 Consensus size: 43 82184950 TAAAGCTCGT * * * * * 82184960 ACAATGCC-ATATCTCAGATATGGTCTTACATGTCATCACATA- 1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA-AC * * * * * * 82185002 TCGATGCCACTATCCCAGACAGGGTCTTACACGAAAT--C-A- 1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAC * * * * * 82185041 ACGATGCTAATGTCCCAGAGATGGTCTTGCACGTAATCACAAT 1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAC 82185084 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAC 1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAC * * 82185127 ACAATGCCAATGTCCCAGACATGGTCTTACATGTAACCACA 1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA 82185168 TCTCTGTAAC Statistics Matches: 137, Mismatches: 24, Indels: 9 0.81 0.14 0.05 Matches are distributed among these distances: 39 30 0.22 41 2 0.01 42 7 0.05 43 98 0.72 ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24 Consensus pattern (43 bp): ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAC Found at i:82185116 original size:82 final size:85 Alignment explanation
Indices: 82184960--82185168 Score: 221 Period size: 82 Copynumber: 2.5 Consensus size: 85 82184950 TAAAGCTCGT * * * * * * * 82184960 ACAATGCC-ATATCTCAGATATGGTCTTACATGTCATCACATATCGATGCCACTATCCCAGACAG 1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCAATGCCAATATCCCAGACAG 82185024 GGTCTTACACGAAAT-C-A- 66 GGTCTTACACGAAATACAAC * * * * * 82185041 ACGATGCTAATGTCCCAGAGATGGTCTTGCACGTAATCACA-ATACAATGCCAATGTCCCAGACA 1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CAATGCCAATATCCCAGACA * * 82185105 TGGTCTTACACGTAATCACAAC 65 GGGTCTTACACGAAAT-ACAAC * * 82185127 ACAATGCCAATGTCCCAGACATGGTCTTACATGTAACCACAT 1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAT 82185169 CTCTGTAACC Statistics Matches: 102, Mismatches: 19, Indels: 8 0.79 0.15 0.06 Matches are distributed among these distances: 81 8 0.08 82 57 0.56 84 1 0.01 85 1 0.01 86 35 0.34 ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24 Consensus pattern (85 bp): ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCAATGCCAATATCCCAGACAG GGTCTTACACGAAATACAAC Found at i:82195589 original size:25 final size:25 Alignment explanation
Indices: 82195561--82195608 Score: 71 Period size: 25 Copynumber: 1.9 Consensus size: 25 82195551 TAAGTTAATC 82195561 AGAGTTTAAGTGGAA-AACTAAAAAT 1 AGAGTTTAAGTGGAAGAAC-AAAAAT * 82195586 AGAGTTTAATTGGAAGAACAAAA 1 AGAGTTTAAGTGGAAGAACAAAA 82195609 GTTGAAAAAA Statistics Matches: 21, Mismatches: 1, Indels: 2 0.88 0.04 0.08 Matches are distributed among these distances: 25 18 0.86 26 3 0.14 ACGTcount: A:0.52, C:0.04, G:0.21, T:0.23 Consensus pattern (25 bp): AGAGTTTAAGTGGAAGAACAAAAAT Found at i:82197367 original size:4 final size:4 Alignment explanation
Indices: 82197352--82197402 Score: 75 Period size: 4 Copynumber: 12.0 Consensus size: 4 82197342 AATAGGGAGA 82197352 AAAG AAAGG AAAG AAAG AAAAG AAAG AAAG AAAG AAAAG AAAG AAAG AAAG 1 AAAG AAA-G AAAG AAAG -AAAG AAAG AAAG AAAG -AAAG AAAG AAAG AAAG 82197403 GAGAAACTAG Statistics Matches: 44, Mismatches: 0, Indels: 6 0.88 0.00 0.12 Matches are distributed among these distances: 4 32 0.73 5 12 0.27 ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00 Consensus pattern (4 bp): AAAG Found at i:82197370 original size:13 final size:13 Alignment explanation
Indices: 82197352--82197402 Score: 77 Period size: 13 Copynumber: 4.0 Consensus size: 13 82197342 AATAGGGAGA 82197352 AAAGAAAGGAAAG 1 AAAGAAAGGAAAG * 82197365 AAAGAAAAGAAAG 1 AAAGAAAGGAAAG * 82197378 AAAGAAAGAAAAG 1 AAAGAAAGGAAAG 82197391 AAAGAAA-GAAAG 1 AAAGAAAGGAAAG 82197403 GAGAAACTAG Statistics Matches: 34, Mismatches: 4, Indels: 1 0.87 0.10 0.03 Matches are distributed among these distances: 12 4 0.12 13 30 0.88 ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00 Consensus pattern (13 bp): AAAGAAAGGAAAG Found at i:82197382 original size:17 final size:17 Alignment explanation
Indices: 82197349--82197402 Score: 99 Period size: 17 Copynumber: 3.1 Consensus size: 17 82197339 CAAAATAGGG 82197349 AGAAAAGAAAGGAAAGAA 1 AGAAAAGAAA-GAAAGAA 82197367 AGAAAAGAAAGAAAGAA 1 AGAAAAGAAAGAAAGAA 82197384 AGAAAAGAAAGAAAGAA 1 AGAAAAGAAAGAAAGAA 82197401 AG 1 AG 82197403 GAGAAACTAG Statistics Matches: 36, Mismatches: 0, Indels: 1 0.97 0.00 0.03 Matches are distributed among these distances: 17 26 0.72 18 10 0.28 ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00 Consensus pattern (17 bp): AGAAAAGAAAGAAAGAA Found at i:82197681 original size:30 final size:28 Alignment explanation
Indices: 82197627--82197683 Score: 80 Period size: 30 Copynumber: 2.0 Consensus size: 28 82197617 AATTGTGGAA 82197627 TAAATTGTAAAATTTGAATATTAGGGAC 1 TAAATTGTAAAATTTGAATATTAGGGAC 82197655 TAAATTGTGAAAATTTTGAA-ATTTAGGGA 1 TAAATTGT-AAAA-TTTGAATA-TTAGGGA 82197684 TTTAAGTGAA Statistics Matches: 26, Mismatches: 0, Indels: 4 0.87 0.00 0.13 Matches are distributed among these distances: 28 8 0.31 29 5 0.19 30 13 0.50 ACGTcount: A:0.42, C:0.02, G:0.19, T:0.37 Consensus pattern (28 bp): TAAATTGTAAAATTTGAATATTAGGGAC Found at i:82203451 original size:26 final size:26 Alignment explanation
Indices: 82203415--82203524 Score: 177 Period size: 26 Copynumber: 4.2 Consensus size: 26 82203405 TGATACAAAT 82203415 TGATAATAGGTTAGGTAAATGTTCCA 1 TGATAATAGGTTAGGTAAATGTTCCA 82203441 TGATAATAGGTTAGGTAAATGTTCCA 1 TGATAATAGGTTAGGTAAATGTTCCA * * 82203467 TGATAATGGGTTAGGTAAATGTTTCA 1 TGATAATAGGTTAGGTAAATGTTCCA * 82203493 TGATAATGGGTTAGGTAAATGATT-CA 1 TGATAATAGGTTAGGTAAATG-TTCCA 82203519 TGATAA 1 TGATAA 82203525 GAATTTCATG Statistics Matches: 81, Mismatches: 2, Indels: 2 0.95 0.02 0.02 Matches are distributed among these distances: 26 79 0.98 27 2 0.02 ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35 Consensus pattern (26 bp): TGATAATAGGTTAGGTAAATGTTCCA Found at i:82205192 original size:27 final size:27 Alignment explanation
Indices: 82205137--82205256 Score: 170 Period size: 27 Copynumber: 4.4 Consensus size: 27 82205127 GAGGAAGCGT * 82205137 TCTGGTGGCTATGCCAC-AATATCTGA 1 TCTGGTGGCTCTGCCACAAATATCTGA 82205163 TCTGGTGGCTCTGCCACAAATATCTGA 1 TCTGGTGGCTCTGCCACAAATATCTGA * * 82205190 TCTGGTGGCTCTGCCACATATATCTGT 1 TCTGGTGGCTCTGCCACAAATATCTGA * * 82205217 TCTGGTGGCTCTGCCACGATTATCTGTA 1 TCTGGTGGCTCTGCCACAAATATCTG-A * 82205245 TCTGGTGACTCT 1 TCTGGTGGCTCT 82205257 ATCACATTAT Statistics Matches: 84, Mismatches: 8, Indels: 2 0.89 0.09 0.02 Matches are distributed among these distances: 26 16 0.19 27 57 0.68 28 11 0.13 ACGTcount: A:0.17, C:0.25, G:0.23, T:0.34 Consensus pattern (27 bp): TCTGGTGGCTCTGCCACAAATATCTGA Found at i:82205226 original size:54 final size:55 Alignment explanation
Indices: 82205137--82205275 Score: 194 Period size: 54 Copynumber: 2.6 Consensus size: 55 82205127 GAGGAAGCGT * * 82205137 TCTGGTGGCTATGCCACA-ATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A 1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA * * 82205190 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA 1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA * ** 82205245 TCTGGTGACTCTATCACAT-TATCTGTTCTGG 1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG 82205276 CAGCCATGCT Statistics Matches: 77, Mismatches: 7, Indels: 3 0.89 0.08 0.03 Matches are distributed among these distances: 53 17 0.22 54 43 0.56 55 17 0.22 ACGTcount: A:0.18, C:0.24, G:0.22, T:0.35 Consensus pattern (55 bp): TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA Found at i:82205265 original size:27 final size:27 Alignment explanation
Indices: 82205137--82205275 Score: 169 Period size: 27 Copynumber: 5.2 Consensus size: 27 82205127 GAGGAAGCGT * * 82205137 TCTGGTGGCTATGCCACAATATCTG-A 1 TCTGGTGGCTCTGCCACATTATCTGTA * 82205163 TCTGGTGGCTCTGCCACAAATATCTG-A 1 TCTGGTGGCTCTGCCAC-ATTATCTGTA 82205190 TCTGGTGGCTCTGCCACATATATCTGT- 1 TCTGGTGGCTCTGCCACAT-TATCTGTA 82205217 TCTGGTGGCTCTGCCACGATTATCTGTA 1 TCTGGTGGCTCTGCCAC-ATTATCTGTA * ** 82205245 TCTGGTGACTCTATCACATTATCTGT- 1 TCTGGTGGCTCTGCCACATTATCTGTA 82205271 TCTGG 1 TCTGG 82205276 CAGCCATGCT Statistics Matches: 103, Mismatches: 5, Indels: 10 0.87 0.04 0.08 Matches are distributed among these distances: 26 22 0.21 27 65 0.63 28 16 0.16 ACGTcount: A:0.18, C:0.24, G:0.22, T:0.35 Consensus pattern (27 bp): TCTGGTGGCTCTGCCACATTATCTGTA Found at i:82209282 original size:26 final size:26 Alignment explanation
Indices: 82209246--82209355 Score: 184 Period size: 26 Copynumber: 4.2 Consensus size: 26 82209236 TGATACAAAT 82209246 TGATAATAGGTTAGGTAAATGTTCCA 1 TGATAATAGGTTAGGTAAATGTTCCA 82209272 TGATAATAGGTTAGGTAAATGTTCCA 1 TGATAATAGGTTAGGTAAATGTTCCA * * 82209298 TGATAATGGGTTAGGTAAATGTTTCA 1 TGATAATAGGTTAGGTAAATGTTCCA * * 82209324 TGATAATGGGTTAGGTAAATGTTTCA 1 TGATAATAGGTTAGGTAAATGTTCCA 82209350 TGATAA 1 TGATAA 82209356 GAATTTCATG Statistics Matches: 82, Mismatches: 2, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 26 82 1.00 ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36 Consensus pattern (26 bp): TGATAATAGGTTAGGTAAATGTTCCA Found at i:82211028 original size:27 final size:26 Alignment explanation
Indices: 82210973--82211111 Score: 170 Period size: 27 Copynumber: 5.2 Consensus size: 26 82210963 GAGGAAGCGT * 82210973 TCTGGTGGCTATGCCACAATATCTGA 1 TCTGGTGGCTCTGCCACAATATCTGA 82210999 TCTGGTGGCTCTGCCACAAATATCTGA 1 TCTGGTGGCTCTGCCAC-AATATCTGA * * 82211026 TCTGGTGGCTCTGCCATATATATCTGT 1 TCTGGTGGCTCTGCCACA-ATATCTGA * 82211053 TCTGGTGGCTCTGCCACGATTATCTGTA 1 TCTGGTGGCTCTGCCAC-AATATCTG-A * * * * 82211081 TCTGGTGACTCTGTCACATTATCTGT 1 TCTGGTGGCTCTGCCACAATATCTGA 82211107 TCTGG 1 TCTGG 82211112 CAGCCATGCT Statistics Matches: 100, Mismatches: 9, Indels: 8 0.85 0.08 0.07 Matches are distributed among these distances: 26 22 0.22 27 62 0.62 28 16 0.16 ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36 Consensus pattern (26 bp): TCTGGTGGCTCTGCCACAATATCTGA Found at i:82211060 original size:54 final size:55 Alignment explanation
