Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 284 of 444
Found at i:82108019 original size:26 final size:26
Alignment explanation
Indices: 82107982--82108037 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
82107972 TTTCACCCCT
82107982 AAAATCCTAACCTTAAAAAAATTAAA
1 AAAATCCTAACCTTAAAAAAATTAAA
**
82108008 AAAACTCC-AACCTTATCAAAATTAAA
1 AAAA-TCCTAACCTTAAAAAAATTAAA
82108034 AAAA
1 AAAA
82108038 AAAAATCGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.61, C:0.18, G:0.00, T:0.21
Consensus pattern (26 bp):
AAAATCCTAACCTTAAAAAAATTAAA
Found at i:82108238 original size:18 final size:18
Alignment explanation
Indices: 82108215--82108249 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
82108205 AATTTAATTT
*
82108215 TTTTTATAATTTAAAAAC
1 TTTTTATAATCTAAAAAC
82108233 TTTTTATAATCTAAAAA
1 TTTTTATAATCTAAAAA
82108250 TATTGACGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.49
Consensus pattern (18 bp):
TTTTTATAATCTAAAAAC
Found at i:82109061 original size:17 final size:17
Alignment explanation
Indices: 82109039--82109072 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
82109029 TCGTTGAAAA
* *
82109039 GAATTTTTAATTTTTAT
1 GAATTTATAATATTTAT
82109056 GAATTTATAATATTTAT
1 GAATTTATAATATTTAT
82109073 TTAATCGAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (17 bp):
GAATTTATAATATTTAT
Found at i:82110186 original size:7 final size:7
Alignment explanation
Indices: 82110174--82110199 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
82110164 GGGATATTGA
82110174 TTTATGT
1 TTTATGT
82110181 TTTATGT
1 TTTATGT
82110188 TTTATGT
1 TTTATGT
82110195 TTTAT
1 TTTAT
82110200 TATTTGTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.12, T:0.73
Consensus pattern (7 bp):
TTTATGT
Found at i:82116078 original size:21 final size:21
Alignment explanation
Indices: 82116054--82116094 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
82116044 CCACCTTTTC
*
82116054 CATCCCCACCTCCACCTCCAA
1 CATCCCCACCGCCACCTCCAA
* *
82116075 CATCTCCATCGCCACCTCCA
1 CATCCCCACCGCCACCTCCA
82116095 CCTCCTCCGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.59, G:0.02, T:0.17
Consensus pattern (21 bp):
CATCCCCACCGCCACCTCCAA
Found at i:82117369 original size:79 final size:79
Alignment explanation
Indices: 82117238--82117389 Score: 184
Period size: 79 Copynumber: 1.9 Consensus size: 79
82117228 AGTATGTATC
* * * *
82117238 TGTTTTAAAAGTTAAAGAGTCTGGATGATAACCCTTCTAATTGTTCTTTTGTTGAACGAT-TGAG
1 TGTTTTAAAAGTCAAAGAGTCTGGATGATAACCCCTCTAATTGTTCCTTTGTTGAA-AATCTGAG
*
82117302 CTATGTTATGCTCTT
65 CTATATTATGCTCTT
* * *
82117317 TGTTTTAAAAGTCAAAGAGTGTGGATGGA-AACCCCTGTCATCT-TTCCTTTGTTGAAAATCTGA
1 TGTTTTAAAAGTCAAAGAGTCTGGAT-GATAACCCCTCTAAT-TGTTCCTTTGTTGAAAATCTGA
82117380 GCTATATTAT
64 GCTATATTAT
82117390 CCTTCTTTCG
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
78 2 0.03
79 57 0.92
80 3 0.05
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (79 bp):
TGTTTTAAAAGTCAAAGAGTCTGGATGATAACCCCTCTAATTGTTCCTTTGTTGAAAATCTGAGC
TATATTATGCTCTT
Found at i:82125971 original size:12 final size:12
Alignment explanation
Indices: 82125925--82125976 Score: 50
Period size: 14 Copynumber: 4.0 Consensus size: 12
82125915 ATTGCAAAAT
*
82125925 AAATAGTATATA
1 AAATAATATATA
*
82125937 TATATATATATATA
1 -AAATA-ATATATA
82125951 AAAGGTAATATATA
1 AAA--TAATATATA
82125965 AAATAATATATA
1 AAATAATATATA
82125977 CTTCAATCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
12 9 0.27
13 6 0.18
14 16 0.48
15 2 0.06
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.37
Consensus pattern (12 bp):
AAATAATATATA
Found at i:82127520 original size:44 final size:43
Alignment explanation
Indices: 82127472--82127610 Score: 147
Period size: 44 Copynumber: 3.2 Consensus size: 43
82127462 CGATACATGG
** *
82127472 AGATAAGATCTGTAATCTTCAGTCTGCT-TCCTGCAACTTCAGGA
1 AGATAAGA-CTGT-ATCTTCAACCTGCTCTCCTGCAACCTCAGGA
** *
82127516 AGATAAGACTTGTATCTTCAACCTGCTCTTTTGCTACCTCAGGA
1 AGATAAGAC-TGTATCTTCAACCTGCTCTCCTGCAACCTCAGGA
* *
82127560 AGATAAGACCTGTATCTTCAACCTGCTCTCTTGCTACCTCA-GA
1 AGATAAGA-CTGTATCTTCAACCTGCTCTCCTGCAACCTCAGGA
82127603 GAGATAAG
1 -AGATAAG
82127611 GCTGGTGGCT
Statistics
Matches: 84, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
43 15 0.18
44 68 0.81
45 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (43 bp):
AGATAAGACTGTATCTTCAACCTGCTCTCCTGCAACCTCAGGA
Found at i:82127652 original size:88 final size:87
Alignment explanation
Indices: 82127405--82127655 Score: 220
Period size: 88 Copynumber: 2.8 Consensus size: 87
82127395 GCATATTGAG
* * *
82127405 CCTGCTCCACTGCAACTTCAGAGAGATAAGACTGGTGGCTAAAATCTGCTCCATAGCCGATACAT
1 CCTGCTTC-CTGCAACCTCAGAGAGATAAGACTGGTGGCTAAAATCTGCTCCATAG-CGATATAT
* *
82127470 GGAGATAAGATCTGTAATCTTCAG
64 GGAGATAAGACCTGTAATCTTCAA
* * * ** ** * ** * * **
82127494 TCTGCTTCCTGCAACTTCAG-GAAGATAAGACTTGTATCTTCAACCTGCTCTTTTGCTACCTCA-
1 CCTGCTTCCTGCAACCTCAGAG-AGATAAGACTGGTGGCTAAAATCTGCTCCATAGCGATAT-AT
82127557 GGAAGATAAGACCTGT-ATCTTCAA
64 GG-AGATAAGACCTGTAATCTTCAA
* * *
82127581 CCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGTCGATATAT
1 CCTGCT-TCCTGCAACCTCAGAGAGATAAGACTGGTGGCTAAAATCTGCTCCATAG-CGATATAT
82127646 GGAGATAAGA
64 GGAGATAAGA
82127656 TTCGCCATCT
Statistics
Matches: 121, Mismatches: 34, Indels: 15
0.71 0.20 0.09
Matches are distributed among these distances:
87 17 0.14
88 92 0.76
89 12 0.10
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (87 bp):
CCTGCTTCCTGCAACCTCAGAGAGATAAGACTGGTGGCTAAAATCTGCTCCATAGCGATATATGG
AGATAAGACCTGTAATCTTCAA
Found at i:82127782 original size:176 final size:177
Alignment explanation
Indices: 82127415--82128065 Score: 748
Period size: 176 Copynumber: 3.7 Consensus size: 177
82127405 CCTGCTCCAC
* *
82127415 TGCAACTTCAGAGAGATAAGACTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
1 TGCAACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
** * *
82127480 -TCTGTAATCTTC-AGTCTGCTTCC-T-G-C-A-ACTTCAGGAAGATAAGA-CTTGT-ATCTTCA
66 CTC-GCCATCTTCGA-TCTGC-TCCATAGCCGATACAT-A-G-AGATAAGATC-TGTAATTTTCA
** * ** * * *
82127536 ACCTGCTCTTTTGCTACCTCAGGAAGATAAGACCTGTATCTTCAACCTGCTCTCT
124 GTCTGAT-TCCTGCAACTTCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCT
* * *
82127591 TGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGTCGATATATGGAGATAAGA
1 TGCAACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
* *
82127656 TTCGCCATCTTCGATCTGTTCCATAGCCGATACATAGAGATAAGATCTGTAATTTTCAGTCTGAT
66 CTCGCCATCTTCGATCTGCTCCATAGCCGATACATAGAGATAAGATCTGTAATTTTCAGTCTGAT
* *
82127721 TCCTGCAACTTCAGGAAGATAAGACTTGTATCTTTAACTTGCTCTC-
131 TCCTGCAACTTCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCT
* * * ** *
82127767 TGCAACTTTAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCGTAATCAATACATGGAGATAAGA
1 TGCAACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
* * * * * *
82127832 CTCGCCATTTTCGATCTGCTCCATAGCCGATAAATGGAGATAATATCTATATTTTTCAGTCT-AC
66 CTCGCCATCTTCGATCTGCTCCATAGCCGATACATAGAGATAAGATCTGTAATTTTCAGTCTGA-
* * *
82127896 TTCCTGCAACTTCAAGAATATAAGACTTGTACCTTCAACCTGCTCTCT
130 TTCCTGCAACTTCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCT
* * * *
82127944 TGCTACCTTAGAGAGATAAGGTTGGTGTCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
1 TGCAACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
* * * *
82128009 CTCGTCATTTTCGATCTACTCCATAGTCGATACATAGAGATAAGATCTGTAATTTTC
66 CTCGCCATCTTCGATCTGCTCCATAGCCGATACATAGAGATAAGATCTGTAATTTTC
82128066 GCCGATGTCA
Statistics
Matches: 408, Mismatches: 56, Indels: 21
0.84 0.12 0.04
Matches are distributed among these distances:
175 4 0.01
176 226 0.55
177 160 0.39
178 13 0.03
179 2 0.00
180 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (177 bp):
TGCAACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
CTCGCCATCTTCGATCTGCTCCATAGCCGATACATAGAGATAAGATCTGTAATTTTCAGTCTGAT
TCCTGCAACTTCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCT
Found at i:82128033 original size:177 final size:177
Alignment explanation
Indices: 82127558--82128065 Score: 750
Period size: 176 Copynumber: 2.9 Consensus size: 177
82127548 GCTACCTCAG
* *
82127558 GAAGATAAGACCTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAA
1 GAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAA
* * * *
82127623 AATCTGCTCCATAGTCGATATATGGAGATAAGATTCGCCATCTTCGATCTGTTCCATAGCCGATA
66 AATCTGCTCCATAGTCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATA
*
82127688 CATAGAGATAAGATCTGTAATTTTCAGTCTGATTCCTGCAACTTCAG
131 CATAGAGATAAGATCTGTAATTTTCAGTCTGATTCCTGCAACTTCAA
* * * *
82127735 GAAGATAAGACTTGTATCTTTAACTTGCTCTC-TGCAACTTTAGAGAGATAAGGCTGGTGGCTAA
1 GAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAA
* * *
82127799 AATCTGCTCCGTAATCAATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATA
66 AATCTGCTCCATAGTCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATA
* * * * *
82127864 AATGGAGATAATATCTATATTTTTCAGTCT-ACTTCCTGCAACTTCAA
131 CATAGAGATAAGATCTGTAATTTTCAGTCTGA-TTCCTGCAACTTCAA
* * * *
82127911 GAATATAAGACTTGTACCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGTTGGTGTCTAA
1 GAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAA
* * * *
82127976 AATCTGCTCCATAGCCGATACATGGAGATAAGACTCGTCATTTTCGATCTACTCCATAGTCGATA
66 AATCTGCTCCATAGTCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATA
82128041 CATAGAGATAAGATCTGTAATTTTC
131 CATAGAGATAAGATCTGTAATTTTC
82128066 GCCGATGTCA
Statistics
Matches: 290, Mismatches: 39, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
175 1 0.00
176 154 0.53
177 135 0.47
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (177 bp):
GAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAA
AATCTGCTCCATAGTCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATA
CATAGAGATAAGATCTGTAATTTTCAGTCTGATTCCTGCAACTTCAA
Found at i:82128034 original size:45 final size:45
Alignment explanation
Indices: 82127977--82128066 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 45
82127967 GGTGTCTAAA
* * *
82127977 ATCTGCTCCATAGCCGATACATGGAGATAAGA-CTCGTCATTTTCG
1 ATCTACTCCATAGCCGATACATAGAGATAAGATCT-GTAATTTTCG
*
82128022 ATCTACTCCATAGTCGATACATAGAGATAAGATCTGTAATTTTCG
1 ATCTACTCCATAGCCGATACATAGAGATAAGATCTGTAATTTTCG
82128067 CCGATGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
45 38 0.95
46 2 0.05
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (45 bp):
ATCTACTCCATAGCCGATACATAGAGATAAGATCTGTAATTTTCG
Found at i:82128187 original size:23 final size:22
Alignment explanation
Indices: 82128136--82128188 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
82128126 TATGTTTATG
*
