Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 286 of 444
Found at i:82736758 original size:46 final size:46
Alignment explanation
Indices: 82736698--82736917 Score: 278
Period size: 46 Copynumber: 5.0 Consensus size: 46
82736688 TTTGACATGA
* * * * * *
82736698 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
82736744 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
82736790 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
82736836 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C---TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
82736874 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
82736918 AGAGCACACT
Statistics
Matches: 154, Mismatches: 11, Indels: 18
0.84 0.06 0.10
Matches are distributed among these distances:
38 34 0.22
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 4 0.03
46 108 0.70
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:82736881 original size:38 final size:38
Alignment explanation
Indices: 82736830--82736905 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
82736820 ACATTTCATA
82736830 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
82736868 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
82736906 ATTTCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:82739071 original size:11 final size:11
Alignment explanation
Indices: 82739055--82739106 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
82739045 TATACTAAAT
82739055 AAATAATAATA
1 AAATAATAATA
*
82739066 AAATAAT-ATT
1 AAATAATAATA
* *
82739076 AAATATCTCATA
1 AAATA-ATAATA
*
82739088 AAATATTAATA
1 AAATAATAATA
82739099 AAATAATA
1 AAATAATA
82739107 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:82742007 original size:46 final size:46
Alignment explanation
Indices: 82741947--82742166 Score: 278
Period size: 46 Copynumber: 5.0 Consensus size: 46
82741937 TTTGACATGA
* * * * * *
82741947 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
82741993 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
82742039 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
82742085 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C---TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
82742123 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
82742167 AGAGCACACT
Statistics
Matches: 154, Mismatches: 11, Indels: 18
0.84 0.06 0.10
Matches are distributed among these distances:
38 34 0.22
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 4 0.03
46 108 0.70
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:82742130 original size:38 final size:38
Alignment explanation
Indices: 82742079--82742154 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
82742069 ACATTTCATA
82742079 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
82742117 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
82742155 ATTTCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:82744265 original size:11 final size:11
Alignment explanation
Indices: 82744249--82744300 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
82744239 TATACTAAAT
82744249 AAATAATAATA
1 AAATAATAATA
*
82744260 AAATAAT-ATT
1 AAATAATAATA
* *
82744270 AAATATCTCATA
1 AAATA-ATAATA
*
82744282 AAATATTAATA
1 AAATAATAATA
82744293 AAATAATA
1 AAATAATA
82744301 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:82749725 original size:17 final size:16
Alignment explanation
Indices: 82749701--82749732 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
82749691 ATGACATCTT
82749701 AAAAAAAAAAGAAAAG
1 AAAAAAAAAAGAAAAG
82749717 AAAAGAAAAAAGAAAA
1 AAAA-AAAAAAGAAAA
82749733 AGAGAGAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAGAAAAG
Found at i:82750800 original size:73 final size:73
Alignment explanation
Indices: 82750680--82750846 Score: 253
Period size: 73 Copynumber: 2.3 Consensus size: 73
82750670 ATTTCCGTTT
*
82750680 TTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTCAATTTATGCTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACG
*
82750745 CTGAGGTAA
65 CCGAGGTAA
* *
82750754 TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGC
1 TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGC
*
82750819 CGAGGTAT
66 CGAGGTAA
* * *
82750827 TTTTAATTTCTGTTTTTCAA
1 TTTCAATTTATGCTTTTCAA
82750847 TTTCTACTTT
Statistics
Matches: 85, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
73 67 0.79
74 18 0.21
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.34
Consensus pattern (73 bp):
TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGC
CGAGGTAA
Found at i:82750870 original size:13 final size:13
Alignment explanation
Indices: 82750826--82750870 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
82750816 CGCCGAGGTA
82750826 TTTTTAATTTCTG
1 TTTTTAATTTCTG
*
82750839 TTTTTCAATTTCTA
1 TTTTT-AATTTCTG
*
82750853 CTTTTAATTTCTG
1 TTTTTAATTTCTG
82750866 TTTTT
1 TTTTT
82750871 CAAAAATCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.16, C:0.11, G:0.04, T:0.69
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:82750893 original size:100 final size:101
Alignment explanation
Indices: 82750757--82751042 Score: 389
Period size: 100 Copynumber: 2.9 Consensus size: 101
82750747 GAGGTAATTT
* * * *
82750757 CAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGCCGA
1 CAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
* *
82750822 GGTATTTTTAATTTCTGTTTTTCAATTTCT-ACTTT
66 GGTATTTTCAATTTCTGTTTTTCAATTTCTGACTTA
* * * *
82750857 TAATTTCTGTTTTTCAAAAATCAACTCATTTTGCGAGAGGTGAGTTGAGCCTCAGAGCACGCTGA
1 CAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
* * *
82750922 GGTATTTTCAATTTCTATTTTTCAATTTTTGCCTTA
66 GGTATTTTCAATTTCTGTTTTTCAATTTCTGACTTA
* * * *
82750958 CAAATTCTGCTTTTC--AAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACATGCTGA
1 CAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
*
82751021 GGTATTTTCAATTTTTGTTTTT
66 GGTATTTTCAATTTCTGTTTTT
82751043 TTAATTTATG
Statistics
Matches: 162, Mismatches: 23, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
99 63 0.39
100 84 0.52
101 15 0.09
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.40
Consensus pattern (101 bp):
CAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
GGTATTTTCAATTTCTGTTTTTCAATTTCTGACTTA
Found at i:82751042 original size:99 final size:99
Alignment explanation
Indices: 82750764--82751134 Score: 374
Period size: 100 Copynumber: 3.8 Consensus size: 99
82750754 TTTCAATTTA
* * * *
82750764 TGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGCCGAGGTATTT
1 TGCTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTT
* ** *
82750829 TTAATTTCTGTTTTTCAATTTCTACTTTTAATTTC
65 TCAATTTCTGTTTTTCAATTTCTACTTACAAATTC
* *
82750864 TGTTTTTCAAAAATCAACTCATTTTGCGAGAGGTGAGTTGAGCCTCA-GAGCACGCTGAGGTATT
1 TGCTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA-CACGCTGAGGTATT
* * *
82750928 TTCAATTTCTATTTTTCAATTTTTGCCTTACAAATTC
64 TTCAATTTCTGTTTTTCAATTTCT-ACTTACAAATTC
* *
82750965 TGCTTTTC-AAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACATGCTGAGGTATTTT
1 TGCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
* * * * *
82751029 CAATTTTTGTTTTTTTAATTTAT-GTTTCAAA---
66 CAATTTCTG-TTTTTCAATTTCTACTTACAAATTC
* * *
82751060 --------AAAAGTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTT
1 TGCTTTTCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTT
*
82751117 TCAATTTCTGTCTTTCAA
65 TCAATTTCTGTTTTTCAA
82751135 AAAAATCAGC
Statistics
Matches: 234, Mismatches: 31, Indels: 24
0.81 0.11 0.08
Matches are distributed among these distances:
88 9 0.04
89 56 0.24
98 6 0.03
99 58 0.25
100 90 0.38
101 15 0.06
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39
Consensus pattern (99 bp):
TGCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
CAATTTCTGTTTTTCAATTTCTACTTACAAATTC
Found at i:82751304 original size:76 final size:74
Alignment explanation
Indices: 82751053--82751430 Score: 435
Period size: 75 Copynumber: 5.0 Consensus size: 74
82751043 TTAATTTATG
* * *
82751053 TTTCAAAAAAAGTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
1 TTTC-AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
* * *
82751118 CAATTTCTGTC
64 CAAATTCTTTT
* * * *
82751129 TTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA--AGACGCTGAGGTAATTTC
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
82751192 -AATT-TTTGT
65 AAATTCTTT-T
* *
82751201 TTGTC-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTC
1 TT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
82751265 AAATTCTATTT
65 AAATTCT-TTT
*
82751276 TTATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTC
1 TT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
* *
82751341 AATTTCTGTT
65 AAATTCTTTT
* * **
82751351 TTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGTCACACG-TCGAGGTCCT
1 TTTCAAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCT-GAGGTATT
*
82751415 TTCAAATTCTATT
62 TTCAAATTCTTTT
82751428 TTT
1 TTT
82751431 AATTTCTCTT
Statistics
Matches: 264, Mismatches: 26, Indels: 23
0.84 0.08 0.07
Matches are distributed among these distances:
71 38 0.14
72 5 0.02
73 32 0.12
74 10 0.04
75 78 0.30
76 76 0.29
77 25 0.09
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (74 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
AATTCTTTT
Found at i:82751397 original size:75 final size:74
Alignment explanation
Indices: 82751053--82751390 Score: 466
Period size: 76 Copynumber: 4.5 Consensus size: 74
82751043 TTAATTTATG
* * *
82751053 TTTCAAAAAAAGTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
1 TTTC-AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
*
82751118 CAATTTCTGTC
64 CAATTTCTGTT
* * * *
82751129 TTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA--AGACGCTGAGGTAATTTC
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
*
82751192 AATTTTTGTT
65 AATTTCTGTT
* * *
82751202 TGTC-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCA
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
* *
82751266 AATTCTATTT
66 ATTTCT-GTT
*
82751276 TTATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTC
1 TT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
82751341 AATTTCTGTT
65 AATTTCTGTT
82751351 TTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTTCAAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAG
82751391 TCTCGGGTCA
Statistics
Matches: 232, Mismatches: 24, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
71 36 0.16
73 46 0.20
74 9 0.04
75 68 0.29
76 73 0.31
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.31
Consensus pattern (74 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
ATTTCTGTT
Found at i:82751649 original size:72 final size:72
Alignment explanation
Indices: 82751529--82751882 Score: 446
Period size: 72 Copynumber: 4.8 Consensus size: 72
82751519 CCATTTCTAT
* *
82751529 TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAGGACAC
1 TTTCAATTTCTG-TTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACAC
82751594 GCTGAGGTAA
63 GCTGAGGTAA
* *
82751604 TTTCAATTT-TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
1 TTTCAATTTCTGTTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGC
*
82751668 TGAGGTAT
65 TGAGGTAA
* * * *
82751676 TTTTAATTTCTGTCTTTAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ATG
1 TTTCAATTTCTGT-TTT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACG
82751739 CTGAGGTAA
64 CTGAGGTAA
* * * *
82751748 TTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAAGACACGT
1 TTTCAATTTCTGTTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGC
*
82751813 TGAGGTAT
65 TGAGGTAA
* *
82751821 TTTCAATTTCTATCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTT-AACCTCAAGAC
1 TTTCAATTTCTGT-TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGAC
82751883 GCTAAGGTGT
Statistics
Matches: 243, Mismatches: 26, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
71 40 0.16
72 79 0.33
73 29 0.12
74 57 0.23
75 38 0.16
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33
Consensus pattern (72 bp):
TTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCT
GAGGTAA
Found at i:82751792 original size:145 final size:146