Indices: 82210973--82211111 Score: 194 Period size: 54 Copynumber: 2.6 Consensus size: 55 82210963 GAGGAAGCGT * * 82210973 TCTGGTGGCTATGCCACA-ATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A 1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA * * * 82211026 TCTGGTGGCTCTGCCATATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA 1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA * * 82211081 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG 1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG 82211112 CAGCCATGCT Statistics Matches: 76, Mismatches: 8, Indels: 3 0.87 0.09 0.03 Matches are distributed among these distances: 53 16 0.21 54 43 0.57 55 17 0.22 ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36 Consensus pattern (55 bp): TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA Found at i:82212996 original size:9 final size:9 Alignment explanation
Indices: 82212982--82213017 Score: 56 Period size: 9 Copynumber: 4.1 Consensus size: 9 82212972 AATAGGGAGA 82212982 AAAGAAAGG 1 AAAGAAAGG * 82212991 AAAGAAAGA 1 AAAGAAAGG 82213000 AAAGAAA-G 1 AAAGAAAGG 82213008 AAAGAAAGG 1 AAAGAAAGG 82213017 A 1 A 82213018 GAAACTAGGG Statistics Matches: 24, Mismatches: 2, Indels: 2 0.86 0.07 0.07 Matches are distributed among these distances: 8 7 0.29 9 17 0.71 ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00 Consensus pattern (9 bp): AAAGAAAGG Found at i:82212997 original size:4 final size:4 Alignment explanation
Indices: 82212982--82213015 Score: 50 Period size: 4 Copynumber: 8.0 Consensus size: 4 82212972 AATAGGGAGA 82212982 AAAG AAAGG AAAG AAAG AAAAG AAAG AAAG AAAG 1 AAAG AAA-G AAAG AAAG -AAAG AAAG AAAG AAAG 82213016 GAGAAACTAG Statistics Matches: 28, Mismatches: 0, Indels: 4 0.88 0.00 0.12 Matches are distributed among these distances: 4 20 0.71 5 8 0.29 ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00 Consensus pattern (4 bp): AAAG Found at i:82213000 original size:13 final size:13 Alignment explanation
Indices: 82212982--82213017 Score: 63 Period size: 13 Copynumber: 2.8 Consensus size: 13 82212972 AATAGGGAGA 82212982 AAAGAAAGGAAAG 1 AAAGAAAGGAAAG * 82212995 AAAGAAAAGAAAG 1 AAAGAAAGGAAAG 82213008 AAAGAAAGGA 1 AAAGAAAGGA 82213018 GAAACTAGGG Statistics Matches: 21, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 13 21 1.00 ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00 Consensus pattern (13 bp): AAAGAAAGGAAAG Found at i:82213296 original size:30 final size:28 Alignment explanation
Indices: 82213242--82213298 Score: 71 Period size: 30 Copynumber: 2.0 Consensus size: 28 82213232 AATTTTGGAA * 82213242 TAAATTGTAAATTTTGAGTATTAGGGAC 1 TAAATTGTAAATTTTGAATATTAGGGAC 82213270 TAAATTGTGAAATTTTTGAA-ATTTAGGGA 1 TAAATTGT-AAA-TTTTGAATA-TTAGGGA 82213299 TTTAAGTGAA Statistics Matches: 25, Mismatches: 1, Indels: 4 0.83 0.03 0.13 Matches are distributed among these distances: 28 8 0.32 29 4 0.16 30 13 0.52 ACGTcount: A:0.37, C:0.02, G:0.21, T:0.40 Consensus pattern (28 bp): TAAATTGTAAATTTTGAATATTAGGGAC Found at i:82214413 original size:41 final size:40 Alignment explanation
Indices: 82214366--82214582 Score: 199 Period size: 41 Copynumber: 5.3 Consensus size: 40 82214356 GCGTTTGAAA 82214366 CAAAACGCCACTAAAAGCTGAGCAATAGTGGCGTTTTCATT 1 CAAAACGCCACTAAAAGCTGAGCAATAGTGGCGTTTT-ATT * * * 82214407 CAAAACGCCGCTAAAAACTGAGTAATAGTGGCGTTTTTATT 1 CAAAACGCCACTAAAAGCTGAGCAATAGTGGCG-TTTTATT * * * * 82214448 CAAAATGCC-GTAAAAAACTGAGAAATAGTGGCGTTTTATT 1 CAAAACGCCACT-AAAAGCTGAGCAATAGTGGCGTTTTATT * * * * 82214488 CAAAACGCCGCAAAAAGCTGAG-ATATAGTGGCGCTTTAGGT 1 CAAAACGCCACTAAAAGCTGAGCA-ATAGTGGCGTTTTA-TT * * * 82214529 CCAAACGCCAC-AAAAGGTTGAGCTATAGTGGCGTTTT-TGT 1 CAAAACGCCACTAAAA-GCTGAGCAATAGTGGCGTTTTAT-T * * 82214569 AAAAACGCCGCTAA 1 CAAAACGCCACTAA 82214583 TATTTATTAT Statistics Matches: 146, Mismatches: 21, Indels: 18 0.79 0.11 0.10 Matches are distributed among these distances: 39 1 0.01 40 51 0.35 41 90 0.62 42 4 0.03 ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24 Consensus pattern (40 bp): CAAAACGCCACTAAAAGCTGAGCAATAGTGGCGTTTTATT Found at i:82214557 original size:81 final size:80 Alignment explanation
Indices: 82214366--82214582 Score: 237 Period size: 81 Copynumber: 2.7 Consensus size: 80 82214356 GCGTTTGAAA 82214366 CAAAACGCCACTAAAAGCTGAGCAATAGTGGCGTTTTCATTCAAAACGCCGCTAAAAACTGAGTA 1 CAAAACGCCAC-AAAAGCTGAGCAATAGTGGCGTTTT-ATTCAAAACGCCGCTAAAAACTGAGTA * * 82214431 ATAGTGGCGTTTTTATT 64 ATAGTGGCGTCTTTAGT * * * 82214448 CAAAATGCCGTA-AAAAACTGAGAAATAGTGGCGTTTTATTCAAAACGCCGC-AAAAAGCTGAG- 1 CAAAACGCC--ACAAAAGCTGAGCAATAGTGGCGTTTTATTCAAAACGCCGCTAAAAA-CTGAGT 82214510 ATATAGTGGCG-CTTTAGGT 63 A-ATAGTGGCGTCTTTA-GT * * * * 82214529 CCAAACGCCACAAAAGGTTGAGCTATAGTGGCGTTTT-TGTAAAAACGCCGCTAA 1 CAAAACGCCACAAAA-GCTGAGCAATAGTGGCGTTTTAT-TCAAAACGCCGCTAA 82214583 TATTTATTAT Statistics Matches: 114, Mismatches: 12, Indels: 18 0.79 0.08 0.12 Matches are distributed among these distances: 79 1 0.01 80 15 0.13 81 64 0.56 82 33 0.29 84 1 0.01 ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24 Consensus pattern (80 bp): CAAAACGCCACAAAAGCTGAGCAATAGTGGCGTTTTATTCAAAACGCCGCTAAAAACTGAGTAAT AGTGGCGTCTTTAGT Found at i:82215147 original size:29 final size:29 Alignment explanation
Indices: 82215108--82215163 Score: 94 Period size: 29 Copynumber: 1.9 Consensus size: 29 82215098 AAAATATGAA * 82215108 GCCTAACCCCTAAATCATAACCGATGACC 1 GCCTAACCCCTAAATCATAACCCATGACC * 82215137 GCCTAATCCCTAAATCATAACCCATGA 1 GCCTAACCCCTAAATCATAACCCATGA 82215164 TCTAAACTCT Statistics Matches: 25, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 29 25 1.00 ACGTcount: A:0.36, C:0.36, G:0.09, T:0.20 Consensus pattern (29 bp): GCCTAACCCCTAAATCATAACCCATGACC Found at i:82215359 original size:14 final size:15 Alignment explanation
Indices: 82215333--82215376 Score: 63 Period size: 15 Copynumber: 2.9 Consensus size: 15 82215323 CTTTAAACCC 82215333 TTATAATACCCTAAA- 1 TTATAA-ACCCTAAAT 82215348 TTATAAACCCTAAAT 1 TTATAAACCCTAAAT * 82215363 TTGTAAACCCTAAA 1 TTATAAACCCTAAA 82215377 AATAAATTTC Statistics Matches: 27, Mismatches: 1, Indels: 2 0.90 0.03 0.07 Matches are distributed among these distances: 14 8 0.30 15 19 0.70 ACGTcount: A:0.45, C:0.20, G:0.02, T:0.32 Consensus pattern (15 bp): TTATAAACCCTAAAT Found at i:82216380 original size:20 final size:20 Alignment explanation
Indices: 82216335--82216386 Score: 70 Period size: 19 Copynumber: 2.6 Consensus size: 20 82216325 CCCCACCCAA * 82216335 ATTTCCCCAAATCCCTAACT 1 ATTTCCCCAAATCCCTAAAT * 82216355 -TTTCCCCTAATCCCTAAAT 1 ATTTCCCCAAATCCCTAAAT * 82216374 ATTTCCCCGAATC 1 ATTTCCCCAAATC 82216387 AAAATCGAAA Statistics Matches: 28, Mismatches: 3, Indels: 2 0.85 0.09 0.06 Matches are distributed among these distances: 19 17 0.61 20 11 0.39 ACGTcount: A:0.27, C:0.38, G:0.02, T:0.33 Consensus pattern (20 bp): ATTTCCCCAAATCCCTAAAT Found at i:82218779 original size:23 final size:23 Alignment explanation
Indices: 82218749--82218797 Score: 82 Period size: 23 Copynumber: 2.1 Consensus size: 23 82218739 ACATTAATCT 82218749 AATGTATGAA-TTGCAGCCCTTTA 1 AATGTATGAATTTG-AGCCCTTTA 82218772 AATGTATGAATTTGAGCCCTTTA 1 AATGTATGAATTTGAGCCCTTTA 82218795 AAT 1 AAT 82218798 AAACTTGAAC Statistics Matches: 25, Mismatches: 0, Indels: 2 0.93 0.00 0.07 Matches are distributed among these distances: 23 22 0.88 24 3 0.12 ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37 Consensus pattern (23 bp): AATGTATGAATTTGAGCCCTTTA Found at i:82218884 original size:27 final size:27 Alignment explanation
Indices: 82218845--82218898 Score: 99 Period size: 27 Copynumber: 2.0 Consensus size: 27 82218835 TATTTGAAGT 82218845 ATGAATAACTATGAATAAGTTTTTATA 1 ATGAATAACTATGAATAAGTTTTTATA * 82218872 ATGAATAAGTATGAATAAGTTTTTATA 1 ATGAATAACTATGAATAAGTTTTTATA 82218899 TTTGATTCAA Statistics Matches: 26, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 27 26 1.00 ACGTcount: A:0.44, C:0.02, G:0.13, T:0.41 Consensus pattern (27 bp): ATGAATAACTATGAATAAGTTTTTATA Found at i:82219380 original size:241 final size:241 Alignment explanation
Indices: 82218957--82219628 Score: 1290 Period size: 241 Copynumber: 2.8 Consensus size: 241 82218947 ATGAATTAAT * 82218957 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAAGCTT 1 TTTATTACCATATAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAAGCTT * 82219022 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGATGGAAACCTGACGGGTTGCCTTATATCGAG 66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG 82219087 CCGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC 131 CCGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC 82219152 AAAAATACTTGAAAAAAATTCTATCCAACTCATTTACTATTGAATA 196 AAAAATACTTGAAAAAAATTCTATCCAACTCATTTACTATTGAATA * 82219198 TTTATTACCATATAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAAGTTT 1 TTTATTACCATATAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAAGCTT * 82219263 ATTGTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG 66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG 82219328 CCGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC 131 CCGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC 82219393 AAAAATACTTGAAAAAAATTCTATCCAACTCATTTACTATTGAATA 196 AAAAATACTTGAAAAAAATTCTATCCAACTCATTTACTATTGAATA 82219439 TTTATTACCATATAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAAGCTT 1 TTTATTACCATATAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAAGCTT 82219504 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG 66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG ** 82219569 CTATAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAA 131 CCGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAA 82219629 TTTATAACTA Statistics Matches: 423, Mismatches: 8, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 241 423 1.00 ACGTcount: A:0.35, C:0.18, G:0.14, T:0.32 Consensus pattern (241 bp): TTTATTACCATATAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAAGCTT ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG CCGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC AAAAATACTTGAAAAAAATTCTATCCAACTCATTTACTATTGAATA Found at i:82219695 original size:9 final size:9 Alignment explanation
