Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 290 of 444
Found at i:83813378 original size:20 final size:19
Alignment explanation
Indices: 83813231--83813379 Score: 63
Period size: 20 Copynumber: 7.7 Consensus size: 19
83813221 TTTAAAATTT
*
83813231 ATTA-AAAATTA-GAAAAA
1 ATTATAAAATTATAAAAAA
* *
83813248 AGTATAAAAATCATAAAAAA
1 ATTAT-AAAATTATAAAAAA
* * *
83813268 ATCATAAAATATATAGAAAT
1 ATTATAAAAT-TATAAAAAA
* * *
83813288 ATAGAAAAAATTAT-AAAAT
1 AT-TATAAAATTATAAAAAA
* * ** *
83813307 TTTATAAAGTCGTAAGAAA
1 ATTATAAAATTATAAAAAA
* * *
83813326 ATTACAAAAAATATAAAGAA
1 ATTA-TAAAATTATAAAAAA
83813346 A-TATAAAATTTATAAAAAA
1 ATTATAAAA-TTATAAAAAA
83813365 ATTATAAAGATTATA
1 ATTATAAA-ATTATA
83813380 GTACCAAAAG
Statistics
Matches: 92, Mismatches: 30, Indels: 17
0.66 0.22 0.12
Matches are distributed among these distances:
17 3 0.03
18 10 0.11
19 33 0.36
20 39 0.42
21 7 0.08
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.28
Consensus pattern (19 bp):
ATTATAAAATTATAAAAAA
Found at i:83813578 original size:10 final size:10
Alignment explanation
Indices: 83813561--83813624 Score: 51
Period size: 10 Copynumber: 6.5 Consensus size: 10
83813551 TTTTGATACA
83813561 TTTT-ATAAT
1 TTTTAATAAT
*
83813570 TTTTAATAAAA
1 TTTTAAT-AAT
* *
83813581 TTTAAATAAC
1 TTTTAATAAT
* *
83813591 TTTTATTAAA
1 TTTTAATAAT
*
83813601 ATTTAATAAT
1 TTTTAATAAT
83813611 TTTT-ATAAT
1 TTTTAATAAT
83813620 TTTTA
1 TTTTA
83813625 TATTTTTTTT
Statistics
Matches: 42, Mismatches: 10, Indels: 5
0.74 0.18 0.09
Matches are distributed among these distances:
9 13 0.31
10 21 0.50
11 8 0.19
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (10 bp):
TTTTAATAAT
Found at i:83813616 original size:20 final size:20
Alignment explanation
Indices: 83813560--83813616 Score: 78
Period size: 21 Copynumber: 2.8 Consensus size: 20
83813550 TTTTTGATAC
* *
83813560 ATTTTATAATTTTTAATAAA
1 ATTTAATAATTTTTATTAAA
*
83813580 ATTTAAATAACTTTTATTAAA
1 ATTT-AATAATTTTTATTAAA
83813601 ATTTAATAATTTTTAT
1 ATTTAATAATTTTTAT
83813617 AATTTTTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 15 0.47
21 17 0.53
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (20 bp):
ATTTAATAATTTTTATTAAA
Found at i:83815265 original size:17 final size:17
Alignment explanation
Indices: 83815243--83815279 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
83815233 CTGCTTGATG
83815243 GTTCAATAATTACTTGA
1 GTTCAATAATTACTTGA
83815260 GTTCAATAATTACTTGA
1 GTTCAATAATTACTTGA
83815277 GTT
1 GTT
83815280 TTGGGTTGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (17 bp):
GTTCAATAATTACTTGA
Found at i:83817471 original size:32 final size:32
Alignment explanation
Indices: 83817392--83817477 Score: 95
Period size: 32 Copynumber: 2.7 Consensus size: 32
83817382 AAACCTGAGC
* *
83817392 TTGGCCTAATTTTTTTTCCCAAGCCCATGTTT
1 TTGGCCTAATATTTTTGCCCAAGCCCATGTTT
** *
83817424 CGGGCTTAATAATTTTTGCCCAAGCCCAT-TTT
1 TTGGCCTAAT-ATTTTTGCCCAAGCCCATGTTT
83817456 TTGGCCTAATGA-TTTTGCCCAA
1 TTGGCCTAAT-ATTTTTGCCCAA
83817478 ACCCTCCCAA
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
31 10 0.23
32 18 0.41
33 16 0.36
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (32 bp):
TTGGCCTAATATTTTTGCCCAAGCCCATGTTT
Found at i:83819133 original size:2 final size:2
Alignment explanation
Indices: 83819126--83819165 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
83819116 CATTTTGGAA
83819126 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
83819166 TCCATATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:83832206 original size:30 final size:30
Alignment explanation
Indices: 83832170--83832230 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
83832160 GGCCAATATG
83832170 ATCCTCCAAGGACCCTTCAAATAATGGGAT
1 ATCCTCCAAGGACCCTTCAAATAATGGGAT
83832200 ATCCTCCAAGGACCCTTCAAATAATGGGAT
1 ATCCTCCAAGGACCCTTCAAATAATGGGAT
83832230 A
1 A
83832231 ATTAAAATGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.23
Consensus pattern (30 bp):
ATCCTCCAAGGACCCTTCAAATAATGGGAT
Found at i:83841159 original size:18 final size:18
Alignment explanation
Indices: 83841136--83841170 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
83841126 TCATTCAAGT
83841136 ATTGACTTGTCTTTTCTA
1 ATTGACTTGTCTTTTCTA
83841154 ATTGACTTGTCTTTTCT
1 ATTGACTTGTCTTTTCT
83841171 TTATATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.17, G:0.11, T:0.57
Consensus pattern (18 bp):
ATTGACTTGTCTTTTCTA
Found at i:83842054 original size:25 final size:25
Alignment explanation
Indices: 83841976--83842054 Score: 113
Period size: 25 Copynumber: 3.2 Consensus size: 25
83841966 CCACACGGCC
*
83841976 GTGTCACACACCCGTGTGCCAGGCT
1 GTGTCACACGCCCGTGTGCCAGGCT
* * * *
83842001 ATGTCACACGCCCGTGCGCTAGGCC
1 GTGTCACACGCCCGTGTGCCAGGCT
83842026 GTGTCACACGCCCGTGTGCCAGGCT
1 GTGTCACACGCCCGTGTGCCAGGCT
83842051 GTGT
1 GTGT
83842055 AACTCACTGA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.14, C:0.35, G:0.30, T:0.20
Consensus pattern (25 bp):
GTGTCACACGCCCGTGTGCCAGGCT
Found at i:83844357 original size:30 final size:30
Alignment explanation
Indices: 83844321--83844380 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
83844311 AATATCTTTC
83844321 CTAACTACTTTCAAACTTGAGGATGCAACA
1 CTAACTACTTTCAAACTTGAGGATGCAACA
83844351 CTAACTACTTTCAAACTTGAGGATGCAACA
1 CTAACTACTTTCAAACTTGAGGATGCAACA
83844381 TTGTAACATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (30 bp):
CTAACTACTTTCAAACTTGAGGATGCAACA
Found at i:83850163 original size:34 final size:33
Alignment explanation
Indices: 83850117--83850236 Score: 114
Period size: 34 Copynumber: 3.5 Consensus size: 33
83850107 ACACGGTCAA
* *
83850117 CCATCCAACACACCAGATGCTCGTATGAGCTAAT
1 CCATCCAGCACACCAAATGCTCGTATGA-CTAAT
**
83850151 CCATCCAGCACACCAAATATTCGTATGACTTAAT
1 CCATCCAGCACACCAAATGCTCGTATGAC-TAAT
* ** * *
83850185 CTATCCAGTGCACCAAATGCTCATATTAACTAAT
1 CCATCCAGCACACCAAATGCTCGTA-TGACTAAT
**
83850219 TTATCCAGCACACCAAAT
1 CCATCCAGCACACCAAAT
83850237 ACCACTATAA
Statistics
Matches: 70, Mismatches: 14, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
33 1 0.01
34 66 0.94
35 3 0.04
ACGTcount: A:0.35, C:0.30, G:0.10, T:0.25
Consensus pattern (33 bp):
CCATCCAGCACACCAAATGCTCGTATGACTAAT
Found at i:83855150 original size:26 final size:25
Alignment explanation
Indices: 83855121--83855178 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 25
83855111 CTCATCCCAT
*
83855121 TTTTACCTTAGTAAAGTTTTTGACAA
1 TTTTACCTTAGTAAA-ATTTTGACAA
* *
83855147 TTTTACCCTTGGTAAAATTTTGACGA
1 TTTTA-CCTTAGTAAAATTTTGACAA
83855173 TTTTAC
1 TTTTAC
83855179 TCCCGATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 1 0.04
26 18 0.64
27 9 0.32
ACGTcount: A:0.28, C:0.14, G:0.12, T:0.47
Consensus pattern (25 bp):
TTTTACCTTAGTAAAATTTTGACAA
Found at i:83859342 original size:10 final size:11
Alignment explanation
Indices: 83859317--83859358 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
83859307 TAAAAAGTTA
*
83859317 AAAAAGTATAAA
1 AAAAA-TATAAG
*
83859329 AAAAAT-TTAG
1 AAAAATATAAG
83859339 AAAAATATAAG
1 AAAAATATAAG
83859350 AAAAATATA
1 AAAAATATA
83859359 TATTATAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
10 8 0.31
11 13 0.50
12 5 0.19
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.21
Consensus pattern (11 bp):
AAAAATATAAG
Found at i:83859342 original size:21 final size:21
Alignment explanation
Indices: 83859308--83859355 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
83859298 AAAAAAAGGT
* *
83859308 AAAAAGTTAAAAAAGTATAAA
1 AAAAATTTAAAAAAATATAAA
* *
83859329 AAAAATTTAGAAAAATATAAG
1 AAAAATTTAAAAAAATATAAA
83859350 AAAAAT
1 AAAAAT
83859356 ATATATTATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.71, C:0.00, G:0.08, T:0.21
Consensus pattern (21 bp):
AAAAATTTAAAAAAATATAAA
Found at i:83859843 original size:19 final size:19
Alignment explanation
Indices: 83859801--83859845 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
83859791 TTTTTTTTTA
* *
83859801 AAATTTTAACTATTTTTTT
1 AAATTTTAACTATATGTTT
*
83859820 AAATTTTAATTATATGTTT
1 AAATTTTAACTATATGTTT
*
83859839 CAATTTT
1 AAATTTT
83859846 TATAATCTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.60
Consensus pattern (19 bp):
AAATTTTAACTATATGTTT
Found at i:83862746 original size:21 final size:21
Alignment explanation
Indices: 83862703--83862747 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
83862693 AAAGAAGGTT
*
83862703 GGAAGAAAGAGAAAAGGGGAG
1 GGAAGAAAGAGAAAAGGCGAG
* *
83862724 GGAAGAAAGAGAGAAGGCTAG
1 GGAAGAAAGAGAAAAGGCGAG
83862745 GGA
1 GGA
83862748 GAAGCTGAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.49, C:0.02, G:0.47, T:0.02
Consensus pattern (21 bp):
GGAAGAAAGAGAAAAGGCGAG
Found at i:83865621 original size:2 final size:2
Alignment explanation
Indices: 83865614--83865657 Score: 52
Period size: 2 Copynumber: 22.0 Consensus size: 2
83865604 CACAAGGGTT
* * * *
83865614 TC TC TC TC TC CC TC CC TC CC TT TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
83865656 TC
1 TC
83865658 ACTTACATTG
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (2 bp):
TC
Found at i:83872763 original size:25 final size:25
Alignment explanation
Indices: 83872715--83872766 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
83872705 TTTGGCTTGA
**
83872715 CATTTACTAAGCAACATCGGATATT
1 CATTTACTAAGCAACATCAAATATT
* *
83872740 CATTTATTAAGCAATATCAAATATT
1 CATTTACTAAGCAACATCAAATATT
83872765 CA
1 CA
83872767 AATTATTCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (25 bp):
CATTTACTAAGCAACATCAAATATT
Found at i:83877058 original size:14 final size:16
Alignment explanation
Indices: 83877039--83877078 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
83877029 ATTTTGTTAA
83877039 ATTATAA-TA-ATTAT
1 ATTATAATTATATTAT
83877053 ATTATAATTATATTAT
1 ATTATAATTATATTAT
*
83877069 TTTAT-ATTAT
1 ATTATAATTAT
83877079 GAAATAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 7 0.30
15 7 0.30
16 9 0.39
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
ATTATAATTATATTAT
Found at i:83877061 original size:11 final size:11