82128136 CCAAATGATTAGAATGCTATGA
1 CCAAATGATTAGAATGCTATAA
*
82128158 CCGAAATGAATTAG-ATGCTCCTAA
1 CC-AAATG-ATTAGAATGCT-ATAA
82128182 CCAAATG
1 CCAAATG
82128189 TGTTATGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
22 2 0.08
23 15 0.58
24 9 0.35
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.25
Consensus pattern (22 bp):
CCAAATGATTAGAATGCTATAA
Found at i:82143248 original size:12 final size:12
Alignment explanation
Indices: 82143200--82143263 Score: 56
Period size: 14 Copynumber: 4.9 Consensus size: 12
82143190 ATGAAATTGC
82143200 AATATATATATATA
1 AATA-ATATATA-A
*
82143214 TATATATATATATA
1 AATA-ATATATA-A
*
82143228 TATATATATATAA
1 AATA-ATATATAA
*
82143241 AGTAATATATAA
1 AATAATATATAA
82143253 AATAATATATA
1 AATAATATATA
82143264 CGTCAATCAA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
12 18 0.39
13 3 0.07
14 25 0.54
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (12 bp):
AATAATATATAA
Found at i:82143251 original size:2 final size:2
Alignment explanation
Indices: 82143201--82143239 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
82143191 TGAAATTGCA
82143201 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
82143240 AAGTAATATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:82146384 original size:19 final size:19
Alignment explanation
Indices: 82146360--82146400 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
82146350 TATTTTAAAG
82146360 TTATTTAGGTAAATAAATC
1 TTATTTAGGTAAATAAATC
*
82146379 TTATTTAGGTAGATAAATC
1 TTATTTAGGTAAATAAATC
82146398 TTA
1 TTA
82146401 GAATAAATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.39, C:0.05, G:0.12, T:0.44
Consensus pattern (19 bp):
TTATTTAGGTAAATAAATC
Found at i:82155874 original size:242 final size:242
Alignment explanation
Indices: 82155449--82155933 Score: 961
Period size: 242 Copynumber: 2.0 Consensus size: 242
82155439 GATCTCAAGC
82155449 AGCTGGATTTTTTTTAATCTTATTGATTTTGTATCAAGCTCAAGTTTCTTTCAGGCTTGAGCTCA
1 AGCTGGATTTTTTTTAATCTTATTGATTTTGTATCAAGCTCAAGTTTCTTTCAGGCTTGAGCTCA
82155514 ACTCGGCCTGGTTAAGCCCCTAGCCTTACCTTATATCTACGGCCCTATTTCTACTTCTCAATTTG
66 ACTCGGCCTGGTTAAGCCCCTAGCCTTACCTTATATCTACGGCCCTATTTCTACTTCTCAATTTG
82155579 AATATGAAGTTACTTGATCCTTCAAATCTTGGTCTTTATCAAATGGTCAAGGTTCTATTTCCATG
131 AATATGAAGTTACTTGATCCTTCAAATCTTGGTCTTTATCAAATGGTCAAGGTTCTATTTCCATG
82155644 AATGCAGTTGAAAGAAAGAGCAGAAAAGCTTGAAAATTGGAGAATGA
196 AATGCAGTTGAAAGAAAGAGCAGAAAAGCTTGAAAATTGGAGAATGA
82155691 AGCTGGATTTTTTTTAATCTTATTGATTTTGTATCAAGCTCAAGTTTCTTTCAGGCTTGAGCTCA
1 AGCTGGATTTTTTTTAATCTTATTGATTTTGTATCAAGCTCAAGTTTCTTTCAGGCTTGAGCTCA
*
82155756 ACTCGGCCTGGTTAAGCCCCTAGCCTTACCTTATATCTATGGCCCTATTTCTACTTCTCAATTTG
66 ACTCGGCCTGGTTAAGCCCCTAGCCTTACCTTATATCTACGGCCCTATTTCTACTTCTCAATTTG
82155821 AATATGAAGTTACTTGATCCTTCAAATCTTGGTCTTTATCAAATGGTCAAGGTTCTATTTCCATG
131 AATATGAAGTTACTTGATCCTTCAAATCTTGGTCTTTATCAAATGGTCAAGGTTCTATTTCCATG
82155886 AATGCAGTTGAAAGAAAGAGCAGAAAAGCTTGAAAATTGGAGAATGA
196 AATGCAGTTGAAAGAAAGAGCAGAAAAGCTTGAAAATTGGAGAATGA
82155933 A
1 A
82155934 ACAAACGCTA
Statistics
Matches: 242, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
242 242 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (242 bp):
AGCTGGATTTTTTTTAATCTTATTGATTTTGTATCAAGCTCAAGTTTCTTTCAGGCTTGAGCTCA
ACTCGGCCTGGTTAAGCCCCTAGCCTTACCTTATATCTACGGCCCTATTTCTACTTCTCAATTTG
AATATGAAGTTACTTGATCCTTCAAATCTTGGTCTTTATCAAATGGTCAAGGTTCTATTTCCATG
AATGCAGTTGAAAGAAAGAGCAGAAAAGCTTGAAAATTGGAGAATGA
Found at i:82164286 original size:2 final size:2
Alignment explanation
Indices: 82164275--82164311 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
82164265 TTAAATTTGA
82164275 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82164312 TTTAAAATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:82170425 original size:38 final size:39
Alignment explanation
Indices: 82170381--82170455 Score: 143
Period size: 38 Copynumber: 1.9 Consensus size: 39
82170371 AAAAAGAAAG
82170381 GAAACTTTTTTAAATTAC-AAAAAAATATTATTGTTCCT
1 GAAACTTTTTTAAATTACAAAAAAAATATTATTGTTCCT
82170419 GAAACTTTTTTAAATTACAAAAAAAATATTATTGTTC
1 GAAACTTTTTTAAATTACAAAAAAAATATTATTGTTC
82170456 TTGAGTTCGT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
38 18 0.50
39 18 0.50
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.41
Consensus pattern (39 bp):
GAAACTTTTTTAAATTACAAAAAAAATATTATTGTTCCT
Found at i:82171117 original size:11 final size:11
Alignment explanation
Indices: 82171101--82171129 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
82171091 TTTATTAAGT
82171101 TTTATTTCAGA
1 TTTATTTCAGA
82171112 TTTATTTCAGA
1 TTTATTTCAGA
82171123 TTTATTT
1 TTTATTT
82171130 TATAAATCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.24, C:0.07, G:0.07, T:0.62
Consensus pattern (11 bp):
TTTATTTCAGA
Found at i:82177397 original size:32 final size:32
Alignment explanation
Indices: 82177361--82177425 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
82177351 TGTATGCATT
82177361 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
82177393 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
82177425 T
1 T
82177426 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:82178937 original size:26 final size:26
Alignment explanation
Indices: 82178907--82178961 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
82178897 TTTATAGTTT
82178907 TACCCCTAGGAGATAAATT-ACCTAAA
1 TACCCCTAGG-GATAAATTGACCTAAA
*
82178933 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCTAAA
82178959 TAC
1 TAC
82178962 ATGTTTGACT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 7 0.26
26 20 0.74
ACGTcount: A:0.38, C:0.24, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCTAAA
Found at i:82185102 original size:43 final size:43
Alignment explanation
Indices: 82184960--82185167 Score: 203
Period size: 43 Copynumber: 5.0 Consensus size: 43
82184950 TAAAGCTCGT
* * * * *
82184960 ACAATGCC-ATATCTCAGATATGGTCTTACATGTCATCACATA-
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA-AC
* * * * * *
82185002 TCGATGCCACTATCCCAGACAGGGTCTTACACGAAAT--C-A-
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAC
* * * * *
82185041 ACGATGCTAATGTCCCAGAGATGGTCTTGCACGTAATCACAAT
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAC
82185084 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAC
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAC
* *
82185127 ACAATGCCAATGTCCCAGACATGGTCTTACATGTAACCACA
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
82185168 TCTCTGTAAC
Statistics
Matches: 137, Mismatches: 24, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
39 30 0.22
41 2 0.01
42 7 0.05
43 98 0.72
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (43 bp):
ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAC
Found at i:82185116 original size:82 final size:85
Alignment explanation
Indices: 82184960--82185168 Score: 221
Period size: 82 Copynumber: 2.5 Consensus size: 85
82184950 TAAAGCTCGT
* * * * * * *
82184960 ACAATGCC-ATATCTCAGATATGGTCTTACATGTCATCACATATCGATGCCACTATCCCAGACAG
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCAATGCCAATATCCCAGACAG
82185024 GGTCTTACACGAAAT-C-A-
66 GGTCTTACACGAAATACAAC
* * * * *
82185041 ACGATGCTAATGTCCCAGAGATGGTCTTGCACGTAATCACA-ATACAATGCCAATGTCCCAGACA
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CAATGCCAATATCCCAGACA
* *
82185105 TGGTCTTACACGTAATCACAAC
65 GGGTCTTACACGAAAT-ACAAC
* *
82185127 ACAATGCCAATGTCCCAGACATGGTCTTACATGTAACCACAT
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAT
82185169 CTCTGTAACC
Statistics
Matches: 102, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
81 8 0.08
82 57 0.56
84 1 0.01
85 1 0.01
86 35 0.34
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (85 bp):
ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCAATGCCAATATCCCAGACAG
GGTCTTACACGAAATACAAC
Found at i:82195589 original size:25 final size:25
Alignment explanation
Indices: 82195561--82195608 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
82195551 TAAGTTAATC
82195561 AGAGTTTAAGTGGAA-AACTAAAAAT
1 AGAGTTTAAGTGGAAGAAC-AAAAAT
*
82195586 AGAGTTTAATTGGAAGAACAAAA
1 AGAGTTTAAGTGGAAGAACAAAA
82195609 GTTGAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 18 0.86
26 3 0.14
ACGTcount: A:0.52, C:0.04, G:0.21, T:0.23
Consensus pattern (25 bp):
AGAGTTTAAGTGGAAGAACAAAAAT
Found at i:82197367 original size:4 final size:4
Alignment explanation
Indices: 82197352--82197402 Score: 75
Period size: 4 Copynumber: 12.0 Consensus size: 4
82197342 AATAGGGAGA
82197352 AAAG AAAGG AAAG AAAG AAAAG AAAG AAAG AAAG AAAAG AAAG AAAG AAAG
1 AAAG AAA-G AAAG AAAG -AAAG AAAG AAAG AAAG -AAAG AAAG AAAG AAAG
82197403 GAGAAACTAG
Statistics
Matches: 44, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
4 32 0.73
5 12 0.27
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:82197370 original size:13 final size:13
Alignment explanation
Indices: 82197352--82197402 Score: 77
Period size: 13 Copynumber: 4.0 Consensus size: 13
82197342 AATAGGGAGA
82197352 AAAGAAAGGAAAG
1 AAAGAAAGGAAAG
*
82197365 AAAGAAAAGAAAG
1 AAAGAAAGGAAAG
*
82197378 AAAGAAAGAAAAG
1 AAAGAAAGGAAAG
82197391 AAAGAAA-GAAAG
1 AAAGAAAGGAAAG
82197403 GAGAAACTAG
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
12 4 0.12
13 30 0.88
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (13 bp):
AAAGAAAGGAAAG
Found at i:82197382 original size:17 final size:17
Alignment explanation
Indices: 82197349--82197402 Score: 99
Period size: 17 Copynumber: 3.1 Consensus size: 17
82197339 CAAAATAGGG
82197349 AGAAAAGAAAGGAAAGAA
1 AGAAAAGAAA-GAAAGAA
82197367 AGAAAAGAAAGAAAGAA
1 AGAAAAGAAAGAAAGAA
82197384 AGAAAAGAAAGAAAGAA
1 AGAAAAGAAAGAAAGAA
82197401 AG
1 AG
82197403 GAGAAACTAG
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
17 26 0.72
18 10 0.28
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (17 bp):
AGAAAAGAAAGAAAGAA
Found at i:82197681 original size:30 final size:28
Alignment explanation
Indices: 82197627--82197683 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 28
82197617 AATTGTGGAA
82197627 TAAATTGTAAAATTTGAATATTAGGGAC
1 TAAATTGTAAAATTTGAATATTAGGGAC
82197655 TAAATTGTGAAAATTTTGAA-ATTTAGGGA
1 TAAATTGT-AAAA-TTTGAATA-TTAGGGA
82197684 TTTAAGTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
28 8 0.31
29 5 0.19
30 13 0.50
ACGTcount: A:0.42, C:0.02, G:0.19, T:0.37
Consensus pattern (28 bp):
TAAATTGTAAAATTTGAATATTAGGGAC
Found at i:82203451 original size:26 final size:26
Alignment explanation
Indices: 82203415--82203524 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
82203405 TGATACAAAT