Indices: 82219672--82219784 Score: 109 Period size: 9 Copynumber: 12.2 Consensus size: 9 82219662 ATTGATCATT * 82219672 ACTTAAATA 1 ACTTACATA * 82219681 AATTACATA 1 ACTTACATA 82219690 ACTTACATA 1 ACTTACATA * * 82219699 ACTCATATA 1 ACTTACATA 82219708 ACTTACATA 1 ACTTACATA * 82219717 ATTTACATAACA 1 ACTTACAT---A 82219729 ACTTACATA 1 ACTTACATA * 82219738 ACTCACATA 1 ACTTACATA 82219747 ACTTACATA 1 ACTTACATA * 82219756 ATTTACATA 1 ACTTACATA * * 82219765 ACTCACATT 1 ACTTACATA * 82219774 ACGTACATA 1 ACTTACATA 82219783 AC 1 AC 82219785 AACTTACATA Statistics Matches: 83, Mismatches: 18, Indels: 6 0.78 0.17 0.06 Matches are distributed among these distances: 9 75 0.90 12 8 0.10 ACGTcount: A:0.46, C:0.21, G:0.01, T:0.32 Consensus pattern (9 bp): ACTTACATA Found at i:82219741 original size:39 final size:39 Alignment explanation
Indices: 82219689--82219766 Score: 147 Period size: 39 Copynumber: 2.0 Consensus size: 39 82219679 TAAATTACAT * 82219689 AACTTACATAACTCATATAACTTACATAATTTACATAAC 1 AACTTACATAACTCACATAACTTACATAATTTACATAAC 82219728 AACTTACATAACTCACATAACTTACATAATTTACATAAC 1 AACTTACATAACTCACATAACTTACATAATTTACATAAC 82219767 TCACATTACG Statistics Matches: 38, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 39 38 1.00 ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32 Consensus pattern (39 bp): AACTTACATAACTCACATAACTTACATAATTTACATAAC Found at i:82219766 original size:57 final size:57 Alignment explanation
Indices: 82219685--82219796 Score: 161 Period size: 57 Copynumber: 2.0 Consensus size: 57 82219675 TAAATAAATT * * ** 82219685 ACATAACTTACATAACTCATATAACTTACATAATTTACATAACAACTTACATAACTC 1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC * * * 82219742 ACATAACTTACATAATTTACATAACTCACATTACGTACATAACAACTTACATAAC 1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAAC 82219797 CTAACTAATA Statistics Matches: 48, Mismatches: 7, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 57 48 1.00 ACGTcount: A:0.46, C:0.23, G:0.01, T:0.30 Consensus pattern (57 bp): ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC Found at i:82232444 original size:43 final size:43 Alignment explanation
Indices: 82232419--82232669 Score: 403 Period size: 43 Copynumber: 5.8 Consensus size: 43 82232409 GTAGAAAAAG * * 82232419 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTTCTACAAA 1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA * * * 82232462 CGCCGCTTAAAGCCTTGACCTTTAGCGGCGCTTTTCCAAAAAAA 1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCC-CACAAA * * * 82232506 TGCCGCTAAAAGCCTAGACCTTTAGCGGCGCTTCTCCCACAAA 1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA * 82232549 CGCCGCTAAAAGCCTAGACCTTTAGCGGCGCTTTTCCCACAAA 1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA 82232592 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA 1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA * 82232635 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTT 1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTT 82232670 TTTCCAATAA Statistics Matches: 193, Mismatches: 14, Indels: 2 0.92 0.07 0.01 Matches are distributed among these distances: 43 156 0.81 44 37 0.19 ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25 Consensus pattern (43 bp): CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA Found at i:82232604 original size:130 final size:129 Alignment explanation
Indices: 82232419--82232664 Score: 411 Period size: 130 Copynumber: 1.9 Consensus size: 129 82232409 GTAGAAAAAG * * * * 82232419 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTTCTACAAACGCCGCTTAAAGCCTTGACCTT 1 CGCCGCTAAAAGCCTAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTT * 82232484 TAGCGGCGCTTTTCCAAAAAAATGCCGCTAAAAGCCTAGACCTTTAGCGGCGCTTCTCCCACAAA 66 TAGCGGCGCTTTTCC-AAAAAACGCCGCTAAAAGCCTAGACCTTTAGCGGCGCTTCTCCCACAAA 82232549 CGCCGCTAAAAGCCTAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTT 1 CGCCGCTAAAAGCCTAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTT * * * 82232614 TAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCG 66 TAGCGGCGCTTTTCCAAAAAACGCCGCTAAAAGCCTAGACCTTTAGCGGCG 82232665 TTTTTTTTCC Statistics Matches: 108, Mismatches: 8, Indels: 1 0.92 0.07 0.01 Matches are distributed among these distances: 129 32 0.30 130 76 0.70 ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23 Consensus pattern (129 bp): CGCCGCTAAAAGCCTAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTT TAGCGGCGCTTTTCCAAAAAACGCCGCTAAAAGCCTAGACCTTTAGCGGCGCTTCTCCCACAAA Found at i:82232634 original size:86 final size:87 Alignment explanation
Indices: 82232413--82232669 Score: 408 Period size: 87 Copynumber: 3.0 Consensus size: 87 82232403 GCGTTTGTAG * * * * 82232413 AAAAAGCGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTTCTACAAACGCCGCTTAAAGCCTT 1 AAAAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTT 82232478 GACCTTTAGCGGCGCTTTTCCA 66 GACCTTTAGCGGCGCTTTTCCA * * * * 82232500 AAAAAATGCCGCTAAAAGCCTAGACCTTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAAGCCTA 1 AAAAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTT 82232565 GACCTTTAGCGGCGCTTTTCC- 66 GACCTTTAGCGGCGCTTTTCCA * * 82232586 CACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTT 1 AAAAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTT * 82232651 GACCTTTAGCGGCGTTTTT 66 GACCTTTAGCGGCGCTTTT 82232670 TTTCCAATAA Statistics Matches: 155, Mismatches: 15, Indels: 1 0.91 0.09 0.01 Matches are distributed among these distances: 86 77 0.50 87 78 0.50 ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24 Consensus pattern (87 bp): AAAAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTT GACCTTTAGCGGCGCTTTTCCA Found at i:82248113 original size:26 final size:26 Alignment explanation
Indices: 82248082--82248189 Score: 180 Period size: 26 Copynumber: 4.2 Consensus size: 26 82248072 TGAAATGCCC * 82248082 ATCATGGAACATTTACCTAAACCATT 1 ATCATGGAACATTTACCTAACCCATT 82248108 ATCATGGAACATTTACCTAACCCATT 1 ATCATGGAACATTTACCTAACCCATT * * * 82248134 ATCATGAAATATTTACCTAATCCATT 1 ATCATGGAACATTTACCTAACCCATT 82248160 ATCATGGAACATTTACCTAACCCATT 1 ATCATGGAACATTTACCTAACCCATT 82248186 ATCA 1 ATCA 82248190 ATTTGTACCA Statistics Matches: 75, Mismatches: 7, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 26 75 1.00 ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32 Consensus pattern (26 bp): ATCATGGAACATTTACCTAACCCATT Found at i:82254815 original size:21 final size:20 Alignment explanation
Indices: 82254786--82254831 Score: 51 Period size: 21 Copynumber: 2.3 Consensus size: 20 82254776 CGAAATGCAA 82254786 TCAACCTAACA-TGAATTAAAT 1 TCAACCTAA-ATTG-ATTAAAT * 82254807 TCAAGCTAAATTGATTAAAT 1 TCAACCTAAATTGATTAAAT 82254827 T-AACC 1 TCAACC 82254832 ATTCTAACAA Statistics Matches: 22, Mismatches: 2, Indels: 4 0.79 0.07 0.14 Matches are distributed among these distances: 19 3 0.14 20 9 0.41 21 10 0.45 ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30 Consensus pattern (20 bp): TCAACCTAAATTGATTAAAT Found at i:82260833 original size:17 final size:17 Alignment explanation
Indices: 82260805--82260845 Score: 55 Period size: 17 Copynumber: 2.4 Consensus size: 17 82260795 ACCTTTTTAA * 82260805 AAAAATTATAAAATATAT 1 AAAAA-TATAAAAAATAT * 82260823 AGAAATATAAAAAATAT 1 AAAAATATAAAAAATAT 82260840 AAAAAT 1 AAAAAT 82260846 TTTATAAATT Statistics Matches: 20, Mismatches: 3, Indels: 1 0.83 0.12 0.04 Matches are distributed among these distances: 17 16 0.80 18 4 0.20 ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27 Consensus pattern (17 bp): AAAAATATAAAAAATAT Found at i:82260844 original size:37 final size:39 Alignment explanation
Indices: 82260802--82260881 Score: 94 Period size: 37 Copynumber: 2.1 Consensus size: 39 82260792 AAAACCTTTT 82260802 TAAAAAAATTATAAAAT-ATATAG-AAA-TATAAAAAATA 1 TAAAAAAATTATAAAATCAT-TAGAAAATTATAAAAAATA ** * * 82260839 TAAAAATTTTATAAATTCGTTAGAAAATTATAAAAAATA 1 TAAAAAAATTATAAAATCATTAGAAAATTATAAAAAATA 82260878 TAAA 1 TAAA 82260882 TTTTGTAAAA Statistics Matches: 36, Mismatches: 4, Indels: 4 0.82 0.09 0.09 Matches are distributed among these distances: 37 17 0.47 38 4 0.11 39 15 0.42 ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31 Consensus pattern (39 bp): TAAAAAAATTATAAAATCATTAGAAAATTATAAAAAATA Found at i:82260874 original size:9 final size:9 Alignment explanation
Indices: 82260805--82260909 Score: 52 Period size: 9 Copynumber: 11.1 Consensus size: 9 82260795 ACCTTTTTAA 82260805 AAAAATTAT 1 AAAAATTAT 82260814 -AAAATATAT 1 AAAAAT-TAT * 82260823 AGAAA-TAT 1 AAAAATTAT * 82260831 AAAAAATAT 1 AAAAATTAT * 82260840 AAAAATTTT 1 AAAAATTAT * * 82260849 ATAAATTCGTT 1 AAAAATT--AT 82260860 AGAAAATTAT 1 A-AAAATTAT * 82260870 AAAAAATAT 1 AAAAATTAT ** * 82260879 AAATTTTGTAA 1 AAA-AAT-TAT 82260890 AAAGAATTAT 1 AAA-AATTAT 82260900 AAAAATTAT 1 AAAAATTAT 82260909 A 1 A 82260910 GTACCAAAAG Statistics Matches: 72, Mismatches: 16, Indels: 16 0.69 0.15 0.15 Matches are distributed among these distances: 8 12 0.17 9 36 0.50 10 10 0.14 11 9 0.12 12 5 0.07 ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33 Consensus pattern (9 bp): AAAAATTAT Found at i:82260960 original size:11 final size:10 Alignment explanation
Indices: 82260934--82260959 Score: 52 Period size: 10 Copynumber: 2.6 Consensus size: 10 82260924 TTTTTTTATA 82260934 ATTTTTATTG 1 ATTTTTATTG 82260944 ATTTTTATTG 1 ATTTTTATTG 82260954 ATTTTT 1 ATTTTT 82260960 TTTATCATTT Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 16 1.00 ACGTcount: A:0.19, C:0.00, G:0.08, T:0.73 Consensus pattern (10 bp): ATTTTTATTG Found at i:82261125 original size:18 final size:18 Alignment explanation