Alignment explanation
Indices: 83877045--83877078 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
83877035 TTAAATTATA
83877045 ATAATTATATT
1 ATAATTATATT
83877056 ATAATTATATT
1 ATAATTATATT
*
83877067 AT-TTTATATT
1 ATAATTATATT
83877077 AT
1 AT
83877079 GAAATAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 9 0.41
11 13 0.59
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (11 bp):
ATAATTATATT
Found at i:83877226 original size:23 final size:23
Alignment explanation
Indices: 83877183--83877226 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
83877173 AATAGATATT
* *
83877183 TATTATAATTATTATTTAATTGA
1 TATTATAATTATAATTAAATTGA
83877206 TATTA-AATTATAAATTAAATT
1 TATTATAATTAT-AATTAAATT
83877227 AAATAGTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (23 bp):
TATTATAATTATAATTAAATTGA
Found at i:83877383 original size:28 final size:29
Alignment explanation
Indices: 83877329--83877388 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 29
83877319 AGCTAAAGAT
83877329 ATTTATTATAATAATAATTATTAAATT-A
1 ATTTATTATAATAATAATTATTAAATTGA
*
83877357 ATTTATTATAA-AATTATATTA-TGAATTGA
1 ATTTATTATAATAA-TA-ATTATTAAATTGA
83877386 ATT
1 ATT
83877389 AAATTAAAGC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 2 0.07
28 18 0.64
29 8 0.29
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (29 bp):
ATTTATTATAATAATAATTATTAAATTGA
Found at i:83877499 original size:3 final size:3
Alignment explanation
Indices: 83877491--83877540 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
83877481 AAATAGATAT
83877491 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
83877539 TT
1 TT
83877541 GTCAACTAAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:83877653 original size:13 final size:13
Alignment explanation
Indices: 83877621--83877655 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
83877611 GAAACAGGGG
*
83877621 AAAGGAAAGAAGA
1 AAAGGAAAAAAGA
83877634 AAA-GAAAAAAGA
1 AAAGGAAAAAAGA
83877646 AAAGGAAAAA
1 AAAGGAAAAA
83877656 CTAGGGTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (13 bp):
AAAGGAAAAAAGA
Found at i:83885367 original size:41 final size:41
Alignment explanation
Indices: 83885301--83885382 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
83885291 TTTTTGAAAA
*
83885301 AAAAGAGTCAGTTTTCTCTCTATCTTCCTGATGATTTCTTT
1 AAAAGAGTCAGTTTTCTCTCCATCTTCCTGATGATTTCTTT
*
83885342 AAAAGAGTCAGTTTTTTCTCCATCTTCCTGATGATTTCTTT
1 AAAAGAGTCAGTTTTCTCTCCATCTTCCTGATGATTTCTTT
83885383 CCCCATCTCT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.22, C:0.20, G:0.12, T:0.46
Consensus pattern (41 bp):
AAAAGAGTCAGTTTTCTCTCCATCTTCCTGATGATTTCTTT
Found at i:83894455 original size:59 final size:58
Alignment explanation
Indices: 83894376--83894487 Score: 190
Period size: 59 Copynumber: 1.9 Consensus size: 58
83894366 ATATAATTTT
*
83894376 CAAAACTAACATGCATTAAACCAATCAAAGCATGTATATATTATATAT-TTATTCATA
1 CAAAACTAACATGCATTAAACCAATCAAAGCATGCATATATTATATATATTATTCATA
83894433 CAAAACTCCAACATGCATTAAACCAATCAAAGCATGCATATATTATATATATTAT
1 CAAAACT--AACATGCATTAAACCAATCAAAGCATGCATATATTATATATATTAT
83894488 AAAATATATA
Statistics
Matches: 51, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
57 7 0.14
59 40 0.78
60 4 0.08
ACGTcount: A:0.46, C:0.18, G:0.05, T:0.31
Consensus pattern (58 bp):
CAAAACTAACATGCATTAAACCAATCAAAGCATGCATATATTATATATATTATTCATA
Found at i:83898989 original size:105 final size:105
Alignment explanation
Indices: 83898757--83899447 Score: 638
Period size: 105 Copynumber: 6.7 Consensus size: 105
83898747 TTAAAAGTCA
* * * * * *
83898757 CGATCTTAAATCAGCTAACTCAAAAATGGATAAGTTGCGATCTTAAATCAACTAACCTTTGTCAA
1 CGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGAGATATTAAATCAACTAACCTTTGTAAA
* * * *
83898822 ATCA-ATCGTGAACGTAGGTCA-CGAGTTGTTTAGGAGCTA
66 ATCAGCT-GTGAACGTAGGTCATCGAGCTGTTTAGGAGTTG
* * * * *
83898861 CAATATTAAATCAACTAACTCAAATATGGATAGGTTGAGATATTAAATCAACTAACCTTTGTAAA
1 CGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGAGATATTAAATCAACTAACCTTTGTAAA
* * * * *
83898926 ATTAGCTGTAAACATAGGTTATCAAGCTGTTTAGGAGTTG
66 ATCAGCTGTGAACGTAGGTCATCGAGCTGTTTAGGAGTTG
* * * * ** * *
83898966 CAATATTAAATCAGTTAACTC-AA-A-G-AT-GGAT-AG--ATTGCA-CAACAAACTTTTGTAAA
1 CGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGAGATATTAAATCAACTAACCTTTGTAAA
* * *
83899022 ATCAGTTGTGAACGTAGGTCATCGAGCTATTTAGAAGTTG
66 ATCAGCTGTGAACGTAGGTCATCGAGCTGTTTAGGAGTTG
* *
83899062 CGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGTGATATTAAATCAGCTAACCTTTGTAAA
1 CGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGAGATATTAAATCAACTAACCTTTGTAAA
* * * * ** * *
83899127 ATCAACCGCGAACATAGGTTGTCGAGCTATTTATGAGTTG
66 ATCAGCTGTGAACGTAGGTCATCGAGCTGTTTAGGAGTTG
* * * * * *
83899167 TGATCTTAAATCAGCTAACTCAAATATGAATATGTT-ACAATCTTAAATCAGCTAACCTTTGTAA
1 CGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGA-GATATTAAATCAACTAACCTTTGTAA
* * * * *
83899231 AATCAACCT-TAAACGTAGGTCATTGAGTTGTTTAGAAGTTG
65 AATC-AGCTGTGAACGTAGGTCATCGAGCTGTTTAGGAGTTG
* * * *
83899272 CGGTCTTAAATCAGCTACCTCAAAGATGAATATGTTGCA-ATATTAAATCATCTAACCTTTGTAA
1 CGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTG-AGATATTAAATCAACTAACCTTTGTAA
* ** * * * *
83899336 AATCGGCTGTGAGTGTAAGTCCTCGAGCT-ATTCGGAAGTTG
65 AATCAGCTGTGAACGTAGGTCATCGAGCTGTTTAGG-AGTTG
* * *
83899377 CGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGTGATCTTAAATCAACTAACCTTTGAAAA
1 CGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGAGATATTAAATCAACTAACCTTTGTAAA
83899442 ATCAGC
66 ATCAGC
83899448 ATCTTTAAAT
Statistics
Matches: 474, Mismatches: 95, Indels: 35
0.78 0.16 0.06
Matches are distributed among these distances:
96 65 0.14
97 6 0.01
98 1 0.00
99 3 0.01
100 5 0.01
101 5 0.01
102 2 0.00
103 1 0.00
104 82 0.17
105 301 0.64
106 2 0.00
107 1 0.00
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (105 bp):
CGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGAGATATTAAATCAACTAACCTTTGTAAA
ATCAGCTGTGAACGTAGGTCATCGAGCTGTTTAGGAGTTG
Found at i:83899082 original size:96 final size:96
Alignment explanation
Indices: 83898909--83899094 Score: 246
Period size: 96 Copynumber: 1.9 Consensus size: 96
83898899 GATATTAAAT
* * * * *
83898909 CAACTAACCTTTGTAAAATTAGCTGTAAACATAGGTTATCAAGCTGTTTAGGAGTTGCAATATTA
1 CAACAAACCTTTGTAAAATCAGCTGTAAACATAGGTCATCAAGCTATTTAGAAGTTGCAATATTA
* *
83898974 AATCAGTTAACTCAAAGATGGATAGATTGCA
66 AATCAGCTAACTCAAAGATGAATAGATTGCA
* * * * * * *
83899005 CAACAAACTTTTGTAAAATCAGTTGTGAACGTAGGTCATCGAGCTATTTAGAAGTTGCGATCTTA
1 CAACAAACCTTTGTAAAATCAGCTGTAAACATAGGTCATCAAGCTATTTAGAAGTTGCAATATTA
83899070 AATCAGCTAACTCAAAGATGAATAG
66 AATCAGCTAACTCAAAGATGAATAG
83899095 GTTGTGATAT
Statistics
Matches: 76, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
96 76 1.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (96 bp):
CAACAAACCTTTGTAAAATCAGCTGTAAACATAGGTCATCAAGCTATTTAGAAGTTGCAATATTA
AATCAGCTAACTCAAAGATGAATAGATTGCA
Found at i:83899119 original size:201 final size:203
Alignment explanation
Indices: 83898802--83899339 Score: 584
Period size: 201 Copynumber: 2.6 Consensus size: 203
83898792 TGCGATCTTA
* * * * * * * *
83898802 AATCAACTAACCTTTGTCAAATCAATCGTGAACGTAGGTCA-CGAGTTGTTTAGGAGCTACAATA
1 AATCAACAAACCTTTGTAAAATCAATTGTGAACGTAGGTCATCGAGTTGTTTAGAAGTTGCGATC
* * * * *
83898866 TTAAATCAACTAACTCAAATATGGATAGGTTGAGATATTAAATCAACTAACCTTTGTAAAATTAG
66 TTAAATCAGCTAACTCAAAGATGAATAGGTTGAGATATTAAATCAACTAACCTTTGTAAAATCAA
* * * * *
83898931 CTGTAAACATAGGTTATCAAGCTGTTTAGGAGTTGCAATATTAAATCAGTTAACTCAAAGATGGA
131 CCGCAAACATAGGTTATCAAGCTATTTAGGAGTTGCAATATTAAATCAGCTAACTCAAAGATGAA
*
83898996 TA-GATTGC
196 TATG-TTAC
* * * *
83899004 -A-CAACAAACTTTTGTAAAATCAGTTGTGAACGTAGGTCATCGAGCTATTTAGAAGTTGCGATC
1 AATCAACAAACCTTTGTAAAATCAATTGTGAACGTAGGTCATCGAGTTGTTTAGAAGTTGCGATC
* *
83899067 TTAAATCAGCTAACTCAAAGATGAATAGGTTGTGATATTAAATCAGCTAACCTTTGTAAAATCAA
66 TTAAATCAGCTAACTCAAAGATGAATAGGTTGAGATATTAAATCAACTAACCTTTGTAAAATCAA
* * * * ** * *
83899132 CCGCGAACATAGGTTGTCGAGCTATTTATGAGTTGTGATCTTAAATCAGCTAACTCAAATATGAA
131 CCGCAAACATAGGTTATCAAGCTATTTAGGAGTTGCAATATTAAATCAGCTAACTCAAAGATGAA
83899197 TATGTTAC
196 TATGTTAC
* * *
83899205 AATCTTAAATCAGCTAACCTTTGTAAAATCAACCT-TAAACGTAGGTCATTGAGTTGTTTAGAAG
1 AATC---AA-CA---AACCTTTGTAAAATCAA-TTGTGAACGTAGGTCATCGAGTTGTTTAGAAG
* * * *
83899269 TTGCGGTCTTAAATCAGCTACCTCAAAGATGAATATGTTGCA-ATATTAAATCATCTAACCTTTG
58 TTGCGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTG-AGATATTAAATCAACTAACCTTTG
83899333 TAAAATC
122 TAAAATC
83899340 GGCTGTGAGT
Statistics
Matches: 278, Mismatches: 45, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
200 33 0.12
201 132 0.47
202 2 0.01
203 1 0.00
206 2 0.01
207 2 0.01
210 105 0.38
211 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (203 bp):
AATCAACAAACCTTTGTAAAATCAATTGTGAACGTAGGTCATCGAGTTGTTTAGAAGTTGCGATC
TTAAATCAGCTAACTCAAAGATGAATAGGTTGAGATATTAAATCAACTAACCTTTGTAAAATCAA
CCGCAAACATAGGTTATCAAGCTATTTAGGAGTTGCAATATTAAATCAGCTAACTCAAAGATGAA
TATGTTAC
Found at i:83899299 original size:210 final size:209
Alignment explanation
Indices: 83898757--83899445 Score: 738
Period size: 210 Copynumber: 3.3 Consensus size: 209
83898747 TTAAAAGTCA
* * *
83898757 CGATCTTAAATCAGCTAACTCAAAAATGGATAAGTTGCGATCTTAAATCAACTAACCTTTGTCAA
1 CGATCTTAAATCAGCTAACTCAAAGATGAAT-AGTTGCGATCTTAAATCAACTAACCTTTGTAAA
* * * * * * * * *
83898822 ATCAATCGTGAACGTAGGTCA-CGAGTTGTTTAGGAGCTACAATATTAAATCAACTAACTCAAAT
65 ATCAACCTTGAACGTAGGTCATCGAGTTGTTTAGAAGTTGCGATCTTAAATCAGCTAACTCAAAG
* * * *
83898886 ATGGATAGGTTGAGATATTAAATCAACTAACCTTTGTAAAATTAGCTGTAAACATAGGTTATCAA
130 ATGAATAGGTTGAGATATTAAATCAACTAACCTTTGTAAAATCAGCTGTGAACATAGGTTATCGA
*
83898951 GCTGTTTAGGAGTTG
195 GCTATTTAGGAGTTG
* * * * *
83898966 CAATATTAAATCAGTTAACTCAAAGATGGATAGATTGC-A-C---AA-C-A--AACTTTTGTAAA
1 CGATCTTAAATCAGCTAACTCAAAGATGAATAG-TTGCGATCTTAAATCAACTAACCTTTGTAAA
** * *
83899022 ATC-AGTTGTGAACGTAGGTCATCGAGCTATTTAGAAGTTGCGATCTTAAATCAGCTAACTCAAA
65 ATCAACCT-TGAACGTAGGTCATCGAGTTGTTTAGAAGTTGCGATCTTAAATCAGCTAACTCAAA
* * * * * *
83899086 GATGAATAGGTTGTGATATTAAATCAGCTAACCTTTGTAAAATCAACCGCGAACATAGGTTGTCG