82203415 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
82203441 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
82203467 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
82203493 TGATAATGGGTTAGGTAAATGATT-CA
1 TGATAATAGGTTAGGTAAATG-TTCCA
82203519 TGATAA
1 TGATAA
82203525 GAATTTCATG
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 79 0.98
27 2 0.02
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:82205192 original size:27 final size:27
Alignment explanation
Indices: 82205137--82205256 Score: 170
Period size: 27 Copynumber: 4.4 Consensus size: 27
82205127 GAGGAAGCGT
*
82205137 TCTGGTGGCTATGCCAC-AATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
82205163 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
82205190 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
82205217 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
*
82205245 TCTGGTGACTCT
1 TCTGGTGGCTCT
82205257 ATCACATTAT
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
26 16 0.19
27 57 0.68
28 11 0.13
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.34
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:82205226 original size:54 final size:55
Alignment explanation
Indices: 82205137--82205275 Score: 194
Period size: 54 Copynumber: 2.6 Consensus size: 55
82205127 GAGGAAGCGT
* *
82205137 TCTGGTGGCTATGCCACA-ATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
82205190 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* **
82205245 TCTGGTGACTCTATCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
82205276 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
53 17 0.22
54 43 0.56
55 17 0.22
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.35
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:82205265 original size:27 final size:27
Alignment explanation
Indices: 82205137--82205275 Score: 169
Period size: 27 Copynumber: 5.2 Consensus size: 27
82205127 GAGGAAGCGT
* *
82205137 TCTGGTGGCTATGCCACAATATCTG-A
1 TCTGGTGGCTCTGCCACATTATCTGTA
*
82205163 TCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCAC-ATTATCTGTA
82205190 TCTGGTGGCTCTGCCACATATATCTGT-
1 TCTGGTGGCTCTGCCACAT-TATCTGTA
82205217 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCAC-ATTATCTGTA
* **
82205245 TCTGGTGACTCTATCACATTATCTGT-
1 TCTGGTGGCTCTGCCACATTATCTGTA
82205271 TCTGG
1 TCTGG
82205276 CAGCCATGCT
Statistics
Matches: 103, Mismatches: 5, Indels: 10
0.87 0.04 0.08
Matches are distributed among these distances:
26 22 0.21
27 65 0.63
28 16 0.16
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACATTATCTGTA
Found at i:82209282 original size:26 final size:26
Alignment explanation
Indices: 82209246--82209355 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
82209236 TGATACAAAT
82209246 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
82209272 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
82209298 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
82209324 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
82209350 TGATAA
1 TGATAA
82209356 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:82211028 original size:27 final size:26
Alignment explanation
Indices: 82210973--82211111 Score: 170
Period size: 27 Copynumber: 5.2 Consensus size: 26
82210963 GAGGAAGCGT
*
82210973 TCTGGTGGCTATGCCACAATATCTGA
1 TCTGGTGGCTCTGCCACAATATCTGA
82210999 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCAC-AATATCTGA
* *
82211026 TCTGGTGGCTCTGCCATATATATCTGT
1 TCTGGTGGCTCTGCCACA-ATATCTGA
*
82211053 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCAC-AATATCTG-A
* * * *
82211081 TCTGGTGACTCTGTCACATTATCTGT
1 TCTGGTGGCTCTGCCACAATATCTGA
82211107 TCTGG
1 TCTGG
82211112 CAGCCATGCT
Statistics
Matches: 100, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
26 22 0.22
27 62 0.62
28 16 0.16
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (26 bp):
TCTGGTGGCTCTGCCACAATATCTGA
Found at i:82211060 original size:54 final size:55
Alignment explanation
Indices: 82210973--82211111 Score: 194
Period size: 54 Copynumber: 2.6 Consensus size: 55
82210963 GAGGAAGCGT
* *
82210973 TCTGGTGGCTATGCCACA-ATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* * *
82211026 TCTGGTGGCTCTGCCATATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
82211081 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
82211112 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
53 16 0.21
54 43 0.57
55 17 0.22
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:82212996 original size:9 final size:9
Alignment explanation
Indices: 82212982--82213017 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
82212972 AATAGGGAGA
82212982 AAAGAAAGG
1 AAAGAAAGG
*
82212991 AAAGAAAGA
1 AAAGAAAGG
82213000 AAAGAAA-G
1 AAAGAAAGG
82213008 AAAGAAAGG
1 AAAGAAAGG
82213017 A
1 A
82213018 GAAACTAGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
8 7 0.29
9 17 0.71
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (9 bp):
AAAGAAAGG
Found at i:82212997 original size:4 final size:4
Alignment explanation
Indices: 82212982--82213015 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
82212972 AATAGGGAGA
82212982 AAAG AAAGG AAAG AAAG AAAAG AAAG AAAG AAAG
1 AAAG AAA-G AAAG AAAG -AAAG AAAG AAAG AAAG
82213016 GAGAAACTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:82213000 original size:13 final size:13
Alignment explanation
Indices: 82212982--82213017 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
82212972 AATAGGGAGA
82212982 AAAGAAAGGAAAG
1 AAAGAAAGGAAAG
*
82212995 AAAGAAAAGAAAG
1 AAAGAAAGGAAAG
82213008 AAAGAAAGGA
1 AAAGAAAGGA
82213018 GAAACTAGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (13 bp):
AAAGAAAGGAAAG
Found at i:82213296 original size:30 final size:28
Alignment explanation
Indices: 82213242--82213298 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 28
82213232 AATTTTGGAA
*
82213242 TAAATTGTAAATTTTGAGTATTAGGGAC
1 TAAATTGTAAATTTTGAATATTAGGGAC
82213270 TAAATTGTGAAATTTTTGAA-ATTTAGGGA
1 TAAATTGT-AAA-TTTTGAATA-TTAGGGA
82213299 TTTAAGTGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 8 0.32
29 4 0.16
30 13 0.52
ACGTcount: A:0.37, C:0.02, G:0.21, T:0.40
Consensus pattern (28 bp):
TAAATTGTAAATTTTGAATATTAGGGAC
Found at i:82214413 original size:41 final size:40
Alignment explanation
Indices: 82214366--82214582 Score: 199
Period size: 41 Copynumber: 5.3 Consensus size: 40
82214356 GCGTTTGAAA
82214366 CAAAACGCCACTAAAAGCTGAGCAATAGTGGCGTTTTCATT
1 CAAAACGCCACTAAAAGCTGAGCAATAGTGGCGTTTT-ATT
* * *
82214407 CAAAACGCCGCTAAAAACTGAGTAATAGTGGCGTTTTTATT
1 CAAAACGCCACTAAAAGCTGAGCAATAGTGGCG-TTTTATT
* * * *
82214448 CAAAATGCC-GTAAAAAACTGAGAAATAGTGGCGTTTTATT
1 CAAAACGCCACT-AAAAGCTGAGCAATAGTGGCGTTTTATT
* * * *
82214488 CAAAACGCCGCAAAAAGCTGAG-ATATAGTGGCGCTTTAGGT
1 CAAAACGCCACTAAAAGCTGAGCA-ATAGTGGCGTTTTA-TT
* * *
82214529 CCAAACGCCAC-AAAAGGTTGAGCTATAGTGGCGTTTT-TGT
1 CAAAACGCCACTAAAA-GCTGAGCAATAGTGGCGTTTTAT-T
* *
82214569 AAAAACGCCGCTAA
1 CAAAACGCCACTAA
82214583 TATTTATTAT
Statistics
Matches: 146, Mismatches: 21, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
39 1 0.01
40 51 0.35
41 90 0.62
42 4 0.03
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAAACGCCACTAAAAGCTGAGCAATAGTGGCGTTTTATT
Found at i:82214557 original size:81 final size:80
Alignment explanation
Indices: 82214366--82214582 Score: 237
Period size: 81 Copynumber: 2.7 Consensus size: 80
82214356 GCGTTTGAAA
82214366 CAAAACGCCACTAAAAGCTGAGCAATAGTGGCGTTTTCATTCAAAACGCCGCTAAAAACTGAGTA
1 CAAAACGCCAC-AAAAGCTGAGCAATAGTGGCGTTTT-ATTCAAAACGCCGCTAAAAACTGAGTA
* *
82214431 ATAGTGGCGTTTTTATT
64 ATAGTGGCGTCTTTAGT
* * *
82214448 CAAAATGCCGTA-AAAAACTGAGAAATAGTGGCGTTTTATTCAAAACGCCGC-AAAAAGCTGAG-
1 CAAAACGCC--ACAAAAGCTGAGCAATAGTGGCGTTTTATTCAAAACGCCGCTAAAAA-CTGAGT
82214510 ATATAGTGGCG-CTTTAGGT
63 A-ATAGTGGCGTCTTTA-GT
* * * *
82214529 CCAAACGCCACAAAAGGTTGAGCTATAGTGGCGTTTT-TGTAAAAACGCCGCTAA
1 CAAAACGCCACAAAA-GCTGAGCAATAGTGGCGTTTTAT-TCAAAACGCCGCTAA
82214583 TATTTATTAT
Statistics
Matches: 114, Mismatches: 12, Indels: 18
0.79 0.08 0.12
Matches are distributed among these distances:
79 1 0.01
80 15 0.13
81 64 0.56
82 33 0.29
84 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAACGCCACAAAAGCTGAGCAATAGTGGCGTTTTATTCAAAACGCCGCTAAAAACTGAGTAAT
AGTGGCGTCTTTAGT
Found at i:82215147 original size:29 final size:29
Alignment explanation
Indices: 82215108--82215163 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
82215098 AAAATATGAA
*
82215108 GCCTAACCCCTAAATCATAACCGATGACC
1 GCCTAACCCCTAAATCATAACCCATGACC
*
82215137 GCCTAATCCCTAAATCATAACCCATGA
1 GCCTAACCCCTAAATCATAACCCATGA
82215164 TCTAAACTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.36, C:0.36, G:0.09, T:0.20
Consensus pattern (29 bp):
GCCTAACCCCTAAATCATAACCCATGACC
Found at i:82215359 original size:14 final size:15
Alignment explanation
Indices: 82215333--82215376 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
82215323 CTTTAAACCC
82215333 TTATAATACCCTAAA-
1 TTATAA-ACCCTAAAT
82215348 TTATAAACCCTAAAT
1 TTATAAACCCTAAAT
*
82215363 TTGTAAACCCTAAA
1 TTATAAACCCTAAA
82215377 AATAAATTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
14 8 0.30
15 19 0.70
ACGTcount: A:0.45, C:0.20, G:0.02, T:0.32
Consensus pattern (15 bp):
TTATAAACCCTAAAT
Found at i:82216380 original size:20 final size:20
Alignment explanation
Indices: 82216335--82216386 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
82216325 CCCCACCCAA
*
82216335 ATTTCCCCAAATCCCTAACT
1 ATTTCCCCAAATCCCTAAAT
*
82216355 -TTTCCCCTAATCCCTAAAT
1 ATTTCCCCAAATCCCTAAAT
*
82216374 ATTTCCCCGAATC
1 ATTTCCCCAAATC
82216387 AAAATCGAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 17 0.61
20 11 0.39
ACGTcount: A:0.27, C:0.38, G:0.02, T:0.33
Consensus pattern (20 bp):
ATTTCCCCAAATCCCTAAAT
Found at i:82218779 original size:23 final size:23
Alignment explanation
Indices: 82218749--82218797 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 23
82218739 ACATTAATCT
82218749 AATGTATGAA-TTGCAGCCCTTTA
1 AATGTATGAATTTG-AGCCCTTTA
82218772 AATGTATGAATTTGAGCCCTTTA
1 AATGTATGAATTTGAGCCCTTTA
82218795 AAT
1 AAT
82218798 AAACTTGAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 22 0.88
24 3 0.12
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (23 bp):
AATGTATGAATTTGAGCCCTTTA
Found at i:82218884 original size:27 final size:27
Alignment explanation
Indices: 82218845--82218898 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
82218835 TATTTGAAGT
82218845 ATGAATAACTATGAATAAGTTTTTATA