Alignment explanation
Indices: 82751526--82752037 Score: 616
Period size: 145 Copynumber: 3.4 Consensus size: 146
82751516 TTTCCATTTC
* * *
82751526 TATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAGGA
1 TATTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA--A
*
82751591 CACGCTGAGGTAATTTCAA-TTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
64 GACGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
82751655 CCTCAAGACACGTTGAGG
129 CCTCAAGACACGTTGAGG
*
82751673 TATTTTTAATTTCTGTCTTT-AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
1 TATTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
* *
82751737 TGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCC
66 CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
82751802 TCAAGACACGTTGAGG
131 TCAAGACACGTTGAGG
*
82751818 TATTTTCAATTTCTATCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTT-AACCTCAAGA
1 TATTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
* ** *
82751882 CGCTAAGGTGTTTTCCATTTTTGTTCTTCAATTTCTGTGTTTCAAAAAAATCAACTCATATTGCG
66 CGCTGAGGTAATTTCAATTTTTG----------T-T-TG--TC--AAAAATCAACTCATATTGCG
* ** *
82751947 AGAGGTGAGTTGAGCCACGGGACACGCTGAGG
115 AGAGGTGAGTTGAGCCTCAAGACACGTTGAGG
* * * * * *
82751979 TATTTTCAAATTCTATTTTTATCAAAAAAAATCAACTCACATTGTGAGAGGTGAGTTGA
1 TATTTTCAATTTCT-GTCTT-TC-AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGA
82752038 GCCTTGGGAC
Statistics
Matches: 318, Mismatches: 25, Indels: 26
0.86 0.07 0.07
Matches are distributed among these distances:
144 18 0.06
145 108 0.34
146 72 0.23
147 18 0.06
155 1 0.00
156 1 0.00
157 2 0.01
159 2 0.01
161 60 0.19
162 3 0.01
163 2 0.01
164 30 0.09
165 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.34
Consensus pattern (146 bp):
TATTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
TCAAGACACGTTGAGG
Found at i:82752012 original size:78 final size:76
Alignment explanation
Indices: 82751908--82752192 Score: 272
Period size: 78 Copynumber: 3.6 Consensus size: 76
82751898 ATTTTTGTTC
* * *
82751908 TTCAATTTCTGTGTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCACGGGACAC
1 TTCAATTTCTTTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
82751972 GCTGAGGTATT
66 GCTGAGGTATT
* * * *
82751983 TTCAAATTCTATTTTTATCAAAAAAAATCAACTCACATTGTGAGAGGTGAGTTGAGCCTTGGGAC
1 TTCAATTTCT-TTTTT-TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGAC
82752048 ACGCTGAGGTATT
64 ACGCTGAGGTATT
* *
82752061 TTCAATTTCTGCTTTTCAATTTCTACATTTCAAAAGAATCAACTCATATTGCAAGAGGTGAGTTA
1 TTCAA-TT-T-CTTTT---TTTC-A-A----AAAA-AATCAACTCATATTGCGAGAGGTGAGTTG
**
82752126 AGCCTCGGGTCACACGCTGAGGCGTT
53 AGCCTCGGG--ACACGCTGAGGTATT
**
82752152 TTCAATTTCTGCTTTTC---AAAAATCAACTCATATTGCGAGAG
1 TTCAATTTCTTTTTTTCAAAAAAAATCAACTCATATTGCGAGAG
82752193 AGTCAATTCA
Statistics
Matches: 174, Mismatches: 18, Indels: 36
0.76 0.08 0.16
Matches are distributed among these distances:
75 29 0.17
76 6 0.03
77 2 0.01
78 59 0.34
79 1 0.01
80 4 0.02
81 2 0.01
82 2 0.01
83 3 0.02
84 1 0.01
85 4 0.02
88 7 0.04
89 34 0.20
90 2 0.01
91 18 0.10
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (76 bp):
TTCAATTTCTTTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
GCTGAGGTATT
Found at i:82752091 original size:14 final size:14
Alignment explanation
Indices: 82752060--82752093 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
82752050 GCTGAGGTAT
* *
82752060 TTTCAATTTCTGCT
1 TTTCAATTTCTACA
82752074 TTTCAATTTCTACA
1 TTTCAATTTCTACA
82752088 TTTCAA
1 TTTCAA
82752094 AAGAATCAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.21, G:0.03, T:0.53
Consensus pattern (14 bp):
TTTCAATTTCTACA
Found at i:82752108 original size:167 final size:161
Alignment explanation
Indices: 82751766--82752192 Score: 484
Period size: 167 Copynumber: 2.6 Consensus size: 161
82751756 TTTGTTTGTC
* ** *
82751766 AAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
* * * *
82751831 TATCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTAACCTCAAGACGCTAAGGTGTTTT
66 TATCTTTCAAAAAAATCAACTCACATTGCGAGAGGTGAGTTAACCTCAACACGCTAAGGTATTTT
* * ***
82751896 CCATTTTTGTTCTTCAATTTCTGTGTTTCAA
131 CAATTTCTGTTCTTCAATTTCTACATTTCAA
* *
82751927 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCACGGGACACGCTGAGGTATTTTCAAATTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
* * * ** *
82751992 TATTTTTATCAAAAAAAATCAACTCACATTGTGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGG
66 TA-TCTT-TC-AAAAAAATCAACTCACATTGCGAGAGGTGAGTT-AACC-T-CAACACGCTAAGG
82752057 TATTTTCAATTTCTGCTT-TTCAATTTCTACATTTCAA
125 TATTTTCAATTTCTG-TTCTTCAATTTCTACATTTCAA
* * * **
82752094 AAGAATCAACTCATATTGCAAGAGGTGAGTTAAGCCTCGGGTCACACGCTGAGGCGTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCTGAGGTATTTTCAATT
* *
82752159 TCT-GCTTTTC--AAAAATCAACTCATATTGCGAGAG
64 TCTATC-TTTCAAAAAAATCAACTCACATTGCGAGAG
82752193 AGTCAATTCA
Statistics
Matches: 224, Mismatches: 32, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
161 61 0.27
162 3 0.01
163 2 0.01
164 52 0.23
165 3 0.01
166 1 0.00
167 76 0.34
168 4 0.02
169 22 0.10
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (161 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
TATCTTTCAAAAAAATCAACTCACATTGCGAGAGGTGAGTTAACCTCAACACGCTAAGGTATTTT
CAATTTCTGTTCTTCAATTTCTACATTTCAA
Found at i:82752164 original size:91 final size:89
Alignment explanation
Indices: 82752003--82752170 Score: 246
Period size: 89 Copynumber: 1.9 Consensus size: 89
82751993 ATTTTTATCA
** * * *
82752003 AAAAAAATCAACTCACATTGTGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGGTATTTTCAATT
1 AAAAAAATCAACTCACATTGCAAGAGGTGAGTTAAGCCTCGGGACACGCTGAGGCATTTTCAATT
82752068 TCTGCTTTTCAATTTCTACATTTC
66 TCTGCTTTTCAATTTCTACATTTC
* * *
82752092 AAAAGAATCAACTCATATTGCAAGAGGTGAGTTAAGCCTCGGGTCACACGCTGAGGCGTTTTCAA
1 AAAAAAATCAACTCACATTGCAAGAGGTGAGTTAAGCCTCGGG--ACACGCTGAGGCATTTTCAA
82752157 TTTCTGCTTTTCAA
64 TTTCTGCTTTTCAA
82752171 AAATCAACTC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
89 37 0.54
91 32 0.46
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (89 bp):
AAAAAAATCAACTCACATTGCAAGAGGTGAGTTAAGCCTCGGGACACGCTGAGGCATTTTCAATT
TCTGCTTTTCAATTTCTACATTTC
Found at i:82752914 original size:30 final size:30
Alignment explanation
Indices: 82752877--82752962 Score: 145
Period size: 30 Copynumber: 2.9 Consensus size: 30
82752867 CTAGCCTTTG
82752877 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
82752907 TCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
82752937 CCACTACCTACTCCACTAGCCACACT
1 CCACCACCAACTCCACTAGCCACACT
82752963 CCACCACCAC
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 52 1.00
ACGTcount: A:0.27, C:0.49, G:0.06, T:0.19
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:82753467 original size:19 final size:19
Alignment explanation
Indices: 82753443--82753503 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
82753433 TTTTTGTTAT
82753443 TATTATATTCTTA-ATATTA
1 TATTATATTCTTATATA-TA
*
82753462 TATTATATT-ATATATATA
1 TATTATATTCTTATATATA
*
82753480 TATATATATTCTTTTA-ATA
1 TAT-TATATTCTTATATATA
82753499 TATTA
1 TATTA
82753504 GGTATATTCT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
18 9 0.25
19 24 0.67
20 3 0.08
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.57
Consensus pattern (19 bp):
TATTATATTCTTATATATA
Found at i:82753484 original size:25 final size:25
Alignment explanation
Indices: 82753456--82753626 Score: 88
Period size: 25 Copynumber: 6.7 Consensus size: 25
82753446 TATATTCTTA
82753456 ATATTATATTATATTATATATATAT
1 ATATTATATTATATTATATATATAT
* *
82753481 ATA-TATATTCTTTTA-ATATATTAGGT
1 ATATTATATTATATTATATATA-TA--T
*
82753507 ATATTCTAAATTCTATATTATATATATAT
1 ATA-T-TATA-T-TATATTATATATATAT
* * *
82753536 -TA-TACTATTTTATGTATATATCTTT
1 ATATTA-TATTATAT-TATATATATAT
*
82753561 AATACTATATTAT-TTATATATATAT
1 -ATATTATATTATATTATATATATAT
* *
82753586 ATATTACATGT-TATCT-TATGTATAT
1 ATATTATAT-TATAT-TATATATATAT
*
82753611 ATTTTA-ATTATATTAT
1 ATATTATATTATATTAT
82753627 GTATGTATTT
Statistics
Matches: 111, Mismatches: 16, Indels: 39
0.67 0.10 0.23
Matches are distributed among these distances:
23 7 0.06
24 30 0.27
25 39 0.35
26 7 0.06
27 7 0.06
28 4 0.04
29 4 0.04
30 1 0.01
31 7 0.06
32 5 0.05
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (25 bp):
ATATTATATTATATTATATATATAT
Found at i:82753605 original size:56 final size:52
Alignment explanation
Indices: 82753456--82753626 Score: 136
Period size: 55 Copynumber: 3.1 Consensus size: 52
82753446 TATATTCTTA
*
82753456 ATATTATATTATATTATATATATATATATA-TATTCTT-T-TAATATATTAGGTATATT
1 ATATTAT-TTATATTATATATATAT-TATACTA-TCTTATGT-ATATATT--TTA-ATT
* * *
82753512 CTA-AATTCTATATTATATATATATTATACTATTTTATGTATATATCTTTAATACT
1 ATATTATT-TATATTATATATATATTATACTATCTTATGTATATAT-TTTAAT--T
**
82753567 ATATTATTTATA-TATATATATATTACATGTTATCTTATGTATATATTTTAATT
1 ATATTATTTATATTATATATATATT--ATACTATCTTATGTATATATTTTAATT
82753620 ATATTAT
1 ATATTAT
82753627 GTATGTATTT
Statistics
Matches: 96, Mismatches: 9, Indels: 23
0.75 0.07 0.18
Matches are distributed among these distances:
53 10 0.10
54 22 0.23
55 40 0.42
56 24 0.25
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (52 bp):
ATATTATTTATATTATATATATATTATACTATCTTATGTATATATTTTAATT
Found at i:82753620 original size:29 final size:29
Alignment explanation
Indices: 82753544--82753620 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 29
82753534 ATTATACTAT
82753544 TTTATGTATATATCTTTAA-TACTATATTA
1 TTTATGTATATAT-TTTAATTACTATATTA
* * *
82753573 TTTATATATATA-TAT-ATTAC-ATGTTA
1 TTTATGTATATATTTTAATTACTATATTA
82753599 TCTTATGTATATATTTTAATTA
1 T-TTATGTATATATTTTAATTA
82753621 TATTATGTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
26 7 0.18
27 15 0.38
28 2 0.05
29 15 0.38
ACGTcount: A:0.35, C:0.05, G:0.04, T:0.56
Consensus pattern (29 bp):
TTTATGTATATATTTTAATTACTATATTA
Found at i:82753627 original size:22 final size:23
Alignment explanation
Indices: 82753581--82753662 Score: 76
Period size: 25 Copynumber: 3.4 Consensus size: 23
82753571 TATTTATATA
* *
82753581 TATATATATTACATGTTATCTTATG
1 TATATATTTTACA--TTATATTATG
82753606 TATATATTTTA-ATTATATTATG
1 TATATATTTTACATTATATTATG
* *
82753628 TATGTATTTTTTACACTATATTATG
1 TA--TATATTTTACATTATATTATG
*
82753653 TACATATTTT
1 TATATATTTT
82753663 TAATATTATC
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
22 11 0.23
23 6 0.12
24 9 0.19
25 22 0.46
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.56
Consensus pattern (23 bp):
TATATATTTTACATTATATTATG
Found at i:82753840 original size:16 final size:15
Alignment explanation
Indices: 82753816--82753850 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
82753806 TAATTATTAT
82753816 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
82753832 TATTTTAATATTTTA
1 TATTCTAATATTTTA
82753847 TATT
1 TATT
82753851 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:82757654 original size:187 final size:188
Alignment explanation
Indices: 82757291--82758160 Score: 1638
Period size: 187 Copynumber: 4.6 Consensus size: 188
82757281 TATAAAACAT
** *
82757291 AATGTAAAAACCTTTTTAA-GTGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTG
1 AATGTAAAATGCTTTTCAACGTGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTG
82757355 AAGGTCTCCGGTTCGAGTCCGGGCGAAGCCATCCATACAGAATGTGTTTTGTTTCATTTTTAATA
66 AAGGTCTCCGGTTCGAGTCCGGGCGAAGCCATCCATACAGAATGTGTTTTGTTTCATTTTTAATA
82757420 ACCAAAAAAAAAAAAGTTGGTTTCTGCACATTTTACTATTTACTTAGTTATAAATAAA
131 ACCAAAAAAAAAAAAGTTGGTTTCTGCACATTTTACTATTTACTTAGTTATAAATAAA
82757478 AATGTAAAATGCTTTTCAACGTGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTG
1 AATGTAAAATGCTTTTCAACGTGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTG
82757543 AAGGTCTCCGGTTCGAGTCCGGGCGAAGCCATCCATACAGAATGTGTTTTGTTTCATTTTTAATA
66 AAGGTCTCCGGTTCGAGTCCGGGCGAAGCCATCCATACAGAATGTGTTTTGTTTCATTTTTAATA
82757608 ACC-AAAAAAAAAAAGTTGGTTTCTGCACATTTTACTATTTACTTAGTTATAAATAAA
131 ACCAAAAAAAAAAAAGTTGGTTTCTGCACATTTTACTATTTACTTAGTTATAAATAAA
82757665 AATGTAAAATGCTTTTCAACGTGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTG
1 AATGTAAAATGCTTTTCAACGTGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTG
82757730 AAGGTCTCCGGTTCGAGTCCGGGCGAAGCCATCCATACAGAATGTGTTTTGTTTCATTTTTAATA
66 AAGGTCTCCGGTTCGAGTCCGGGCGAAGCCATCCATACAGAATGTGTTTTGTTTCATTTTTAATA
82757795 ACCAAAAAAAAAAAAGTTGGTTTCTGCACATTTTACTATTTACTTAGTTATAAATAAA
131 ACCAAAAAAAAAAAAGTTGGTTTCTGCACATTTTACTATTTACTTAGTTATAAATAAA
*
82757853 AATGTAAAATGCTTTTCAATGTGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTG
1 AATGTAAAATGCTTTTCAACGTGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTG
82757918 AAGGTCTCCGGTTCGAGTCCGGGCGAAGCCATCCATACAGAATGTGTTTTGTTTCATTTTTAATA
66 AAGGTCTCCGGTTCGAGTCCGGGCGAAGCCATCCATACAGAATGTGTTTTGTTTCATTTTTAATA
*
82757983 ACCAAAAAAAAAAAA-TTGGTTTCTGCACATTTTACTATTTACTTAGCTATAAATAAA
131 ACCAAAAAAAAAAAAGTTGGTTTCTGCACATTTTACTATTTACTTAGTTATAAATAAA
*
82758040 AATGTAAAATACTTTTCAACGTGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTG
1 AATGTAAAATGCTTTTCAACGTGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTG
* * *
82758105 AAGGTCTCCGGTTCGAGTCCGGGCGAAGCCATCCATGCAGAATATATTTTGTTTCA
66 AAGGTCTCCGGTTCGAGTCCGGGCGAAGCCATCCATACAGAATGTGTTTTGTTTCA
82758161 CAAAGAAAAA
Statistics
Matches: 671, Mismatches: 10, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
187 360 0.54
188 311 0.46
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (188 bp):
AATGTAAAATGCTTTTCAACGTGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTG
AAGGTCTCCGGTTCGAGTCCGGGCGAAGCCATCCATACAGAATGTGTTTTGTTTCATTTTTAATA
ACCAAAAAAAAAAAAGTTGGTTTCTGCACATTTTACTATTTACTTAGTTATAAATAAA
Found at i:82758004 original size:375 final size:375
Alignment explanation
Indices: 82757278--82758160 Score: 1646
Period size: 375 Copynumber: 2.4 Consensus size: 375
82757268 AAATTAATAG
* *
82757278 AGCTATAAA-ACATAATGTAAAA-ACCTTTTTAA-GTGGTTTCGTGGTGTAGTTGGTTATCACGT
1 AGCTATAAATA-AAAATGTAAAATA-CTTTTCAACGTGGTTTCGTGGTGTAGTTGGTTATCACGT
82757340 CAGTCTAACACACTGAAGGTCTCCGGTTCGAGTCCGGGCGAAGCCATCCATACAGAATGTGTTTT
64 CAGTCTAACACACTGAAGGTCTCCGGTTCGAGTCCGGGCGAAGCCATCCATACAGAATGTGTTTT
82757405 GTTTCATTTTTAATAACCAAAAAAAAAAAAGTTGGTTTCTGCACATTTTACTATTTACTTAGTTA
129 GTTTCATTTTTAATAACCAAAAAAAAAAAAGTTGGTTTCTGCACATTTTACTATTTACTTAGTTA
82757470 TAAATAAAAATGTAAAATGCTTTTCAACGTGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTA
194 TAAATAAAAATGTAAAATGCTTTTCAACGTGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTA
82757535 ACACACTGAAGGTCTCCGGTTCGAGTCCGGGCGAAGCCATCCATACAGAATGTGTTTTGTTTCAT
259 ACACACTGAAGGTCTCCGGTTCGAGTCCGGGCGAAGCCATCCATACAGAATGTGTTTTGTTTCAT
*
82757600 TTTTAATAACCAAAAAAAAAAAGTTGGTTTCTGCACATTTTACTATTTACTT
324 TTTTAATAACCAAAAAAAAAAAATTGGTTTCTGCACATTTTACTATTTACTT
* *
82757652 AGTTATAAATAAAAATGTAAAATGCTTTTCAACGTGGTTTCGTGGTGTAGTTGGTTATCACGTCA
1 AGCTATAAATAAAAATGTAAAATACTTTTCAACGTGGTTTCGTGGTGTAGTTGGTTATCACGTCA
82757717 GTCTAACACACTGAAGGTCTCCGGTTCGAGTCCGGGCGAAGCCATCCATACAGAATGTGTTTTGT
66 GTCTAACACACTGAAGGTCTCCGGTTCGAGTCCGGGCGAAGCCATCCATACAGAATGTGTTTTGT
82757782 TTCATTTTTAATAACCAAAAAAAAAAAAGTTGGTTTCTGCACATTTTACTATTTACTTAGTTATA
131 TTCATTTTTAATAACCAAAAAAAAAAAAGTTGGTTTCTGCACATTTTACTATTTACTTAGTTATA
*
82757847 AATAAAAATGTAAAATGCTTTTCAATGTGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAAC
196 AATAAAAATGTAAAATGCTTTTCAACGTGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAAC
82757912 ACACTGAAGGTCTCCGGTTCGAGTCCGGGCGAAGCCATCCATACAGAATGTGTTTTGTTTCATTT
261 ACACTGAAGGTCTCCGGTTCGAGTCCGGGCGAAGCCATCCATACAGAATGTGTTTTGTTTCATTT
82757977 TTAATAACCAAAAAAAAAAAATTGGTTTCTGCACATTTTACTATTTACTT
326 TTAATAACCAAAAAAAAAAAATTGGTTTCTGCACATTTTACTATTTACTT
82758027 AGCTATAAATAAAAATGTAAAATACTTTTCAACGTGGTTTCGTGGTGTAGTTGGTTATCACGTCA
1 AGCTATAAATAAAAATGTAAAATACTTTTCAACGTGGTTTCGTGGTGTAGTTGGTTATCACGTCA
* * *
82758092 GTCTAACACACTGAAGGTCTCCGGTTCGAGTCCGGGCGAAGCCATCCATGCAGAATATATTTTGT
66 GTCTAACACACTGAAGGTCTCCGGTTCGAGTCCGGGCGAAGCCATCCATACAGAATGTGTTTTGT
82758157 TTCA
131 TTCA
82758161 CAAAGAAAAA
Statistics
Matches: 495, Mismatches: 11, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
374 25 0.05
375 470 0.95
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (375 bp):
AGCTATAAATAAAAATGTAAAATACTTTTCAACGTGGTTTCGTGGTGTAGTTGGTTATCACGTCA
GTCTAACACACTGAAGGTCTCCGGTTCGAGTCCGGGCGAAGCCATCCATACAGAATGTGTTTTGT
TTCATTTTTAATAACCAAAAAAAAAAAAGTTGGTTTCTGCACATTTTACTATTTACTTAGTTATA
AATAAAAATGTAAAATGCTTTTCAACGTGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAAC
ACACTGAAGGTCTCCGGTTCGAGTCCGGGCGAAGCCATCCATACAGAATGTGTTTTGTTTCATTT
TTAATAACCAAAAAAAAAAAATTGGTTTCTGCACATTTTACTATTTACTT
Found at i:82759494 original size:22 final size:22
Alignment explanation
Indices: 82759469--82759512 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
82759459 TCTAATTGAG
*
82759469 TTGGTGTCATGAGTGCTAAGAA
1 TTGGTGTCATGAGTACTAAGAA
82759491 TTGGTGTCATGAGTACTAAGAA
1 TTGGTGTCATGAGTACTAAGAA
82759513 CCAATCTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.30, C:0.09, G:0.30, T:0.32
Consensus pattern (22 bp):
TTGGTGTCATGAGTACTAAGAA
Found at i:82761694 original size:22 final size:22
Alignment explanation
Indices: 82761655--82761713 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
82761645 GTTTTAAGAA
*
82761655 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
82761676 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
82761698 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
82761714 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:82761730 original size:26 final size:24
Alignment explanation
Indices: 82761684--82761743 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
82761674 ATTTGTTTTA
*
82761684 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
82761708 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
82761734 TTTTTTATTT
1 ATATTTATTT
82761744 AATAAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:82761917 original size:16 final size:16
Alignment explanation
Indices: 82761896--82761938 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
82761886 ATTTTACTTG
82761896 GGCCCGGCCCAAACCC
1 GGCCCGGCCCAAACCC
*
82761912 GGCCCGGCCCGAACCC
1 GGCCCGGCCCAAACCC
82761928 GGCCCGGCCCA
1 GGCCCGGCCCA
82761939 TGATCACCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.14, C:0.56, G:0.30, T:0.00
Consensus pattern (16 bp):
GGCCCGGCCCAAACCC
Found at i:82767402 original size:26 final size:26
Alignment explanation
Indices: 82767366--82767415 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
82767356 CCAACGACTA
82767366 AATGCCCAAGAAGTCAATAGCCAAGG
1 AATGCCCAAGAAGTCAATAGCCAAGG
82767392 AATGCCCAAGAAGTCAATAGCCAA
1 AATGCCCAAGAAGTCAATAGCCAA
82767416 TGTGGTGCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.44, C:0.24, G:0.20, T:0.12
Consensus pattern (26 bp):
AATGCCCAAGAAGTCAATAGCCAAGG
Found at i:82779889 original size:18 final size:18
Alignment explanation
Indices: 82779846--82779889 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
82779836 AGTGAAATTT
*
82779846 ATATAAAAATCCCTGAAGA
1 ATAT-AAAATCCCAGAAGA
* *
82779865 ATTTAAAATCCCAGAAGG
1 ATATAAAATCCCAGAAGA
82779883 ATATAAA
1 ATATAAA
82779890 GTTTCTCGGG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 18 0.86
19 3 0.14
ACGTcount: A:0.52, C:0.14, G:0.11, T:0.23
Consensus pattern (18 bp):
ATATAAAATCCCAGAAGA
Found at i:82787287 original size:20 final size:19
Alignment explanation
Indices: 82787251--82787302 Score: 77
Period size: 20 Copynumber: 2.7 Consensus size: 19
82787241 TATCCTCTTA
82787251 CTTCATTTTCCTTTTTCAC
1 CTTCATTTTCCTTTTTCAC
* *
82787270 CTTCATTTTCTTTTTTTCCC
1 CTTCATTTTC-CTTTTTCAC
82787290 CTTCATTTTCCTT
1 CTTCATTTTCCTT
82787303 GACTTTCATC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.08, C:0.31, G:0.00, T:0.62
Consensus pattern (19 bp):
CTTCATTTTCCTTTTTCAC
Found at i:82792342 original size:43 final size:42
Alignment explanation
Indices: 82792221--82792368 Score: 165
Period size: 43 Copynumber: 3.5 Consensus size: 42
82792211 TATGTTATCG
* * * *
82792221 TGTAAGACCACGTCTAGGACATTGGCATCGACT-TATGATTTACG
1 TGTAAGACCATGTCTGGGACA-TGGCATCGA-TATTTGATTT-CA
*
82792265 TGTAAGACCATGCCTGGGACATCGGCATCG-TATTTGATTTCA
1 TGTAAGACCATGTCTGGGACAT-GGCATCGATATTTGATTTCA
* *
82792307 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCATGTCTGGGACA-TGGCATCGATATTTGATTTCA
*
82792350 TGTAAGACAATGTCTGGGA
1 TGTAAGACCATGTCTGGGA
82792369 TGTTGGCATT
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
42 28 0.31
43 37 0.41
44 25 0.28
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATGGCATCGATATTTGATTTCA
Found at i:82794111 original size:47 final size:47
Alignment explanation
Indices: 82793987--82794515 Score: 844
Period size: 47 Copynumber: 11.3 Consensus size: 47
82793977 CCCTTCGGGA
* * *
82793987 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
82794034 C-TATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
82794080 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
82794127 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
82794174 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
82794221 TTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
82794268 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
82794315 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
82794362 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
82794409 TTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
82794456 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
82794503 CTTATCACATATA
1 CTTATCACATATA
82794516 CATATCTTGT
Statistics
Matches: 443, Mismatches: 38, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
46 41 0.09
47 402 0.91
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:82794324 original size:22 final size:22
Alignment explanation
Indices: 82794296--82794371 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
82794286 TTTCACATTC
82794296 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
82794318 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
82794342 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
82794365 ATCACAT
1 ATCACAT
82794372 ATATACACTT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:82803119 original size:44 final size:44
Alignment explanation
Indices: 82803069--82803157 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
82803059 CTCACTGCTG
82803069 AGATTGCTCAATTAATCACCACCTCTTTTTAACTGACCAAAACC
1 AGATTGCTCAATTAATCACCACCTCTTTTTAACTGACCAAAACC
82803113 AGATTGCTCAATTAATCACCACCTCTTTTTAACTGACCAAAACC
1 AGATTGCTCAATTAATCACCACCTCTTTTTAACTGACCAAAACC
82803157 A
1 A
82803158 CCCTATTCTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.35, C:0.29, G:0.07, T:0.29
Consensus pattern (44 bp):
AGATTGCTCAATTAATCACCACCTCTTTTTAACTGACCAAAACC
Found at i:82805671 original size:13 final size:13
Alignment explanation
Indices: 82805653--82805677 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82805643 CGAATTTGTA
82805653 AAAAATAAAAAAT
1 AAAAATAAAAAAT
82805666 AAAAATAAAAAA
1 AAAAATAAAAAA
82805678 ATAACATGTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:82810747 original size:2 final size:2
Alignment explanation
Indices: 82810736--82810771 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
82810726 CCAAAACGTG
*
82810736 TA TA -A TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
82810772 TTTAAATTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:82814805 original size:44 final size:42
Alignment explanation
Indices: 82814610--82814849 Score: 185
Period size: 44 Copynumber: 5.5 Consensus size: 42
82814600 CAGCCTATTA
* * *
82814610 CCCTACTGCTTAGGGGGTTAAGGCCCATCTTCTTTGATCTGTTT
1 CCCTACTGCTTAGGGGGTTAA-GACCTTC-TCTTCGATCTGTTT
* *
82814654 CCCTACTGCTTAGGAGGTTAAGATCTTCATCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGGTTAAGACCTTC-TCTTCGATCTGTTT
* * * * * ** * *
82814697 CCCTACTGCCTAGGGAGATAAGATCTGCAATTCGGTCTGTTA
1 CCCTACTGCTTAGGGGGTTAAGACCTTCTCTTCGATCTGTTT
* * * *
82814739 CCCTACCGATCAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGGTTAAGA-CCTTC-TCTTCGATCTGTTT
* * * *
82814783 CCCTACTGCTTAGGGGGTTAAGATCTGTGAATCTTC-AGCCTGTTA
1 CCCTACTGCTTAGGGGGTTAAGACCT-T--CTCTTCGA-TCTGTTT
*
82814828 CCCTACTGCTCAGGGGGTTAAG
1 CCCTACTGCTTAGGGGGTTAAG
82814850 GCTTATGAAT
Statistics
Matches: 153, Mismatches: 37, Indels: 11
0.76 0.18 0.05