129 GATGAATAGGTTGAGATATTAAATCAACTAACCTTTGTAAAATCAGCTGTGAACATAGGTTATCG
*
83899151 AGCTATTTATGAGTTG
194 AGCTATTTAGGAGTTG
* * * * *
83899167 TGATCTTAAATCAGCTAACTCAAATATGAATATGTTACAATCTTAAATCAGCTAACCTTTGTAAA
1 CGATCTTAAATCAGCTAACTCAAAGATGAATA-GTTGCGATCTTAAATCAACTAACCTTTGTAAA
* * * *
83899232 ATCAACCTTAAACGTAGGTCATTGAGTTGTTTAGAAGTTGCGGTCTTAAATCAGCTACCTCAAAG
65 ATCAACCTTGAACGTAGGTCATCGAGTTGTTTAGAAGTTGCGATCTTAAATCAGCTAACTCAAAG
* * * *** * **
83899297 ATGAATATGTTGCA-ATATTAAATCATCTAACCTTTGTAAAATCGGCTGTGAGTGTAAGTCCTCG
130 ATGAATAGGTTG-AGATATTAAATCAACTAACCTTTGTAAAATCAGCTGTGAACATAGGTTATCG
*
83899361 AGCTA-TTCGGAAGTTG
194 AGCTATTTAGG-AGTTG
* *
83899377 CGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGTGATCTTAAATCAACTAACCTTTGAAAA
1 CGATCTTAAATCAGCTAACTCAAAGATGAATA-GTTGCGATCTTAAATCAACTAACCTTTGTAAA
83899442 ATCA
65 ATCA
83899446 GCATCTTTAA
Statistics
Matches: 394, Mismatches: 70, Indels: 31
0.80 0.14 0.06
Matches are distributed among these distances:
199 1 0.00
200 26 0.07
201 131 0.33
202 3 0.01
203 2 0.01
204 2 0.01
206 2 0.01
207 2 0.01
208 3 0.01
209 34 0.09
210 186 0.47
211 2 0.01
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (209 bp):
CGATCTTAAATCAGCTAACTCAAAGATGAATAGTTGCGATCTTAAATCAACTAACCTTTGTAAAA
TCAACCTTGAACGTAGGTCATCGAGTTGTTTAGAAGTTGCGATCTTAAATCAGCTAACTCAAAGA
TGAATAGGTTGAGATATTAAATCAACTAACCTTTGTAAAATCAGCTGTGAACATAGGTTATCGAG
CTATTTAGGAGTTG
Found at i:83901302 original size:5 final size:5
Alignment explanation
Indices: 83901292--83901350 Score: 82
Period size: 5 Copynumber: 11.2 Consensus size: 5
83901282 ATAGAAAAAT
*
83901292 TTTTA TTTTA TTTTTA TTTATT TTTTA TTTTA TTTTA TTTTA TTTTA TTTTGA
1 TTTTA TTTTA -TTTTA TTT-TA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT-A
83901345 TTTTA T
1 TTTTA T
83901351 GTTAAATTAG
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
5 35 0.71
6 14 0.29
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:83901349 original size:11 final size:10
Alignment explanation
Indices: 83901292--83901350 Score: 82
Period size: 11 Copynumber: 5.6 Consensus size: 10
83901282 ATAGAAAAAT
83901292 TTTTATTTTA
1 TTTTATTTTA
*
83901302 TTTTTATTTATT
1 -TTTTATTT-TA
83901314 TTTTATTTTA
1 TTTTATTTTA
83901324 TTTTATTTTA
1 TTTTATTTTA
83901334 TTTTATTTTGA
1 TTTTATTTT-A
83901345 TTTTAT
1 TTTTAT
83901351 GTTAAATTAG
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
10 20 0.45
11 23 0.52
12 1 0.02
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.80
Consensus pattern (10 bp):
TTTTATTTTA
Found at i:83905605 original size:19 final size:19
Alignment explanation
Indices: 83905574--83905616 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
83905564 TTTGAAAAAA
*
83905574 AAAT-ATTTGCTTGTACAT
1 AAATAATTTACTTGTACAT
*
83905592 AAATAATTTACTTGTTCAT
1 AAATAATTTACTTGTACAT
83905611 AAATAA
1 AAATAA
83905617 ATAAACTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.42, C:0.09, G:0.07, T:0.42
Consensus pattern (19 bp):
AAATAATTTACTTGTACAT
Found at i:83913165 original size:11 final size:11
Alignment explanation
Indices: 83913138--83913167 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
83913128 TTGGTGTACT
83913138 ATATTTTTACA
1 ATATTTTTACA
83913149 AT-TTTTTACA
1 ATATTTTTACA
83913159 ATATTTTTA
1 ATATTTTTA
83913168 TTAATTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (11 bp):
ATATTTTTACA
Found at i:83915511 original size:12 final size:12
Alignment explanation
Indices: 83915496--83915523 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
83915486 AAGTCAATTT
83915496 TTATAAATACTC
1 TTATAAATACTC
83915508 TTATAAATACTC
1 TTATAAATACTC
83915520 TTAT
1 TTAT
83915524 CAGGGAAGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.14, G:0.00, T:0.46
Consensus pattern (12 bp):
TTATAAATACTC
Found at i:83918028 original size:12 final size:12
Alignment explanation
Indices: 83918011--83918035 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
83918001 GATTGTTTCA
83918011 TTCTTTTCTTTT
1 TTCTTTTCTTTT
83918023 TTCTTTTCTTTT
1 TTCTTTTCTTTT
83918035 T
1 T
83918036 ACTAATATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (12 bp):
TTCTTTTCTTTT
Found at i:83918498 original size:3 final size:3
Alignment explanation
Indices: 83918417--83918482 Score: 123
Period size: 3 Copynumber: 22.0 Consensus size: 3
83918407 AATGAGTATC
*
83918417 TAA TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
83918465 TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA
83918483 AAGGAGACAA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:83921380 original size:7 final size:7
Alignment explanation
Indices: 83921368--83921395 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
83921358 TTTCTCTCTA
83921368 GTTCTTT
1 GTTCTTT
83921375 GTTCTTT
1 GTTCTTT
83921382 GTTCTTT
1 GTTCTTT
83921389 GTTCTTT
1 GTTCTTT
83921396 CTTTTATCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.00, C:0.14, G:0.14, T:0.71
Consensus pattern (7 bp):
GTTCTTT
Found at i:83922221 original size:42 final size:43
Alignment explanation
Indices: 83922143--83922228 Score: 113
Period size: 42 Copynumber: 2.0 Consensus size: 43
83922133 TTACGTTTTA
*
83922143 GAACCACACTGGCAGAGGACATAGGAGTGTGCCCAGGCCGTGT
1 GAACCACACGGGCAGAGGACATAGGAGTGTGCCCAGGCCGTGT
* * *
83922186 GAACCACACGGGCA-AGGACATGGGCA-TGTGTCCAGGTCGTGT
1 GAACCACACGGGCAGAGGACATAGG-AGTGTGCCCAGGCCGTGT
83922228 G
1 G
83922229 GCATATAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
42 24 0.63
43 14 0.37
ACGTcount: A:0.24, C:0.24, G:0.36, T:0.15
Consensus pattern (43 bp):
GAACCACACGGGCAGAGGACATAGGAGTGTGCCCAGGCCGTGT
Found at i:83924270 original size:54 final size:53
Alignment explanation
Indices: 83924212--83924320 Score: 173
Period size: 54 Copynumber: 2.0 Consensus size: 53
83924202 TAAAATTAAC
* * *
83924212 TATTTAAATGGTAATTTCATTTTTTTTAATGTTAAATTTTTTGATAAGTAATAA
1 TATTTAAATGGTAATTTCATGTCTTTTAATATT-AATTTTTTGATAAGTAATAA
*
83924266 TATTTAAATGGTAATTTCATGTCTTTTACTATTAATTTTTTGATAAGTAATAA
1 TATTTAAATGGTAATTTCATGTCTTTTAATATTAATTTTTTGATAAGTAATAA
83924319 TA
1 TA
83924321 ATATTTTTTA
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
53 22 0.43
54 29 0.57
ACGTcount: A:0.35, C:0.04, G:0.09, T:0.52
Consensus pattern (53 bp):
TATTTAAATGGTAATTTCATGTCTTTTAATATTAATTTTTTGATAAGTAATAA
Found at i:83929118 original size:20 final size:20
Alignment explanation
Indices: 83929093--83929143 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
83929083 TATAATTTCA
83929093 AATTTTTGATA-TATTCTTTT
1 AATTTTTGATAGT-TTCTTTT
*
83929113 AATTTTCT-AAAGTTTCTTTT
1 AATTTT-TGATAGTTTCTTTT
83929133 AATTTTTGATA
1 AATTTTTGATA
83929144 CATTTACAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 1 0.04
20 23 0.88
21 2 0.08
ACGTcount: A:0.27, C:0.06, G:0.06, T:0.61
Consensus pattern (20 bp):
AATTTTTGATAGTTTCTTTT
Found at i:83935579 original size:16 final size:17
Alignment explanation
Indices: 83935555--83935600 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 17
83935545 CATGTTTTTG
*
83935555 TCATGTATTTTTTG-TA
1 TCATATATTTTTTGATA
83935571 TCATATATTTTTTGTACTA
1 TCATATATTTTTTG-A-TA
83935590 TCATATATTTT
1 TCATATATTTT
83935601 GTTAACTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 13 0.50
19 13 0.50
ACGTcount: A:0.24, C:0.09, G:0.07, T:0.61
Consensus pattern (17 bp):
TCATATATTTTTTGATA
Found at i:83936500 original size:131 final size:129
Alignment explanation
Indices: 83936310--83936646 Score: 281
Period size: 130 Copynumber: 2.6 Consensus size: 129
83936300 TTGACAATTA
* * * * * ** *
83936310 GAGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAATGATCGAACAT-TCTT
1 GAGAATCGTGCCCTATCGTGCTGGGTTGCGATTTTTCATTGGCTCAAAACAATCGAACATCCCTT
**
83936374 T-ATATTCTCACTCATGTTT-ATAAAAAAT-TACTTAAAAACG-AAGACGATGTTCAATATTTGG
66 TGA-ATT-TCACTCACATTTCAT--AAAATCT--TTAAAAACGAAAG-CGATGTTCAATATTTGG
83936435 CGATTT
124 CGATTT
* * * *
83936441 GAGAATCGTGCCCTATCGTGCTGGGTTGCGCTTTTTCATTGGTTCGAAACAATTGAACATCCCTT
1 GAGAATCGTGCCCTATCGTGCTGGGTTGCGATTTTTCATTGGCTCAAAACAATCGAACATCCCTT
* * * * *
83936506 TGGAATTTCACTCACATTTCCTAAAATCTTTCAAAATGAAAGCGATGTTCGATGTTTGGCGATTT
66 T-GAATTTCACTCACATTTCATAAAATCTTTAAAAACGAAAGCGATGTTCAATATTTGGCGATTT
* * * * * * * *
83936571 GAGAATCGAGCCCTATCATGTTGGGTTGCGTTTTTTTATTTG-TCCAAAATAATCGAATATCTCC
1 GAGAATCGTGCCCTATCGTGCTGGGTTGCGATTTTTCATTGGCT-CAAAACAATCGAACATC-CC
**
83936635 TCGGAATTTCAC
64 TTTGAATTTCAC
83936647 ACGTATCTTA
Statistics
Matches: 167, Mismatches: 31, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
129 1 0.01
130 86 0.51
131 60 0.36
132 15 0.09
133 4 0.02
134 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (129 bp):
GAGAATCGTGCCCTATCGTGCTGGGTTGCGATTTTTCATTGGCTCAAAACAATCGAACATCCCTT
TGAATTTCACTCACATTTCATAAAATCTTTAAAAACGAAAGCGATGTTCAATATTTGGCGATTT
Found at i:83943295 original size:205 final size:205
Alignment explanation
Indices: 83942943--83943355 Score: 790
Period size: 205 Copynumber: 2.0 Consensus size: 205
83942933 ATGGACAACT
*
83942943 TTGAATACACATATAAGTAAACAGTGAAATTATAGATAATGTTACTTATAAGCGTGATATATATA
1 TTGAATACACATATAAGTAAACAGTGAAATTATAGATAATGTTACTTATAAGCATGATATATATA
*
83943008 CATTAAGGATGTGAAATGGAGAGGAGGAGGAGGAAAATATATGAATGACTTGTGTATAAATTGAT
66 CATTAAGGATGTGAAATAGAGAGGAGGAGGAGGAAAATATATGAATGACTTGTGTATAAATTGAT
83943073 CACATGCCCGATTATAATCGATAAACGTTGAATTAGAAATGATATAATGTTTTATTTCATATGTT
131 CACATGCCCGATTATAATCGATAAACGTTGAATTAGAAATGATATAATGTTTTATTTCATATGTT
83943138 CGTTATTAAA
196 CGTTATTAAA
*
83943148 TTGAATACACATATAAGTAAATAGTGAAATTATAGATAATGTTACTTATAAGCATGATATATATA
1 TTGAATACACATATAAGTAAACAGTGAAATTATAGATAATGTTACTTATAAGCATGATATATATA
*
83943213 CATTAAGGATGTGAAATAGAGAGGAGGAGGAGGAAAATATATGAATGACTTGTGTATAAGTTGAT
66 CATTAAGGATGTGAAATAGAGAGGAGGAGGAGGAAAATATATGAATGACTTGTGTATAAATTGAT
83943278 CACATGCCCGATTATAATCGATAAACGTTGAATTAGAAATGATATAATGTTTTATTTCATATGTT
131 CACATGCCCGATTATAATCGATAAACGTTGAATTAGAAATGATATAATGTTTTATTTCATATGTT
83943343 CGTTATTAAA
196 CGTTATTAAA
83943353 TTG
1 TTG
83943356 TAAATATTGT
Statistics
Matches: 204, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
205 204 1.00