Indices: 82261102--82261154 Score: 56 Period size: 19 Copynumber: 2.9 Consensus size: 18 82261092 AAAAAATTCT 82261102 AATTTATATTTTTATTAA 1 AATTTATATTTTTATTAA * 82261120 AATTTAATAATTTTT-CTAA 1 AATTT-AT-ATTTTTATTAA * 82261139 AATTTAT-TATTTATTA 1 AATTTATATTTTTATTA 82261155 TATTTTCTTT Statistics Matches: 29, Mismatches: 3, Indels: 7 0.74 0.08 0.18 Matches are distributed among these distances: 16 4 0.14 17 2 0.07 18 7 0.24 19 10 0.34 20 6 0.21 ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58 Consensus pattern (18 bp): AATTTATATTTTTATTAA Found at i:82266119 original size:2 final size:2 Alignment explanation
Indices: 82266112--82266137 Score: 52 Period size: 2 Copynumber: 13.0 Consensus size: 2 82266102 AATATGAGAA 82266112 AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT 82266138 CATTTAGTAA Statistics Matches: 24, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 24 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:82271480 original size:29 final size:28 Alignment explanation
Indices: 82271448--82271547 Score: 94 Period size: 29 Copynumber: 3.4 Consensus size: 28 82271438 GGGACGAGAT * * 82271448 TGGCACTGAGTGTGCGAGCTTGTAATGTA 1 TGGCACT-AGTGTGCGAGCTTGGAATATA * * 82271477 TGGCACTAAGTGTGCGAGTTTGGACTATA 1 TGGCACT-AGTGTGCGAGCTTGGAATATA * * 82271506 TGGCACTATGTGTGCGGGCTT-GAATCACA 1 TGGCACTA-GTGTGCGAGCTTGGAAT-ATA 82271535 TGGCACTAAGTGT 1 TGGCACT-AGTGT 82271548 ACGTGATTGA Statistics Matches: 59, Mismatches: 9, Indels: 6 0.80 0.12 0.08 Matches are distributed among these distances: 28 4 0.07 29 54 0.92 30 1 0.02 ACGTcount: A:0.22, C:0.16, G:0.32, T:0.30 Consensus pattern (28 bp): TGGCACTAGTGTGCGAGCTTGGAATATA Found at i:82280871 original size:17 final size:18 Alignment explanation
Indices: 82280851--82280884 Score: 52 Period size: 18 Copynumber: 1.9 Consensus size: 18 82280841 AAAATGGAAA 82280851 TGAAAAGC-TAATGTTTT 1 TGAAAAGCTTAATGTTTT * 82280868 TGAAAATCTTAATGTTT 1 TGAAAAGCTTAATGTTT 82280885 GAAATTATAG Statistics Matches: 15, Mismatches: 1, Indels: 1 0.88 0.06 0.06 Matches are distributed among these distances: 17 7 0.47 18 8 0.53 ACGTcount: A:0.35, C:0.06, G:0.15, T:0.44 Consensus pattern (18 bp): TGAAAAGCTTAATGTTTT Found at i:82282934 original size:57 final size:58 Alignment explanation
Indices: 82282859--82283134 Score: 178 Period size: 55 Copynumber: 4.9 Consensus size: 58 82282849 AAGGCGTTCC * * * * * 82282859 TTTTAACAAAGTTTGCCAC-AAGGCATTCATTTAACTGATATAGCCACAAAGGTATGT 1 TTTTAACAAAGATAGCCACAAAGGCATCCATTTAACAGAGATAGCCACAAAGGTATGT * * * 82282916 TTTTAACAGAGATAGCCACAAAGGCATCCTTTTAACAGAGATAGCCACAAAGGCT-TCT 1 TTTTAACAAAGATAGCCACAAAGGCATCCATTTAACAGAGATAGCCACAAAGG-TATGT * ** * * * * * * * 82282974 TTATAGTAGAGATCGCCACAAAGGCTTCCTTTTAACAAAGATAGCCACAAAGGCAT-C 1 TTTTAACAAAGATAGCCACAAAGGCATCCATTTAACAGAGATAGCCACAAAGGTATGT * * * * * * 82283031 CTTT--CAGAGATAGCCATAAAGGCTTCC-TTATAACAAAGATAACCACAAAGG--TGT 1 TTTTAACAAAGATAGCCACAAAGGCATCCATT-TAACAGAGATAGCCACAAAGGTATGT * * * * * 82283085 CCTTT--CAGAGAGAGCCACAAAGGCTTCC-TTATAATAGAGATAGCCACAAA 1 -TTTTAACAAAGATAGCCACAAAGGCATCCATT-TAACAGAGATAGCCACAAA 82283135 TGCTCACTTA Statistics Matches: 185, Mismatches: 28, Indels: 14 0.81 0.12 0.06 Matches are distributed among these distances: 53 1 0.01 54 2 0.01 55 84 0.45 57 18 0.10 58 79 0.43 59 1 0.01 ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25 Consensus pattern (58 bp): TTTTAACAAAGATAGCCACAAAGGCATCCATTTAACAGAGATAGCCACAAAGGTATGT Found at i:82282940 original size:87 final size:87 Alignment explanation
Indices: 82282856--82283134 Score: 249 Period size: 84 Copynumber: 3.3 Consensus size: 87 82282846 ACGAAGGCGT * * * ** 82282856 TCCTTTTAACAAAGTTTGCCAC-AAGGCATTCATTTA-ACT-GATATAGCCACAAAGG-TATGTT 1 TCCTTTTAACAAAGATAGCCACAAAGGC-TTC-TTTATACTAGAGATAGCCACAAAGGCT-TCCT * 82282917 TTTAACAGAGATAGCCACAAAGGCA 63 TTTAACAAAGATAGCCACAAAGGCA * * * 82282942 TCCTTTTAACAGAGATAGCCACAAAGGCTTCTTTATAGTAGAGATCGCCACAAAGGCTTCCTTTT 1 TCCTTTTAACAAAGATAGCCACAAAGGCTTCTTTATACTAGAGATAGCCACAAAGGCTTCCTTTT 82283007 AACAAAGATAGCCACAAAGGCA 66 AACAAAGATAGCCACAAAGGCA * * * * * 82283029 TCC-TTT--CAGAGATAGCCATAAAGGCTTCCTTATAAC-AAAGATAACCACAAAGG-TGTCC-T 1 TCCTTTTAACAAAGATAGCCACAAAGGCTTCTTTAT-ACTAGAGATAGCCACAAAGGCT-TCCTT * * * 82283088 TT--CAGAGAGAGCCACAAAGGCT 64 TTAACAAAGATAGCCACAAAGGCA * * * 82283110 TCCTTATAATAGAGATAGCCACAAA 1 TCCTTTTAACAAAGATAGCCACAAA 82283135 TGCTCACTTA Statistics Matches: 163, Mismatches: 21, Indels: 20 0.80 0.10 0.10 Matches are distributed among these distances: 81 20 0.12 82 2 0.01 83 4 0.02 84 56 0.34 85 5 0.03 86 27 0.17 87 48 0.29 88 1 0.01 ACGTcount: A:0.37, C:0.22, G:0.17, T:0.25 Consensus pattern (87 bp): TCCTTTTAACAAAGATAGCCACAAAGGCTTCTTTATACTAGAGATAGCCACAAAGGCTTCCTTTT AACAAAGATAGCCACAAAGGCA Found at i:82282950 original size:58 final size:56 Alignment explanation
Indices: 82282888--82283134 Score: 241 Period size: 55 Copynumber: 4.4 Consensus size: 56 82282878 AAGGCATTCA * * * 82282888 TTTAACTGATATAGCCACAAAGGTATGTTTTTAACAGAGATAGCCACAAAGGCATCCT 1 TTTAACAGAGATAGCCACAAAGGT-TGTTTTT-ACAGAGATAGCCACAAAGGCTTCCT * * * * 82282946 TTTAACAGAGATAGCCACAAAGGCTTCTTTATAGTAGAGATCGCCACAAAGGCTTCCT 1 TTTAACAGAGATAGCCACAAAGG-TTGTTTTTA-CAGAGATAGCCACAAAGGCTTCCT * * ** * 82283004 TTTAACAAAGATAGCCACAAAGGCAT-CCTTT-CAGAGATAGCCATAAAGGCTTCCT 1 TTTAACAGAGATAGCCACAAAGG-TTGTTTTTACAGAGATAGCCACAAAGGCTTCCT * * * * * 82283059 TATAACAAAGATAACCACAAAGG-TGTCCTTT-CAGAGAGAGCCACAAAGGCTTCCT 1 TTTAACAGAGATAGCCACAAAGGTTGT-TTTTACAGAGATAGCCACAAAGGCTTCCT * * 82283114 TATAATAGAGATAGCCACAAA 1 TTTAACAGAGATAGCCACAAA 82283135 TGCTCACTTA Statistics Matches: 162, Mismatches: 23, Indels: 11 0.83 0.12 0.06 Matches are distributed among these distances: 53 1 0.01 55 86 0.53 57 3 0.02 58 71 0.44 59 1 0.01 ACGTcount: A:0.37, C:0.21, G:0.17, T:0.24 Consensus pattern (56 bp): TTTAACAGAGATAGCCACAAAGGTTGTTTTTACAGAGATAGCCACAAAGGCTTCCT Found at i:82283065 original size:55 final size:55 Alignment explanation
Indices: 82282922--82283134 Score: 264 Period size: 55 Copynumber: 3.8 Consensus size: 55 82282912 ATGTTTTTAA * * * * * 82282922 CAGAGATAGCCACAAAGGCATCCTTTTAACAGAGATAGCCACAAAGGCTTCTTTAT 1 CAGAGATAGCCACAAAGGCTTCCTTATAACAAAGATAGCCACAAAGGCATCCTT-T * * * 82282978 AGTAGAGATCGCCACAAAGGCTTCCTTTTAACAAAGATAGCCACAAAGGCATCCTTT 1 --CAGAGATAGCCACAAAGGCTTCCTTATAACAAAGATAGCCACAAAGGCATCCTTT * * ** 82283035 CAGAGATAGCCATAAAGGCTTCCTTATAACAAAGATAACCACAAAGGTGTCCTTT 1 CAGAGATAGCCACAAAGGCTTCCTTATAACAAAGATAGCCACAAAGGCATCCTTT * * * 82283090 CAGAGAGAGCCACAAAGGCTTCCTTATAATAGAGATAGCCACAAA 1 CAGAGATAGCCACAAAGGCTTCCTTATAACAAAGATAGCCACAAA 82283135 TGCTCACTTA Statistics Matches: 137, Mismatches: 18, Indels: 3 0.87 0.11 0.02 Matches are distributed among these distances: 55 88 0.64 57 1 0.01 58 48 0.35 ACGTcount: A:0.38, C:0.23, G:0.18, T:0.22 Consensus pattern (55 bp): CAGAGATAGCCACAAAGGCTTCCTTATAACAAAGATAGCCACAAAGGCATCCTTT Found at i:82283146 original size:29 final size:29 Alignment explanation
Indices: 82282843--82283134 Score: 253 Period size: 29 Copynumber: 10.3 Consensus size: 29 82282833 TCAGAGTTTT * * * * * 82282843 GCCACGAAGGCGTTCCTTTTAACAAAGTTT 1 GCCACAAAGGC-TTCCTTATAACAGAGATA * * * 82282873 GCCAC-AAGGCATTCATT-TAACTGATATA 1 GCCACAAAGGC-TTCCTTATAACAGAGATA ** * 82282901 GCCACAAAGG-TATGTTTTTAACAGAGATA 1 GCCACAAAGGCT-TCCTTATAACAGAGATA * * 82282930 GCCACAAAGGCATCCTTTTAACAGAGATA 1 GCCACAAAGGCTTCCTTATAACAGAGATA * ** * 82282959 GCCACAAAGGCTTCTTTATAGTAGAGATC 1 GCCACAAAGGCTTCCTTATAACAGAGATA * * 82282988 GCCACAAAGGCTTCCTTTTAACAAAGATA 1 GCCACAAAGGCTTCCTTATAACAGAGATA * 82283017 GCCACAAAGGCATCCTT-T--CAGAGATA 1 GCCACAAAGGCTTCCTTATAACAGAGATA * * 82283043 GCCATAAAGGCTTCCTTATAACAAAGATA 1 GCCACAAAGGCTTCCTTATAACAGAGATA * * 82283072 ACCACAAAGG-TGTCCTT-T--CAGAGAGA 1 GCCACAAAGGCT-TCCTTATAACAGAGATA * 82283098 GCCACAAAGGCTTCCTTATAATAGAGATA 1 GCCACAAAGGCTTCCTTATAACAGAGATA 82283127 GCCACAAA 1 GCCACAAA 82283135 TGCTCACTTA Statistics Matches: 212, Mismatches: 38, Indels: 25 0.77 0.14 0.09 Matches are distributed among these distances: 26 42 0.20 27 4 0.02 28 17 0.08 29 144 0.68 30 5 0.02 ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24 Consensus pattern (29 bp): GCCACAAAGGCTTCCTTATAACAGAGATA Found at i:82283146 original size:84 final size:85 Alignment explanation
Indices: 82282916--82283134 Score: 259 Period size: 84 Copynumber: 2.6 Consensus size: 85 82282906 AAAGGTATGT * ** 82282916 TTTTAACAGAGATAGCCACAAAGGCATCCTTTTAACAGAGATAGCCACAAAGGCTTCTTTATAGT 1 TTTT-ACAGAGATAGCCACAAAGGCATCC-TTTAACAGAGATAGCCACAAAGGCTTCCTTATAAC * ** 82282981 AGAGATCGCCACAAAGGCTTCC 64 AAAGATAACCACAAAGGCTTCC * * 82283003 TTTTAACAAAGATAGCCACAAAGGCATCCTTT--CAGAGATAGCCATAAAGGCTTCCTTATAACA 1 TTTT-ACAGAGATAGCCACAAAGGCATCCTTTAACAGAGATAGCCACAAAGGCTTCCTTATAACA 82283066 AAGATAACCACAAAGG-TGTCC 65 AAGATAACCACAAAGGCT-TCC * * * 82283087 -TTT-CAGAGAGAGCCACAAAGGCTTCCTTATAATAGAGATAGCCACAAA 1 TTTTACAGAGATAGCCACAAAGGCATCCTT-TAACAGAGATAGCCACAAA 82283135 TGCTCACTTA Statistics Matches: 115, Mismatches: 13, Indels: 11 0.83 0.09 0.08 Matches are distributed among these distances: 81 22 0.19 82 1 0.01 83 4 0.03 84 57 0.50 86 3 0.03 87 28 0.24 ACGTcount: A:0.37, C:0.22, G:0.17, T:0.23 Consensus pattern (85 bp): TTTTACAGAGATAGCCACAAAGGCATCCTTTAACAGAGATAGCCACAAAGGCTTCCTTATAACAA AGATAACCACAAAGGCTTCC Found at i:82284494 original size:28 final size:27 Alignment explanation
Indices: 82284461--82284516 Score: 76 Period size: 27 Copynumber: 2.0 Consensus size: 27 82284451 TTAGAATACT * 82284461 TTAGTTTACTAAAATTACCGAAATACCC 1 TTAGTTT-CTAAAAATACCGAAATACCC * * 82284489 TTAGTTTGTAAAAATACTGAAATACCC 1 TTAGTTTCTAAAAATACCGAAATACCC 82284516 T 1 T 82284517 CGATTTGTAA Statistics Matches: 25, Mismatches: 3, Indels: 1 0.86 0.10 0.03 Matches are distributed among these distances: 27 18 0.72 28 7 0.28 ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34 Consensus pattern (27 bp): TTAGTTTCTAAAAATACCGAAATACCC Found at i:82284500 original size:27 final size:28 Alignment explanation