1 ATGAATAACTATGAATAAGTTTTTATA
*
82218872 ATGAATAAGTATGAATAAGTTTTTATA
1 ATGAATAACTATGAATAAGTTTTTATA
82218899 TTTGATTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.44, C:0.02, G:0.13, T:0.41
Consensus pattern (27 bp):
ATGAATAACTATGAATAAGTTTTTATA
Found at i:82219380 original size:241 final size:241
Alignment explanation
Indices: 82218957--82219628 Score: 1290
Period size: 241 Copynumber: 2.8 Consensus size: 241
82218947 ATGAATTAAT
*
82218957 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAAGCTT
1 TTTATTACCATATAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAAGCTT
*
82219022 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGATGGAAACCTGACGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
82219087 CCGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CCGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
82219152 AAAAATACTTGAAAAAAATTCTATCCAACTCATTTACTATTGAATA
196 AAAAATACTTGAAAAAAATTCTATCCAACTCATTTACTATTGAATA
*
82219198 TTTATTACCATATAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAAGTTT
1 TTTATTACCATATAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAAGCTT
*
82219263 ATTGTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
82219328 CCGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CCGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
82219393 AAAAATACTTGAAAAAAATTCTATCCAACTCATTTACTATTGAATA
196 AAAAATACTTGAAAAAAATTCTATCCAACTCATTTACTATTGAATA
82219439 TTTATTACCATATAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAAGCTT
1 TTTATTACCATATAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAAGCTT
82219504 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
**
82219569 CTATAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAA
131 CCGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAA
82219629 TTTATAACTA
Statistics
Matches: 423, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
241 423 1.00
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.32
Consensus pattern (241 bp):
TTTATTACCATATAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAAGCTT
ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
CCGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
AAAAATACTTGAAAAAAATTCTATCCAACTCATTTACTATTGAATA
Found at i:82219695 original size:9 final size:9
Alignment explanation
Indices: 82219672--82219784 Score: 109
Period size: 9 Copynumber: 12.2 Consensus size: 9
82219662 ATTGATCATT
*
82219672 ACTTAAATA
1 ACTTACATA
*
82219681 AATTACATA
1 ACTTACATA
82219690 ACTTACATA
1 ACTTACATA
* *
82219699 ACTCATATA
1 ACTTACATA
82219708 ACTTACATA
1 ACTTACATA
*
82219717 ATTTACATAACA
1 ACTTACAT---A
82219729 ACTTACATA
1 ACTTACATA
*
82219738 ACTCACATA
1 ACTTACATA
82219747 ACTTACATA
1 ACTTACATA
*
82219756 ATTTACATA
1 ACTTACATA
* *
82219765 ACTCACATT
1 ACTTACATA
*
82219774 ACGTACATA
1 ACTTACATA
82219783 AC
1 AC
82219785 AACTTACATA
Statistics
Matches: 83, Mismatches: 18, Indels: 6
0.78 0.17 0.06
Matches are distributed among these distances:
9 75 0.90
12 8 0.10
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.32
Consensus pattern (9 bp):
ACTTACATA
Found at i:82219741 original size:39 final size:39
Alignment explanation
Indices: 82219689--82219766 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
82219679 TAAATTACAT
*
82219689 AACTTACATAACTCATATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
82219728 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
82219767 TCACATTACG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAAC
Found at i:82219766 original size:57 final size:57
Alignment explanation
Indices: 82219685--82219796 Score: 161
Period size: 57 Copynumber: 2.0 Consensus size: 57
82219675 TAAATAAATT
* * **
82219685 ACATAACTTACATAACTCATATAACTTACATAATTTACATAACAACTTACATAACTC
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
* * *
82219742 ACATAACTTACATAATTTACATAACTCACATTACGTACATAACAACTTACATAAC
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAAC
82219797 CTAACTAATA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
57 48 1.00
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.30
Consensus pattern (57 bp):
ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
Found at i:82232444 original size:43 final size:43
Alignment explanation
Indices: 82232419--82232669 Score: 403
Period size: 43 Copynumber: 5.8 Consensus size: 43
82232409 GTAGAAAAAG
* *
82232419 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTTCTACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* * *
82232462 CGCCGCTTAAAGCCTTGACCTTTAGCGGCGCTTTTCCAAAAAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCC-CACAAA
* * *
82232506 TGCCGCTAAAAGCCTAGACCTTTAGCGGCGCTTCTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
82232549 CGCCGCTAAAAGCCTAGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
82232592 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
82232635 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTT
82232670 TTTCCAATAA
Statistics
Matches: 193, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
43 156 0.81
44 37 0.19
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (43 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
Found at i:82232604 original size:130 final size:129
Alignment explanation
Indices: 82232419--82232664 Score: 411
Period size: 130 Copynumber: 1.9 Consensus size: 129
82232409 GTAGAAAAAG
* * * *
82232419 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTTCTACAAACGCCGCTTAAAGCCTTGACCTT
1 CGCCGCTAAAAGCCTAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTT
*
82232484 TAGCGGCGCTTTTCCAAAAAAATGCCGCTAAAAGCCTAGACCTTTAGCGGCGCTTCTCCCACAAA
66 TAGCGGCGCTTTTCC-AAAAAACGCCGCTAAAAGCCTAGACCTTTAGCGGCGCTTCTCCCACAAA
82232549 CGCCGCTAAAAGCCTAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTT
1 CGCCGCTAAAAGCCTAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTT
* * *
82232614 TAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCG
66 TAGCGGCGCTTTTCCAAAAAACGCCGCTAAAAGCCTAGACCTTTAGCGGCG
82232665 TTTTTTTTCC
Statistics
Matches: 108, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
129 32 0.30
130 76 0.70
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (129 bp):
CGCCGCTAAAAGCCTAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTT
TAGCGGCGCTTTTCCAAAAAACGCCGCTAAAAGCCTAGACCTTTAGCGGCGCTTCTCCCACAAA
Found at i:82232634 original size:86 final size:87
Alignment explanation
Indices: 82232413--82232669 Score: 408
Period size: 87 Copynumber: 3.0 Consensus size: 87
82232403 GCGTTTGTAG
* * * *
82232413 AAAAAGCGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTTCTACAAACGCCGCTTAAAGCCTT
1 AAAAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTT
82232478 GACCTTTAGCGGCGCTTTTCCA
66 GACCTTTAGCGGCGCTTTTCCA
* * * *
82232500 AAAAAATGCCGCTAAAAGCCTAGACCTTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAAGCCTA
1 AAAAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTT
82232565 GACCTTTAGCGGCGCTTTTCC-
66 GACCTTTAGCGGCGCTTTTCCA
* *
82232586 CACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTT
1 AAAAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTT
*
82232651 GACCTTTAGCGGCGTTTTT
66 GACCTTTAGCGGCGCTTTT
82232670 TTTCCAATAA
Statistics
Matches: 155, Mismatches: 15, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
86 77 0.50
87 78 0.50
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (87 bp):
AAAAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTT
GACCTTTAGCGGCGCTTTTCCA
Found at i:82248113 original size:26 final size:26
Alignment explanation
Indices: 82248082--82248189 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
82248072 TGAAATGCCC
*
82248082 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
82248108 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
82248134 ATCATGAAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
82248160 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
82248186 ATCA
1 ATCA
82248190 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:82254815 original size:21 final size:20
Alignment explanation
Indices: 82254786--82254831 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
82254776 CGAAATGCAA
82254786 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
82254807 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
82254827 T-AACC
1 TCAACC
82254832 ATTCTAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:82260833 original size:17 final size:17
Alignment explanation
Indices: 82260805--82260845 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
82260795 ACCTTTTTAA
*
82260805 AAAAATTATAAAATATAT
1 AAAAA-TATAAAAAATAT
*
82260823 AGAAATATAAAAAATAT
1 AAAAATATAAAAAATAT
82260840 AAAAAT
1 AAAAAT
82260846 TTTATAAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (17 bp):
AAAAATATAAAAAATAT
Found at i:82260844 original size:37 final size:39
Alignment explanation
Indices: 82260802--82260881 Score: 94
Period size: 37 Copynumber: 2.1 Consensus size: 39
82260792 AAAACCTTTT
82260802 TAAAAAAATTATAAAAT-ATATAG-AAA-TATAAAAAATA
1 TAAAAAAATTATAAAATCAT-TAGAAAATTATAAAAAATA
** * *
82260839 TAAAAATTTTATAAATTCGTTAGAAAATTATAAAAAATA
1 TAAAAAAATTATAAAATCATTAGAAAATTATAAAAAATA
82260878 TAAA
1 TAAA
82260882 TTTTGTAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
37 17 0.47
38 4 0.11
39 15 0.42
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (39 bp):
TAAAAAAATTATAAAATCATTAGAAAATTATAAAAAATA
Found at i:82260874 original size:9 final size:9
Alignment explanation
Indices: 82260805--82260909 Score: 52
Period size: 9 Copynumber: 11.1 Consensus size: 9
82260795 ACCTTTTTAA
82260805 AAAAATTAT
1 AAAAATTAT
82260814 -AAAATATAT
1 AAAAAT-TAT
*
82260823 AGAAA-TAT
1 AAAAATTAT
*
82260831 AAAAAATAT
1 AAAAATTAT
*
82260840 AAAAATTTT
1 AAAAATTAT
* *
82260849 ATAAATTCGTT
1 AAAAATT--AT
82260860 AGAAAATTAT
1 A-AAAATTAT
*
82260870 AAAAAATAT
1 AAAAATTAT
** *
82260879 AAATTTTGTAA
1 AAA-AAT-TAT
82260890 AAAGAATTAT
1 AAA-AATTAT
82260900 AAAAATTAT
1 AAAAATTAT
82260909 A
1 A
82260910 GTACCAAAAG
Statistics
Matches: 72, Mismatches: 16, Indels: 16
0.69 0.15 0.15
Matches are distributed among these distances:
8 12 0.17
9 36 0.50
10 10 0.14
11 9 0.12
12 5 0.07
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (9 bp):
AAAAATTAT
Found at i:82260960 original size:11 final size:10
Alignment explanation
Indices: 82260934--82260959 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
82260924 TTTTTTTATA
82260934 ATTTTTATTG
1 ATTTTTATTG
82260944 ATTTTTATTG
1 ATTTTTATTG
82260954 ATTTTT
1 ATTTTT