Matches are distributed among these distances:
42 26 0.17
43 45 0.29
44 51 0.33
45 31 0.20
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (42 bp):
CCCTACTGCTTAGGGGGTTAAGACCTTCTCTTCGATCTGTTT
Found at i:82814826 original size:45 final size:44
Alignment explanation
Indices: 82814640--82814849 Score: 182
Period size: 43 Copynumber: 4.8 Consensus size: 44
82814630 AGGCCCATCT
* * *
82814640 TCTTTGATCTGTTTCCCTACTGCTTAGGAGGTTAAGATCTT-CA
1 TCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTGAA
* * *
82814683 TCTTCGATCTGTTTCCCTACTGCCTAGGGAGATAAGATC-TGCAA
1 TCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTG-AA
* * * * * * *
82814727 --TTCGGTCTGTTACCCTACCGATCAGGGGTTTAAGACCCTTCG--
1 TCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGA-TCTT-GAA
82814769 TCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTGAA
1 TCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-TGAA
* * *
82814814 TCTTC-AGCCTGTTACCCTACTGCTCAGGGGGTTAAG
1 TCTTCGA-TCTGTTTCCCTACTGCTTAGGGGGTTAAG
82814850 GCTTATGAAT
Statistics
Matches: 130, Mismatches: 26, Indels: 20
0.74 0.15 0.11
Matches are distributed among these distances:
42 27 0.21
43 38 0.29
44 33 0.25
45 32 0.25
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (44 bp):
TCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTGAA
Found at i:82835746 original size:33 final size:30
Alignment explanation
Indices: 82835686--82835755 Score: 86
Period size: 33 Copynumber: 2.2 Consensus size: 30
82835676 CTAAGAAAAT
*
82835686 ATATATATATATATAAATAATAGTATTAGAA
1 ATATATATATATATAAATAATAATATTA-AA
* *
82835717 ATCATATAGTATATATAACTGATAATATTAAA
1 AT-ATATA-TATATATAAATAATAATATTAAA
82835749 ATATATA
1 ATATATA
82835756 CATAATATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 7 0.21
32 9 0.26
33 18 0.53
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.39
Consensus pattern (30 bp):
ATATATATATATATAAATAATAATATTAAA
Found at i:82835978 original size:3 final size:3
Alignment explanation
Indices: 82835970--82836204 Score: 160
Period size: 3 Copynumber: 76.0 Consensus size: 3
82835960 ACAAGGATAT
82835970 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * ** * *
82836018 ATA ATA ATA ATA ATA ATA TTGA A-A CACA A-A ACC ATT ATA ATA AAA
1 ATA ATA ATA ATA ATA ATA AT-A ATA -ATA ATA ATA ATA ATA ATA ATA
* * * * *
82836063 ATA TTA A-A ATA A-A GTA ATA GA-A ACA TTA CTA CAT- ATA TATA TATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA ATA -ATA -ATA
* * * *
82836108 CATA CATGA AGA TATA CACTA AT- GTA TTTCA ATA ACA ATA ATA ATA ATA
1 -ATA -AT-A ATA -ATA -A-TA ATA ATA -AT-A ATA ATA ATA ATA ATA ATA
82836157 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
82836205 TTGAAATGCA
Statistics
Matches: 190, Mismatches: 25, Indels: 34
0.76 0.10 0.14
Matches are distributed among these distances:
2 10 0.05
3 152 0.80
4 24 0.13
5 4 0.02
ACGTcount: A:0.60, C:0.06, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:82836803 original size:12 final size:12
Alignment explanation
Indices: 82836786--82836816 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
82836776 GTGGTAATTT
82836786 TTTTTTTGTATA
1 TTTTTTTGTATA
82836798 TTTTTTTGTATA
1 TTTTTTTGTATA
82836810 TTTTTTT
1 TTTTTTT
82836817 ATGTTTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.00, G:0.06, T:0.81
Consensus pattern (12 bp):
TTTTTTTGTATA
Found at i:82837236 original size:35 final size:34
Alignment explanation
Indices: 82837183--82837261 Score: 122
Period size: 35 Copynumber: 2.3 Consensus size: 34
82837173 GCAGGTGCGG
* *
82837183 TGGGAGTGTGTGATGGTGCTGGTGGCAGACAGCA
1 TGGGAGAGTGAGATGGTGCTGGTGGCAGACAGCA
*
82837217 TGGGAGAGTGAGAGTGGTGCTGGTGGCAGACAGTA
1 TGGGAGAGTGAGA-TGGTGCTGGTGGCAGACAGCA
82837252 TGGGAGAGTG
1 TGGGAGAGTG
82837262 GGAAGAGGCA
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
34 11 0.27
35 30 0.73
ACGTcount: A:0.20, C:0.09, G:0.49, T:0.22
Consensus pattern (34 bp):
TGGGAGAGTGAGATGGTGCTGGTGGCAGACAGCA
Found at i:82841329 original size:26 final size:26
Alignment explanation
Indices: 82841292--82841400 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
82841282 TGATACAAAT
*
82841292 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82841318 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
82841344 TGATAATGAGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82841370 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82841395 TGATAA
1 TGATAA
82841401 GAATTTCATG
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
25 23 0.29
26 56 0.71
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82845801 original size:23 final size:23
Alignment explanation
Indices: 82845771--82845825 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
82845761 TTTAAATGGA
*
82845771 TGTGTTTGGA-AGGTATATTTGGT
1 TGTGTTTGGAGA-CTATATTTGGT
*
82845794 TGTGTTTGGAGACTATGTTTGGT
1 TGTGTTTGGAGACTATATTTGGT
82845817 TGTGTTTGG
1 TGTGTTTGG
82845826 TGAGTGATAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 28 0.97
24 1 0.03
ACGTcount: A:0.13, C:0.02, G:0.36, T:0.49
Consensus pattern (23 bp):
TGTGTTTGGAGACTATATTTGGT
Found at i:82846892 original size:21 final size:20
Alignment explanation
Indices: 82846862--82846901 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
82846852 AAAAATACGT
82846862 AAAAATAAAAATATAATTTA
1 AAAAATAAAAATATAATTTA
82846882 AAAAGATAAAAATATAATTT
1 AAAA-ATAAAAATATAATTT
82846902 TTTAAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (20 bp):
AAAAATAAAAATATAATTTA
Found at i:82848691 original size:83 final size:82
Alignment explanation
Indices: 82848552--82848704 Score: 209
Period size: 83 Copynumber: 1.9 Consensus size: 82
82848542 TGTAGTTTTG
* ** *
82848552 TTTCTCCAAGCATAAGCTGTGGGCACACCTTAGTCTATGACTTTTTCTACCAATCTTCTTAGTCC
1 TTTCTCCAAGCATAAACCATGGGCACACCCTAGTCTATGACTTTTTCTACCAATCTT-TTAGTCC
82848617 ACAAAAATTCATCCAGCT
65 ACAAAAATTCATCCAGCT
* * * *
82848635 TTTCTCCGAGCATAAACCATGGGCACGCCCTATTCTCTGACTTTTTCTA-CACATCTTTTAGTCC
1 TTTCTCCAAGCATAAACCATGGGCACACCCTAGTCTATGACTTTTTCTACCA-ATCTTTTAGTCC
82848699 ACAAAA
65 ACAAAA
82848705 TACCTAAACT
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
82 15 0.25
83 46 0.75
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (82 bp):
TTTCTCCAAGCATAAACCATGGGCACACCCTAGTCTATGACTTTTTCTACCAATCTTTTAGTCCA
CAAAAATTCATCCAGCT
Found at i:82848982 original size:35 final size:37
Alignment explanation
Indices: 82848942--82849028 Score: 94
Period size: 35 Copynumber: 2.5 Consensus size: 37
82848932 TGTATATAGA
* *
82848942 ATAATACTAATTTATATAAA-TCC-TAATTATCCTAAT
1 ATAATACTAATTAATA-AAATTCCTTAAGTATCCTAAT
*
82848978 -TAATAGT-ATTAATAAAATTCCTTAAGTATCCTAAT
1 ATAATACTAATTAATAAAATTCCTTAAGTATCCTAAT
*
82849013 ATAATTCTAA-TAATAA
1 ATAATACTAATTAATAA
82849029 TCATCCTATA
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
33 3 0.07
34 9 0.21
35 18 0.43
36 11 0.26
37 1 0.02
ACGTcount: A:0.46, C:0.11, G:0.02, T:0.40
Consensus pattern (37 bp):
ATAATACTAATTAATAAAATTCCTTAAGTATCCTAAT
Found at i:82851949 original size:23 final size:23
Alignment explanation
Indices: 82851923--82851975 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
82851913 TTGTAAGATC
*
82851923 ATTTTGTACTTAATTGATTAGTA
1 ATTTTGTACTTAACTGATTAGTA
82851946 ATTTTGTACTTAACTGATTAGTA
1 ATTTTGTACTTAACTGATTAGTA
82851969 ATTTTGT
1 ATTTTGT
82851976 TTTATGGACT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.28, C:0.06, G:0.13, T:0.53
Consensus pattern (23 bp):
ATTTTGTACTTAACTGATTAGTA
Found at i:82855919 original size:16 final size:17
Alignment explanation
Indices: 82855898--82855930 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
82855888 ACCGTTTTCC
82855898 AAAAAGAA-AAGAAAAA
1 AAAAAGAAGAAGAAAAA
82855914 AAAAAGAAGAAGAAAAA
1 AAAAAGAAGAAGAAAAA
82855931 CCAAGAAGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (17 bp):
AAAAAGAAGAAGAAAAA
Found at i:82856549 original size:24 final size:24
Alignment explanation
Indices: 82856522--82856567 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
82856512 CACAAAGATA
82856522 GTCACAATCAATTCAATTTATATT
1 GTCACAATCAATTCAATTTATATT
82856546 GTCACAATCAATTCAATTTATA
1 GTCACAATCAATTCAATTTATA
82856568 ACAAGAGTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.39, C:0.17, G:0.04, T:0.39
Consensus pattern (24 bp):
GTCACAATCAATTCAATTTATATT
Found at i:82858539 original size:3 final size:3
Alignment explanation
Indices: 82858526--82858606 Score: 51
Period size: 3 Copynumber: 27.0 Consensus size: 3
82858516 TACTTGTAAC
* * *
82858526 ATT ATTT ATT ATT A-T ATTT ACT ATT ATT ATT ATT AAT ATT ACT ATT
1 ATT A-TT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT
** * *
82858572 A-T ATTT ATT AAC A-T ATT ATC ATT ATT TTT ATT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
82858607 CATATTAATA
Statistics
Matches: 59, Mismatches: 13, Indels: 12
0.70 0.15 0.14
Matches are distributed among these distances:
2 5 0.08
3 47 0.80
4 7 0.12
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:82858545 original size:12 final size:12
Alignment explanation
Indices: 82858528--82858612 Score: 63
Period size: 12 Copynumber: 7.3 Consensus size: 12
82858518 CTTGTAACAT
82858528 TATTTATTATTA
1 TATTTATTATTA
*
82858540 TATTTACTA-T-
1 TATTTATTATTA
82858550 TA-TTATTATTA
1 TATTTATTATTA
*
82858561 -ATATTACTATTA
1 TAT-TTATTATTA
**
82858573 TATTTATTAACA
1 TATTTATTATTA
*
82858585 TA-TTATCATTA
1 TATTTATTATTA
*
82858596 TTTTTATTATTCA
1 TATTTATTATT-A
82858609 TATT
1 TATT
82858613 AATATATATA
Statistics
Matches: 54, Mismatches: 12, Indels: 13
0.68 0.15 0.16
Matches are distributed among these distances:
9 5 0.09
10 4 0.07
11 8 0.15
12 31 0.57
13 6 0.11
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (12 bp):
TATTTATTATTA
Found at i:82858557 original size:21 final size:21
Alignment explanation
Indices: 82858526--82858604 Score: 74
Period size: 21 Copynumber: 3.6 Consensus size: 21
82858516 TACTTGTAAC
82858526 ATTATTTATTATT-ATATTTACT
1 ATTA-TTATTATTAATA-TTACT
82858548 ATTATTATTATTAATATTACT
1 ATTATTATTATTAATATTACT
82858569 ATTA-TATTTATTAACATATTA-T
1 ATTATTA-TTATT-A-ATATTACT
*
82858591 CATTATTTTTATTA
1 -ATTATTATTATTA
82858605 TTCATATTAA
Statistics
Matches: 50, Mismatches: 1, Indels: 12
0.79 0.02 0.19
Matches are distributed among these distances:
20 2 0.04
21 22 0.44
22 10 0.20
23 15 0.30
24 1 0.02
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTATTATTATTAATATTACT
Found at i:82860367 original size:34 final size:34
Alignment explanation
Indices: 82860327--82860397 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
82860317 TTTTCTGATT
82860327 TTCGTAGACCAAAAAATTATCATTTTAGTAAATC
1 TTCGTAGACCAAAAAATTATCATTTTAGTAAATC
82860361 TTCGTAGACCAAAAAATTATCATTTTAGTAAATC
1 TTCGTAGACCAAAAAATTATCATTTTAGTAAATC
82860395 TTC
1 TTC
82860398 ACTTTTATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.37
Consensus pattern (34 bp):
TTCGTAGACCAAAAAATTATCATTTTAGTAAATC
Found at i:82871749 original size:87 final size:87
Alignment explanation
Indices: 82871652--82871857 Score: 315
Period size: 87 Copynumber: 2.4 Consensus size: 87
82871642 CAGATTGAAG
* * ***
82871652 ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGACGATTTTTAAACCCCT
1 ATTTATAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGACGAGCCTTAAACCCCT
82871717 AAGCAGTAGGGTAACAGGCTAA
66 AAGCAGTAGGGTAACAGGCTAA
* * *
82871739 ATTTATAGATCTTAACCTCCTAAGCAGTAGGGAAACAGATCGAAGGTGATGAGCCTTAAACCCCT
1 ATTTATAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGACGAGCCTTAAACCCCT
82871804 AAGCAGTAGGGTAACAGGCTAA
66 AAGCAGTAGGGTAACAGGCTAA
*
82871826 ATTT-TCAGATCTTAAACCCCTAAGCAGTAGGG
1 ATTTAT-AGATCTTAACCCCCTAAGCAGTAGGG
82871858 TAACGGGCTA
Statistics
Matches: 108, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
86 1 0.01
87 107 0.99
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.23
Consensus pattern (87 bp):
ATTTATAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGACGAGCCTTAAACCCCT
AAGCAGTAGGGTAACAGGCTAA
Found at i:82871776 original size:43 final size:43
Alignment explanation
Indices: 82871652--82871906 Score: 250
Period size: 43 Copynumber: 5.9 Consensus size: 43
82871642 CAGATTGAAG
* * **