Indices: 82284470--82284824 Score: 114 Period size: 27 Copynumber: 13.1 Consensus size: 28 82284460 TTTAGTTTAC * 82284470 TAAAATTACCGAAATACCCTTAG-TTTG 1 TAAAATTACTGAAATACCCTTAGATTTG * * 82284497 TAAAAATACTGAAATACCC-TCGATTTG 1 TAAAATTACTGAAATACCCTTAGATTTG * * * 82284524 TAAATTTACTGAAATA-CCTTCGACTTG 1 TAAAATTACTGAAATACCCTTAGATTTG ** * 82284551 TAAAATTACT-AAAGTACCC-CCGATTTA 1 TAAAATTACTGAAA-TACCCTTAGATTTG * * *** * * 82284578 CAGAATTA-TCGTTTTACCCCTA-ATTTA 1 TAAAATTACT-GAAATACCCTTAGATTTG * * *** * 82284605 CATAATTACTGTTTTACCCTT-GATTTA 1 TAAAATTACTGAAATACCCTTAGATTTG * * ** * * 82284632 CAGAATTACT-ATTTTACCC-TCGATTTA 1 TAAAATTACTGA-AATACCCTTAGATTTG * * * 82284659 CAAAATTACTAAAATACCCTT-GGTTTG 1 TAAAATTACTGAAATACCCTTAGATTTG * * * * 82284686 TGAAATTACCGAAAAACCCTCA-ATTTG 1 TAAAATTACTGAAATACCCTTAGATTTG ** * * 82284713 TAAAATTACCAAAATACCCCTA-ATTTA 1 TAAAATTACTGAAATACCCTTAGATTTG * * * * 82284740 CAAAGTTACAGAAATACCCTT-GACTTTC 1 TAAAATTACTGAAATACCCTTAGA-TTTG * * * 82284768 TAAAAATTA-TAGAAATACCATT-GGTTTA 1 T-AAAATTACT-GAAATACCCTTAGATTTG * 82284796 CAAAATTACTGAAATACCCTTAG-TTTG 1 TAAAATTACTGAAATACCCTTAGATTTG 82284823 TA 1 TA 82284825 GATTTACCAA Statistics Matches: 253, Mismatches: 55, Indels: 40 0.73 0.16 0.11 Matches are distributed among these distances: 26 9 0.04 27 214 0.85 28 13 0.05 29 17 0.07 ACGTcount: A:0.37, C:0.19, G:0.09, T:0.34 Consensus pattern (28 bp): TAAAATTACTGAAATACCCTTAGATTTG Found at i:82284539 original size:54 final size:54 Alignment explanation
Indices: 82284470--82284576 Score: 128 Period size: 54 Copynumber: 2.0 Consensus size: 54 82284460 TTTAGTTTAC * * 82284470 TAAAATTACCGAAATACCCTTAG-TTTGTAAAAATACTGAAA-TACCCTCGATTTG 1 TAAAATTACCGAAATA-CCTTAGACTTGTAAAAATACT-AAAGTACCCCCGATTTG * * * * 82284524 TAAATTTACTGAAATACCTTCGACTTGTAAAATTACTAAAGTACCCCCGATTT 1 TAAAATTACCGAAATACCTTAGACTTGTAAAAATACTAAAGTACCCCCGATTT 82284577 ACAGAATTAT Statistics Matches: 45, Mismatches: 6, Indels: 4 0.82 0.11 0.07 Matches are distributed among these distances: 53 8 0.18 54 37 0.82 ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33 Consensus pattern (54 bp): TAAAATTACCGAAATACCTTAGACTTGTAAAAATACTAAAGTACCCCCGATTTG Found at i:82284678 original size:54 final size:54 Alignment explanation
Indices: 82284552--82284680 Score: 136 Period size: 54 Copynumber: 2.4 Consensus size: 54 82284542 TTCGACTTGT * ** * 82284552 AAAATTACTAAAGTACCCCCGATTTACAGAATTATCGTTTTACCCCTAATTTAC 1 AAAATTACTAAAATACCCTTGATTTACAGAATTATCATTTTACCCCTAATTTAC * **** * 82284606 ATAATTACTGTTTTACCCTTGATTTACAGAATTA-CTATTTTA-CCCTCGATTTAC 1 AAAATTACTAAAATACCCTTGATTTACAGAATTATC-ATTTTACCCCT-AATTTAC 82284660 AAAATTACTAAAATACCCTTG 1 AAAATTACTAAAATACCCTTG 82284681 GTTTGTGAAA Statistics Matches: 59, Mismatches: 14, Indels: 4 0.77 0.18 0.05 Matches are distributed among these distances: 53 5 0.08 54 54 0.92 ACGTcount: A:0.34, C:0.22, G:0.07, T:0.37 Consensus pattern (54 bp): AAAATTACTAAAATACCCTTGATTTACAGAATTATCATTTTACCCCTAATTTAC Found at i:82284933 original size:27 final size:27 Alignment explanation
Indices: 82284876--82284939 Score: 76 Period size: 27 Copynumber: 2.4 Consensus size: 27 82284866 TCCCTATTAG * * 82284876 GTAAAAAGACCGTAAAGCCCCTGTAGG 1 GTAAAATGACCGTAAAGCCCCTGTAGA * * 82284903 GTAAAGTGACCGTAATA-CCCCTGTATA 1 GTAAAATGACCGTAA-AGCCCCTGTAGA 82284930 GTAAAATGAC 1 GTAAAATGAC 82284940 GAATATGCCC Statistics Matches: 31, Mismatches: 5, Indels: 2 0.82 0.13 0.05 Matches are distributed among these distances: 27 30 0.97 28 1 0.03 ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20 Consensus pattern (27 bp): GTAAAATGACCGTAAAGCCCCTGTAGA Found at i:82286204 original size:20 final size:20 Alignment explanation
Indices: 82286179--82286237 Score: 100 Period size: 20 Copynumber: 3.0 Consensus size: 20 82286169 TAAATATGGT 82286179 ATGTATGATATGCACATGAA 1 ATGTATGATATGCACATGAA * * 82286199 ATGTATGCTATGCACATGAT 1 ATGTATGATATGCACATGAA 82286219 ATGTATGATATGCACATGA 1 ATGTATGATATGCACATGA 82286238 GGTAATCATA Statistics Matches: 36, Mismatches: 3, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 20 36 1.00 ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32 Consensus pattern (20 bp): ATGTATGATATGCACATGAA Found at i:82286315 original size:24 final size:24 Alignment explanation
Indices: 82286288--82286454 Score: 248 Period size: 24 Copynumber: 7.0 Consensus size: 24 82286278 GAGGAAGTGA 82286288 AAAAGGGCTTATGCCCCAGTTATC 1 AAAAGGGCTTATGCCCCAGTTATC * 82286312 AAAAGGGCTTATGCCTCAGTTATC 1 AAAAGGGCTTATGCCCCAGTTATC 82286336 AAAAGGGCTTATGCCCCAGTTATC 1 AAAAGGGCTTATGCCCCAGTTATC 82286360 AAAAGGGCTTATGCCCCAGTTAT- 1 AAAAGGGCTTATGCCCCAGTTATC * 82286383 AAAAGGGCTTATGCCCCAGTTATT 1 AAAAGGGCTTATGCCCCAGTTATC * * * 82286407 GAAAGGGCTTTTGCCCCAGTTATT 1 AAAAGGGCTTATGCCCCAGTTATC * 82286431 AAAAGAGGC-TAGGCCTCCAGTTAT 1 AAAAG-GGCTTATGCC-CCAGTTAT 82286455 ATGATAAAGC Statistics Matches: 133, Mismatches: 7, Indels: 5 0.92 0.05 0.03 Matches are distributed among these distances: 23 23 0.17 24 99 0.74 25 11 0.08 ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27 Consensus pattern (24 bp): AAAAGGGCTTATGCCCCAGTTATC Found at i:82286412 original size:71 final size:71 Alignment explanation
Indices: 82286288--82286455 Score: 248 Period size: 71 Copynumber: 2.3 Consensus size: 71 82286278 GAGGAAGTGA * 82286288 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCTCAGTTATCAAAAGGGCTTATGCCCC 1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC 82286353 AGTTATC 65 AGTTATC ** * 82286360 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCA 1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA * 82286425 GTTATT 66 GTTATC * 82286431 AAAAGAGGC-TAGGCCTCCAGTTATA 1 AAAAG-GGCTTATGCC-CCAGTTATA 82286456 TGATAAAGCA Statistics Matches: 88, Mismatches: 6, Indels: 4 0.90 0.06 0.04 Matches are distributed among these distances: 71 53 0.60 72 35 0.40 ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27 Consensus pattern (71 bp): AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA GTTATC Found at i:82286681 original size:31 final size:31 Alignment explanation
Indices: 82286646--82286740 Score: 172 Period size: 31 Copynumber: 3.1 Consensus size: 31 82286636 CATTTACAGT 82286646 AAAGGCTTCGGCCCAGTAATATGAAATATGA 1 AAAGGCTTCGGCCCAGTAATATGAAATATGA * 82286677 AAAGGCTTCGGCCTAGTAATATGAAATATGA 1 AAAGGCTTCGGCCCAGTAATATGAAATATGA * 82286708 AAAGGCTTCGGCCCAGTATTATGAAATATGA 1 AAAGGCTTCGGCCCAGTAATATGAAATATGA 82286739 AA 1 AA 82286741 TATGAAAAGG Statistics Matches: 61, Mismatches: 3, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 31 61 1.00 ACGTcount: A:0.39, C:0.15, G:0.22, T:0.24 Consensus pattern (31 bp): AAAGGCTTCGGCCCAGTAATATGAAATATGA Found at i:82292839 original size:65 final size:65 Alignment explanation
Indices: 82292759--82292888 Score: 260 Period size: 65 Copynumber: 2.0 Consensus size: 65 82292749 TCCTTATATC 82292759 CATCATATTAATGCCATTTTCATAATTAAAATCATATTCCATTATATATCATTACACTTCATACT 1 CATCATATTAATGCCATTTTCATAATTAAAATCATATTCCATTATATATCATTACACTTCATACT 82292824 CATCATATTAATGCCATTTTCATAATTAAAATCATATTCCATTATATATCATTACACTTCATACT 1 CATCATATTAATGCCATTTTCATAATTAAAATCATATTCCATTATATATCATTACACTTCATACT 82292889 TTGAATATAT Statistics Matches: 65, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 65 65 1.00 ACGTcount: A:0.37, C:0.20, G:0.02, T:0.42 Consensus pattern (65 bp): CATCATATTAATGCCATTTTCATAATTAAAATCATATTCCATTATATATCATTACACTTCATACT Found at i:82294505 original size:26 final size:26 Alignment explanation
Indices: 82294476--82294535 Score: 66 Period size: 28 Copynumber: 2.2 Consensus size: 26 82294466 TCCCTTTGAA * * * 82294476 TCATTCGATATTTCGCACACTAAGTG 1 TCATTCAATATCTCACACACTAAGTG 82294502 TCATTCTCAATATCTCACACACTAAGTG 1 TCA-T-TCAATATCTCACACACTAAGTG * 82294530 CCATTC 1 TCATTC 82294536 TCAATATTTC Statistics Matches: 28, Mismatches: 4, Indels: 4 0.78 0.11 0.11 Matches are distributed among these distances: 26 5 0.18 27 2 0.07 28 21 0.75 ACGTcount: A:0.28, C:0.28, G:0.10, T:0.33 Consensus pattern (26 bp): TCATTCAATATCTCACACACTAAGTG Found at i:82294551 original size:28 final size:28 Alignment explanation
Indices: 82294483--82294561 Score: 113 Period size: 28 Copynumber: 2.8 Consensus size: 28 82294473 GAATCATTCG * 82294483 ATATTTCGCACACTAAGTGTCATTCTCA 1 ATATTTCGCACACTAAGTGCCATTCTCA * * 82294511 ATATCTCACACACTAAGTGCCATTCTCA 1 ATATTTCGCACACTAAGTGCCATTCTCA * * 82294539 ATATTTCGTACACTGAGTGCCAT 1 ATATTTCGCACACTAAGTGCCAT 82294562 ATTTGATTGC Statistics Matches: 44, Mismatches: 7, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 28 44 1.00 ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33 Consensus pattern (28 bp): ATATTTCGCACACTAAGTGCCATTCTCA Found at i:82298717 original size:11 final size:10 Alignment explanation
Indices: 82298685--82298740 Score: 62 Period size: 11 Copynumber: 5.6 Consensus size: 10 82298675 CATGAGATTT 82298685 TGATAT-ACA 1 TGATATGACA * 82298694 TGATTTGACA 1 TGATATGACA 82298704 TGATATGCACA 1 TGATATG-ACA * 82298715 TGATATG-TA 1 TGATATGACA 82298724 TGATATGCACA 1 TGATATG-ACA 82298735 TGATAT 1 TGATAT 82298741 ATTCATATAT Statistics Matches: 39, Mismatches: 4, Indels: 6 0.80 0.08 0.12 Matches are distributed among these distances: 9 13 0.33 10 9 0.23 11 17 0.44 ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36 Consensus pattern (10 bp): TGATATGACA Found at i:82298728 original size:20 final size:20 Alignment explanation
Indices: 82298703--82298740 Score: 76 Period size: 20 Copynumber: 1.9 Consensus size: 20 82298693 ATGATTTGAC 82298703 ATGATATGCACATGATATGT 1 ATGATATGCACATGATATGT 82298723 ATGATATGCACATGATAT 1 ATGATATGCACATGATAT 82298741 ATTCATATAT Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 20 18 1.00 ACGTcount: A:0.37, C:0.11, G:0.18, T:0.34 Consensus pattern (20 bp): ATGATATGCACATGATATGT Found at i:82298819 original size:25 final size:25 Alignment explanation