82260960 TTTATCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.08, T:0.73
Consensus pattern (10 bp):
ATTTTTATTG
Found at i:82261125 original size:18 final size:18
Alignment explanation
Indices: 82261102--82261154 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
82261092 AAAAAATTCT
82261102 AATTTATATTTTTATTAA
1 AATTTATATTTTTATTAA
*
82261120 AATTTAATAATTTTT-CTAA
1 AATTT-AT-ATTTTTATTAA
*
82261139 AATTTAT-TATTTATTA
1 AATTTATATTTTTATTA
82261155 TATTTTCTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
16 4 0.14
17 2 0.07
18 7 0.24
19 10 0.34
20 6 0.21
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (18 bp):
AATTTATATTTTTATTAA
Found at i:82266119 original size:2 final size:2
Alignment explanation
Indices: 82266112--82266137 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
82266102 AATATGAGAA
82266112 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
82266138 CATTTAGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:82271480 original size:29 final size:28
Alignment explanation
Indices: 82271448--82271547 Score: 94
Period size: 29 Copynumber: 3.4 Consensus size: 28
82271438 GGGACGAGAT
* *
82271448 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACT-AGTGTGCGAGCTTGGAATATA
* *
82271477 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACT-AGTGTGCGAGCTTGGAATATA
* *
82271506 TGGCACTATGTGTGCGGGCTT-GAATCACA
1 TGGCACTA-GTGTGCGAGCTTGGAAT-ATA
82271535 TGGCACTAAGTGT
1 TGGCACT-AGTGT
82271548 ACGTGATTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
28 4 0.07
29 54 0.92
30 1 0.02
ACGTcount: A:0.22, C:0.16, G:0.32, T:0.30
Consensus pattern (28 bp):
TGGCACTAGTGTGCGAGCTTGGAATATA
Found at i:82280871 original size:17 final size:18
Alignment explanation
Indices: 82280851--82280884 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
82280841 AAAATGGAAA
82280851 TGAAAAGC-TAATGTTTT
1 TGAAAAGCTTAATGTTTT
*
82280868 TGAAAATCTTAATGTTT
1 TGAAAAGCTTAATGTTT
82280885 GAAATTATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.35, C:0.06, G:0.15, T:0.44
Consensus pattern (18 bp):
TGAAAAGCTTAATGTTTT
Found at i:82282934 original size:57 final size:58
Alignment explanation
Indices: 82282859--82283134 Score: 178
Period size: 55 Copynumber: 4.9 Consensus size: 58
82282849 AAGGCGTTCC
* * * * *
82282859 TTTTAACAAAGTTTGCCAC-AAGGCATTCATTTAACTGATATAGCCACAAAGGTATGT
1 TTTTAACAAAGATAGCCACAAAGGCATCCATTTAACAGAGATAGCCACAAAGGTATGT
* * *
82282916 TTTTAACAGAGATAGCCACAAAGGCATCCTTTTAACAGAGATAGCCACAAAGGCT-TCT
1 TTTTAACAAAGATAGCCACAAAGGCATCCATTTAACAGAGATAGCCACAAAGG-TATGT
* ** * * * * * * *
82282974 TTATAGTAGAGATCGCCACAAAGGCTTCCTTTTAACAAAGATAGCCACAAAGGCAT-C
1 TTTTAACAAAGATAGCCACAAAGGCATCCATTTAACAGAGATAGCCACAAAGGTATGT
* * * * * *
82283031 CTTT--CAGAGATAGCCATAAAGGCTTCC-TTATAACAAAGATAACCACAAAGG--TGT
1 TTTTAACAAAGATAGCCACAAAGGCATCCATT-TAACAGAGATAGCCACAAAGGTATGT
* * * * *
82283085 CCTTT--CAGAGAGAGCCACAAAGGCTTCC-TTATAATAGAGATAGCCACAAA
1 -TTTTAACAAAGATAGCCACAAAGGCATCCATT-TAACAGAGATAGCCACAAA
82283135 TGCTCACTTA
Statistics
Matches: 185, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
53 1 0.01
54 2 0.01
55 84 0.45
57 18 0.10
58 79 0.43
59 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (58 bp):
TTTTAACAAAGATAGCCACAAAGGCATCCATTTAACAGAGATAGCCACAAAGGTATGT
Found at i:82282940 original size:87 final size:87
Alignment explanation
Indices: 82282856--82283134 Score: 249
Period size: 84 Copynumber: 3.3 Consensus size: 87
82282846 ACGAAGGCGT
* * * **
82282856 TCCTTTTAACAAAGTTTGCCAC-AAGGCATTCATTTA-ACT-GATATAGCCACAAAGG-TATGTT
1 TCCTTTTAACAAAGATAGCCACAAAGGC-TTC-TTTATACTAGAGATAGCCACAAAGGCT-TCCT
*
82282917 TTTAACAGAGATAGCCACAAAGGCA
63 TTTAACAAAGATAGCCACAAAGGCA
* * *
82282942 TCCTTTTAACAGAGATAGCCACAAAGGCTTCTTTATAGTAGAGATCGCCACAAAGGCTTCCTTTT
1 TCCTTTTAACAAAGATAGCCACAAAGGCTTCTTTATACTAGAGATAGCCACAAAGGCTTCCTTTT
82283007 AACAAAGATAGCCACAAAGGCA
66 AACAAAGATAGCCACAAAGGCA
* * * * *
82283029 TCC-TTT--CAGAGATAGCCATAAAGGCTTCCTTATAAC-AAAGATAACCACAAAGG-TGTCC-T
1 TCCTTTTAACAAAGATAGCCACAAAGGCTTCTTTAT-ACTAGAGATAGCCACAAAGGCT-TCCTT
* * *
82283088 TT--CAGAGAGAGCCACAAAGGCT
64 TTAACAAAGATAGCCACAAAGGCA
* * *
82283110 TCCTTATAATAGAGATAGCCACAAA
1 TCCTTTTAACAAAGATAGCCACAAA
82283135 TGCTCACTTA
Statistics
Matches: 163, Mismatches: 21, Indels: 20
0.80 0.10 0.10
Matches are distributed among these distances:
81 20 0.12
82 2 0.01
83 4 0.02
84 56 0.34
85 5 0.03
86 27 0.17
87 48 0.29
88 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.25
Consensus pattern (87 bp):
TCCTTTTAACAAAGATAGCCACAAAGGCTTCTTTATACTAGAGATAGCCACAAAGGCTTCCTTTT
AACAAAGATAGCCACAAAGGCA
Found at i:82282950 original size:58 final size:56
Alignment explanation
Indices: 82282888--82283134 Score: 241
Period size: 55 Copynumber: 4.4 Consensus size: 56
82282878 AAGGCATTCA
* * *
82282888 TTTAACTGATATAGCCACAAAGGTATGTTTTTAACAGAGATAGCCACAAAGGCATCCT
1 TTTAACAGAGATAGCCACAAAGGT-TGTTTTT-ACAGAGATAGCCACAAAGGCTTCCT
* * * *
82282946 TTTAACAGAGATAGCCACAAAGGCTTCTTTATAGTAGAGATCGCCACAAAGGCTTCCT
1 TTTAACAGAGATAGCCACAAAGG-TTGTTTTTA-CAGAGATAGCCACAAAGGCTTCCT
* * ** *
82283004 TTTAACAAAGATAGCCACAAAGGCAT-CCTTT-CAGAGATAGCCATAAAGGCTTCCT
1 TTTAACAGAGATAGCCACAAAGG-TTGTTTTTACAGAGATAGCCACAAAGGCTTCCT
* * * * *
82283059 TATAACAAAGATAACCACAAAGG-TGTCCTTT-CAGAGAGAGCCACAAAGGCTTCCT
1 TTTAACAGAGATAGCCACAAAGGTTGT-TTTTACAGAGATAGCCACAAAGGCTTCCT
* *
82283114 TATAATAGAGATAGCCACAAA
1 TTTAACAGAGATAGCCACAAA
82283135 TGCTCACTTA
Statistics
Matches: 162, Mismatches: 23, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
53 1 0.01
55 86 0.53
57 3 0.02
58 71 0.44
59 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.24
Consensus pattern (56 bp):
TTTAACAGAGATAGCCACAAAGGTTGTTTTTACAGAGATAGCCACAAAGGCTTCCT
Found at i:82283065 original size:55 final size:55
Alignment explanation
Indices: 82282922--82283134 Score: 264
Period size: 55 Copynumber: 3.8 Consensus size: 55
82282912 ATGTTTTTAA
* * * * *
82282922 CAGAGATAGCCACAAAGGCATCCTTTTAACAGAGATAGCCACAAAGGCTTCTTTAT
1 CAGAGATAGCCACAAAGGCTTCCTTATAACAAAGATAGCCACAAAGGCATCCTT-T
* * *
82282978 AGTAGAGATCGCCACAAAGGCTTCCTTTTAACAAAGATAGCCACAAAGGCATCCTTT
1 --CAGAGATAGCCACAAAGGCTTCCTTATAACAAAGATAGCCACAAAGGCATCCTTT
* * **
82283035 CAGAGATAGCCATAAAGGCTTCCTTATAACAAAGATAACCACAAAGGTGTCCTTT
1 CAGAGATAGCCACAAAGGCTTCCTTATAACAAAGATAGCCACAAAGGCATCCTTT
* * *
82283090 CAGAGAGAGCCACAAAGGCTTCCTTATAATAGAGATAGCCACAAA
1 CAGAGATAGCCACAAAGGCTTCCTTATAACAAAGATAGCCACAAA
82283135 TGCTCACTTA
Statistics
Matches: 137, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
55 88 0.64
57 1 0.01
58 48 0.35
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.22
Consensus pattern (55 bp):
CAGAGATAGCCACAAAGGCTTCCTTATAACAAAGATAGCCACAAAGGCATCCTTT
Found at i:82283146 original size:29 final size:29
Alignment explanation
Indices: 82282843--82283134 Score: 253
Period size: 29 Copynumber: 10.3 Consensus size: 29
82282833 TCAGAGTTTT
* * * * *
82282843 GCCACGAAGGCGTTCCTTTTAACAAAGTTT
1 GCCACAAAGGC-TTCCTTATAACAGAGATA
* * *
82282873 GCCAC-AAGGCATTCATT-TAACTGATATA
1 GCCACAAAGGC-TTCCTTATAACAGAGATA
** *
82282901 GCCACAAAGG-TATGTTTTTAACAGAGATA
1 GCCACAAAGGCT-TCCTTATAACAGAGATA
* *
82282930 GCCACAAAGGCATCCTTTTAACAGAGATA
1 GCCACAAAGGCTTCCTTATAACAGAGATA
* ** *
82282959 GCCACAAAGGCTTCTTTATAGTAGAGATC
1 GCCACAAAGGCTTCCTTATAACAGAGATA
* *
82282988 GCCACAAAGGCTTCCTTTTAACAAAGATA
1 GCCACAAAGGCTTCCTTATAACAGAGATA
*
82283017 GCCACAAAGGCATCCTT-T--CAGAGATA
1 GCCACAAAGGCTTCCTTATAACAGAGATA
* *
82283043 GCCATAAAGGCTTCCTTATAACAAAGATA
1 GCCACAAAGGCTTCCTTATAACAGAGATA
* *
82283072 ACCACAAAGG-TGTCCTT-T--CAGAGAGA
1 GCCACAAAGGCT-TCCTTATAACAGAGATA
*
82283098 GCCACAAAGGCTTCCTTATAATAGAGATA
1 GCCACAAAGGCTTCCTTATAACAGAGATA
82283127 GCCACAAA
1 GCCACAAA
82283135 TGCTCACTTA
Statistics
Matches: 212, Mismatches: 38, Indels: 25
0.77 0.14 0.09
Matches are distributed among these distances:
26 42 0.20
27 4 0.02
28 17 0.08
29 144 0.68
30 5 0.02
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (29 bp):
GCCACAAAGGCTTCCTTATAACAGAGATA
Found at i:82283146 original size:84 final size:85
Alignment explanation
Indices: 82282916--82283134 Score: 259
Period size: 84 Copynumber: 2.6 Consensus size: 85
82282906 AAAGGTATGT
* **
82282916 TTTTAACAGAGATAGCCACAAAGGCATCCTTTTAACAGAGATAGCCACAAAGGCTTCTTTATAGT
1 TTTT-ACAGAGATAGCCACAAAGGCATCC-TTTAACAGAGATAGCCACAAAGGCTTCCTTATAAC
* **
82282981 AGAGATCGCCACAAAGGCTTCC
64 AAAGATAACCACAAAGGCTTCC
* *
82283003 TTTTAACAAAGATAGCCACAAAGGCATCCTTT--CAGAGATAGCCATAAAGGCTTCCTTATAACA
1 TTTT-ACAGAGATAGCCACAAAGGCATCCTTTAACAGAGATAGCCACAAAGGCTTCCTTATAACA
82283066 AAGATAACCACAAAGG-TGTCC
65 AAGATAACCACAAAGGCT-TCC
* * *
82283087 -TTT-CAGAGAGAGCCACAAAGGCTTCCTTATAATAGAGATAGCCACAAA
1 TTTTACAGAGATAGCCACAAAGGCATCCTT-TAACAGAGATAGCCACAAA
82283135 TGCTCACTTA
Statistics
Matches: 115, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
81 22 0.19
82 1 0.01
83 4 0.03
84 57 0.50
86 3 0.03
87 28 0.24
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.23
Consensus pattern (85 bp):
TTTTACAGAGATAGCCACAAAGGCATCCTTTAACAGAGATAGCCACAAAGGCTTCCTTATAACAA
AGATAACCACAAAGGCTTCC
Found at i:82284494 original size:28 final size:27
Alignment explanation
Indices: 82284461--82284516 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
82284451 TTAGAATACT
*
82284461 TTAGTTTACTAAAATTACCGAAATACCC
1 TTAGTTT-CTAAAAATACCGAAATACCC
* *
82284489 TTAGTTTGTAAAAATACTGAAATACCC
1 TTAGTTTCTAAAAATACCGAAATACCC
82284516 T
1 T
82284517 CGATTTGTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 18 0.72
28 7 0.28
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (27 bp):
TTAGTTTCTAAAAATACCGAAATACCC
Found at i:82284500 original size:27 final size:28
Alignment explanation
Indices: 82284470--82284824 Score: 114
Period size: 27 Copynumber: 13.1 Consensus size: 28
82284460 TTTAGTTTAC
*
82284470 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATACCCTTAGATTTG
* *
82284497 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACTGAAATACCCTTAGATTTG
* * *
82284524 TAAATTTACTGAAATA-CCTTCGACTTG
1 TAAAATTACTGAAATACCCTTAGATTTG
** *
82284551 TAAAATTACT-AAAGTACCC-CCGATTTA
1 TAAAATTACTGAAA-TACCCTTAGATTTG
* * *** * *
82284578 CAGAATTA-TCGTTTTACCCCTA-ATTTA
1 TAAAATTACT-GAAATACCCTTAGATTTG
* * *** *
82284605 CATAATTACTGTTTTACCCTT-GATTTA
1 TAAAATTACTGAAATACCCTTAGATTTG
* * ** * *
82284632 CAGAATTACT-ATTTTACCC-TCGATTTA
1 TAAAATTACTGA-AATACCCTTAGATTTG
* * *
82284659 CAAAATTACTAAAATACCCTT-GGTTTG
1 TAAAATTACTGAAATACCCTTAGATTTG
* * * *
82284686 TGAAATTACCGAAAAACCCTCA-ATTTG
1 TAAAATTACTGAAATACCCTTAGATTTG
** * *
82284713 TAAAATTACCAAAATACCCCTA-ATTTA