82871652 ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATTGAA
1 ATTTATAGATCTTAAACCCCTAAGCAGTAGGGAAACAGGCT-AA
* * * *
82871696 GA-TGA-CGATTTTTAAACCCCTAAGCAGTAGGGTAACAGGCTAA
1 -ATTTATAGA-TCTTAAACCCCTAAGCAGTAGGGAAACAGGCTAA
* *
82871739 ATTTATAGATCTT-AACCTCCTAAGCAGTAGGGAAACAGATCGAA
1 ATTTATAGATCTTAAACC-CCTAAGCAGTAGGGAAACAG-GCTAA
** * * *
82871783 GGTGAT-GAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAA
1 ATTTATAGA-TCTTAAACCCCTAAGCAGTAGGGAAACAGGCTAA
* *
82871826 ATTT-TCAGATCTTAAACCCCTAAGCAGTAGGGTAACGGGCTAA
1 ATTTAT-AGATCTTAAACCCCTAAGCAGTAGGGAAACAGGCTAA
*
82871869 ATTTACAGATCTTAAACCCCTAAGCAGTAGGGAAACAG
1 ATTTATAGATCTTAAACCCCTAAGCAGTAGGGAAACAG
82871907 ATCAATGATG
Statistics
Matches: 172, Mismatches: 28, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
42 6 0.03
43 100 0.58
44 61 0.35
45 5 0.03
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (43 bp):
ATTTATAGATCTTAAACCCCTAAGCAGTAGGGAAACAGGCTAA
Found at i:82871896 original size:130 final size:129
Alignment explanation
Indices: 82871707--82871950 Score: 402
Period size: 130 Copynumber: 1.9 Consensus size: 129
82871697 ATGACGATTT
*
82871707 TTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTATAGATCTTAACCTCCTAAGCAGTAGGGA
1 TTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCTCCTAAGCAGTAGGGA
* **
82871772 AACAGATCGAA-GGTGATGAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTTCAGAT
66 AACAGATC-AATGATGACAAGCCTT-AACCCCTAAGCAGTAGGGTAACAGGCTAAATTTTCAGAT
82871836 C
129 C
*
82871837 TTAAACCCCTAAGCAGTAGGGTAACGGGCTAAATTTACAGATCTTAAACC-CCTAAGCAGTAGGG
1 TTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTT-AACCTCCTAAGCAGTAGGG
82871901 AAACAGATCAATGATGACAAGCCTTAACCCCTAAGCAGTAGGGTAACAGG
65 AAACAGATCAATGATGACAAGCCTTAACCCCTAAGCAGTAGGGTAACAGG
82871951 TTGAAAATCA
Statistics
Matches: 107, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
129 27 0.25
130 76 0.71
131 4 0.04
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (129 bp):
TTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCTCCTAAGCAGTAGGGA
AACAGATCAATGATGACAAGCCTTAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTTCAGATC
Found at i:82871930 original size:43 final size:42
Alignment explanation
Indices: 82871656--82871949 Score: 240
Period size: 43 Copynumber: 6.8 Consensus size: 42
82871646 TTGAAGATTT
* *
82871656 ACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGA-TG
1 ACAGATCTTAAACCCCTAAGCAGTAGGGTAACAGA-T-AA-ATTG
* * *
82871700 AC-GATTTTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTT
1 ACAGA-TCTTAAACCCCTAAGCAGTAGGGTAACA-GATAAATTG
* * **
82871743 ATAGATCTT-AACCTCCTAAGCAGTAGGGAAACAGATCGAAGGTG
1 ACAGATCTTAAACC-CCTAAGCAGTAGGGTAACAGAT--AAATTG
* * * *
82871787 A-TGAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTT
1 ACAGA-TCTTAAACCCCTAAGCAGTAGGGTAACA-GATAAATTG
* * * *
82871830 TCAGATCTTAAACCCCTAAGCAGTAGGGTAACGGGCTAAATTT
1 ACAGATCTTAAACCCCTAAGCAGTAGGGTAAC-AGATAAATTG
* *
82871873 ACAGATCTTAAACCCCTAAGCAGTAGGGAAACAGATCAATGATG
1 ACAGATCTTAAACCCCTAAGCAGTAGGGTAACAGATAAAT--TG
*
82871917 ACA-AGCCTT-AACCCCTAAGCAGTAGGGTAACAG
1 ACAGA-TCTTAAACCCCTAAGCAGTAGGGTAACAG
82871950 GTTGAAAATC
Statistics
Matches: 204, Mismatches: 31, Indels: 31
0.77 0.12 0.12
Matches are distributed among these distances:
42 12 0.06
43 121 0.59
44 64 0.31
45 7 0.03
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (42 bp):
ACAGATCTTAAACCCCTAAGCAGTAGGGTAACAGATAAATTG
Found at i:82871968 original size:130 final size:130
Alignment explanation
Indices: 82871662--82871968 Score: 388
Period size: 130 Copynumber: 2.4 Consensus size: 130
82871652 ATTTACAGAT
* * * * * *
82871662 CTTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGACGAT-TTTTAAACCCCTAAGCAGTAG
1 CTTAA-CCCCTAAGCAGTAGGGTAACAGGTTGAAAATCA-AATATCTTAAACCCCTAAGCAGTAG
* * **
82871726 GGTAACAGGCTAAATTTATAGATCTTAACCTCCTAAGCAGTAGGGAAACAGATCGAAGGTGATGA
64 GGTAACAGGCTAAATTTACAGATCTTAACCTCCTAAGCAGTAGGGAAACAGATCGAAGATGACAA
82871791 GC
129 GC
* * *** *
82871793 CTTAAACCCCTAAGCAGTAGGGTAACAGGCT-AAATTTTCAGATCTTAAACCCCTAAGCAGTAGG
1 CTT-AACCCCTAAGCAGTAGGGTAACAGGTTGAAAATCAAATATCTTAAACCCCTAAGCAGTAGG
*
82871857 GTAACGGGCTAAATTTACAGATCTTAAACC-CCTAAGCAGTAGGGAAACAGATC-AATGATGACA
65 GTAACAGGCTAAATTTACAGATCTT-AACCTCCTAAGCAGTAGGGAAACAGATCGAA-GATGACA
82871920 AGC
128 AGC
82871923 CTTAACCCCTAAGCAGTAGGGTAACAGGTTGAAAATCAAATATCTT
1 CTTAACCCCTAAGCAGTAGGGTAACAGGTTGAAAATCAAATATCTT
82871969 CTCCCTGAAA
Statistics
Matches: 150, Mismatches: 21, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
129 29 0.19
130 90 0.60
131 29 0.19
132 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.22
Consensus pattern (130 bp):
CTTAACCCCTAAGCAGTAGGGTAACAGGTTGAAAATCAAATATCTTAAACCCCTAAGCAGTAGGG
TAACAGGCTAAATTTACAGATCTTAACCTCCTAAGCAGTAGGGAAACAGATCGAAGATGACAAGC
Found at i:82872047 original size:41 final size:42
Alignment explanation
Indices: 82871997--82872076 Score: 126
Period size: 41 Copynumber: 1.9 Consensus size: 42
82871987 GAGCAGCTAA
*
82871997 AAGCCACAGCAGATCTCCTTGAAGTTTCAGTGG-ATTAAGCG
1 AAGCCACAGCAGATCTCCTAGAAGTTTCAGTGGAATTAAGCG
* *
82872038 AAGCTACAGCAGGTCTCCTAGAAGTTTCAGTGGAATTAA
1 AAGCCACAGCAGATCTCCTAGAAGTTTCAGTGGAATTAA
82872077 TGGAAGTCAC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
41 30 0.86
42 5 0.14
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (42 bp):
AAGCCACAGCAGATCTCCTAGAAGTTTCAGTGGAATTAAGCG
Found at i:82873375 original size:3 final size:3
Alignment explanation
Indices: 82873362--82873442 Score: 51
Period size: 3 Copynumber: 27.0 Consensus size: 3
82873352 TACTTGTAAC
* * *
82873362 ATT ATTT ATT ATT A-T ATTT ACT ATT ATT ATT ATT AAT ATT ACT ATT
1 ATT A-TT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT
** * *
82873408 A-T ATTT ATT AAC A-T ATT ATC ATT ATT TTT ATT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
82873443 TATATTAATA
Statistics
Matches: 59, Mismatches: 13, Indels: 12
0.70 0.15 0.14
Matches are distributed among these distances:
2 5 0.08
3 47 0.80
4 7 0.12
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:82873381 original size:12 final size:12
Alignment explanation
Indices: 82873364--82873448 Score: 63
Period size: 12 Copynumber: 7.3 Consensus size: 12
82873354 CTTGTAACAT
82873364 TATTTATTATTA
1 TATTTATTATTA
*
82873376 TATTTACTA-T-
1 TATTTATTATTA
82873386 TA-TTATTATTA
1 TATTTATTATTA
*
82873397 -ATATTACTATTA
1 TAT-TTATTATTA
**
82873409 TATTTATTAACA
1 TATTTATTATTA
*
82873421 TA-TTATCATTA
1 TATTTATTATTA
*
82873432 TTTTTATTATTTA
1 TATTTATTA-TTA
82873445 TATT
1 TATT
82873449 AATATATATA
Statistics
Matches: 54, Mismatches: 12, Indels: 13
0.68 0.15 0.16
Matches are distributed among these distances:
9 5 0.09
10 4 0.07
11 8 0.15
12 29 0.54
13 8 0.15
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (12 bp):
TATTTATTATTA
Found at i:82873393 original size:21 final size:21
Alignment explanation
Indices: 82873362--82873440 Score: 74
Period size: 21 Copynumber: 3.6 Consensus size: 21
82873352 TACTTGTAAC
82873362 ATTATTTATTATT-ATATTTACT
1 ATTA-TTATTATTAATA-TTACT
82873384 ATTATTATTATTAATATTACT
1 ATTATTATTATTAATATTACT
82873405 ATTA-TATTTATTAACATATTA-T
1 ATTATTA-TTATT-A-ATATTACT
*
82873427 CATTATTTTTATTA
1 -ATTATTATTATTA
82873441 TTTATATTAA
Statistics
Matches: 50, Mismatches: 1, Indels: 12
0.79 0.02 0.19
Matches are distributed among these distances:
20 2 0.04
21 22 0.44
22 10 0.20
23 15 0.30
24 1 0.02
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTATTATTATTAATATTACT
Found at i:82877779 original size:21 final size:21
Alignment explanation
Indices: 82877754--82877793 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
82877744 TTGGAGTTAA
82877754 AGAATGAGAAGCTGAGATTGG
1 AGAATGAGAAGCTGAGATTGG
82877775 AGAATGAGAAGCTGAGATT
1 AGAATGAGAAGCTGAGATT
82877794 AGAATTAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.05, G:0.35, T:0.20
Consensus pattern (21 bp):
AGAATGAGAAGCTGAGATTGG
Found at i:82877804 original size:21 final size:20
Alignment explanation
Indices: 82877754--82877808 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 20
82877744 TTGGAGTTAA
82877754 AGAATGAGAAGCTGAGATTGG
1 AGAATGAGAAGCTGAGATT-G
82877775 AGAATGAGAAGCTGAGATT-
1 AGAATGAGAAGCTGAGATTG
82877794 AGAATTAGAGAAGCT
1 AGAA-T-GAGAAGCT
82877809 CAAAATGCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.12
20 1 0.03
21 27 0.84
ACGTcount: A:0.42, C:0.05, G:0.33, T:0.20
Consensus pattern (20 bp):
AGAATGAGAAGCTGAGATTG
Found at i:82877804 original size:27 final size:25
Alignment explanation
Indices: 82877727--82877805 Score: 76
Period size: 27 Copynumber: 3.2 Consensus size: 25
82877717 TTGTTGCACC
* *
82877727 AGAATGAGAGGCTGAGATTGGAGTTAA
1 AGAATGAGAAGCTGAGATT-GA-TTAG
82877754 AGAATGAGAAGCTGAGATTG----G
1 AGAATGAGAAGCTGAGATTGATTAG
82877775 AGAATGAGAAGCTGAGATTAGAATTAG
1 AGAATGAGAAGCTGAGATT-G-ATTAG
82877802 AGAA
1 AGAA
82877806 GCTCAAAATG
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
21 19 0.43
22 1 0.02
26 1 0.02
27 23 0.52
ACGTcount: A:0.42, C:0.04, G:0.34, T:0.20
Consensus pattern (25 bp):
AGAATGAGAAGCTGAGATTGATTAG
Found at i:82879640 original size:20 final size:20
Alignment explanation
Indices: 82879614--82879665 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 20
82879604 TTTTTACTTG
*
82879614 AAAAAAACTAAAATTAATTCT
1 AAAAAAA-TAAAATAAATTCT
82879635 AAAAAAATAAAATAAA-T-T
1 AAAAAAATAAAATAAATTCT
*
82879653 AAAAAGATAAAAT
1 AAAAAAATAAAAT
82879666 GAATGACCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 13 0.45
19 1 0.03
20 8 0.28
21 7 0.24
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.23
Consensus pattern (20 bp):
AAAAAAATAAAATAAATTCT
Found at i:82881538 original size:26 final size:25
Alignment explanation
Indices: 82881457--82881649 Score: 117
Period size: 26 Copynumber: 7.6 Consensus size: 25
82881447 AACGAAACAA
* * *
82881457 AATAATATATAAAACAATTTGAAGT
1 AATAATATATAAAACAACTTAAAAT
*
82881482 -A-AATAGTATAAAACAATTTAAAAT
1 AATAATA-TATAAAACAACTTAAAAT
* * *
82881506 ACGTAATATGTAAAACAAGTTAAAATT
1 A-ATAATATATAAAACAACTTAAAA-T
* *
82881533 AATAATATACAAAGCAACTTAAAAT
1 AATAATATATAAAACAACTTAAAAT
* * *
82881558 AATAATATATAAAGCACCTT---AC
1 AATAATATATAAAACAACTTAAAAT
* * * *
82881580 AATAACATATAAAAGAATTTAAGAT
1 AATAATATATAAAACAACTTAAAAT
* *
82881605 AAATAATATATAAAAAGAAATTTAAAAT
1 -AATAATATAT-AAAA-CAACTTAAAAT
*
82881633 AAATAATATACAAAACA
1 -AATAATATATAAAACA
82881650 GTTTTTTTTA
Statistics
Matches: 133, Mismatches: 24, Indels: 21
0.75 0.13 0.12
Matches are distributed among these distances:
22 16 0.12
23 4 0.03
24 17 0.13
25 20 0.15
26 43 0.32
27 14 0.11
28 19 0.14
ACGTcount: A:0.60, C:0.07, G:0.06, T:0.27
Consensus pattern (25 bp):
AATAATATATAAAACAACTTAAAAT
Found at i:82881566 original size:25 final size:25
Alignment explanation
Indices: 82881525--82881646 Score: 97
Period size: 25 Copynumber: 4.8 Consensus size: 25
82881515 GTAAAACAAG
82881525 TTAAAATTAATAATATACAAAGCAAC
1 TTAAAA-TAATAATATACAAAGCAAC
* *
82881551 TTAAAATAATAATATATAAAGCACC
1 TTAAAATAATAATATACAAAGCAAC
* * *
82881576 TTACAATAA-CATATA-AAAG-AAT
1 TTAAAATAATAATATACAAAGCAAC
* * * *
82881598 TTAAGATAAATAATATATAAAAAGAAAT
1 TTAAAAT-AAT-A-ATATACAAAGCAAC
82881626 TTAAAATAAATAATATACAAA
1 TTAAAAT-AATAATATACAAA
82881647 ACAGTTTTTT
Statistics
Matches: 79, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
22 6 0.08
23 6 0.08
24 5 0.06
25 25 0.32
26 19 0.24
27 5 0.06
28 13 0.16
ACGTcount: A:0.61, C:0.07, G:0.04, T:0.28
Consensus pattern (25 bp):
TTAAAATAATAATATACAAAGCAAC
Found at i:82881635 original size:28 final size:27
Alignment explanation
Indices: 82881580--82881745 Score: 101
Period size: 26 Copynumber: 6.0 Consensus size: 27
82881570 AGCACCTTAC
* *
82881580 AATAACATAT-AAAAGAATTTAAGATA
1 AATAATATATAAAAAGAATTTAAAATA
82881606 AATAATATATAAAAAGAAATTTAAAATA
1 AATAATATATAAAAAG-AATTTAAAATA
* **
82881634 AATAATATACAAAACAGTTTTTTTTAAAA-A
1 AATAATATATAAAA-AG---AATTTAAAATA
* *
82881664 GGAT-ATATATAAAAAATAATAATTCAAAATA
1 -AATAATATAT-AAAAAGAAT--TT-AAAATA
* *
82881695 AATATTATATATAATAG--TTTAAAATA
1 AATAATATATA-AAAAGAATTTAAAATA
*
82881721 AATAATATAGAAAAA-AATTTAAAAT
1 AATAATATATAAAAAGAATTTAAAAT
82881746 GGATAATAGT
Statistics