Indices: 82298786--82298855 Score: 122 Period size: 25 Copynumber: 2.8 Consensus size: 25 82298776 GAGGAAGTGA * 82298786 AAAAGGGCTTTTCCCCAGTTTACCG 1 AAAAGGGCTTTGCCCCAGTTTACCG 82298811 AAAAGGGCTTTGCCCCAGTTTACCG 1 AAAAGGGCTTTGCCCCAGTTTACCG * 82298836 AAAAGGGCTTTGCCCTAGTT 1 AAAAGGGCTTTGCCCCAGTT 82298856 ATTAAAAGAG Statistics Matches: 43, Mismatches: 2, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 25 43 1.00 ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27 Consensus pattern (25 bp): AAAAGGGCTTTGCCCCAGTTTACCG Found at i:82299153 original size:31 final size:30 Alignment explanation
Indices: 82299074--82299174 Score: 184 Period size: 30 Copynumber: 3.3 Consensus size: 30 82299064 AGCTTACAGT * 82299074 AAAGGCTTCGGCCAGGGATATGATTTATGA 1 AAAGGCTTCGGCCAGTGATATGATTTATGA 82299104 AAAGGCTTCGGCCAGTGATATGATTTATGA 1 AAAGGCTTCGGCCAGTGATATGATTTATGA 82299134 AAAGGCTTCGGCCCAGTGATATGATTTATGA 1 AAAGGCTTCGG-CCAGTGATATGATTTATGA 82299165 AAAGGCTTCG 1 AAAGGCTTCG 82299175 ACCCAGTATA Statistics Matches: 69, Mismatches: 1, Indels: 1 0.97 0.01 0.01 Matches are distributed among these distances: 30 40 0.58 31 29 0.42 ACGTcount: A:0.30, C:0.15, G:0.28, T:0.28 Consensus pattern (30 bp): AAAGGCTTCGGCCAGTGATATGATTTATGA Found at i:82299180 original size:31 final size:30 Alignment explanation
Indices: 82299074--82299186 Score: 174 Period size: 30 Copynumber: 3.7 Consensus size: 30 82299064 AGCTTACAGT * * 82299074 AAAGGCTTCGGCCAGGGATATGATTTATGA 1 AAAGGCTTCGCCCAGTGATATGATTTATGA * 82299104 AAAGGCTTCGGCCAGTGATATGATTTATGA 1 AAAGGCTTCGCCCAGTGATATGATTTATGA 82299134 AAAGGCTTCGGCCCAGTGATATGATTTATGA 1 AAAGGCTTC-GCCCAGTGATATGATTTATGA 82299165 AAAGGCTTCGACCCAGT-ATATG 1 AAAGGCTTCG-CCCAGTGATATG 82299187 TCGAGACTGA Statistics Matches: 79, Mismatches: 2, Indels: 4 0.93 0.02 0.05 Matches are distributed among these distances: 30 44 0.56 31 35 0.44 ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27 Consensus pattern (30 bp): AAAGGCTTCGCCCAGTGATATGATTTATGA Found at i:82307260 original size:27 final size:27 Alignment explanation
Indices: 82307222--82307281 Score: 120 Period size: 27 Copynumber: 2.2 Consensus size: 27 82307212 ATCTGAAGCA 82307222 ACTTTCAAGCAATCACGAATTACTTTT 1 ACTTTCAAGCAATCACGAATTACTTTT 82307249 ACTTTCAAGCAATCACGAATTACTTTT 1 ACTTTCAAGCAATCACGAATTACTTTT 82307276 ACTTTC 1 ACTTTC 82307282 TCTTCGATTT Statistics Matches: 33, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 27 33 1.00 ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38 Consensus pattern (27 bp): ACTTTCAAGCAATCACGAATTACTTTT Found at i:82309508 original size:46 final size:45 Alignment explanation
Indices: 82309441--82309615 Score: 147 Period size: 46 Copynumber: 3.8 Consensus size: 45 82309431 TGTAACCCGC 82309441 CCATAAGTGAACTC-AGACTCAACTCAACGAGCTCGGGCGTTCGCAT 1 CCATAAGTGAACTCGA-ACTCAACTCAACGAGCTCGGGC-TTCGCAT * * * * 82309487 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGAATGCCTAG-TT 1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCG--GGCTTCGCAT * *** * * * ** 82309533 ACATCTCTCGAACCCGGACTCAACTCAACGAGTTCGAACATTCGCAT 1 CCATAAGT-GAACTCGAACTCAACTCAACGAGCTCGGGC-TTCGCAT * * 82309580 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG 1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGG 82309616 ATGCCCAAAT Statistics Matches: 101, Mismatches: 22, Indels: 12 0.75 0.16 0.09 Matches are distributed among these distances: 45 1 0.01 46 66 0.65 47 32 0.32 48 2 0.02 ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21 Consensus pattern (45 bp): CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCTTCGCAT Found at i:82315409 original size:68 final size:68 Alignment explanation
Indices: 82315242--82315417 Score: 184 Period size: 68 Copynumber: 2.6 Consensus size: 68 82315232 CTCTACCACC * * * * 82315242 CATGTGACCTAGC--CA-ATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT 1 CATGTGACCTAGCTACACATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAAT 82315304 CACA 65 CACA ** * * 82315308 CATGTGACCTAGCTACATTTATCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGT 1 CATGTGACCTAGCTACACATATATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGA 82315370 ATCACA 63 ATCACA 82315376 CATGTGACCTAGCTACTACATAGTATCTCGTAGCTCTCTTGT 1 CATGTGACCTAGCTAC-ACATA-TATCTCGTAGCTCTCTTGT 82315418 ACACATGATG Statistics Matches: 92, Mismatches: 10, Indels: 14 0.79 0.09 0.12 Matches are distributed among these distances: 66 13 0.14 68 39 0.42 69 8 0.09 70 6 0.07 71 26 0.28 ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34 Consensus pattern (68 bp): CATGTGACCTAGCTACACATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATC ACA Found at i:82328315 original size:2 final size:2 Alignment explanation
Indices: 82328310--82328342 Score: 66 Period size: 2 Copynumber: 16.5 Consensus size: 2 82328300 ATATAATCGA 82328310 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A 82328343 CTTATATGCA Statistics Matches: 31, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 31 1.00 ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48 Consensus pattern (2 bp): AT Found at i:82328524 original size:16 final size:16 Alignment explanation
Indices: 82328503--82328533 Score: 53 Period size: 16 Copynumber: 1.9 Consensus size: 16 82328493 ATTTGTTTTC * 82328503 ATTTGCATCATATATA 1 ATTTGCATCAAATATA 82328519 ATTTGCATCAAATAT 1 ATTTGCATCAAATAT 82328534 CAAATAACCA Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 16 14 1.00 ACGTcount: A:0.39, C:0.13, G:0.06, T:0.42 Consensus pattern (16 bp): ATTTGCATCAAATATA Found at i:82328812 original size:56 final size:56 Alignment explanation
Indices: 82328750--82328940 Score: 319 Period size: 56 Copynumber: 3.4 Consensus size: 56 82328740 CCCAGACAGC * * * * * 82328750 GTCTTACTTGCACACACATATCGGAGTCACATATCGATGCCAATGTATTAAATGTG 1 GTCTTACTCGCACACATATATCGGAGTCACATATCGCTGCCAACGTATTAAACGTG * 82328806 GTCTTACTCGCACACATATATCAGAGTCACATATCGCTGCCAACGTATTAAACGTG 1 GTCTTACTCGCACACATATATCGGAGTCACATATCGCTGCCAACGTATTAAACGTG * 82328862 GTCTTACTCGCACACATATATCGAAGTCACATATCGCTGCCAACGTATTAAACGTG 1 GTCTTACTCGCACACATATATCGGAGTCACATATCGCTGCCAACGTATTAAACGTG 82328918 GTCTTACTCGCACACATATATCG 1 GTCTTACTCGCACACATATATCG 82328941 ATGCCATGGT Statistics Matches: 127, Mismatches: 8, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 56 127 1.00 ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28 Consensus pattern (56 bp): GTCTTACTCGCACACATATATCGGAGTCACATATCGCTGCCAACGTATTAAACGTG Found at i:82331330 original size:3 final size:3 Alignment explanation
Indices: 82331322--82331359 Score: 76 Period size: 3 Copynumber: 12.7 Consensus size: 3 82331312 GCTTTATGTT 82331322 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT 1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT 82331360 TTGAATATAA Statistics Matches: 35, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 35 1.00 ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68 Consensus pattern (3 bp): TTA Found at i:82336630 original size:42 final size:42 Alignment explanation
Indices: 82336572--82336692 Score: 129 Period size: 43 Copynumber: 2.9 Consensus size: 42 82336562 TAGGGTTACT ** * 82336572 GAGATTATGTGTAAGACCATATCTGGGATATGGCATCGATAT 1 GAGATTACATGTAAGACCATATCTGGGATATGGCATCGATAC * * * 82336614 GAGACTT-CATGTAAGACCATAGCT-GGACTATTAGCATCGTTAC 1 GAGA-TTACATGTAAGACCATATCTGGGA-TA-TGGCATCGATAC * * 82336657 GAGATTACATGTAAAACCATATCTGAGATATGGCAT 1 GAGATTACATGTAAGACCATATCTGGGATATGGCAT 82336693 TGTTACGGTA Statistics Matches: 64, Mismatches: 10, Indels: 10 0.76 0.12 0.12 Matches are distributed among these distances: 41 3 0.05 42 27 0.42 43 32 0.50 44 2 0.03 ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29 Consensus pattern (42 bp): GAGATTACATGTAAGACCATATCTGGGATATGGCATCGATAC Found at i:82345156 original size:27 final size:27 Alignment explanation
Indices: 82345098--82345158 Score: 95 Period size: 27 Copynumber: 2.3 Consensus size: 27 82345088 GCTTTTAGAG * 82345098 CCAATGGAAGAACCACAACCTGTGCCG 1 CCAATGGAAGAACCACAACCTGTGCCA * * 82345125 GCAATGGAAGATCCACAACCTGTGCCA 1 CCAATGGAAGAACCACAACCTGTGCCA 82345152 CCAATGG 1 CCAATGG 82345159 TGCAAAAAAA Statistics Matches: 30, Mismatches: 4, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 27 30 1.00 ACGTcount: A:0.33, C:0.31, G:0.23, T:0.13 Consensus pattern (27 bp): CCAATGGAAGAACCACAACCTGTGCCA Found at i:82345375 original size:32 final size:32 Alignment explanation
Indices: 82345334--82345399 Score: 132 Period size: 32 Copynumber: 2.1 Consensus size: 32 82345324 TTTTGGAAAG 82345334 CTCCATCCTACACTTGACCCGCACAAGATGTA 1 CTCCATCCTACACTTGACCCGCACAAGATGTA 82345366 CTCCATCCTACACTTGACCCGCACAAGATGTA 1 CTCCATCCTACACTTGACCCGCACAAGATGTA 82345398 CT 1 CT 82345400 ATCCATTACC Statistics Matches: 34, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 32 34 1.00 ACGTcount: A:0.27, C:0.38, G:0.12, T:0.23 Consensus pattern (32 bp): CTCCATCCTACACTTGACCCGCACAAGATGTA Found at i:82346477 original size:18 final size:18 Alignment explanation
Indices: 82346456--82346515 Score: 50 Period size: 17 Copynumber: 3.3 Consensus size: 18 82346446 CAAAAGCATT 82346456 GTGAGGGTTAAAAGCAAA 1 GTGAGGGTTAAAAGCAAA * * 82346474 GTGAGAGTTGCAAAAGCATA 1 GTGAGGGTT--AAAAGCAAA * * * 82346494 G-AACGGATAAAAGCAAA 1 GTGAGGGTTAAAAGCAAA 82346511 GTGAG 1 GTGAG 82346516 TAAAATAAGA Statistics Matches: 30, Mismatches: 9, Indels: 6 0.67 0.20 0.13 Matches are distributed among these distances: 17 9 0.30 18 9 0.30 19 3 0.10 20 9 0.30 ACGTcount: A:0.45, C:0.08, G:0.32, T:0.15 Consensus pattern (18 bp): GTGAGGGTTAAAAGCAAA Found at i:82349519 original size:21 final size:21 Alignment explanation