1 TAAAATTACTGAAATACCCTTAGATTTG
* * * *
82284740 CAAAGTTACAGAAATACCCTT-GACTTTC
1 TAAAATTACTGAAATACCCTTAGA-TTTG
* * *
82284768 TAAAAATTA-TAGAAATACCATT-GGTTTA
1 T-AAAATTACT-GAAATACCCTTAGATTTG
*
82284796 CAAAATTACTGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATACCCTTAGATTTG
82284823 TA
1 TA
82284825 GATTTACCAA
Statistics
Matches: 253, Mismatches: 55, Indels: 40
0.73 0.16 0.11
Matches are distributed among these distances:
26 9 0.04
27 214 0.85
28 13 0.05
29 17 0.07
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.34
Consensus pattern (28 bp):
TAAAATTACTGAAATACCCTTAGATTTG
Found at i:82284539 original size:54 final size:54
Alignment explanation
Indices: 82284470--82284576 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
82284460 TTTAGTTTAC
* *
82284470 TAAAATTACCGAAATACCCTTAG-TTTGTAAAAATACTGAAA-TACCCTCGATTTG
1 TAAAATTACCGAAATA-CCTTAGACTTGTAAAAATACT-AAAGTACCCCCGATTTG
* * * *
82284524 TAAATTTACTGAAATACCTTCGACTTGTAAAATTACTAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCTTAGACTTGTAAAAATACTAAAGTACCCCCGATTT
82284577 ACAGAATTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (54 bp):
TAAAATTACCGAAATACCTTAGACTTGTAAAAATACTAAAGTACCCCCGATTTG
Found at i:82284678 original size:54 final size:54
Alignment explanation
Indices: 82284552--82284680 Score: 136
Period size: 54 Copynumber: 2.4 Consensus size: 54
82284542 TTCGACTTGT
* ** *
82284552 AAAATTACTAAAGTACCCCCGATTTACAGAATTATCGTTTTACCCCTAATTTAC
1 AAAATTACTAAAATACCCTTGATTTACAGAATTATCATTTTACCCCTAATTTAC
* **** *
82284606 ATAATTACTGTTTTACCCTTGATTTACAGAATTA-CTATTTTA-CCCTCGATTTAC
1 AAAATTACTAAAATACCCTTGATTTACAGAATTATC-ATTTTACCCCT-AATTTAC
82284660 AAAATTACTAAAATACCCTTG
1 AAAATTACTAAAATACCCTTG
82284681 GTTTGTGAAA
Statistics
Matches: 59, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
53 5 0.08
54 54 0.92
ACGTcount: A:0.34, C:0.22, G:0.07, T:0.37
Consensus pattern (54 bp):
AAAATTACTAAAATACCCTTGATTTACAGAATTATCATTTTACCCCTAATTTAC
Found at i:82284933 original size:27 final size:27
Alignment explanation
Indices: 82284876--82284939 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
82284866 TCCCTATTAG
* *
82284876 GTAAAAAGACCGTAAAGCCCCTGTAGG
1 GTAAAATGACCGTAAAGCCCCTGTAGA
* *
82284903 GTAAAGTGACCGTAATA-CCCCTGTATA
1 GTAAAATGACCGTAA-AGCCCCTGTAGA
82284930 GTAAAATGAC
1 GTAAAATGAC
82284940 GAATATGCCC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (27 bp):
GTAAAATGACCGTAAAGCCCCTGTAGA
Found at i:82286204 original size:20 final size:20
Alignment explanation
Indices: 82286179--82286237 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
82286169 TAAATATGGT
82286179 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
82286199 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
82286219 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
82286238 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:82286315 original size:24 final size:24
Alignment explanation
Indices: 82286288--82286454 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
82286278 GAGGAAGTGA
82286288 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
82286312 AAAAGGGCTTATGCCTCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
82286336 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
82286360 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
82286383 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
82286407 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
82286431 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
82286455 ATGATAAAGC
Statistics
Matches: 133, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
23 23 0.17
24 99 0.74
25 11 0.08
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:82286412 original size:71 final size:71
Alignment explanation
Indices: 82286288--82286455 Score: 248
Period size: 71 Copynumber: 2.3 Consensus size: 71
82286278 GAGGAAGTGA
*
82286288 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCTCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
82286353 AGTTATC
65 AGTTATC
** *
82286360 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
*
82286425 GTTATT
66 GTTATC
*
82286431 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
82286456 TGATAAAGCA
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
71 53 0.60
72 35 0.40
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTATC
Found at i:82286681 original size:31 final size:31
Alignment explanation
Indices: 82286646--82286740 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
82286636 CATTTACAGT
82286646 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
82286677 AAAGGCTTCGGCCTAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
82286708 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
82286739 AA
1 AA
82286741 TATGAAAAGG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:82292839 original size:65 final size:65
Alignment explanation
Indices: 82292759--82292888 Score: 260
Period size: 65 Copynumber: 2.0 Consensus size: 65
82292749 TCCTTATATC
82292759 CATCATATTAATGCCATTTTCATAATTAAAATCATATTCCATTATATATCATTACACTTCATACT
1 CATCATATTAATGCCATTTTCATAATTAAAATCATATTCCATTATATATCATTACACTTCATACT
82292824 CATCATATTAATGCCATTTTCATAATTAAAATCATATTCCATTATATATCATTACACTTCATACT
1 CATCATATTAATGCCATTTTCATAATTAAAATCATATTCCATTATATATCATTACACTTCATACT
82292889 TTGAATATAT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.37, C:0.20, G:0.02, T:0.42
Consensus pattern (65 bp):
CATCATATTAATGCCATTTTCATAATTAAAATCATATTCCATTATATATCATTACACTTCATACT
Found at i:82294505 original size:26 final size:26
Alignment explanation
Indices: 82294476--82294535 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
82294466 TCCCTTTGAA
* * *
82294476 TCATTCGATATTTCGCACACTAAGTG
1 TCATTCAATATCTCACACACTAAGTG
82294502 TCATTCTCAATATCTCACACACTAAGTG
1 TCA-T-TCAATATCTCACACACTAAGTG
*
82294530 CCATTC
1 TCATTC
82294536 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.33
Consensus pattern (26 bp):
TCATTCAATATCTCACACACTAAGTG
Found at i:82294551 original size:28 final size:28
Alignment explanation
Indices: 82294483--82294561 Score: 113
Period size: 28 Copynumber: 2.8 Consensus size: 28
82294473 GAATCATTCG
*
82294483 ATATTTCGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
82294511 ATATCTCACACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
82294539 ATATTTCGTACACTGAGTGCCAT
1 ATATTTCGCACACTAAGTGCCAT
82294562 ATTTGATTGC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:82298717 original size:11 final size:10
Alignment explanation
Indices: 82298685--82298740 Score: 62
Period size: 11 Copynumber: 5.6 Consensus size: 10
82298675 CATGAGATTT
82298685 TGATAT-ACA
1 TGATATGACA
*
82298694 TGATTTGACA
1 TGATATGACA
82298704 TGATATGCACA
1 TGATATG-ACA
*
82298715 TGATATG-TA
1 TGATATGACA
82298724 TGATATGCACA
1 TGATATG-ACA
82298735 TGATAT
1 TGATAT
82298741 ATTCATATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
9 13 0.33
10 9 0.23
11 17 0.44
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36
Consensus pattern (10 bp):
TGATATGACA
Found at i:82298728 original size:20 final size:20
Alignment explanation
Indices: 82298703--82298740 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
82298693 ATGATTTGAC
82298703 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
82298723 ATGATATGCACATGATAT
1 ATGATATGCACATGATAT
82298741 ATTCATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.34
Consensus pattern (20 bp):
ATGATATGCACATGATATGT
Found at i:82298819 original size:25 final size:25
Alignment explanation
Indices: 82298786--82298855 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
82298776 GAGGAAGTGA
*
82298786 AAAAGGGCTTTTCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
82298811 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
82298836 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
82298856 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:82299153 original size:31 final size:30
Alignment explanation
Indices: 82299074--82299174 Score: 184
Period size: 30 Copynumber: 3.3 Consensus size: 30
82299064 AGCTTACAGT
*
82299074 AAAGGCTTCGGCCAGGGATATGATTTATGA
1 AAAGGCTTCGGCCAGTGATATGATTTATGA
82299104 AAAGGCTTCGGCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCAGTGATATGATTTATGA
82299134 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGG-CCAGTGATATGATTTATGA
82299165 AAAGGCTTCG
1 AAAGGCTTCG
82299175 ACCCAGTATA
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
30 40 0.58
31 29 0.42
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.28
Consensus pattern (30 bp):
AAAGGCTTCGGCCAGTGATATGATTTATGA
Found at i:82299180 original size:31 final size:30
Alignment explanation
Indices: 82299074--82299186 Score: 174
Period size: 30 Copynumber: 3.7 Consensus size: 30
82299064 AGCTTACAGT
* *
82299074 AAAGGCTTCGGCCAGGGATATGATTTATGA
1 AAAGGCTTCGCCCAGTGATATGATTTATGA
*
82299104 AAAGGCTTCGGCCAGTGATATGATTTATGA
1 AAAGGCTTCGCCCAGTGATATGATTTATGA
82299134 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTC-GCCCAGTGATATGATTTATGA
82299165 AAAGGCTTCGACCCAGT-ATATG
1 AAAGGCTTCG-CCCAGTGATATG
82299187 TCGAGACTGA
Statistics
Matches: 79, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
30 44 0.56
31 35 0.44
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (30 bp):
AAAGGCTTCGCCCAGTGATATGATTTATGA
Found at i:82307260 original size:27 final size:27
Alignment explanation
Indices: 82307222--82307281 Score: 120
Period size: 27 Copynumber: 2.2 Consensus size: 27
82307212 ATCTGAAGCA
82307222 ACTTTCAAGCAATCACGAATTACTTTT
1 ACTTTCAAGCAATCACGAATTACTTTT
82307249 ACTTTCAAGCAATCACGAATTACTTTT
1 ACTTTCAAGCAATCACGAATTACTTTT
82307276 ACTTTC
1 ACTTTC
82307282 TCTTCGATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (27 bp):
ACTTTCAAGCAATCACGAATTACTTTT
Found at i:82309508 original size:46 final size:45
Alignment explanation
Indices: 82309441--82309615 Score: 147
Period size: 46 Copynumber: 3.8 Consensus size: 45
82309431 TGTAACCCGC
82309441 CCATAAGTGAACTC-AGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGA-ACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * * *
82309487 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGAATGCCTAG-TT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCG--GGCTTCGCAT
* *** * * * **
82309533 ACATCTCTCGAACCCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGT-GAACTCGAACTCAACTCAACGAGCTCGGGC-TTCGCAT
* *
82309580 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGG
82309616 ATGCCCAAAT
Statistics
Matches: 101, Mismatches: 22, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