ACGTcount: A:0.40, C:0.08, G:0.19, T:0.34
Consensus pattern (205 bp):
TTGAATACACATATAAGTAAACAGTGAAATTATAGATAATGTTACTTATAAGCATGATATATATA
CATTAAGGATGTGAAATAGAGAGGAGGAGGAGGAAAATATATGAATGACTTGTGTATAAATTGAT
CACATGCCCGATTATAATCGATAAACGTTGAATTAGAAATGATATAATGTTTTATTTCATATGTT
CGTTATTAAA
Found at i:83943550 original size:50 final size:50
Alignment explanation
Indices: 83943486--83943648 Score: 222
Period size: 50 Copynumber: 3.3 Consensus size: 50
83943476 CAATATGTGA
* *
83943486 TATGTGAATATGTGATTCCGTATAAGACCATAGTTGGGCTATGGCATCTG
1 TATGTGAATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCTG
* * *
83943536 TATGTGATTATGTGATTCCGTGTAAGACCATAGCTGGACTATGGCATCGG
1 TATGTGAATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCTG
* * * *
83943586 TATGTG-ATATGTGATTACGTGTACGACCATAGCTGTGCTATGACAT-TG
1 TATGTGAATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCTG
83943634 ATATGTGAATATGTG
1 -TATGTGAATATGTG
83943649 TAAGACCATA
Statistics
Matches: 99, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
48 1 0.01
49 40 0.40
50 58 0.59
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.34
Consensus pattern (50 bp):
TATGTGAATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCTG
Found at i:83943650 original size:42 final size:41
Alignment explanation
Indices: 83943590--83943711 Score: 154
Period size: 42 Copynumber: 2.9 Consensus size: 41
83943580 CATCGGTATG
* * * *
83943590 TGATATGTGATTACGTGTACGACCATAGCTGTGCTATGACA
1 TGATATGTGAATATGTGTAAGACCATAGCTGGGCTATGACA
83943631 TTGATATGTGAATATGTGTAAGACCATAGCTGGGCTATGACA
1 -TGATATGTGAATATGTGTAAGACCATAGCTGGGCTATGACA
* * * *
83943673 TCATTATGTGAAGATGTGTAAGACCATAGTTGGACTATG
1 TGA-TATGTGAATATGTGTAAGACCATAGCTGGGCTATG
83943712 GCATCGAGGA
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
41 2 0.03
42 69 0.97
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (41 bp):
TGATATGTGAATATGTGTAAGACCATAGCTGGGCTATGACA
Found at i:83946690 original size:10 final size:10
Alignment explanation
Indices: 83946677--83946715 Score: 62
Period size: 10 Copynumber: 4.0 Consensus size: 10
83946667 ATTTCATGTT
83946677 ATTTAAAAAA
1 ATTTAAAAAA
83946687 ATTT-AAAAA
1 ATTTAAAAAA
*
83946696 ATTTATAAAA
1 ATTTAAAAAA
83946706 ATTTAAAAAA
1 ATTTAAAAAA
83946716 GGGTCCATAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
9 9 0.35
10 17 0.65
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (10 bp):
ATTTAAAAAA
Found at i:83946696 original size:9 final size:9
Alignment explanation
Indices: 83946677--83946715 Score: 60
Period size: 9 Copynumber: 4.1 Consensus size: 9
83946667 ATTTCATGTT
83946677 ATTTAAAAAA
1 ATTT-AAAAA
83946687 ATTTAAAAA
1 ATTTAAAAA
83946696 ATTTATAAAA
1 ATTTA-AAAA
83946706 ATTTAAAAA
1 ATTTAAAAA
83946715 A
1 A
83946716 GGGTCCATAC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 15 0.54
10 13 0.46
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
ATTTAAAAA
Found at i:83946705 original size:19 final size:19
Alignment explanation
Indices: 83946677--83946715 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
83946667 ATTTCATGTT
83946677 ATTTAAAAAAATTTAAAAA
1 ATTTAAAAAAATTTAAAAA
*
83946696 ATTTATAAAAATTTAAAAA
1 ATTTAAAAAAATTTAAAAA
83946715 A
1 A
83946716 GGGTCCATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
ATTTAAAAAAATTTAAAAA
Found at i:83952169 original size:47 final size:43
Alignment explanation
Indices: 83952105--83952195 Score: 128
Period size: 43 Copynumber: 2.0 Consensus size: 43
83952095 CAAATAAAAA
83952105 TGCATACTTTTTAAAAAAAAATATATTTTAAAAATTTATAAATTGGT
1 TGCATACTTTTT---AAAAAA-ATATTTTAAAAATTTATAAATTGGT
* *
83952152 TGCATACTTTTTTAAAAAATATTTTATAAATTTATAAATTGGT
1 TGCATACTTTTTAAAAAAATATTTTAAAAATTTATAAATTGGT
83952195 T
1 T
83952196 CAACCAGTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
43 25 0.60
44 5 0.12
47 12 0.29
ACGTcount: A:0.43, C:0.04, G:0.07, T:0.46
Consensus pattern (43 bp):
TGCATACTTTTTAAAAAAATATTTTAAAAATTTATAAATTGGT
Found at i:83954692 original size:20 final size:20
Alignment explanation
Indices: 83954667--83954705 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
83954657 ATTAGAACAC
83954667 ACCATACCCACAATATATGA
1 ACCATACCCACAATATATGA
*
83954687 ACCATACCCATAATATATG
1 ACCATACCCACAATATATG
83954706 TACAGAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (20 bp):
ACCATACCCACAATATATGA
Found at i:83954835 original size:20 final size:21
Alignment explanation
Indices: 83954810--83954849 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
83954800 ATTATTTTAT
*
83954810 TTTATT-TTATAAATAAAATA
1 TTTATTATTAAAAATAAAATA
83954830 TTTATTAATTAAAAATAAAA
1 TTTATT-ATTAAAAATAAAA
83954850 AAATTAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
22 11 0.65
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TTTATTATTAAAAATAAAATA
Found at i:83966741 original size:15 final size:15
Alignment explanation
Indices: 83966721--83966753 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
83966711 AAAGTAACTT
*
83966721 TAATAATAATGATAA
1 TAATAATAAAGATAA
83966736 TAATAATAAAGATAA
1 TAATAATAAAGATAA
83966751 TAA
1 TAA
83966754 AATGAAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (15 bp):
TAATAATAAAGATAA
Found at i:83973915 original size:10 final size:10
Alignment explanation
Indices: 83973900--83973929 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
83973890 AAAGGTTGAT
83973900 GGCCAAAAAA
1 GGCCAAAAAA
83973910 GGCCAAAAAA
1 GGCCAAAAAA
83973920 GGCCAAAAAA
1 GGCCAAAAAA
83973930 TACAATTAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.60, C:0.20, G:0.20, T:0.00
Consensus pattern (10 bp):
GGCCAAAAAA
Found at i:83981226 original size:46 final size:46
Alignment explanation
Indices: 83981176--83981348 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
83981166 TGGTTGAGCA
83981176 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
83981222 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
83981267 CATCAGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
83981315 CCCGAGCTGGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
83981349 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:83981332 original size:93 final size:93
Alignment explanation
Indices: 83981173--83981343 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
83981163 GGATGGTTGA
* * *
83981173 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCAGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83981238 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
83981266 GCATCAGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTGGTTGAGT
1 GCATCAGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83981331 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
83981344 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCAGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:83983339 original size:11 final size:11
Alignment explanation
Indices: 83983325--83983350 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
83983315 TTCACATGTT
83983325 TTAATTATAAA
1 TTAATTATAAA
83983336 TTAATTATAAA
1 TTAATTATAAA
83983347 TTAA
1 TTAA
83983351 ATACAATTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
TTAATTATAAA
Found at i:83989973 original size:29 final size:29
Alignment explanation
Indices: 83989931--83990012 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
83989921 TATTTTTTTT
83989931 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
83989960 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
83989989 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCATGCACACTTAGTGCC
83990013 TATCTCGTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:83994445 original size:26 final size:25
Alignment explanation
Indices: 83994392--83994446 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
83994382 TTTTGATATA
* * *
83994392 AAAAATTATGTTAATTTTATTTTTT
1 AAAAATTATGCTAATTTTATTATGT
*
83994417 AAAAATTGTGCTAATTTTATTGATGT
1 AAAAATTATGCTAATTTTATT-ATGT
83994443 AAAA
1 AAAA
83994447 TATAGTTATT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.40, C:0.02, G:0.09, T:0.49
Consensus pattern (25 bp):
AAAAATTATGCTAATTTTATTATGT
Found at i:83994881 original size:264 final size:263
Alignment explanation
Indices: 83994408--83994919 Score: 701
Period size: 264 Copynumber: 1.9 Consensus size: 263
83994398 TATGTTAATT
* * * *
83994408 TTATTTTTTAAAAATTGTGCTAATTTTATTGATGTAAAATATAGTTATTACTTTAATAGAACTCT
1 TTATTTTTTAAAAATTGTACTAATTTTATTGAGGTAAAATAGAGTTATTACTTGAATAGAACTCT
* * * * *
83994473 AAGCATCTTAATTATCACATTGAATAGAACTGTAAGTATAAAATAATTACAATTTAGTTTAGAAT
66 AAGCATCTTAATTACCACATTGAATAAAACTGTAAGCATAAAATAATTAAAATTTAATTTAGAAT
* * * * *
83994538 TTGTTAGTTAAAAAAATTGTGCTAATTTTAAAATAGAGTTATTACTTGAATAGAACTCTAAGCAT
131 TTATTAATTAAAAAAATTGTGCTAATTTTAAAATAAAGTTATTACTTAAATAGAACTCTAAACAT
* *
83994603 AAAATATAAAAAATTTATGATAATTAGATTTAGAATTTAATTCA-AAATTATTAGTTAAAATTTT
196 AAAATATAAAAAA-TTATGATAATTAAAATTAGAATTTAATTCATAAA-TATTAGTTAAAATTTT
83994667 TACTC
259 TACTC
** *
83994672 TTATTTTTTTTAAATTGTACTAATTTTATTGAGGTAAAATAGAGTTATTACTTGAATAGAATTCT
1 TTATTTTTTAAAAATTGTACTAATTTTATTGAGGTAAAATAGAGTTATTACTTGAATAGAACTCT
* ** *
83994737 GAGTGTCTTAATTACCACTTTGAATAAAACT-TGAAGCATAAAATAATTAAAATTTAATTTAGAA
66 AAGCATCTTAATTACCACATTGAATAAAACTGT-AAGCATAAAATAATTAAAATTTAATTTAGAA
* *
83994801 -TTATTAATT-AAAAATTTGTGCTAATTTTAAAATAAAAG-TATTACTTAAATGGAACTCTAAAC
130 TTTATTAATTAAAAAAATTGTGCTAATTTTAAAAT-AAAGTTATTACTTAAATAGAACTCTAAAC
*
83994863 ATAAAATCTAAGAAAAATTATGATAATTAAAATTAGAATTTAATTCATAAATATTAG
194 ATAAAATAT-A-AAAAATTATGATAATTAAAATTAGAATTTAATTCATAAATATTAG
83994920 GTTCACATAT
Statistics
Matches: 217, Mismatches: 26, Indels: 11
0.85 0.10 0.04
Matches are distributed among these distances:
262 52 0.24
263 46 0.21
264 119 0.55
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40
Consensus pattern (263 bp):
TTATTTTTTAAAAATTGTACTAATTTTATTGAGGTAAAATAGAGTTATTACTTGAATAGAACTCT
AAGCATCTTAATTACCACATTGAATAAAACTGTAAGCATAAAATAATTAAAATTTAATTTAGAAT
TTATTAATTAAAAAAATTGTGCTAATTTTAAAATAAAGTTATTACTTAAATAGAACTCTAAACAT
AAAATATAAAAAATTATGATAATTAAAATTAGAATTTAATTCATAAATATTAGTTAAAATTTTTA