Indices: 82349495--82349549 Score: 58 Period size: 21 Copynumber: 2.6 Consensus size: 21 82349485 CTTATAAATT 82349495 TTTATTATATATACATTTTAC 1 TTTATTATATATACATTTTAC ** 82349516 TTTA-TATATTATTTATTTTAC 1 TTTATTATA-TATACATTTTAC * 82349537 TATATTTATATAT 1 TTTA-TTATATAT 82349550 GTAAATTATT Statistics Matches: 28, Mismatches: 3, Indels: 5 0.78 0.08 0.14 Matches are distributed among these distances: 20 4 0.14 21 17 0.61 22 3 0.11 23 4 0.14 ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62 Consensus pattern (21 bp): TTTATTATATATACATTTTAC Found at i:82349584 original size:41 final size:40 Alignment explanation
Indices: 82349444--82349584 Score: 119 Period size: 41 Copynumber: 3.4 Consensus size: 40 82349434 AAAAATAATG * 82349444 TATATTATTTTTATTTATATATTATATTATTATATACGTTTCT 1 TATATTATTTTTATTTATATATTATATTATTATATA---TTAT * * * 82349487 TATA-AATTTTTA-TTATATATACATTTTACTTTATATATTAT 1 TATATTATTTTTATTTATATAT-TATATTA--TTATATATTAT * * 82349528 T-TATT-TTACTATATTTATATATGTAAATTATTATATATTAT 1 TATATTATT--TTTATTTATATAT-TATATTATTATATATTAT 82349569 TATATTATTTTTATTT 1 TATATTATTTTTATTT 82349585 TTAACTATTT Statistics Matches: 78, Mismatches: 11, Indels: 20 0.72 0.10 0.18 Matches are distributed among these distances: 40 4 0.05 41 30 0.38 42 19 0.24 43 18 0.23 44 7 0.09 ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62 Consensus pattern (40 bp): TATATTATTTTTATTTATATATTATATTATTATATATTAT Found at i:82360467 original size:28 final size:28 Alignment explanation
Indices: 82360393--82360468 Score: 68 Period size: 28 Copynumber: 2.7 Consensus size: 28 82360383 TGTATATTAT 82360393 TTTTA-TTTATATATTATATTATTATATAC 1 TTTTACTTTATATA-T-TATTATTATATAC * * * 82360422 GTTT-CTTATAAATTTTATTA-TATATAC 1 TTTTACTT-TATATATTATTATTATATAC 82360449 ATTTTACTTTATATATTATT 1 -TTTTACTTTATATATTATT 82360469 TGTTTTACTA Statistics Matches: 37, Mismatches: 6, Indels: 9 0.71 0.12 0.17 Matches are distributed among these distances: 27 7 0.19 28 17 0.46 29 9 0.24 30 4 0.11 ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61 Consensus pattern (28 bp): TTTTACTTTATATATTATTATTATATAC Found at i:82364700 original size:28 final size:28 Alignment explanation
Indices: 82364631--82364731 Score: 114 Period size: 28 Copynumber: 3.5 Consensus size: 28 82364621 GACAAGATTG * * * * 82364631 GCACTAAGTGTGCGGGTTTAAAATTGTACA 1 GCACTAAGTGTGCGAGTTT--GATTATATA 82364661 GCACTAAGTGTGCGAGTTTGATTATATA 1 GCACTAAGTGTGCGAGTTTGATTATATA * 82364689 GCACTAAGTGTGCGAG-CTGAATGTATATA 1 GCACTAAGTGTGCGAGTTTG-AT-TATATA 82364718 GCACTAAGTGTGCG 1 GCACTAAGTGTGCG 82364732 GATTCACTAT Statistics Matches: 64, Mismatches: 5, Indels: 5 0.86 0.07 0.07 Matches are distributed among these distances: 27 2 0.03 28 24 0.38 29 20 0.31 30 18 0.28 ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30 Consensus pattern (28 bp): GCACTAAGTGTGCGAGTTTGATTATATA Found at i:82364725 original size:29 final size:28 Alignment explanation
Indices: 82364660--82364731 Score: 110 Period size: 29 Copynumber: 2.5 Consensus size: 28 82364650 AAAATTGTAC * 82364660 AGCACTAAGTGTGCGAGTTTGATTATAT 1 AGCACTAAGTGTGCGAGTCTGATTATAT 82364688 AGCACTAAGTGTGCGAG-CTGAATGTATAT 1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT 82364717 AGCACTAAGTGTGCG 1 AGCACTAAGTGTGCG 82364732 GATTCACTAT Statistics Matches: 41, Mismatches: 1, Indels: 3 0.91 0.02 0.07 Matches are distributed among these distances: 27 2 0.05 28 19 0.46 29 20 0.49 ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29 Consensus pattern (28 bp): AGCACTAAGTGTGCGAGTCTGATTATAT Found at i:82372509 original size:28 final size:28 Alignment explanation
Indices: 82372440--82372540 Score: 114 Period size: 28 Copynumber: 3.5 Consensus size: 28 82372430 GACAAGATTG * * * * 82372440 GCACTAAGTGTGCGGGTTTAAAATTGTACA 1 GCACTAAGTGTGCGAGTTT--GATTATATA 82372470 GCACTAAGTGTGCGAGTTTGATTATATA 1 GCACTAAGTGTGCGAGTTTGATTATATA * 82372498 GCACTAAGTGTGCGAG-CTGAATGTATATA 1 GCACTAAGTGTGCGAGTTTG-AT-TATATA 82372527 GCACTAAGTGTGCG 1 GCACTAAGTGTGCG 82372541 GATTCACTAT Statistics Matches: 64, Mismatches: 5, Indels: 5 0.86 0.07 0.07 Matches are distributed among these distances: 27 2 0.03 28 24 0.38 29 20 0.31 30 18 0.28 ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30 Consensus pattern (28 bp): GCACTAAGTGTGCGAGTTTGATTATATA Found at i:82372534 original size:29 final size:28 Alignment explanation
Indices: 82372469--82372540 Score: 110 Period size: 29 Copynumber: 2.5 Consensus size: 28 82372459 AAAATTGTAC * 82372469 AGCACTAAGTGTGCGAGTTTGATTATAT 1 AGCACTAAGTGTGCGAGTCTGATTATAT 82372497 AGCACTAAGTGTGCGAG-CTGAATGTATAT 1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT 82372526 AGCACTAAGTGTGCG 1 AGCACTAAGTGTGCG 82372541 GATTCACTAT Statistics Matches: 41, Mismatches: 1, Indels: 3 0.91 0.02 0.07 Matches are distributed among these distances: 27 2 0.05 28 19 0.46 29 20 0.49 ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29 Consensus pattern (28 bp): AGCACTAAGTGTGCGAGTCTGATTATAT Found at i:82396794 original size:40 final size:39 Alignment explanation
Indices: 82396626--82396796 Score: 159 Period size: 40 Copynumber: 4.3 Consensus size: 39 82396616 AGAAATTGAA * * 82396626 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT- 1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG * * * * * 82396666 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG 1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G * * 82396706 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG 1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG * * 82396746 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG 1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G 82396786 TGATATCCGGG 1 TGATATCCGGG 82396797 TAAAGTCCCG Statistics Matches: 107, Mismatches: 17, Indels: 14 0.78 0.12 0.10 Matches are distributed among these distances: 37 2 0.02 38 4 0.04 39 4 0.04 40 95 0.89 41 2 0.02 ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24 Consensus pattern (39 bp): TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG Found at i:82404824 original size:40 final size:39 Alignment explanation
Indices: 82404656--82404826 Score: 159 Period size: 40 Copynumber: 4.3 Consensus size: 39 82404646 AGAAATTGAA * * 82404656 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT- 1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG * * * * * 82404696 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG 1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G * * 82404736 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG 1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG * * 82404776 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG 1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G 82404816 TGATATCCGGG 1 TGATATCCGGG 82404827 TAAAGTCCCG Statistics Matches: 107, Mismatches: 17, Indels: 14 0.78 0.12 0.10 Matches are distributed among these distances: 37 2 0.02 38 4 0.04 39 4 0.04 40 95 0.89 41 2 0.02 ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24 Consensus pattern (39 bp): TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG Found at i:82406798 original size:44 final size:42 Alignment explanation
Indices: 82406727--82406871 Score: 130 Period size: 43 Copynumber: 3.4 Consensus size: 42 82406717 CTATTCTACA ** * * * 82406727 TGTAAGACCATGTCTATGACGTTGGCATCGATTTCTGTTTTGCG 1 TGTAAGACCATGTCTGGGAC-ATGGCATCGATATCTGATTT-CG * 82406771 TGTAAGACCATGTTTGGGACATCGGCATC-ATATCTGATTTCG 1 TGTAAGACCATGTCTGGGACAT-GGCATCGATATCTGATTTCG * * * * * * 82406813 TGTAAGACCTTATCTGGGACAGTGGCATCGATGTTTGATTACA 1 TGTAAGACCATGTCTGGGACA-TGGCATCGATATCTGATTTCG * 82406856 TGTAAGACCACGTCTG 1 TGTAAGACCATGTCTG 82406872 AGATTTTGGC Statistics Matches: 82, Mismatches: 16, Indels: 7 0.78 0.15 0.07 Matches are distributed among these distances: 42 26 0.32 43 33 0.40 44 23 0.28 ACGTcount: A:0.23, C:0.19, G:0.25, T:0.34 Consensus pattern (42 bp): TGTAAGACCATGTCTGGGACATGGCATCGATATCTGATTTCG Found at i:82411375 original size:28 final size:27 Alignment explanation
Indices: 82411312--82411381 Score: 113 Period size: 27 Copynumber: 2.6 Consensus size: 27 82411302 ATAGTGAGTC * 82411312 CGCACACTCAGTGCTATATAATCAACT 1 CGCACACTTAGTGCTATATAATCAACT * 82411339 CGCACACTTAGTGCTATATGATCAAACT 1 CGCACACTTAGTGCTATATAATC-AACT 82411367 CGCACACTTAGTGCT 1 CGCACACTTAGTGCT 82411382 GTACAAATTT Statistics Matches: 40, Mismatches: 2, Indels: 1 0.93 0.05 0.02 Matches are distributed among these distances: 27 21 0.52 28 19 0.47 ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27 Consensus pattern (27 bp): CGCACACTTAGTGCTATATAATCAACT Found at i:82415230 original size:79 final size:80 Alignment explanation
Indices: 82415122--82415344 Score: 360 Period size: 79 Copynumber: 2.8 Consensus size: 80 82415112 ACCGCATGAT * * * * * 82415122 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA 1 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA 82415187 CATCACTAGCACGAA 66 CATCACTAGCACGAA * * 82415202 TGCTCCTC-GAACTTAGTCCGGATACATCACTAGCACGAATGCTCCTCAGAACTTAGTCCGGATA 1 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA 82415266 CATCACTAGCACGAA 66 CATCACTAGCACGAA * 82415281 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG-CCGGATA 1 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA 82415345 TAACCACAAG Statistics Matches: 132, Mismatches: 10, Indels: 3 0.91 0.07 0.02 Matches are distributed among these distances: 79 79 0.60 80 53 0.40 ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24 Consensus pattern (80 bp): TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA CATCACTAGCACGAA Found at i:82415357 original size:40 final size:40 Alignment explanation