Matches: 107, Mismatches: 18, Indels: 30
0.69 0.12 0.19
Matches are distributed among these distances:
25 3 0.03
26 32 0.30
27 8 0.07
28 23 0.21
29 5 0.05
30 14 0.13
31 22 0.21
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (27 bp):
AATAATATATAAAAAGAATTTAAAATA
Found at i:82881727 original size:43 final size:43
Alignment explanation
Indices: 82881677--82881770 Score: 104
Period size: 43 Copynumber: 2.2 Consensus size: 43
82881667 TATATATAAA
* *
82881677 AAATAATAATTCAAAATAAATATT-ATAT-ATAATAGTTTAAAAT
1 AAATAATAATACAAAA-AAAT-TTAAAATGATAATAGTTTAAAAT
*
82881720 AAATAAT-ATAGAAAAAAATTTAAAATGGATAATAGTTTAAAAT
1 AAATAATAATACAAAAAAATTTAAAAT-GATAATAGTTTAAAAT
*
82881763 ACATAATA
1 AAATAATA
82881771 TGTGAAAAAC
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
40 2 0.05
41 7 0.16
42 6 0.14
43 28 0.65
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (43 bp):
AAATAATAATACAAAAAAATTTAAAATGATAATAGTTTAAAAT
Found at i:82889331 original size:40 final size:39
Alignment explanation
Indices: 82889254--82889335 Score: 101
Period size: 40 Copynumber: 2.1 Consensus size: 39
82889244 TAACGATTTA
* *
82889254 TCGGCTAAAATGACACTTAGTGTGCAGTTCGAAATAGCT
1 TCGGCTAAAATGACACTTAGTGTACAATTCGAAATAGCT
* * * *
82889293 TCGGCTAAAAGTGGCACTTGGTGTACAATTTGAGATAGCT
1 TCGGCTAAAA-TGACACTTAGTGTACAATTCGAAATAGCT
82889333 TCG
1 TCG
82889336 ACTATATATA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
39 10 0.28
40 26 0.72
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (39 bp):
TCGGCTAAAATGACACTTAGTGTACAATTCGAAATAGCT
Found at i:82889391 original size:28 final size:28
Alignment explanation
Indices: 82889350--82889450 Score: 87
Period size: 28 Copynumber: 3.6 Consensus size: 28
82889340 TATATATATA
*
82889350 AATGGCTCTTAGTGTGCAAAGTATCGAG
1 AATGGCACTTAGTGTGCAAAGTATCGAG
* * *
82889378 GATGGCACTTAGTGTGCGAAA-CATCTAG
1 AATGGCACTTAGTGTGC-AAAGTATCGAG
* * * *
82889406 AATAGCACTTAGCGTGCGAGGTATCGAG
1 AATGGCACTTAGTGTGCAAAGTATCGAG
* * *
82889434 TATGGTACATAGTGTGC
1 AATGGCACTTAGTGTGC
82889451 GAGACATCGA
Statistics
Matches: 55, Mismatches: 16, Indels: 4
0.73 0.21 0.05
Matches are distributed among these distances:
27 1 0.02
28 51 0.93
29 3 0.05
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.27
Consensus pattern (28 bp):
AATGGCACTTAGTGTGCAAAGTATCGAG
Found at i:82889459 original size:28 final size:28
Alignment explanation
Indices: 82889372--82889465 Score: 89
Period size: 28 Copynumber: 3.4 Consensus size: 28
82889362 TGTGCAAAGT
* *
82889372 ATCGAGGATGGCACTTAGTGTGCGAAAC
1 ATCGAGTATGGCACTTAGTGTGCGAGAC
* * * * **
82889400 ATCTAGAATAGCACTTAGCGTGCGAGGT
1 ATCGAGTATGGCACTTAGTGTGCGAGAC
* *
82889428 ATCGAGTATGGTACATAGTGTGCGAGAC
1 ATCGAGTATGGCACTTAGTGTGCGAGAC
*
82889456 ATCGAATATG
1 ATCGAGTATG
82889466 CAACGACATT
Statistics
Matches: 50, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
28 50 1.00
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.24
Consensus pattern (28 bp):
ATCGAGTATGGCACTTAGTGTGCGAGAC
Found at i:82894258 original size:26 final size:26
Alignment explanation
Indices: 82894219--82894274 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
82894209 TGAAATGCCC
*
82894219 ATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCCATT
*
82894245 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
82894271 ATCA
1 ATCA
82894275 ATTTGTACCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:82897717 original size:35 final size:35
Alignment explanation
Indices: 82897678--82897748 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
82897668 AACGTAACTC
82897678 CATCAGATCTCCAGGGAAAATCCTACCTTGAGTTT
1 CATCAGATCTCCAGGGAAAATCCTACCTTGAGTTT
82897713 CATCAGATCTCCAGGGAAAATCCTACCTTGAGTTT
1 CATCAGATCTCCAGGGAAAATCCTACCTTGAGTTT
82897748 C
1 C
82897749 TAAGGGTACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (35 bp):
CATCAGATCTCCAGGGAAAATCCTACCTTGAGTTT
Found at i:82901231 original size:26 final size:26
Alignment explanation
Indices: 82901200--82901281 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
82901190 TGAAATGCCC
*
82901200 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
82901226 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
82901252 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
82901278 ATCA
1 ATCA
82901282 ATACCATGAA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:82904982 original size:15 final size:16
Alignment explanation
Indices: 82904965--82905027 Score: 67
Period size: 15 Copynumber: 3.9 Consensus size: 16
82904955 TTAATATTAT
82904965 TTAATATTATTATAT-
1 TTAATATTATTATATA
*
82904980 TTACTATTATT-TATA
1 TTAATATTATTATATA
* *
82904995 TTATTCTTATTATTATTA
1 TTAATATTATTA-TA-TA
82905013 TTAATATTATTATAT
1 TTAATATTATTATAT
82905028 GTTTTATTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
14 3 0.08
15 19 0.49
16 1 0.03
17 4 0.10
18 12 0.31
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (16 bp):
TTAATATTATTATATA
Found at i:82905035 original size:15 final size:15
Alignment explanation
Indices: 82904962--82905041 Score: 58
Period size: 15 Copynumber: 5.2 Consensus size: 15
82904952 CTTTTAATAT
*
82904962 TATTTAATATTATTA
1 TATTTATTATTATTA
*
82904977 TATTTACTATTATT-
1 TATTTATTATTATTA
*
82904991 TATATTATTCTTATTA
1 TAT-TTATTATTATTA
*
82905007 TTATTATTAATATTATTA
1 -TA-T-TTATTATTATTA
82905025 TATGTT-TTATTA-TA
1 TAT-TTATTATTATTA
82905039 TAT
1 TAT
82905042 GTATATATCT
Statistics
Matches: 54, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
14 8 0.15
15 27 0.50
16 3 0.06
17 4 0.07
18 12 0.22
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (15 bp):
TATTTATTATTATTA
Found at i:82905037 original size:3 final size:3
Alignment explanation
Indices: 82904959--82905025 Score: 57
Period size: 3 Copynumber: 22.0 Consensus size: 3
82904949 TTACTTTTAA
* * *
82904959 TAT TATT TAA TAT TAT TA- TATT TAC TAT TAT T-T ATAT TAT TCT TAT
1 TAT TA-T TAT TAT TAT TAT TA-T TAT TAT TAT TAT -TAT TAT TAT TAT
*
82905005 TAT TAT TAT TAA TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT
82905026 ATGTTTTATT
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
2 3 0.06
3 42 0.82
4 6 0.12
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:82905159 original size:24 final size:26
Alignment explanation
Indices: 82905127--82905390 Score: 128
Period size: 25 Copynumber: 10.2 Consensus size: 26
82905117 CTAATATGTA
82905127 TATATTATGTA-A-ATATTTTAATAC
1 TATATTATGTATACATATTTTAATAC
*
82905151 TATATTATGTATACAT-TTTTTATA-
1 TATATTATGTATACATATTTTAATAC
* *
82905175 TATATTACGTATATATATCTTTTAAATAC
1 TATATTATGTATACATA--TTTT-AATAC
* *
82905204 TATATTTTTTAATACTATATTATTTATATA-
1 TATATTATGT-ATAC-ATA-T-TTTA-ATAC
* * *
82905234 TATATATATATATATATATTTTACATAT
1 TATAT-TATGTATACATATTTTA-ATAC
* **
82905262 TATCTTATGTATTTAT-TTTTAATAAC
1 TATATTATGTATACATATTTTAAT-AC
** **
82905288 TATATTATGTATGTAT-TTTTAACGC
1 TATATTATGTATACATATTTTAATAC
82905313 TATATTATG--TACATATTTTTAATAC
1 TATATTATGTATACATA-TTTTAATAC
* * *
82905338 TAT-GTA--TATAC-T-TTTTATTCC
1 TATATTATGTATACATATTTTAATAC
82905359 TATTATTATGTAT--ATATTTTAATAC
1 TA-TATTATGTATACATATTTTAATAC
82905384 ATATATT
1 -TATATT
82905391 TATATATTTA
Statistics
Matches: 184, Mismatches: 31, Indels: 49
0.70 0.12 0.19
Matches are distributed among these distances:
21 9 0.05
22 1 0.01
23 6 0.03
24 31 0.17
25 44 0.24
26 30 0.16
27 20 0.11
28 8 0.04
29 10 0.05
30 13 0.07
31 12 0.07
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (26 bp):
TATATTATGTATACATATTTTAATAC
Found at i:82905213 original size:16 final size:16
Alignment explanation
Indices: 82905188--82905238 Score: 61
Period size: 15 Copynumber: 3.3 Consensus size: 16
82905178 ATTACGTATA
*
82905188 TATATCTTTTAAATAC
1 TATATTTTTTAAATAC
82905204 TATATTTTTT-AATAC
1 TATATTTTTTAAATAC
* *
82905219 TATATTATTTATATA-
1 TATATTTTTTAAATAC
82905234 TATAT
1 TATAT
82905239 ATATATATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
15 19 0.61
16 12 0.39
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (16 bp):
TATATTTTTTAAATAC
Found at i:82905235 original size:2 final size:2
Alignment explanation
Indices: 82905219--82905252 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
82905209 TTTTTAATAC
*
82905219 TA TA T- TA TT TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
82905253 TTTACATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (2 bp):
TA
Found at i:82905393 original size:26 final size:26
Alignment explanation
Indices: 82905125--82905393 Score: 77
Period size: 26 Copynumber: 10.3 Consensus size: 26
82905115 TTCTAATATG
*
82905125 TATATATTATGTAAATATTTTAATAC-
1 TATAT-TTATGTATATATTTTAATACA
* * *
82905151 TATA-TTATGTATACATTTT-TTATA
1 TATATTTATGTATATATTTTAATACA
* *
82905175 TATATTACGTATATATATCTTTTAAATAC-
1 TATATT---TATGTATATATTTT-AATACA
* * * *
82905204 TATATTTTTTAATACTATATTATTTATATA
1 TATA-TTTAT-GTA-TATATT-TTAATACA
* *
82905234 TATATATATATATATATATTT--TACA
1 TATATTTATGTATATAT-TTTAATACA
*
82905259 TATTATCTTATGTATTTATTTTTAATA-A
1 TA-TAT-TTATGTATATA-TTTTAATACA
* * *
82905287 CTATA-TTATGTATGTATTTTTA-ACGC
1 -TATATTTATGTATATATTTTAATAC-A
*
82905313 TATA-TTATGTACATATTTT--T--A
1 TATATTTATGTATATATTTTAATACA
* * * *
82905334 -ATA-CTATGTATATACTTTTTATTCC
1 TATATTTATGTATATA-TTTTAATACA
82905359 TAT-TATTATGTATATATTTTAATACA
1 TATAT-TTATGTATATATTTTAATACA
82905385 TATATTTAT
1 TATATTTAT
82905394 ATATTTATAT
Statistics
Matches: 180, Mismatches: 32, Indels: 62
0.66 0.12 0.23
Matches are distributed among these distances:
20 12 0.07
21 4 0.02
23 3 0.02
24 18 0.10
25 28 0.16
26 33 0.18
27 31 0.17
28 22 0.12
29 19 0.11
30 10 0.06
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (26 bp):
TATATTTATGTATATATTTTAATACA
Found at i:82905412 original size:22 final size:21
Alignment explanation
Indices: 82905363--82905412 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
82905353 TATTCCTATT
*
82905363 ATTATGTATATATTTTAATAC
1 ATTATTTATATATTTTAATAC
82905384 ATATATTTATATA-TTTATATATC
1 AT-TATTTATATATTTTA-ATA-C
82905407 ATTATT
1 ATTATT
82905413 ATTAGTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 6 0.24
22 16 0.64
23 3 0.12
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (21 bp):
ATTATTTATATATTTTAATAC
Found at i:82908756 original size:7 final size:7
Alignment explanation
Indices: 82908744--82908769 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
82908734 AGTATAGAGA
82908744 TTAAATT
1 TTAAATT
82908751 TTAAATT
1 TTAAATT
82908758 TTAAATT
1 TTAAATT
82908765 TTAAA
1 TTAAA
82908770 GAGTACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (7 bp):
TTAAATT
Found at i:82909627 original size:26 final size:26
Alignment explanation
Indices: 82909590--82909673 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
82909580 TGATACAAAT
* *
82909590 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
82909616 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
82909642 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
82909668 TGATAA
1 TGATAA
82909674 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:82911177 original size:26 final size:26
Alignment explanation
Indices: 82911148--82911200 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
82911138 TTTACAATTT
82911148 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
82911174 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
82911200 T
1 T
82911201 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:82911750 original size:25 final size:26
Alignment explanation
Indices: 82911693--82911827 Score: 211
Period size: 26 Copynumber: 5.2 Consensus size: 26
82911683 TGATACAAAT
82911693 TGATAAATAGGTTAGGTAAATGTTCCA
1 TGAT-AATAGGTTAGGTAAATGTTCCA
82911720 TGATAATAGGTTAGGTAAATG-TCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
82911745 TGATAATAGGTTAGGTAAAT-TTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
82911770 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
82911796 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
82911822 TGATAA
1 TGATAA
82911828 GAATTTCATG
Statistics
Matches: 104, Mismatches: 2, Indels: 5
0.94 0.02 0.05
Matches are distributed among these distances:
25 47 0.45
26 53 0.51
27 4 0.04