CTC
Found at i:83996661 original size:17 final size:17
Alignment explanation
Indices: 83996639--83996672 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
83996629 GTTAGCGAAT
83996639 AAATATTTAAATATAAA
1 AAATATTTAAATATAAA
*
83996656 AAATATTTATATATAAA
1 AAATATTTAAATATAAA
83996673 TTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
AAATATTTAAATATAAA
Found at i:84001490 original size:48 final size:48
Alignment explanation
Indices: 84001430--84001567 Score: 188
Period size: 48 Copynumber: 2.9 Consensus size: 48
84001420 ACCATGGTTA
* * *
84001430 ATGAGAGCCAGTGTAAGACCATGTTTGGGATATGGCATCGGCGTTGAT
1 ATGATAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGCATTGAT
*
84001478 ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAT
1 ATGATAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGCATTGAT
* * * *
84001526 ATG-TGTGCCAGTGTAAGACAATATCTGGGATATGGCGTCGGC
1 ATGAT-AGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGC
84001568 CACGGTATGT
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
47 1 0.01
48 79 0.99
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (48 bp):
ATGATAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGCATTGAT
Found at i:84001577 original size:48 final size:48
Alignment explanation
Indices: 84001436--84001611 Score: 155
Period size: 48 Copynumber: 3.6 Consensus size: 48
84001426 GTTAATGAGA
* * * *
84001436 GCCAGTGTAAGACCATGTTTGGGATATGGCATCGGCGTTGATA--TGAT
1 GCCAGTGTAAGA-CATATCTGGGATATGGCATCGGCATCGATATGTGAT
* * *
84001483 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTG-T
1 -GCCAGTGTAAGA-CATATCTGGGATATGGCATCGGCATCGATATGTGAT
* *
84001532 GCCAGTGTAAGACAATATCTGGGATATGGCGTCGGCCA-CGGTATGTGAT
1 GCCAGTGTAAGAC-ATATCTGGGATATGGCATCGG-CATCGATATGTGAT
** *
84001581 TTCA-TGTAAGATCGTATCTGGGATATGGCAT
1 GCCAGTGTAAGA-CATATCTGGGATATGGCAT
84001612 TGATATGAGA
Statistics
Matches: 110, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
47 1 0.01
48 100 0.91
49 7 0.06
50 2 0.02
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.28
Consensus pattern (48 bp):
GCCAGTGTAAGACATATCTGGGATATGGCATCGGCATCGATATGTGAT
Found at i:84001641 original size:42 final size:42
Alignment explanation
Indices: 84001537--84001811 Score: 201
Period size: 42 Copynumber: 6.3 Consensus size: 42
84001527 TGTGTGCCAG
* * *
84001537 TGTAAGACAATATCTGGGATATGGCGTCGGCCACGGTATGTGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATC-G--A---TATGAGATTTCA
* * *
84001585 TGTAAGATCGTATCTGGGATATGGCATTGATATGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
*
84001627 TGTAAGACCATATCTGGGATATGGCATTGATATGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
** * * * ** *
84001669 TGTAAGACCATGGCTGGGACATGGCATCGATGTGAGGTCCCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
* * * * * **
84001711 TGTAAGACCATGTCTAGTACATGGCATCGACACTAACGTGAAATTTTG
1 TGTAAGACCATATCTGGGATATGGCATCG--A-T-A--TGAGATTTCA
* **
84001759 TATAAGACCATATCTGGGATATGGCATCGATATGTAGA-CCCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATG-AGATTTCA
84001801 TGTAAGACCAT
1 TGTAAGACCAT
84001812 GTCTCGGACA
Statistics
Matches: 183, Mismatches: 37, Indels: 20
0.76 0.15 0.08
Matches are distributed among these distances:
42 122 0.67
43 2 0.01
44 2 0.01
45 3 0.02
46 1 0.01
47 1 0.01
48 52 0.28
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
Found at i:84003904 original size:80 final size:80
Alignment explanation
Indices: 84003820--84003968 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
84003810 TATGGTAACC
* * * *
84003820 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
84003884 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
84003900 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
84003965 CCGG
66 CCGG
84003969 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:84003910 original size:40 final size:38
Alignment explanation
Indices: 84003861--84003968 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
84003851 ATCACGATTT
*
84003861 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
84003901 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
84003941 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
84003969 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:84012007 original size:38 final size:38
Alignment explanation
Indices: 84011957--84012056 Score: 130
Period size: 38 Copynumber: 2.6 Consensus size: 38
84011947 ATCACGATTT
*
84011957 GCACAAATGCCTTCGGGTCTTAGCCCGGA-TAGAAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAGTAGAAACTA
**
84011995 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGA-GTAGAAACTA
84012035 GCACAATTGCCTTCGGGTCTTA
1 GCACAA-TGCCTTCGGGTCTTA
84012057 ACCGGTTATA
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
38 28 0.51
39 2 0.04
40 25 0.45
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGAGTAGAAACTA
Found at i:84014473 original size:24 final size:25
Alignment explanation
Indices: 84014446--84014523 Score: 99
Period size: 24 Copynumber: 3.2 Consensus size: 25
84014436 TTTGCACTCG
* *
84014446 TAGTGCTA-ATTACACTCGCACACA
1 TAGTGCCATATTAAACTCGCACACA
*
84014470 TAGTGCCATAGTAAAC-CGCACACA
1 TAGTGCCATATTAAACTCGCACACA
*
84014494 TAGTGCCATTTTAAACT-GCACACA
1 TAGTGCCATATTAAACTCGCACACA
84014518 TAGTGC
1 TAGTGC
84014524 ATTGGATATT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
24 42 0.89
25 5 0.11
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.24
Consensus pattern (25 bp):
TAGTGCCATATTAAACTCGCACACA
Found at i:84019160 original size:9 final size:9
Alignment explanation
Indices: 84019146--84019172 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
84019136 AAAACATGTT
84019146 CTTATTTAA
1 CTTATTTAA
84019155 CTTATTTAA
1 CTTATTTAA
84019164 CTTATTTAA
1 CTTATTTAA
84019173 TGTTCACATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.00, T:0.56
Consensus pattern (9 bp):
CTTATTTAA
Found at i:84024802 original size:40 final size:39
Alignment explanation
Indices: 84024728--84024952 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 39
84024718 AACCCAAGTA
* *
84024728 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTAGCACAAATG
*
84024767 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
*
84024807 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTA---GCACAAATG
* *
84024850 CCTTCGGGACTTCGCCCAGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
* * *
84024890 CCTTCGGGACTTAGCCTGGATATAGGAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATA-GCACTAGCACAAATG
84024930 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
84024953 CATCCGAATA
Statistics
Matches: 164, Mismatches: 14, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
39 13 0.08
40 113 0.69
41 2 0.01
43 35 0.21
44 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGCACTAGCACAAATG
Found at i:84024848 original size:83 final size:80
Alignment explanation
Indices: 84024728--84024952 Score: 353
Period size: 83 Copynumber: 2.8 Consensus size: 80
84024718 AACCCAAGTA
* *
84024728 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
84024792 TCACTAGCACAAATG
66 TCACTAGCACAAATG
* * *
84024807 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCAGATA
1 CCTTCGGGACTTAGCCCGGATATAGC-A--ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
84024872 TAGTCACTAGCACAAATG
63 TAGTCACTAGCACAAATG
* *
84024890 CCTTCGGGACTTAGCCTGGATATAGGAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
84024953 CATCCGAATA
Statistics
Matches: 132, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
79 13 0.10
80 44 0.33
81 1 0.01
82 1 0.01
83 73 0.55
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAATG
Found at i:84042445 original size:27 final size:27
Alignment explanation
Indices: 84042415--84042610 Score: 236
Period size: 27 Copynumber: 7.3 Consensus size: 27
84042405 TACTGAAATG
**
84042415 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* * *
84042442 CCCTCGATTTATAGAATTGCCGTTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
84042469 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
*
84042496 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
84042523 CCCTC-ATTTACA-AATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
84042548 CCCTCAATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* * **
84042575 CCCT-TAGTTTACAAAATTACTGTTTTA
1 CCCTCGA-TTTACAGAATTACCATTTTA
84042602 CCCTCGATT
1 CCCTCGATT
84042611 GTGAAATTAC
Statistics
Matches: 151, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
25 18 0.12
26 14 0.09
27 118 0.78
28 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCATTTTA
Found at i:84042629 original size:26 final size:26
Alignment explanation
Indices: 84042600--84042762 Score: 109
Period size: 26 Copynumber: 6.2 Consensus size: 26
84042590 ATTACTGTTT
* **
84042600 TACCCTCGATTGTGAAATTACTGAAA
1 TACCCTCGATTGTAAAATTACCAAAA
* *
84042626 TACCC-CTG-TAGGATAAATTACCAAAA
1 TACCCTC-GATTGTA-AAATTACCAAAA
*
84042652 TACCC-CTAGTTGTAAAATTACCAAAA
1 TACCCTCGA-TTGTAAAATTACCAAAA
* * *
84042678 TACCCCTAGTTTGTAAAATTA-CGAAA
1 TA-CCCTCGATTGTAAAATTACCAAAA
* * * * *
84042704 TACCACTGGTTTGTGAAATTATCGAAA
1 TACC-CTCGATTGTAAAATTACCAAAA
*
84042731 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGA-TTGTAAAATTACCAAAA
84042758 TACCC
1 TACCC
84042763 CTATTTACAA
Statistics
Matches: 108, Mismatches: 20, Indels: 17
0.74 0.14 0.12
Matches are distributed among these distances:
25 5 0.05
26 58 0.54
27 45 0.42
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (26 bp):
TACCCTCGATTGTAAAATTACCAAAA
Found at i:84042699 original size:27 final size:27
Alignment explanation
Indices: 84042640--84042765 Score: 159
Period size: 26 Copynumber: 4.7 Consensus size: 27
84042630 CCTGTAGGAT
84042640 AAATTACCAAAATACCCCTAG-TTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
84042666 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
84042693 AAATTA-CGAAATACCACTGGTTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTA
* * *
84042719 AAATTATCGAAATA-CCCTCAATTTGTA
1 AAATTACCAAAATACCCCT-AGTTTGTA
84042746 AAATTACCAAAATACCCCTA
1 AAATTACCAAAATACCCCTA