45 1 0.01
46 66 0.65
47 32 0.32
48 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:82315409 original size:68 final size:68
Alignment explanation
Indices: 82315242--82315417 Score: 184
Period size: 68 Copynumber: 2.6 Consensus size: 68
82315232 CTCTACCACC
* * * *
82315242 CATGTGACCTAGC--CA-ATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGTGACCTAGCTACACATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAAT
82315304 CACA
65 CACA
** * *
82315308 CATGTGACCTAGCTACATTTATCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGT
1 CATGTGACCTAGCTACACATATATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGA
82315370 ATCACA
63 ATCACA
82315376 CATGTGACCTAGCTACTACATAGTATCTCGTAGCTCTCTTGT
1 CATGTGACCTAGCTAC-ACATA-TATCTCGTAGCTCTCTTGT
82315418 ACACATGATG
Statistics
Matches: 92, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
66 13 0.14
68 39 0.42
69 8 0.09
70 6 0.07
71 26 0.28
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (68 bp):
CATGTGACCTAGCTACACATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATC
ACA
Found at i:82328315 original size:2 final size:2
Alignment explanation
Indices: 82328310--82328342 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
82328300 ATATAATCGA
82328310 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
82328343 CTTATATGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:82328524 original size:16 final size:16
Alignment explanation
Indices: 82328503--82328533 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82328493 ATTTGTTTTC
*
82328503 ATTTGCATCATATATA
1 ATTTGCATCAAATATA
82328519 ATTTGCATCAAATAT
1 ATTTGCATCAAATAT
82328534 CAAATAACCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.13, G:0.06, T:0.42
Consensus pattern (16 bp):
ATTTGCATCAAATATA
Found at i:82328812 original size:56 final size:56
Alignment explanation
Indices: 82328750--82328940 Score: 319
Period size: 56 Copynumber: 3.4 Consensus size: 56
82328740 CCCAGACAGC
* * * * *
82328750 GTCTTACTTGCACACACATATCGGAGTCACATATCGATGCCAATGTATTAAATGTG
1 GTCTTACTCGCACACATATATCGGAGTCACATATCGCTGCCAACGTATTAAACGTG
*
82328806 GTCTTACTCGCACACATATATCAGAGTCACATATCGCTGCCAACGTATTAAACGTG
1 GTCTTACTCGCACACATATATCGGAGTCACATATCGCTGCCAACGTATTAAACGTG
*
82328862 GTCTTACTCGCACACATATATCGAAGTCACATATCGCTGCCAACGTATTAAACGTG
1 GTCTTACTCGCACACATATATCGGAGTCACATATCGCTGCCAACGTATTAAACGTG
82328918 GTCTTACTCGCACACATATATCG
1 GTCTTACTCGCACACATATATCG
82328941 ATGCCATGGT
Statistics
Matches: 127, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 127 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (56 bp):
GTCTTACTCGCACACATATATCGGAGTCACATATCGCTGCCAACGTATTAAACGTG
Found at i:82331330 original size:3 final size:3
Alignment explanation
Indices: 82331322--82331359 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
82331312 GCTTTATGTT
82331322 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
82331360 TTGAATATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:82336630 original size:42 final size:42
Alignment explanation
Indices: 82336572--82336692 Score: 129
Period size: 43 Copynumber: 2.9 Consensus size: 42
82336562 TAGGGTTACT
** *
82336572 GAGATTATGTGTAAGACCATATCTGGGATATGGCATCGATAT
1 GAGATTACATGTAAGACCATATCTGGGATATGGCATCGATAC
* * *
82336614 GAGACTT-CATGTAAGACCATAGCT-GGACTATTAGCATCGTTAC
1 GAGA-TTACATGTAAGACCATATCTGGGA-TA-TGGCATCGATAC
* *
82336657 GAGATTACATGTAAAACCATATCTGAGATATGGCAT
1 GAGATTACATGTAAGACCATATCTGGGATATGGCAT
82336693 TGTTACGGTA
Statistics
Matches: 64, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
41 3 0.05
42 27 0.42
43 32 0.50
44 2 0.03
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (42 bp):
GAGATTACATGTAAGACCATATCTGGGATATGGCATCGATAC
Found at i:82345156 original size:27 final size:27
Alignment explanation
Indices: 82345098--82345158 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
82345088 GCTTTTAGAG
*
82345098 CCAATGGAAGAACCACAACCTGTGCCG
1 CCAATGGAAGAACCACAACCTGTGCCA
* *
82345125 GCAATGGAAGATCCACAACCTGTGCCA
1 CCAATGGAAGAACCACAACCTGTGCCA
82345152 CCAATGG
1 CCAATGG
82345159 TGCAAAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.33, C:0.31, G:0.23, T:0.13
Consensus pattern (27 bp):
CCAATGGAAGAACCACAACCTGTGCCA
Found at i:82345375 original size:32 final size:32
Alignment explanation
Indices: 82345334--82345399 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
82345324 TTTTGGAAAG
82345334 CTCCATCCTACACTTGACCCGCACAAGATGTA
1 CTCCATCCTACACTTGACCCGCACAAGATGTA
82345366 CTCCATCCTACACTTGACCCGCACAAGATGTA
1 CTCCATCCTACACTTGACCCGCACAAGATGTA
82345398 CT
1 CT
82345400 ATCCATTACC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.27, C:0.38, G:0.12, T:0.23
Consensus pattern (32 bp):
CTCCATCCTACACTTGACCCGCACAAGATGTA
Found at i:82346477 original size:18 final size:18
Alignment explanation
Indices: 82346456--82346515 Score: 50
Period size: 17 Copynumber: 3.3 Consensus size: 18
82346446 CAAAAGCATT
82346456 GTGAGGGTTAAAAGCAAA
1 GTGAGGGTTAAAAGCAAA
* *
82346474 GTGAGAGTTGCAAAAGCATA
1 GTGAGGGTT--AAAAGCAAA
* * *
82346494 G-AACGGATAAAAGCAAA
1 GTGAGGGTTAAAAGCAAA
82346511 GTGAG
1 GTGAG
82346516 TAAAATAAGA
Statistics
Matches: 30, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
17 9 0.30
18 9 0.30
19 3 0.10
20 9 0.30
ACGTcount: A:0.45, C:0.08, G:0.32, T:0.15
Consensus pattern (18 bp):
GTGAGGGTTAAAAGCAAA
Found at i:82349519 original size:21 final size:21
Alignment explanation
Indices: 82349495--82349549 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
82349485 CTTATAAATT
82349495 TTTATTATATATACATTTTAC
1 TTTATTATATATACATTTTAC
**
82349516 TTTA-TATATTATTTATTTTAC
1 TTTATTATA-TATACATTTTAC
*
82349537 TATATTTATATAT
1 TTTA-TTATATAT
82349550 GTAAATTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 4 0.14
21 17 0.61
22 3 0.11
23 4 0.14
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTATTATATATACATTTTAC
Found at i:82349584 original size:41 final size:40
Alignment explanation
Indices: 82349444--82349584 Score: 119
Period size: 41 Copynumber: 3.4 Consensus size: 40
82349434 AAAAATAATG
*
82349444 TATATTATTTTTATTTATATATTATATTATTATATACGTTTCT
1 TATATTATTTTTATTTATATATTATATTATTATATA---TTAT
* * *
82349487 TATA-AATTTTTA-TTATATATACATTTTACTTTATATATTAT
1 TATATTATTTTTATTTATATAT-TATATTA--TTATATATTAT
* *
82349528 T-TATT-TTACTATATTTATATATGTAAATTATTATATATTAT
1 TATATTATT--TTTATTTATATAT-TATATTATTATATATTAT
82349569 TATATTATTTTTATTT
1 TATATTATTTTTATTT
82349585 TTAACTATTT
Statistics
Matches: 78, Mismatches: 11, Indels: 20
0.72 0.10 0.18
Matches are distributed among these distances:
40 4 0.05
41 30 0.38
42 19 0.24
43 18 0.23
44 7 0.09
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (40 bp):
TATATTATTTTTATTTATATATTATATTATTATATATTAT
Found at i:82360467 original size:28 final size:28
Alignment explanation
Indices: 82360393--82360468 Score: 68
Period size: 28 Copynumber: 2.7 Consensus size: 28
82360383 TGTATATTAT
82360393 TTTTA-TTTATATATTATATTATTATATAC
1 TTTTACTTTATATA-T-TATTATTATATAC
* * *
82360422 GTTT-CTTATAAATTTTATTA-TATATAC
1 TTTTACTT-TATATATTATTATTATATAC
82360449 ATTTTACTTTATATATTATT
1 -TTTTACTTTATATATTATT
82360469 TGTTTTACTA
Statistics
Matches: 37, Mismatches: 6, Indels: 9
0.71 0.12 0.17
Matches are distributed among these distances:
27 7 0.19
28 17 0.46
29 9 0.24
30 4 0.11
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61
Consensus pattern (28 bp):
TTTTACTTTATATATTATTATTATATAC
Found at i:82364700 original size:28 final size:28
Alignment explanation
Indices: 82364631--82364731 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
82364621 GACAAGATTG
* * * *
82364631 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
82364661 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
82364689 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
82364718 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
82364732 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:82364725 original size:29 final size:28
Alignment explanation
Indices: 82364660--82364731 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
82364650 AAAATTGTAC
*
82364660 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
82364688 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
82364717 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
82364732 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:82372509 original size:28 final size:28
Alignment explanation
Indices: 82372440--82372540 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
82372430 GACAAGATTG
* * * *
82372440 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
82372470 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
82372498 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
82372527 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
82372541 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:82372534 original size:29 final size:28
Alignment explanation
Indices: 82372469--82372540 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
82372459 AAAATTGTAC
*
82372469 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
82372497 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
82372526 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
82372541 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:82396794 original size:40 final size:39
Alignment explanation
Indices: 82396626--82396796 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
82396616 AGAAATTGAA
* *
82396626 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
82396666 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
82396706 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
82396746 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
82396786 TGATATCCGGG
1 TGATATCCGGG
82396797 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:82404824 original size:40 final size:39
Alignment explanation
Indices: 82404656--82404826 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
82404646 AGAAATTGAA
* *
82404656 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
82404696 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
82404736 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
82404776 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
82404816 TGATATCCGGG
1 TGATATCCGGG
82404827 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:82406798 original size:44 final size:42
Alignment explanation
Indices: 82406727--82406871 Score: 130
Period size: 43 Copynumber: 3.4 Consensus size: 42
82406717 CTATTCTACA