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:82917571 original size:26 final size:25
Alignment explanation
Indices: 82917512--82917597 Score: 149
Period size: 25 Copynumber: 3.5 Consensus size: 25
82917502 TGATACAAAT
82917512 TGATAATAGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
82917537 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
82917563 TGATAATAGGTTAGGTAAATG-T-A
1 TGATAATAGGTTAGGTAAATGTTCA
82917586 TGATAATAGGTT
1 TGATAATAGGTT
82917598 CCATGATAAT
Statistics
Matches: 60, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
23 13 0.22
25 24 0.40
26 23 0.38
ACGTcount: A:0.36, C:0.03, G:0.24, T:0.36
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:82917628 original size:26 final size:26
Alignment explanation
Indices: 82917599--82917658 Score: 120
Period size: 26 Copynumber: 2.3 Consensus size: 26
82917589 TAATAGGTTC
82917599 CATGATAATGGGTTAGGTAAATGTTT
1 CATGATAATGGGTTAGGTAAATGTTT
82917625 CATGATAATGGGTTAGGTAAATGTTT
1 CATGATAATGGGTTAGGTAAATGTTT
82917651 CATGATAA
1 CATGATAA
82917659 GAATTTCATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
CATGATAATGGGTTAGGTAAATGTTT
Found at i:82923281 original size:25 final size:25
Alignment explanation
Indices: 82923247--82923396 Score: 208
Period size: 25 Copynumber: 6.2 Consensus size: 25
82923237 TGATACAAAT
82923247 TGATAATAGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
82923272 TGATAATAGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
82923297 TGATAATAGGTTAGGTAAATG-TCA
1 TGATAATAGGTTAGGTAAATGTTCA
*
82923321 TGATAAT-GGTTAGG----T-TCCA
1 TGATAATAGGTTAGGTAAATGTTCA
82923340 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
*
82923365 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
82923391 TGATAA
1 TGATAA
82923397 GAATTTCATG
Statistics
Matches: 115, Mismatches: 2, Indels: 15
0.87 0.02 0.11
Matches are distributed among these distances:
19 17 0.15
23 8 0.07
24 10 0.09
25 56 0.49
26 24 0.21
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:82934148 original size:23 final size:23
Alignment explanation
Indices: 82934122--82934169 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
82934112 TGGAGTCGCC
82934122 AAGCTGTCGTAACCATTTTTTTT
1 AAGCTGTCGTAACCATTTTTTTT
82934145 AAGCTGTCGTAACCATTTTTTTT
1 AAGCTGTCGTAACCATTTTTTTT
82934168 AA
1 AA
82934170 AAAAAAACGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.12, T:0.46
Consensus pattern (23 bp):
AAGCTGTCGTAACCATTTTTTTT
Found at i:82936985 original size:20 final size:20
Alignment explanation
Indices: 82936929--82936989 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
82936919 CCTAAACTTA
* *
82936929 AAACCTAAA-CTTGTAGCCAT
1 AAACCTAAACCTTG-AACCCT
82936949 AAACCATAAACCCTTGAACCCT
1 AAACC-TAAA-CCTTGAACCCT
82936971 AAACCTAAACCTTGAACCC
1 AAACCTAAACCTTGAACCC
82936990 CCAAATCCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
20 15 0.42
21 8 0.22
22 9 0.25
23 4 0.11
ACGTcount: A:0.41, C:0.33, G:0.07, T:0.20
Consensus pattern (20 bp):
AAACCTAAACCTTGAACCCT
Found at i:82937083 original size:21 final size:21
Alignment explanation
Indices: 82937050--82937089 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
82937040 ACCTTAAACC
*
82937050 TTAAGATTTAGGGCTCAAGGT
1 TTAAGATTCAGGGCTCAAGGT
* *
82937071 TTAAGGTTCAGGGTTCAAG
1 TTAAGATTCAGGGCTCAAG
82937090 TTCAAGTCCG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.10, G:0.30, T:0.33
Consensus pattern (21 bp):
TTAAGATTCAGGGCTCAAGGT
Found at i:82942839 original size:44 final size:44
Alignment explanation
Indices: 82942802--82942902 Score: 141
Period size: 44 Copynumber: 2.3 Consensus size: 44
82942792 AGGGGTTTAG
*
82942802 GAATTGTCA-CTTCGATCCAATCCATTGCAACTTCAGGGAGATAA
1 GAATTGT-AGCTTCGATCCAATCCACTGCAACTTCAGGGAGATAA
* *
82942846 GACTTGTAGCTTCGATCCACTCCACTGCAACTTCAGGGAGATAA
1 GAATTGTAGCTTCGATCCAATCCACTGCAACTTCAGGGAGATAA
* *
82942890 GACTTGTAACTTC
1 GAATTGTAGCTTC
82942903 AATCTGCTTC
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
43 1 0.02
44 51 0.98
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (44 bp):
GAATTGTAGCTTCGATCCAATCCACTGCAACTTCAGGGAGATAA
Found at i:82942923 original size:44 final size:44
Alignment explanation
Indices: 82942822--82943213 Score: 257
Period size: 44 Copynumber: 8.8 Consensus size: 44
82942812 TTCGATCCAA
* * * **
82942822 TCCATTGCAACTTCAGGGAGATAAGACTTGTAGCTTCGATCCAC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGC
82942866 TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGC
* * * * * ** *
82942910 TTCGCTGCTACTTCAGGGAGATGAGATTTGTGTCTTCAATTTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGC
* * * *
82942954 TCCACTGCAACCTCAGGGAGATAA-AGTGTGTAGCTGT-AATTTGC
1 TCCACTGCAACTTCAGGGAGATAAGACT-TGTAACT-TCAATCTGC
** *** * ** * * *
82942998 TCTGCTGCAACTTCAAAAAGATAAGATTTGTTATTTTTAACCCGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTG-TAACTTCAATCTGC
* * * ** *** * *
82943043 TTCACTGCAATTTTAGGGAGATAAGGTTTGCGTCTTTAATCTGT
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGC
* * *
82943087 TCCACTGCAACTTCAAGGAGATAAGATTTGTAGCCCGTCTTCAATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTA-----ACTTCAATCTGC
* * * * * * *
82943136 TCTACTGCAACTTTAGGGTGATTAGACTTGTAGCTTAAAACTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGC
*
82943180 TCCACTGCAACTTTAGGGAGATAAGACTTGTAAC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTAAC
82943214 ACCCCCTAAC
Statistics
Matches: 268, Mismatches: 70, Indels: 20
0.75 0.20 0.06
Matches are distributed among these distances:
43 2 0.01
44 199 0.74
45 31 0.12
49 36 0.13
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGC
Found at i:82944334 original size:21 final size:20
Alignment explanation
Indices: 82944301--82944393 Score: 87
Period size: 21 Copynumber: 4.5 Consensus size: 20
82944291 TGACACACAA
*
82944301 GTGCCTGAAACGACACACGAG
1 GTGCCTGATACGACACA-GAG
* * * *
82944322 GTGCTTTATACGACACATAAA
1 GTGCCTGATACGACACA-GAG
*
82944343 GTGCCTGAAACGACACAGAG
1 GTGCCTGATACGACACAGAG
* *
82944363 GTGCCTGATACGACACATAAA
1 GTGCCTGATACGACACA-GAG
82944384 GTGCCTGATA
1 GTGCCTGATA
82944394 TATGACACAT
Statistics
Matches: 57, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
20 17 0.30
21 40 0.70
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.18
Consensus pattern (20 bp):
GTGCCTGATACGACACAGAG
Found at i:82944346 original size:42 final size:41
Alignment explanation
Indices: 82944299--82944391 Score: 159
Period size: 41 Copynumber: 2.2 Consensus size: 41
82944289 TATGACACAC
* *
82944299 AAGTGCCTGAAACGACACACGAGGTGCTTTATACGACACATA
1 AAGTGCCTGAAACGACACA-GAGGTGCCTGATACGACACATA
82944341 AAGTGCCTGAAACGACACAGAGGTGCCTGATACGACACATA
1 AAGTGCCTGAAACGACACAGAGGTGCCTGATACGACACATA
82944382 AAGTGCCTGA
1 AAGTGCCTGA
82944392 TATATGACAC
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 30 0.61
42 19 0.39
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (41 bp):
AAGTGCCTGAAACGACACAGAGGTGCCTGATACGACACATA
Found at i:82946274 original size:89 final size:89
Alignment explanation
Indices: 82946108--82946840 Score: 463
Period size: 89 Copynumber: 8.3 Consensus size: 89
82946098 TCGGTTCTAA
* * ** * * *
82946108 TGCAACTTCAGGGAAATAAGATTTCCTATTTTTAGTCTACTCCACTGCAA-TCTCAGGGAGATAA
1 TGCAACTTCAGGGAGATAAGATTT-ATAACTTTAATCTGCTCTACTGCAACT-TCAGGGAGATAA
* *
82946172 GACTT-GTGA-CTTCAACCTGCTTCAC
64 GATTTACT-ATCTTCAACCTGCTTCAC
* * * *
82946197 TGCAACTTTAGGGAGATAAGATTTATAACTTTAATCTACTTTACTGCAACTTCAGAGAGATAAGA
1 TGCAACTTCAGGGAGATAAGATTTATAACTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGA
* *
82946262 TTTACTATCTTCAATCTAC-TCTAC
66 TTTACTATCTTCAACCTGCTTC-AC
* * * * * * * * *
82946286 TACATCTTTAGGGAGATAAGATTTGTAACTTCAACCTGCTCCAATGCAACTTCAGGGAGATAAGG
1 TGCAACTTCAGGGAGATAAGATTTATAACTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGA
* * * *
82946351 TTTA-TAGT-TTTAATCTACTTTAC
66 TTTACTA-TCTTCAACCTGCTTCAC
* * * * ** * *
82946374 TGCAGCTTCAGAGAGATAAGATTTGTTATCTTCCATCCGCTCCACTGCAACTTCAGGGAGATAAG
1 TGCAACTTCAGGGAGATAAGATTT-ATAACTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAG
* *
82946439 ACTTGTA--AT-TTCAACCTCCTCCAC
65 A-TT-TACTATCTTCAACCTGCTTCAC
* * * **
82946463 TACAACTTTAGGGAGATAAGGA-TTATAGCTTTAATCTGCTCTACTGCAACTTCAGAAAGATAAG
1 TGCAACTTCAGGGAGATAA-GATTTATAACTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAG
* ** *
82946527 ATTTGCTATCTTCCGCTTG-TTCCAC
65 ATTTACTATCTTCAACCTGCTT-CAC
* * * * * *
82946552 TGGAACTTCAGGTAGACAAGATTTATAGCTTTAATCTACTCTACTGCAACTTCAGGGAGATAATA
1 TGCAACTTCAGGGAGATAAGATTTATAACTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGA
* * * *
82946617 TTTGCTATCTTTAATCTGCTCCAC
66 TTTACTATCTTCAACCTGCTTCAC
* * * * **
82946641 TGTAACCTCAGGGAGATAAGACTTATAA-TTTCAA-CTTGCTCCACTGCAACTTCAGCAAGATAA
1 TGCAACTTCAGGGAGATAAGATTTATAACTTT-AATC-TGCTCTACTGCAACTTCAGGGAGATAA
* * * * * *
82946704 GGTTTA-TAGCTTTAATCTTC-TCTTC
64 GATTTACTATCTTCAACCTGCTTC-AC
** * * * * * * * *
82946729 TGCAACTTCAAAGAGACAAGATTTGCTATCTTCAGTCTGCTCCACTGCAATTTCAGGGAGACAAG
1 TGCAACTTCAGGGAGATAAGATTT-ATAACTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAG
* ** * * *
82946794 ATTT-GTGGCTTTAATCTGCTCCAC
65 ATTTACTATCTTCAACCTGCTTCAC
82946818 TGCAACTTCAGGGAGATAAGATT
1 TGCAACTTCAGGGAGATAAGATT
82946841 CGCCATGATG
Statistics
Matches: 506, Mismatches: 114, Indels: 48
0.76 0.17 0.07
Matches are distributed among these distances:
86 1 0.00
87 3 0.01
88 143 0.28
89 347 0.69
90 10 0.02
91 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (89 bp):
TGCAACTTCAGGGAGATAAGATTTATAACTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGA
TTTACTATCTTCAACCTGCTTCAC
Found at i:82946334 original size:133 final size:133
Alignment explanation
Indices: 82946108--82946539 Score: 562
Period size: 133 Copynumber: 3.2 Consensus size: 133
82946098 TCGGTTCTAA
* * * * * *
82946108 TGCAACTTCAGGGAAATAAGATTTCCTATTTTTAGTCTACTCCACTGCAATC-TCAGGGAGATAA
1 TGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTACTCCACTGC-ATCTTCAGGGAGATAA
* * *
82946172 GACTTGTGACTTCAACCTGCTTCACTGCAACTTTAGGGAGATAAGATTTATAACTTTAATCTACT
65 GACTTGTAACTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGATTTATAGCTTTAATCTACT
82946237 TTAC
130 TTAC
* * * *
82946241 TGCAACTTCAGAGAGATAAGATTTACTATCTTCAATCTACTCTACTACATCTTTAGGGAGATAAG
1 TGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTACTCCACTGCATCTTCAGGGAGATAAG
* * * * *
82946306 ATTTGTAACTTCAACCTGCTCCAATGCAACTTCAGGGAGATAAGGTTTATAGTTTTAATCTACTT
66 ACTTGTAACTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGATTTATAGCTTTAATCTACTT
82946371 TAC
131 TAC
* * * ** *
82946374 TGCAGCTTCAGAGAGATAAGATTTGTTATCTTCCATCCGCTCCACTGCAACTTCAGGGAGATAAG
1 TGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTACTCCACTGCATCTTCAGGGAGATAAG
* * * *
82946439 ACTTGTAATTTCAACCTCCTCCACTACAACTTTAGGGAGATAAGGA-TTATAGCTTTAATCTGCT
66 ACTTGTAACTTCAACCTGCTCCACTGCAACTTTAGGGAGATAA-GATTTATAGCTTTAATCTACT
*
82946503 CTAC
130 TTAC
*
82946507 TGCAACTTCAGAAAGATAAGATTTGCTATCTTC
1 TGCAACTTCAGAGAGATAAGATTTGCTATCTTC
82946540 CGCTTGTTCC
Statistics
Matches: 257, Mismatches: 40, Indels: 4
0.85 0.13 0.01
Matches are distributed among these distances:
132 3 0.01
133 253 0.98
134 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (133 bp):
TGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTACTCCACTGCATCTTCAGGGAGATAAG
ACTTGTAACTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGATTTATAGCTTTAATCTACTT
TAC
Found at i:82946422 original size:222 final size:220
Alignment explanation
Indices: 82946106--82946840 Score: 771
Period size: 222 Copynumber: 3.3 Consensus size: 220
82946096 AATCGGTTCT
* * * ** *
82946106 AATGCAACTTCAGGGAAATAAGATTTCCTATTTTTAGTCTACTCCACTGCAA-TCTCAGGGAGAT
1 AATGCAACTTCAGGGAGACAAGATTT-ATAGCTTTAATCTACTCCACTGCAACT-TCAGGGAGAT
* * * * * *
82946170 AAGACTTGTGA-CTTCAACCTGCTTCACTGCAACTTTAGGGAGATAAGATTTATAACTTT-AATC
64 AAGATTTGTTATCTTCATCC-GCTCCACTGCAACTTCAGGGAGATAAGACTTATAA-TTTCAA-C
** * * * * * *
82946233 TACTTTACTGCAACTTCAGAGAGATAAGATTTACTATCTTCAATCTACTCTACTACATCTTTAGG
126 TACTCCACTGCAACTTCAGAGAGATAAGATTTA-TAGCTTTAATCTACTCTACTGCAACTTCAGA
* *
82946298 GAGATAAGATTTG-TAACTTCAACCTGCTCC
190 GAGATAAGATTTGCTATCTTCAGCCTGCTCC
* * * ** * *