84042766 TTTACAAAAT
Statistics
Matches: 86, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
26 46 0.53
27 36 0.42
28 4 0.05
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:84042732 original size:53 final size:52
Alignment explanation
Indices: 84042609--84042761 Score: 152
Period size: 53 Copynumber: 2.9 Consensus size: 52
84042599 TTACCCTCGA
* * *
84042609 TTGTGAAATTACTGAAATACCCCT-G-TAGGATAAATTACCAAAATACCCCTAG
1 TTGTGAAATTAC-GAAATACCCCTAGTTTGTA-AAATTACCAAAATACCACTAG
* * * *
84042661 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTA-CGAAATACCACTGG
1 TTGTGAAATTA-CGAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTAG
*
84042713 TTTGTGAAATTATCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACC
1 -TTGTGAAATTA-CGAAATACCCCT-AGTTTGTAAAATTACCAAAATACC
84042762 CCTATTTACA
Statistics
Matches: 83, Mismatches: 12, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
52 35 0.42
53 37 0.45
54 11 0.13
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (52 bp):
TTGTGAAATTACGAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTAG
Found at i:84042776 original size:53 final size:54
Alignment explanation
Indices: 84042640--84042802 Score: 163
Period size: 53 Copynumber: 3.1 Consensus size: 54
84042630 CCTGTAGGAT
* * * *
84042640 AAATTACCAAAATACCCCTAGTTGTAAAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCCTATTTGTAAAATTAACGAAATACCCTCTAATTTGTA
* * * * *
84042693 AAATTA-CGAAATACCACTGGTTTGTGAAATTATCGAAATACCCTC-AATTTGTA
1 AAATTACCAAAATACCCCT-ATTTGTAAAATTAACGAAATACCCTCTAATTTGTA
** * *
84042746 AAATTACCAAAATACCCCTATTTACAAAATTAAAGAAATACCCT-TAACTTTCTA
1 AAATTACCAAAATACCCCTATTTGTAAAATTAACGAAATACCCTCTAA-TTTGTA
84042800 AAA
1 AAA
84042803 ATTATAGAAA
Statistics
Matches: 88, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
52 10 0.11
53 59 0.67
54 19 0.22
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.29
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTATTTGTAAAATTAACGAAATACCCTCTAATTTGTA
Found at i:84042839 original size:27 final size:26
Alignment explanation
Indices: 84042800--84042850 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 26
84042790 TAACTTTCTA
84042800 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACC-TTGGTTTAC
84042827 AAAATTACT-GAAATACCTTGGTTT
1 AAAATTA-TAGAAATACCTTGGTTT
84042851 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
26 7 0.30
27 15 0.65
28 1 0.04
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (26 bp):
AAAATTATAGAAATACCTTGGTTTAC
Found at i:84043803 original size:25 final size:25
Alignment explanation
Indices: 84043765--84043834 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
84043755 GAGAAGTGCT
* *
84043765 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
84043790 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
84043815 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
84043835 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:84043847 original size:24 final size:24
Alignment explanation
Indices: 84043764--84043859 Score: 95
Period size: 25 Copynumber: 3.9 Consensus size: 24
84043754 GGAGAAGTGC
*
84043764 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAGTTTA-T
* *
84043789 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
84043813 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
84043837 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
84043860 ATATGATAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
23 5 0.08
24 11 0.18
25 43 0.72
26 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:84043858 original size:50 final size:50
Alignment explanation
Indices: 84043765--84043859 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
84043755 GAGAAGTGCT
**
84043765 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
* **
84043815 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
84043860 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:84044087 original size:30 final size:30
Alignment explanation
Indices: 84044053--84044134 Score: 139
Period size: 30 Copynumber: 2.7 Consensus size: 30
84044043 CCTTTACAGT
84044053 AAAGGCTTCGGCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCAGTGATATGATTTATGA
*
84044083 AAAGGCTTTGGCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCAGTGATATGATTTATGA
84044113 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGG-CCAGTGATATG
84044135 TCGAGACCGG
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
30 44 0.90
31 5 0.10
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
AAAGGCTTCGGCCAGTGATATGATTTATGA
Found at i:84046389 original size:27 final size:27
Alignment explanation
Indices: 84046359--84046557 Score: 220
Period size: 27 Copynumber: 7.3 Consensus size: 27
84046349 TACTGAAATG
* *
84046359 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* * *
84046386 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAAAATTACCATTTTA
* *
84046413 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* *
84046440 CCCTCGATTTATAGAATCACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* *
84046467 CCCTCGATTTACAAAAATTACCGTTTTA
1 CCCTCGATTTA-TAAAATTACCATTTTA
*
84046495 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* * ***
84046522 CCCT-TAGTTTACAAAATTATTGTTTTA
1 CCCTCGA-TTTATAAAATTACCATTTTA
84046549 CCCTCGATT
1 CCCTCGATT
84046558 GTGAAATTAC
Statistics
Matches: 148, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 123 0.83
28 24 0.16
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTATAAAATTACCATTTTA
Found at i:84046431 original size:54 final size:54
Alignment explanation
Indices: 84046359--84046557 Score: 265
Period size: 54 Copynumber: 3.7 Consensus size: 54
84046349 TACTGAAATG
** * * * *
84046359 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTA
*
84046413 CCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATCACCATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTA
* *
84046467 CCCTCGATTTACAAAAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTAC-AAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTA
* **
84046522 CCCT-TAGTTTACAAAATTATTGTTTTACCCTCGATT
1 CCCTCGA-TTTACAAAATTACCGTTTTACCCTCGATT
84046558 GTGAAATTAC
Statistics
Matches: 130, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
54 82 0.63
55 48 0.37
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.39
Consensus pattern (54 bp):
CCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTA
Found at i:84046548 original size:82 final size:81
Alignment explanation
Indices: 84046377--84046557 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
84046367 TTGTAGAATT
* * *
84046377 ACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTACAAAATTACCGTTTTACC
1 ACCATTTTACCCTCGATTTAAAAAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACC
* * *
84046442 CTCGATTTATAGAATC
66 CTAGATTTACAAAATC
*
84046458 ACCATTTTACCCTCGATTTACAAAAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTAC
1 ACCATTTTACCCTCGATTTA-AAAAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTAC
*
84046523 CCTTAG-TTTACAAAATT
65 CC-TAGATTTACAAAATC
***
84046540 ATTGTTTTACCCTCGATT
1 ACCATTTTACCCTCGATT
84046558 GTGAAATTAC
Statistics
Matches: 87, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
81 20 0.23
82 65 0.75
83 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.39
Consensus pattern (81 bp):
ACCATTTTACCCTCGATTTAAAAAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACC
CTAGATTTACAAAATC
Found at i:84046602 original size:27 final size:27
Alignment explanation
Indices: 84046561--84046769 Score: 118
Period size: 27 Copynumber: 7.7 Consensus size: 27
84046551 CTCGATTGTG
**
84046561 AAATTACTGAAATACCCCT-GTAAGATA
1 AAATTACCAAAATACCCCTAGTAAG-TA
* * **
84046588 GAATTACCAATATACCCCTAGTGTGTA
1 AAATTACCAAAATACCCCTAGTAAGTA
**
84046615 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTAAGTA
* * * ** *
84046642 AAATTACCGAAATATCACTAGTTTGTG
1 AAATTACCAAAATACCCCTAGTAAGTA
* * **
84046669 AAATTACCGAAATA-CCCTAAATTTGTA
1 AAATTACCAAAATACCCCT-AGTAAGTA
* * * ** *
84046696 AAATTACCGAAATATCACTAGTTTGTG
1 AAATTACCAAAATACCCCTAGTAAGTA
* * **
84046723 AAATTACCGAAATA-CCCTAAATTTGTA
1 AAATTACCAAAATACCCCT-AGTAAGTA
84046750 AAATTACCAAAATACCCCTA
1 AAATTACCAAAATACCCCTA
84046770 TTTTACAAAA
Statistics
Matches: 154, Mismatches: 23, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
26 6 0.04
27 138 0.90
28 10 0.06
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTAAGTA
Found at i:84046630 original size:54 final size:54
Alignment explanation
Indices: 84046561--84046793 Score: 177
Period size: 54 Copynumber: 4.3 Consensus size: 54
84046551 CTCGATTGTG
* * *
84046561 AAATTACTGAAATACCCCT-GTAAGATAGAATTACC-AATATACCCCTAGTGTGTA
1 AAATTACCGAAATACCCCTAGTAAG-TAAAATTACCGAA-ATACCACTAGTGTGTA
* ** * * *
84046615 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATATCACTAGTTTGTG
1 AAATTACCGAAATACCCCTAGTAAGTAAAATTACCGAAATACCACTAGTGTGTA
* ** * * *
84046669 AAATTACCGAAATA-CCCTAAATTTGTAAAATTACCGAAATATCACTAGTTTGTG
1 AAATTACCGAAATACCCCT-AGTAAGTAAAATTACCGAAATACCACTAGTGTGTA
* ** * * * * **
84046723 AAATTACCGAAATA-CCCTAAATTTGTAAAATTACCAAAATACCCCTATTTTACA
1 AAATTACCGAAATACCCCT-AGTAAGTAAAATTACCGAAATACCACTAGTGTGTA
*
84046777 AAATTACAGAAATACCC
1 AAATTACCGAAATACCC
84046794 TTAACTTTCT
Statistics
Matches: 156, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
53 4 0.03
54 145 0.93
55 7 0.04
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (54 bp):
AAATTACCGAAATACCCCTAGTAAGTAAAATTACCGAAATACCACTAGTGTGTA
Found at i:84046779 original size:27 final size:27
Alignment explanation
Indices: 84046589--84046793 Score: 209
Period size: 27 Copynumber: 7.6 Consensus size: 27
84046579 TGTAAGATAG
* *
84046589 AATTACCAATATACCCCTAGTGTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
84046616 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
84046643 AATTACCGAAATATCACTAGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
84046670 AATTACCGAAATA-CCCTAAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
* * * *
84046697 AATTACCGAAATATCACTAGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
84046724 AATTACCGAAATA-CCCTAAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
* **
84046751 AATTACCAAAATACCCCTATTTTACAA
1 AATTACCAAAATACCCCTAGTTTGTAA
84046778 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
84046794 TTAACTTTCT
Statistics
Matches: 154, Mismatches: 19, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.05
27 139 0.90
28 7 0.05
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:84046780 original size:81 final size:81
Alignment explanation
Indices: 84046589--84046792 Score: 241
Period size: 81 Copynumber: 2.5 Consensus size: 81
84046579 TGTAAGATAG
* * * * *
84046589 AATTACCAATATACCCCTAGTGTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAA
1 AATTACCAAAATACCCCTAATTTGTAAAATTACCGAAATACCACTAGTTTGTAAAATTACCGAAA
* *
84046654 TATCACTAGTTTGTGA
66 TATCACTAATTTGTAA
* * *
84046670 AATTACCGAAATA-CCCTAAATTTGTAAAATTACCGAAATATCACTAGTTTGTGAAATTACCGAA
1 AATTACCAAAATACCCCT-AATTTGTAAAATTACCGAAATACCACTAGTTTGTAAAATTACCGAA
*
84046734 ATA-CCCTAAATTTGTAA
65 ATATCACT-AATTTGTAA
* ** *
84046751 AATTACCAAAATACCCCTATTTTACAAAATTACAGAAATACC
1 AATTACCAAAATACCCCTAATTTGTAAAATTACCGAAATACC
84046793 CTTAACTTTC
Statistics
Matches: 103, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
80 7 0.07
81 92 0.89
82 4 0.04
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.30
Consensus pattern (81 bp):
AATTACCAAAATACCCCTAATTTGTAAAATTACCGAAATACCACTAGTTTGTAAAATTACCGAAA
TATCACTAATTTGTAA
Found at i:84046794 original size:54 final size:54
Alignment explanation
Indices: 84046589--84046794 Score: 236
Period size: 54 Copynumber: 3.8 Consensus size: 54
84046579 TGTAAGATAG
* * * *
84046589 AATTACCAATATACCCCTAGTGTGTAAAATTACCA-AAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCACTAGTTTGTAAAATTA-CAGAAATA-CCCTAAATTTGTAA
* * * *
84046643 AATTACCGAAATATCACTAGTTTGTGAAATTACCGAAATACCCTAAATTTGTAA
1 AATTACCAAAATACCACTAGTTTGTAAAATTACAGAAATACCCTAAATTTGTAA
* * * *
84046697 AATTACCGAAATATCACTAGTTTGTGAAATTACCGAAATACCCTAAATTTGTAA
1 AATTACCAAAATACCACTAGTTTGTAAAATTACAGAAATACCCTAAATTTGTAA
* * **
84046751 AATTACCAAAATACCCCTATTTTACAAAATTACAGAAATACCCT
1 AATTACCAAAATACCACTAGTTTGTAAAATTACAGAAATACCCT
84046795 TAACTTTCTA
Statistics
Matches: 134, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
53 5 0.04
54 129 0.96
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCACTAGTTTGTAAAATTACAGAAATACCCTAAATTTGTAA
Found at i:84047816 original size:25 final size:25
Alignment explanation
Indices: 84047778--84047847 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
84047768 AGGAAATGCT
* *
84047778 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
84047803 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
84047828 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
84047848 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:84047860 original size:24 final size:24
Alignment explanation
Indices: 84047777--84047872 Score: 95
Period size: 25 Copynumber: 3.9 Consensus size: 24
84047767 GAGGAAATGC
*
84047777 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAGTTTA-T
* *
84047802 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
84047826 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
84047850 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
84047873 ATATGATAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
23 5 0.08
24 11 0.18
25 43 0.72
26 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:84047871 original size:50 final size:50
Alignment explanation
Indices: 84047778--84047872 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
84047768 AGGAAATGCT
**
84047778 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
* **
84047828 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
84047873 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:84068889 original size:31 final size:31
Alignment explanation
Indices: 84068847--84068910 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
84068837 CCTTTCCATA
84068847 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
* *
84068878 TTTCATGTTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
84068909 TT
1 TT
84068911 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:84069181 original size:23 final size:24
Alignment explanation
Indices: 84069101--84069214 Score: 128
Period size: 24 Copynumber: 4.8 Consensus size: 24
84069091 TGCTTTATCA
*
84069101 TATAACTGGAGGCCT-AGCCTCTTT-
1 TATAACTGG-GGCATAAGCC-CTTTC
*
84069125 TAATAACTGGGGCCA-CAGCCCTTTC
1 T-ATAACTGGGG-CATAAGCCCTTTC
*
84069150 AATAACTGGGGCATAAGCCCTTT-
1 TATAACTGGGGCATAAGCCCTTTC
84069173 TATAACTGGGGCATAAGCCCTTTC
1 TATAACTGGGGCATAAGCCCTTTC
*
84069197 GATAACTGGGGCATAAGC
1 TATAACTGGGGCATAAGC
84069215 TGTAACATCC
Statistics
Matches: 79, Mismatches: 5, Indels: 12
0.82 0.05 0.12
Matches are distributed among these distances:
23 24 0.30
24 42 0.53
25 13 0.16
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (24 bp):
TATAACTGGGGCATAAGCCCTTTC
Found at i:84069181 original size:47 final size:49
Alignment explanation
Indices: 84069102--84069214 Score: 153
Period size: 47 Copynumber: 2.3 Consensus size: 49
84069092 GCTTTATCAT
* *
84069102 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCA-CAGCCCTTTCA
1 ATAACTGG-GGCATAAGCCTCTTTTAATAACTGGGG-CATAAGCCCTTTCA
*
84069151 ATAACTGGGGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCTCTTTTAATAACTGGGGCATAAGCCCTTTCA
84069198 ATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGC
84069215 TGTAACATCC
Statistics
Matches: 59, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
46 2 0.03
47 36 0.61
48 9 0.15
49 12 0.20
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (49 bp):
ATAACTGGGGCATAAGCCTCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:84071009 original size:71 final size:71
Alignment explanation
Indices: 84070925--84071088 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
84070915 CGATTTGTCT
84070925 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
84070990 CTTTCA
66 CTTTCA
* *
84070996 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
84071061 CTTTCA
66 CTTTCA
84071067 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
84071089 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:84071126 original size:71 final size:70
Alignment explanation
Indices: 84070925--84071122 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
84070915 CGATTTGTCT
* * * * *
84070925 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
84070990 CTTTCA
65 CTTTCA
* * * *
84070996 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
84071061 CTTTCA
65 CTTTCA
* *
84071067 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
84071123 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:84078538 original size:70 final size:71
Alignment explanation
Indices: 84078455--84078617 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
84078445 CGATTTGTCT
84078455 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
84078519 CTTTCA
66 CTTTCA
*
84078525 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
84078590 CTTTCA
66 CTTTCA
84078596 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
84078618 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:84078655 original size:71 final size:70
Alignment explanation
Indices: 84078455--84078651 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
84078445 CGATTTGTCT
* * * *
84078455 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
84078519 CTTTCA
65 CTTTCA
* * * *
84078525 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
84078590 CTTTCA
65 CTTTCA
* *
84078596 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
84078652 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 52 0.44
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:84086500 original size:92 final size:92
Alignment explanation
Indices: 84086343--84086534 Score: 348
Period size: 92 Copynumber: 2.1 Consensus size: 92
84086333 CAATCTAGTG
*
84086343 CTTAAACCCTAAAAATATACCGATTTTAAACCTAATACCAAAGTATAAATCATATATAAGCCCCA
1 CTTAAACCCTAAAAATATACCGATTTTAAACCTAATACCAAAGCATAAATCATATATAAGCCCCA
*
84086408 TTATCCCTTAAAACACTATTAGTTTAA
66 TTAGCCCTTAAAACACTATTAGTTTAA
*
84086435 CTTAAACCCTAAAAATATACTGATTTTAAACCTAATACCAAAGCATAAATCATATATAAGCCCCA
1 CTTAAACCCTAAAAATATACCGATTTTAAACCTAATACCAAAGCATAAATCATATATAAGCCCCA
84086500 TTAGCCCTTAAAACACTATTAGTTTAA
66 TTAGCCCTTAAAACACTATTAGTTTAA
*
84086527 CTAAAACC
1 CTTAAACC
84086535 TCAACCAAAC
Statistics
Matches: 96, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 96 1.00
ACGTcount: A:0.44, C:0.22, G:0.05, T:0.29
Consensus pattern (92 bp):
CTTAAACCCTAAAAATATACCGATTTTAAACCTAATACCAAAGCATAAATCATATATAAGCCCCA
TTAGCCCTTAAAACACTATTAGTTTAA
Found at i:84086612 original size:10 final size:10
Alignment explanation
Indices: 84086590--84086633 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
84086580 AATTTCTGCA
*
84086590 TTTTTCTTT-
1 TTTTTGTTTC
84086599 TTTTTGTTTC
1 TTTTTGTTTC
*
84086609 TTTTTGCTTC
1 TTTTTGTTTC
84086619 TTTCTTGTTTC
1 TTT-TTGTTTC
84086630 TTTT
1 TTTT
84086634 ATAGATTATC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
9 8 0.27
10 13 0.43
11 9 0.30
ACGTcount: A:0.00, C:0.14, G:0.07, T:0.80
Consensus pattern (10 bp):
TTTTTGTTTC
Found at i:84091264 original size:18 final size:18
Alignment explanation
Indices: 84091227--84091271 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
84091217 CAAATACATT
84091227 TAAAAACATAAAAAAAAAA
1 TAAAAA-ATAAAAAAAAAA
* * *
84091246 TTAAAAATAAGAAACAAA
1 TAAAAAATAAAAAAAAAA
84091264 TAAAAAAT
1 TAAAAAAT
84091272 GAGGCTAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 17 0.77
19 5 0.23
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.16
Consensus pattern (18 bp):
TAAAAAATAAAAAAAAAA
Found at i:84092336 original size:13 final size:14
Alignment explanation
Indices: 84092313--84092341 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
84092303 AACTCACATA
84092313 AATAAACTATTTTT
1 AATAAACTATTTTT
84092327 AATAAA-TATTTTT
1 AATAAACTATTTTT