Indices: 82415122--82415344 Score: 369 Period size: 40 Copynumber: 5.6 Consensus size: 40 82415112 ACCGCATGAT * * * * 82415122 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAA 1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA 82415162 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA 1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA * 82415202 TGCTCCTC-GAACTTAGTCCGGATACATCACTAGCACGAA 1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA * * 82415241 TGCTCCTCAGAACTTAGTCCGGATACATCACTAGCACGAA 1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA 82415281 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA 1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA 82415321 TGCTCTTCGGAACTTAG-CCGGATA 1 TGCTCTTCGGAACTTAGTCCGGATA 82415345 TAACCACAAG Statistics Matches: 175, Mismatches: 7, Indels: 3 0.95 0.04 0.02 Matches are distributed among these distances: 39 46 0.26 40 129 0.74 ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24 Consensus pattern (40 bp): TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA Found at i:82415387 original size:40 final size:40 Alignment explanation
Indices: 82415273--82415461 Score: 150 Period size: 40 Copynumber: 4.7 Consensus size: 40 82415263 ATACATCACT * ** * * * * 82415273 AGCACGAATGCTCTTCGGAACTTAGTCCGGATA-CATCACT 1 AGCACAAATGC-CTTCGGGTCTTAGCCCGGATATAACCACA * ** 82415313 AGCACGAATGCTCTTCGGAACTTAG-CCGGATATAACCACA 1 AGCACAAATGC-CTTCGGGTCTTAGCCCGGATATAACCACA * * * * * 82415353 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAACAACTC 1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCAC-A ** * 82415394 A-CACAAATGCCTTCGGGTCTTAGCCCGGATATATTCACT 1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCACA * * 82415433 AGCATAAATGCCTTCGGGACTTAGCCCGG 1 AGCACAAATGCCTTCGGGTCTTAGCCCGG 82415462 GTATCATTCA Statistics Matches: 125, Mismatches: 20, Indels: 8 0.82 0.13 0.05 Matches are distributed among these distances: 39 18 0.14 40 106 0.85 41 1 0.01 ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24 Consensus pattern (40 bp): AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCACA Found at i:82415408 original size:119 final size:119 Alignment explanation
Indices: 82415139--82415458 Score: 328 Period size: 119 Copynumber: 2.7 Consensus size: 119 82415129 CGGGACCTAG * * * 82415139 CCCGGATGCATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG 1 CCCGGATACAACACTAGCACAAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG * * * * * 82415204 CTCCTC-GAACTTAGTCCGGATACATCACTAGCACGAATGCTCCTCAGAACTTAG 66 CTCTTCGGAACTTAG-CCGGATAAACCACAAGCACGAATGCTCCTCAGAACTTAA * * * 82415258 TCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG 1 CCCGGATACAACACTAGCACAAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG * * ** 82415323 CTCTTCGGAACTTAGCCGGATATAACCACAAGCAC-AATTGC-CTTCGGGTCTTAA 66 CTCTTCGGAACTTAGCCGGATA-AACCACAAGCACGAA-TGCTCCTCAGAACTTAA * * ** * * ** 82415377 CCCGGGTATAACAACTCA-CACAAATGC-CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAA 1 CCCGGATACAAC-ACT-AGCACAAATGCTCTTCGGAACTTAGTCCGGATACA-TCACTAGCACGA * 82415440 ATGC-CTTCGGGACTTAGCC 63 ATGCTCTTCGGAACTTAGCC 82415459 CGGGTATCAT Statistics Matches: 172, Mismatches: 23, Indels: 12 0.83 0.11 0.06 Matches are distributed among these distances: 119 126 0.73 120 45 0.26 121 1 0.01 ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24 Consensus pattern (119 bp): CCCGGATACAACACTAGCACAAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG CTCTTCGGAACTTAGCCGGATAAACCACAAGCACGAATGCTCCTCAGAACTTAA Found at i:82417490 original size:49 final size:49 Alignment explanation
Indices: 82417422--82417653 Score: 356 Period size: 49 Copynumber: 4.7 Consensus size: 49 82417412 ATTCACATTA * * * 82417422 GCCATTCGGCTTTACCACATATATATACACTTTCACATTCATCACATCG 1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG * * 82417471 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG 1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG * 82417520 GCCATTAGGCCTTATCACATATATATATACTTTCACATTCATCACATCG 1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG * * * * 82417569 GCCATTAGGCCTTATCACATATACATACATTTTCGCATTCATCGCATCG 1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG * * 82417618 GCCATTAGGCCTCATCACATATATATACATTTTCAC 1 GCCATTAGGCCTTATCACATATATATACACTTTCAC 82417654 GAATCTTGAT Statistics Matches: 167, Mismatches: 16, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 49 167 1.00 ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32 Consensus pattern (49 bp): GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG Found at i:82421731 original size:40 final size:40 Alignment explanation
Indices: 82421495--82421718 Score: 378 Period size: 40 Copynumber: 5.6 Consensus size: 40 82421485 CCGGCATGAT * * * * 82421495 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAA 1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA 82421535 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA 1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA * 82421575 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA 1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA * * 82421615 TGCTCCTCAGAACTTAGTCCGGATACATCACTAGCACGAA 1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA 82421655 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA 1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA 82421695 TGCTCTTCGGAACTTAG-CCGGATA 1 TGCTCTTCGGAACTTAGTCCGGATA 82421719 TAACCACAAG Statistics Matches: 176, Mismatches: 8, Indels: 1 0.95 0.04 0.01 Matches are distributed among these distances: 39 7 0.04 40 169 0.96 ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24 Consensus pattern (40 bp): TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA Found at i:82421761 original size:40 final size:40 Alignment explanation
Indices: 82421647--82421835 Score: 150 Period size: 40 Copynumber: 4.7 Consensus size: 40 82421637 ATACATCACT * ** * * * * 82421647 AGCACGAATGCTCTTCGGAACTTAGTCCGGATA-CATCACT 1 AGCACAAATGC-CTTCGGGTCTTAGCCCGGATATAACCACA * ** 82421687 AGCACGAATGCTCTTCGGAACTTAG-CCGGATATAACCACA 1 AGCACAAATGC-CTTCGGGTCTTAGCCCGGATATAACCACA * * * * * 82421727 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAACAACTC 1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCAC-A ** * 82421768 A-CACAAATGCCTTCGGGTCTTAGCCCGGATATATTCACT 1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCACA * * 82421807 AGCATAAATGCCTTCGGGACTTAGCCCGG 1 AGCACAAATGCCTTCGGGTCTTAGCCCGG 82421836 GTATCATTCA Statistics Matches: 125, Mismatches: 20, Indels: 8 0.82 0.13 0.05 Matches are distributed among these distances: 39 18 0.14 40 106 0.85 41 1 0.01 ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24 Consensus pattern (40 bp): AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCACA Found at i:82421777 original size:120 final size:119 Alignment explanation
Indices: 82421512--82421832 Score: 337 Period size: 120 Copynumber: 2.7 Consensus size: 119 82421502 CGGGACCTAG * * * 82421512 CCCGGATGCATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG 1 CCCGGATACAACACTAGCACAAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG * * * * * 82421577 CTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCCTCAGAACTTAG 66 CTCTTCGGAACTTAG-CCGGATAAACCACAAGCACGAATGCTCCTCAGAACTTAA * * * 82421632 TCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG 1 CCCGGATACAACACTAGCACAAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG * * ** 82421697 CTCTTCGGAACTTAGCCGGATATAACCACAAGCAC-AATTGC-CTTCGGGTCTTAA 66 CTCTTCGGAACTTAGCCGGATA-AACCACAAGCACGAA-TGCTCCTCAGAACTTAA * * ** * * ** 82421751 CCCGGGTATAACAACTCA-CACAAATGC-CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAA 1 CCCGGATACAAC-ACT-AGCACAAATGCTCTTCGGAACTTAGTCCGGATACA-TCACTAGCACGA * 82421814 ATGC-CTTCGGGACTTAGCC 63 ATGCTCTTCGGAACTTAGCC 82421833 CGGGTATCAT Statistics Matches: 173, Mismatches: 23, Indels: 11 0.84 0.11 0.05 Matches are distributed among these distances: 119 58 0.34 120 114 0.66 121 1 0.01 ACGTcount: A:0.28, C:0.29, G:0.20, T:0.24 Consensus pattern (119 bp): CCCGGATACAACACTAGCACAAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG CTCTTCGGAACTTAGCCGGATAAACCACAAGCACGAATGCTCCTCAGAACTTAA Found at i:82423883 original size:49 final size:49 Alignment explanation
Indices: 82423814--82424027 Score: 347 Period size: 49 Copynumber: 4.4 Consensus size: 49 82423804 TTTACCACAT 82423814 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC 1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC * * 82423863 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC 1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC * 82423912 ATATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC 1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC * * * * * 82423961 ATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCAC 1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC * 82424010 ATATATATACATTTTCAC 1 ATATATATACACTTTCAC 82424028 GAATCTTGAT Statistics Matches: 152, Mismatches: 13, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 49 152 1.00 ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33 Consensus pattern (49 bp): ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC Found at i:82428956 original size:30 final size:30 Alignment explanation
Indices: 82428897--82428958 Score: 79 Period size: 30 Copynumber: 2.1 Consensus size: 30 82428887 ACATCAAAAT ** * * 82428897 TAAATTTTAATTATTTTTAACTAATAATTA 1 TAAATTTTAATTATAATTAACAAAAAATTA * 82428927 TAAATTTTAATTATAATTATCAAAAAATTA 1 TAAATTTTAATTATAATTAACAAAAAATTA 82428957 TA 1 TA 82428959 TTTTATGTTT Statistics Matches: 27, Mismatches: 5, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 30 27 1.00 ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48 Consensus pattern (30 bp): TAAATTTTAATTATAATTAACAAAAAATTA Found at i:82429125 original size:18 final size:18 Alignment explanation
Indices: 82429084--82429127 Score: 54 Period size: 18 Copynumber: 2.4 Consensus size: 18 82429074 TGTGATTATC * 82429084 ATAATTGTTTATTATATT 1 ATAATTATTTATTATATT * 82429102 AAAATTATTTATTA-ATGT 1 ATAATTATTTATTATAT-T 82429120 ATAATTAT 1 ATAATTAT 82429128 CAAAAATTAA Statistics Matches: 22, Mismatches: 3, Indels: 2 0.81 0.11 0.07 Matches are distributed among these distances: 17 2 0.09 18 20 0.91 ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55 Consensus pattern (18 bp): ATAATTATTTATTATATT Done.