82946328 AATGCAACTTCAGGGAGATAAGGTTTATAGTTTTAATCTACTTTACTGCAGCTTCAGAGAGATAA
1 AATGCAACTTCAGGGAGACAAGATTTATAGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAA
* *
82946393 GATTTGTTATCTTCCATCCGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTCAACCTCC
66 GATTTGTTATCTT-CATCCGCTCCACTGCAACTTCAGGGAGATAAGACTTATAATTTCAA-CTAC
* * * * *
82946458 TCCACTACAACTTTAGGGAGATAAGGA-TTATAGCTTTAATCTGCTCTACTGCAACTTCAGAAAG
129 TCCACTGCAACTTCAGAGAGATAA-GATTTATAGCTTTAATCTACTCTACTGCAACTTCAGAGAG
* * *
82946522 ATAAGATTTGCTATCTTCCGCTTGTTCC
193 ATAAGATTTGCTATCTTCAGCCTGCTCC
* * * *
82946550 ACTGGAACTTCAGGTAGACAAGATTTATAGCTTTAATCTACTCTACTGCAACTTCAGGGAGATAA
1 AATGCAACTTCAGGGAGACAAGATTTATAGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAA
* * * * * * *
82946615 TATTTGCTATCTTTAATCTGCTCCACTGTAACCTCAGGGAGATAAGACTTATAATTTCAACTTGC
66 GATTTGTTATC-TTCATCCGCTCCACTGCAACTTCAGGGAGATAAGACTTATAATTTCAAC-TAC
* * * *
82946680 TCCACTGCAACTTCAGCA-AGATAAGGTTTATAGCTTTAATCTTCTCTTCTGCAACTTCAAAGAG
129 TCCACTGCAACTTCAG-AGAGATAAGATTTATAGCTTTAATCTACTCTACTGCAACTTCAGAGAG
* *
82946744 ACAAGATTTGCTATCTTCAGTCTGCTCC
193 ATAAGATTTGCTATCTTCAGCCTGCTCC
* * * * *
82946772 ACTGCAATTTCAGGGAGACAAGATTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
1 AATGCAACTTCAGGGAGACAAGATTTATAGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAA
82946837 GATT
66 GATT
82946841 CGCCATGATG
Statistics
Matches: 429, Mismatches: 74, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
221 78 0.18
222 343 0.80
223 8 0.02
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (220 bp):
AATGCAACTTCAGGGAGACAAGATTTATAGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAA
GATTTGTTATCTTCATCCGCTCCACTGCAACTTCAGGGAGATAAGACTTATAATTTCAACTACTC
CACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAATCTACTCTACTGCAACTTCAGAGAGATA
AGATTTGCTATCTTCAGCCTGCTCC
Found at i:82946540 original size:133 final size:133
Alignment explanation
Indices: 82946089--82946614 Score: 540
Period size: 133 Copynumber: 4.0 Consensus size: 133
82946079 CCATAATTTG
*** * * * **
82946089 TAGCTTTAATCGGTTCTAATGCAACTTCAGGGAA-ATAAGATTTCCTAT-TTTTAGTCTACTCCA
1 TAGCTTTAATCTACTCTACTGCAACTTCA-GAAAGATAAGATTTGCTATCTTCCA-TCTACTCCA
* *
82946152 CTGCAA-TCTCAGGGAGATAAGACTTGTGACTTCAACCTGCTTCACTGCAACTTTAGGGAGATAA
64 CTGCAACT-TCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTTAGGGAGATAA
82946216 -GATTTA
128 GGA-TTA
* * * * * *
82946222 TAACTTTAATCTACTTTACTGCAACTTCAGAGAGATAAGATTTACTATCTTCAATCTACTCTACT
1 TAGCTTTAATCTACTCTACTGCAACTTCAGAAAGATAAGATTTGCTATCTTCCATCTACTCCACT
* * * * * * *
82946287 ACATCTTTAGGGAGATAAGATTTGTAACTTCAACCTGCTCCAATGCAACTTCAGGGAGATAAGGT
66 GCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGGA
82946352 TTA
131 TTA
* * * * * **
82946355 TAGTTTTAATCTACTTTACTGCAGCTTCAGAGAGATAAGATTTGTTATCTTCCATCCGCTCCACT
1 TAGCTTTAATCTACTCTACTGCAACTTCAGAAAGATAAGATTTGCTATCTTCCATCTACTCCACT
* * *
82946420 GCAACTTCAGGGAGATAAGACTTGTAATTTCAACCTCCTCCACTACAACTTTAGGGAGATAAGGA
66 GCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGGA
82946485 TTA
131 TTA
* * **
82946488 TAGCTTTAATCTGCTCTACTGCAACTTCAGAAAGATAAGATTTGCTATCTTCC-GCTTGTTCCAC
1 TAGCTTTAATCTACTCTACTGCAACTTCAGAAAGATAAGATTTGCTATCTTCCATC-TACTCCAC
* * * * * * * * * * *
82946552 TGGAACTTCAGGTAGACAAGATTTATAGCTTTAATCTACTCTACTGCAACTTCAGGGAGATAA
65 TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTTAGGGAGATAA
82946615 TATTTGCTAT
Statistics
Matches: 326, Mismatches: 62, Indels: 10
0.82 0.16 0.03
Matches are distributed among these distances:
132 3 0.01
133 318 0.98
134 5 0.02
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (133 bp):
TAGCTTTAATCTACTCTACTGCAACTTCAGAAAGATAAGATTTGCTATCTTCCATCTACTCCACT
GCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGGA
TTA
Found at i:82946835 original size:133 final size:133
Alignment explanation
Indices: 82946542--82946840 Score: 359
Period size: 133 Copynumber: 2.2 Consensus size: 133
82946532 CTATCTTCCG
* * * * *
82946542 CTTGTTCCACTGGAACTTCAGGTAGACAAGATTTATAGCTTTAATCTACTCTACTGCAACTTCAG
1 CTTGCTCCACTGCAACTTCAGGAAGATAAGATTTATAGCTTTAATCTACTCTACTGCAACTTCAA
* * * * * *
82946607 GGAGATAATATTTGCTATCTTTAATCTGCTCCACTGTAACCTCAGGGAGATAAGACTTATAATTT
66 AGAGACAAGATTTGCTATCTTCAATCTGCTCCACTGCAACCTCAGGGAGACAAGACTTATAATTT
82946672 CAA
131 CAA
* * * *
82946675 CTTGCTCCACTGCAACTTCAGCAAGATAAGGTTTATAGCTTTAATCTTCTCTTCTGCAACTTCAA
1 CTTGCTCCACTGCAACTTCAGGAAGATAAGATTTATAGCTTTAATCTACTCTACTGCAACTTCAA
* ** * * **
82946740 AGAGACAAGATTTGCTATCTTCAGTCTGCTCCACTGCAATTTCAGGGAGACAAGATTTGTGGCTT
66 AGAGACAAGATTTGCTATCTTCAATCTGCTCCACTGCAACCTCAGGGAGACAAGACTTAT-AATT
82946805 T-AA
130 TCAA
*
82946808 -TCTGCTCCACTGCAACTTCAGGGAGATAAGATT
1 CT-TGCTCCACTGCAACTTCAGGAAGATAAGATT
82946841 CGCCATGATG
Statistics
Matches: 139, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
132 1 0.01
133 135 0.97
134 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (133 bp):
CTTGCTCCACTGCAACTTCAGGAAGATAAGATTTATAGCTTTAATCTACTCTACTGCAACTTCAA
AGAGACAAGATTTGCTATCTTCAATCTGCTCCACTGCAACCTCAGGGAGACAAGACTTATAATTT
CAA
Found at i:82947753 original size:5 final size:5
Alignment explanation
Indices: 82947734--82947779 Score: 62
Period size: 5 Copynumber: 9.8 Consensus size: 5
82947724 CCTCTCACTT
*
82947734 TTTTC TCTT- TTTTC TTTTC TTTTC TTTTC TTTTC -TTTC -TTTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
82947780 GCTCTTTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
4 11 0.30
5 26 0.70
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTC
Found at i:82947756 original size:10 final size:10
Alignment explanation
Indices: 82947734--82947779 Score: 62
Period size: 9 Copynumber: 4.9 Consensus size: 10
82947724 CCTCTCACTT
*
82947734 TTTTCTCTT-
1 TTTTCTTTTC
82947743 TTTTCTTTTC
1 TTTTCTTTTC
82947753 TTTTCTTTTC
1 TTTTCTTTTC
82947763 TTTTC-TTTC
1 TTTTCTTTTC
82947772 -TTTCTTTT
1 TTTTCTTTT
82947780 GCTCTTTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
8 4 0.12
9 15 0.44
10 15 0.44
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTTCTTTTC
Found at i:82947758 original size:19 final size:21
Alignment explanation
Indices: 82947734--82947789 Score: 62
Period size: 23 Copynumber: 2.6 Consensus size: 21
82947724 CCTCTCACTT
82947734 TTTTCTCTTTTTTC-T-TTTC
1 TTTTCTCTTTTTTCTTCTTTC
*
82947753 TTTTCTTTTCTTTTCTTTCTTTC
1 TTTTCTCTT-TTTTC-TTCTTTC
82947776 TTTTGCTCTTTTTT
1 TTTT-CTCTTTTTT
82947790 TTAGGTGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
19 8 0.27
20 5 0.17
22 1 0.03
23 12 0.40
24 4 0.13
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.79
Consensus pattern (21 bp):
TTTTCTCTTTTTTCTTCTTTC
Found at i:82947790 original size:24 final size:24
Alignment explanation
Indices: 82947734--82947779 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
82947724 CCTCTCACTT
82947734 TTTTCTCTTT-TTTCTTTTCTTTTC
1 TTTTCT-TTTCTTTCTTTTCTTTTC
82947758 TTTTCTTTTCTTTC-TTTCTTTT
1 TTTTCTTTTCTTTCTTTTCTTTT
82947780 GCTCTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (24 bp):
TTTTCTTTTCTTTCTTTTCTTTTC
Found at i:82950129 original size:19 final size:20
Alignment explanation
Indices: 82950105--82950142 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
82950095 GGTACCACCA
82950105 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
82950124 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
82950143 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:82950487 original size:93 final size:93
Alignment explanation
Indices: 82950372--82950542 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
82950362 GCCCCTAAGT
*
82950372 GAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCATAAATGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGA-CATTCGCATCCATAAATGAACTCGGACTCAACTCA
82950436 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
82950465 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
82950530 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82950543 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
93 71 0.97
94 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82950538 original size:46 final size:47
Alignment explanation
Indices: 82950367--82950539 Score: 212
Period size: 46 Copynumber: 3.7 Consensus size: 47
82950357 AACCCGCCCC
* * *
82950367 TAAGTGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTTGCATCCA
* * *
82950413 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-ATTTGCATCCA
* *
82950461 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTTGCATCCA
82950506 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82950540 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 58 0.54
47 31 0.29
48 3 0.03
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTTGCATCCA
Found at i:82959508 original size:50 final size:49
Alignment explanation
Indices: 82959388--82959563 Score: 185
Period size: 50 Copynumber: 3.5 Consensus size: 49
82959378 CTGGTATGCA
* * *
82959388 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATC-CAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGA-TACACG
* * * *
82959437 TAGTAGCCTGCACATAATACTACATACGTGACCTAACTATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTGATACACG
* * * * *
82959487 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAT-TGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCT-GATACACG
82959538 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
82959564 TGCGACCTAG
Statistics
Matches: 105, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
49 28 0.27
50 42 0.40
51 35 0.33
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGATACACG
Found at i:82959590 original size:101 final size:99
Alignment explanation
Indices: 82959388--82959572 Score: 226
Period size: 101 Copynumber: 1.8 Consensus size: 99
82959378 CTGGTATGCA
* * *
82959388 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAGTAGCCTGCACATA
1 TAGTAGCCTACACTTAGTACTACACACGCGACCAATTATCCAGTACACATAGTAGCCTGCACATA
* *
82959453 ATACTACATACGTGACCTAACTATCTGATACACG
66 ATACTACACACGCGACCTAACTATCTGATACACG
* * *** * *
82959487 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATTGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTACACTTAGTACTACACACGCGA-CCAA-TTATCCAGTACACATAGTAGCCTGCACA
* *
82959552 TAGTACTACACATGCGACCTA
64 TAATACTACACACGCGACCTA
82959573 GCTACATATA
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
99 28 0.40
100 3 0.04
101 39 0.56
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTACACTTAGTACTACACACGCGACCAATTATCCAGTACACATAGTAGCCTGCACATA
ATACTACACACGCGACCTAACTATCTGATACACG
Found at i:82963586 original size:50 final size:50
Alignment explanation
Indices: 82963466--82963650 Score: 237
Period size: 50 Copynumber: 3.7 Consensus size: 50
82963456 CTGGTATGCA
*
82963466 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGGTACACG
* * * *
82963515 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGGTACACG
* * * * * * *
82963565 TAGTAGCCTGCACTTAATACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAA-TTATCCGGTACACG
*
82963616 TAGTAGCCTGCACTTAGTACTACACATGCGACCTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTA
82963651 GCTACATATA
Statistics
Matches: 116, Mismatches: 18, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
49 31 0.27
50 46 0.40
51 39 0.34
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGGTACACG
Found at i:82963668 original size:101 final size:99
Alignment explanation
Indices: 82963466--82963650 Score: 271
Period size: 101 Copynumber: 1.8 Consensus size: 99
82963456 CTGGTATGCA
* * *
82963466 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAATACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
*
82963531 GTACTACACACGTGACCTAACTATCTGATACACG
66 GTACTACACACGCGACCTAACTATCTGATACACG
* * * *
82963565 TAGTAGCCTGCACTTAATACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAATACTACACACGCGA-CCAA-TTATCCGGTACACATAGTAGCCTGCACT
*
82963630 TAGTACTACACATGCGACCTA
64 TAGTACTACACACGCGACCTA
82963651 GCTACATATA
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
99 28 0.37
100 3 0.04
101 44 0.59
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAATACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACTATCTGATACACG
Done.