** * * *
82406727 TGTAAGACCATGTCTATGACGTTGGCATCGATTTCTGTTTTGCG
1 TGTAAGACCATGTCTGGGAC-ATGGCATCGATATCTGATTT-CG
*
82406771 TGTAAGACCATGTTTGGGACATCGGCATC-ATATCTGATTTCG
1 TGTAAGACCATGTCTGGGACAT-GGCATCGATATCTGATTTCG
* * * * * *
82406813 TGTAAGACCTTATCTGGGACAGTGGCATCGATGTTTGATTACA
1 TGTAAGACCATGTCTGGGACA-TGGCATCGATATCTGATTTCG
*
82406856 TGTAAGACCACGTCTG
1 TGTAAGACCATGTCTG
82406872 AGATTTTGGC
Statistics
Matches: 82, Mismatches: 16, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
42 26 0.32
43 33 0.40
44 23 0.28
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.34
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATGGCATCGATATCTGATTTCG
Found at i:82411375 original size:28 final size:27
Alignment explanation
Indices: 82411312--82411381 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
82411302 ATAGTGAGTC
*
82411312 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
82411339 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
82411367 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82411382 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:82415230 original size:79 final size:80
Alignment explanation
Indices: 82415122--82415344 Score: 360
Period size: 79 Copynumber: 2.8 Consensus size: 80
82415112 ACCGCATGAT
* * * * *
82415122 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
82415187 CATCACTAGCACGAA
66 CATCACTAGCACGAA
* *
82415202 TGCTCCTC-GAACTTAGTCCGGATACATCACTAGCACGAATGCTCCTCAGAACTTAGTCCGGATA
1 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
82415266 CATCACTAGCACGAA
66 CATCACTAGCACGAA
*
82415281 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG-CCGGATA
1 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
82415345 TAACCACAAG
Statistics
Matches: 132, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
79 79 0.60
80 53 0.40
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
CATCACTAGCACGAA
Found at i:82415357 original size:40 final size:40
Alignment explanation
Indices: 82415122--82415344 Score: 369
Period size: 40 Copynumber: 5.6 Consensus size: 40
82415112 ACCGCATGAT
* * * *
82415122 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
82415162 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
82415202 TGCTCCTC-GAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
82415241 TGCTCCTCAGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
82415281 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
82415321 TGCTCTTCGGAACTTAG-CCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATA
82415345 TAACCACAAG
Statistics
Matches: 175, Mismatches: 7, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
39 46 0.26
40 129 0.74
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:82415387 original size:40 final size:40
Alignment explanation
Indices: 82415273--82415461 Score: 150
Period size: 40 Copynumber: 4.7 Consensus size: 40
82415263 ATACATCACT
* ** * * * *
82415273 AGCACGAATGCTCTTCGGAACTTAGTCCGGATA-CATCACT
1 AGCACAAATGC-CTTCGGGTCTTAGCCCGGATATAACCACA
* **
82415313 AGCACGAATGCTCTTCGGAACTTAG-CCGGATATAACCACA
1 AGCACAAATGC-CTTCGGGTCTTAGCCCGGATATAACCACA
* * * * *
82415353 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAACAACTC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCAC-A
** *
82415394 A-CACAAATGCCTTCGGGTCTTAGCCCGGATATATTCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCACA
* *
82415433 AGCATAAATGCCTTCGGGACTTAGCCCGG
1 AGCACAAATGCCTTCGGGTCTTAGCCCGG
82415462 GTATCATTCA
Statistics
Matches: 125, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 18 0.14
40 106 0.85
41 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCACA
Found at i:82415408 original size:119 final size:119
Alignment explanation
Indices: 82415139--82415458 Score: 328
Period size: 119 Copynumber: 2.7 Consensus size: 119
82415129 CGGGACCTAG
* * *
82415139 CCCGGATGCATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
1 CCCGGATACAACACTAGCACAAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
* * * * *
82415204 CTCCTC-GAACTTAGTCCGGATACATCACTAGCACGAATGCTCCTCAGAACTTAG
66 CTCTTCGGAACTTAG-CCGGATAAACCACAAGCACGAATGCTCCTCAGAACTTAA
* * *
82415258 TCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
1 CCCGGATACAACACTAGCACAAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
* * **
82415323 CTCTTCGGAACTTAGCCGGATATAACCACAAGCAC-AATTGC-CTTCGGGTCTTAA
66 CTCTTCGGAACTTAGCCGGATA-AACCACAAGCACGAA-TGCTCCTCAGAACTTAA
* * ** * * **
82415377 CCCGGGTATAACAACTCA-CACAAATGC-CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAA
1 CCCGGATACAAC-ACT-AGCACAAATGCTCTTCGGAACTTAGTCCGGATACA-TCACTAGCACGA
*
82415440 ATGC-CTTCGGGACTTAGCC
63 ATGCTCTTCGGAACTTAGCC
82415459 CGGGTATCAT
Statistics
Matches: 172, Mismatches: 23, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
119 126 0.73
120 45 0.26
121 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (119 bp):
CCCGGATACAACACTAGCACAAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
CTCTTCGGAACTTAGCCGGATAAACCACAAGCACGAATGCTCCTCAGAACTTAA
Found at i:82417490 original size:49 final size:49
Alignment explanation
Indices: 82417422--82417653 Score: 356
Period size: 49 Copynumber: 4.7 Consensus size: 49
82417412 ATTCACATTA
* * *
82417422 GCCATTCGGCTTTACCACATATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
* *
82417471 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
82417520 GCCATTAGGCCTTATCACATATATATATACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
* * * *
82417569 GCCATTAGGCCTTATCACATATACATACATTTTCGCATTCATCGCATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
* *
82417618 GCCATTAGGCCTCATCACATATATATACATTTTCAC
1 GCCATTAGGCCTTATCACATATATATACACTTTCAC
82417654 GAATCTTGAT
Statistics
Matches: 167, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 167 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
Found at i:82421731 original size:40 final size:40
Alignment explanation
Indices: 82421495--82421718 Score: 378
Period size: 40 Copynumber: 5.6 Consensus size: 40
82421485 CCGGCATGAT
* * * *
82421495 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
82421535 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
82421575 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
82421615 TGCTCCTCAGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
82421655 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
82421695 TGCTCTTCGGAACTTAG-CCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATA
82421719 TAACCACAAG
Statistics
Matches: 176, Mismatches: 8, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 7 0.04
40 169 0.96
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:82421761 original size:40 final size:40
Alignment explanation
Indices: 82421647--82421835 Score: 150
Period size: 40 Copynumber: 4.7 Consensus size: 40
82421637 ATACATCACT
* ** * * * *
82421647 AGCACGAATGCTCTTCGGAACTTAGTCCGGATA-CATCACT
1 AGCACAAATGC-CTTCGGGTCTTAGCCCGGATATAACCACA
* **
82421687 AGCACGAATGCTCTTCGGAACTTAG-CCGGATATAACCACA
1 AGCACAAATGC-CTTCGGGTCTTAGCCCGGATATAACCACA
* * * * *
82421727 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAACAACTC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCAC-A
** *
82421768 A-CACAAATGCCTTCGGGTCTTAGCCCGGATATATTCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCACA
* *
82421807 AGCATAAATGCCTTCGGGACTTAGCCCGG
1 AGCACAAATGCCTTCGGGTCTTAGCCCGG
82421836 GTATCATTCA
Statistics
Matches: 125, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 18 0.14
40 106 0.85
41 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCACA
Found at i:82421777 original size:120 final size:119
Alignment explanation
Indices: 82421512--82421832 Score: 337
Period size: 120 Copynumber: 2.7 Consensus size: 119
82421502 CGGGACCTAG
* * *
82421512 CCCGGATGCATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
1 CCCGGATACAACACTAGCACAAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
* * * * *
82421577 CTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCCTCAGAACTTAG
66 CTCTTCGGAACTTAG-CCGGATAAACCACAAGCACGAATGCTCCTCAGAACTTAA
* * *
82421632 TCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
1 CCCGGATACAACACTAGCACAAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
* * **
82421697 CTCTTCGGAACTTAGCCGGATATAACCACAAGCAC-AATTGC-CTTCGGGTCTTAA
66 CTCTTCGGAACTTAGCCGGATA-AACCACAAGCACGAA-TGCTCCTCAGAACTTAA
* * ** * * **
82421751 CCCGGGTATAACAACTCA-CACAAATGC-CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAA
1 CCCGGATACAAC-ACT-AGCACAAATGCTCTTCGGAACTTAGTCCGGATACA-TCACTAGCACGA
*
82421814 ATGC-CTTCGGGACTTAGCC
63 ATGCTCTTCGGAACTTAGCC
82421833 CGGGTATCAT
Statistics
Matches: 173, Mismatches: 23, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
119 58 0.34
120 114 0.66
121 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.24
Consensus pattern (119 bp):
CCCGGATACAACACTAGCACAAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
CTCTTCGGAACTTAGCCGGATAAACCACAAGCACGAATGCTCCTCAGAACTTAA
Found at i:82423883 original size:49 final size:49
Alignment explanation
Indices: 82423814--82424027 Score: 347
Period size: 49 Copynumber: 4.4 Consensus size: 49
82423804 TTTACCACAT
82423814 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
82423863 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
82423912 ATATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * * * *
82423961 ATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
82424010 ATATATATACATTTTCAC
1 ATATATATACACTTTCAC
82424028 GAATCTTGAT
Statistics
Matches: 152, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 152 1.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:82428956 original size:30 final size:30
Alignment explanation
Indices: 82428897--82428958 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
82428887 ACATCAAAAT
** * *
82428897 TAAATTTTAATTATTTTTAACTAATAATTA
1 TAAATTTTAATTATAATTAACAAAAAATTA
*
82428927 TAAATTTTAATTATAATTATCAAAAAATTA
1 TAAATTTTAATTATAATTAACAAAAAATTA
82428957 TA
1 TA
82428959 TTTTATGTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (30 bp):
TAAATTTTAATTATAATTAACAAAAAATTA
Found at i:82429125 original size:18 final size:18
Alignment explanation
Indices: 82429084--82429127 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
82429074 TGTGATTATC
*
82429084 ATAATTGTTTATTATATT
1 ATAATTATTTATTATATT
*
82429102 AAAATTATTTATTA-ATGT
1 ATAATTATTTATTATAT-T
82429120 ATAATTAT
1 ATAATTAT
82429128 CAAAAATTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 2 0.09
18 20 0.91
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (18 bp):
ATAATTATTTATTATATT
Done.