84092340 AA
1 AA
84092342 ATTATGTGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (14 bp):
AATAAACTATTTTT
Found at i:84093559 original size:30 final size:30
Alignment explanation
Indices: 84093523--84093585 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
84093513 CCTTTTCATA
84093523 TTTCATATTTCATAACACTGGGCCGAAGCC
1 TTTCATATTTCATAACACTGGGCCGAAGCC
**
84093553 TTTCATATTTCATATTACTGGGCCGAAGCC
1 TTTCATATTTCATAACACTGGGCCGAAGCC
84093583 TTT
1 TTT
84093586 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (30 bp):
TTTCATATTTCATAACACTGGGCCGAAGCC
Found at i:84093827 original size:24 final size:24
Alignment explanation
Indices: 84093791--84093942 Score: 254
Period size: 24 Copynumber: 6.4 Consensus size: 24
84093781 CTGGAGGCCT
*
84093791 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
84093816 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
84093840 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
84093863 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
84093887 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
84093911 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
84093934 AGCCCTTTT
1 AGCCCTTTT
84093943 TCACTTCCTC
Statistics
Matches: 122, Mismatches: 3, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
23 45 0.37
24 73 0.60
25 4 0.03
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:84093877 original size:71 final size:71
Alignment explanation
Indices: 84093791--84093942 Score: 268
Period size: 71 Copynumber: 2.1 Consensus size: 71
84093781 CTGGAGGCCT
84093791 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTG
1 AGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTG
84093856 GGGCATA
65 GGGCATA
* * *
84093863 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGG
1 AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGG
84093928 GGCATA
66 GGCATA
84093934 AGCCCTTTT
1 AGCCCTTTT
84093943 TCACTTCCTC
Statistics
Matches: 77, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
71 73 0.95
72 4 0.05
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (71 bp):
AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGG
GGCATA
Found at i:84093942 original size:47 final size:48
Alignment explanation
Indices: 84093791--84093942 Score: 254
Period size: 47 Copynumber: 3.2 Consensus size: 48
84093781 CTGGAGGCCT
*
84093791 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
*
84093840 AGCCC-TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
*
84093887 AGCCCTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
84093934 AGCCCTTTT
1 AGCCCTTTT
84093943 TCACTTCCTC
Statistics
Matches: 98, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
47 71 0.72
48 23 0.23
49 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
Found at i:84094016 original size:20 final size:20
Alignment explanation
Indices: 84093991--84094057 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
84093981 TTATGACTAC
84093991 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
84094011 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
84094031 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
84094051 ACCATGT
1 ATCATGT
84094058 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:84094022 original size:11 final size:11
Alignment explanation
Indices: 84093991--84094046 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
84093981 TTATGACTAC
84093991 ATCATGTGCAT
1 ATCATGTGCAT
*
84094002 ATCA--TACAT
1 ATCATGTGCAT
84094011 ATCATGTGCAT
1 ATCATGTGCAT
*
84094022 ATCA--TACAT
1 ATCATGTGCAT
*
84094031 GTCATGTGCAT
1 ATCATGTGCAT
84094042 ATCAT
1 ATCAT
84094047 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:84094126 original size:25 final size:25
Alignment explanation
Indices: 84094094--84094141 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
84094084 ATACATAAAC
* * *
84094094 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
84094119 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
84094142 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:84101928 original size:24 final size:24
Alignment explanation
Indices: 84101892--84102043 Score: 254
Period size: 24 Copynumber: 6.4 Consensus size: 24
84101882 CTGGAGGCCT
*
84101892 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
84101917 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
84101941 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
84101964 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
84101988 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
84102012 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
84102035 AGCCCTTTT
1 AGCCCTTTT
84102044 TCACTTCCTC
Statistics
Matches: 122, Mismatches: 3, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
23 45 0.37
24 73 0.60
25 4 0.03
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:84101978 original size:71 final size:71
Alignment explanation
Indices: 84101892--84102043 Score: 268
Period size: 71 Copynumber: 2.1 Consensus size: 71
84101882 CTGGAGGCCT
84101892 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTG
1 AGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTG
84101957 GGGCATA
65 GGGCATA
* * *
84101964 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGG
1 AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGG
84102029 GGCATA
66 GGCATA
84102035 AGCCCTTTT
1 AGCCCTTTT
84102044 TCACTTCCTC
Statistics
Matches: 77, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
71 73 0.95
72 4 0.05
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (71 bp):
AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGG
GGCATA
Found at i:84102043 original size:47 final size:48
Alignment explanation
Indices: 84101892--84102043 Score: 254
Period size: 47 Copynumber: 3.2 Consensus size: 48
84101882 CTGGAGGCCT
*
84101892 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
*
84101941 AGCCC-TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
*
84101988 AGCCCTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
84102035 AGCCCTTTT
1 AGCCCTTTT
84102044 TCACTTCCTC
Statistics
Matches: 98, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
47 71 0.72
48 23 0.23
49 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
Found at i:84102117 original size:20 final size:20
Alignment explanation
Indices: 84102092--84102158 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
84102082 TTATGATTAC
84102092 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
84102112 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
84102132 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
84102152 ACCATGT
1 ATCATGT
84102159 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:84102123 original size:11 final size:11
Alignment explanation
Indices: 84102092--84102147 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
84102082 TTATGATTAC
84102092 ATCATGTGCAT
1 ATCATGTGCAT
*
84102103 ATCA--TACAT
1 ATCATGTGCAT
84102112 ATCATGTGCAT
1 ATCATGTGCAT
*
84102123 ATCA--TACAT
1 ATCATGTGCAT
*
84102132 GTCATGTGCAT
1 ATCATGTGCAT
84102143 ATCAT
1 ATCAT
84102148 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:84102227 original size:25 final size:25
Alignment explanation
Indices: 84102195--84102242 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
84102185 ATACATAAAC
* * *
84102195 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
84102220 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
84102243 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:84106197 original size:38 final size:35
Alignment explanation
Indices: 84106138--84106238 Score: 129
Period size: 31 Copynumber: 2.9 Consensus size: 35
84106128 TCAATCATGC
*
84106138 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
84106177 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
84106208 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
84106239 ACTGTAAACG
Statistics
Matches: 57, Mismatches: 1, Indels: 12
0.81 0.01 0.17
Matches are distributed among these distances:
31 27 0.47
33 3 0.05
34 1 0.02
36 1 0.02
38 14 0.25
39 11 0.19
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.40
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:84106199 original size:31 final size:31
Alignment explanation
Indices: 84106161--84106242 Score: 155
Period size: 31 Copynumber: 2.6 Consensus size: 31
84106151 CCTTTTCATA
*
84106161 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
84106192 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
84106223 TTTCATATTTCATATTACTG
1 TTTCATATTTCATATTACTG
84106243 TAAACGGTAT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.41
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:84106480 original size:24 final size:24
Alignment explanation
Indices: 84106429--84106619 Score: 296
Period size: 24 Copynumber: 8.0 Consensus size: 24
84106419 GCTTTATCAT
* *
84106429 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
84106454 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
84106478 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
*
84106501 ATAACTGGGGCACAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
84106525 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
84106549 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
84106573 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
84106597 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
84106620 TCACTTCCTC
Statistics
Matches: 157, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
23 22 0.14
24 123 0.78
25 12 0.08
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:84106695 original size:20 final size:20
Alignment explanation
Indices: 84106670--84106729 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
84106660 TATGATTACC
84106670 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
84106690 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
84106710 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
84106730 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Done.