Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 293 of 444
Found at i:84736378 original size:40 final size:40
Alignment explanation
Indices: 84736251--84736380 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
84736241 ATGCTGGAAA
* * *
84736251 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
84736291 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
84736331 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
84736371 TTATATCCGG
1 TTATATCCGG
84736381 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:84736379 original size:80 final size:80
Alignment explanation
Indices: 84736213--84736380 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
84736203 AAATTGAATG
* *
84736213 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
84736278 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
84736293 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
84736356 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
84736373 ATATCCGG
1 ATATCCGG
84736381 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:84747050 original size:31 final size:31
Alignment explanation
Indices: 84747012--84747074 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
84747002 CTTTTCATAA
84747012 TTCATATTTCATAACACTGGGCCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
**
84747043 TTCATATTTCATATTACTGGGCCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
84747074 T
1 T
84747075 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTCATATTTCATAACACTGGGCCGAAGCCTT
Found at i:84747332 original size:24 final size:24
Alignment explanation
Indices: 84747268--84747385 Score: 179
Period size: 23 Copynumber: 5.0 Consensus size: 24
84747258 GCTTTATCAT
*
84747268 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
84747293 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
84747316 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
84747339 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
84747363 ATAATTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
84747386 GCACTTCCTC
Statistics
Matches: 88, Mismatches: 2, Indels: 7
0.91 0.02 0.07
Matches are distributed among these distances:
23 41 0.47
24 39 0.44
25 8 0.09
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:84747372 original size:47 final size:46
Alignment explanation
Indices: 84747289--84747384 Score: 174
Period size: 47 Copynumber: 2.1 Consensus size: 46
84747279 CCTAGCCTCT
84747289 TTTAATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
84747335 TTTAATAACTGGGGCATAAGCCCTTTTAATAATTGGGGCATAAGCCC
1 TTTAATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATAAGCCC
84747382 TTT
1 TTT
84747385 TGCACTTCCT
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
46 16 0.33
47 32 0.67
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (46 bp):
TTTAATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:84747460 original size:20 final size:20
Alignment explanation
Indices: 84747435--84747501 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
84747425 TTATGAATAC
84747435 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
84747455 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
84747475 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
84747495 ACCATGT
1 ATCATGT
84747502 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:84747466 original size:11 final size:11
Alignment explanation
Indices: 84747435--84747490 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
84747425 TTATGAATAC
84747435 ATCATGTGCAT
1 ATCATGTGCAT
*
84747446 ATCA--TACAT
1 ATCATGTGCAT
84747455 ATCATGTGCAT
1 ATCATGTGCAT
*
84747466 ATCA--TACAT
1 ATCATGTGCAT
*
84747475 GTCATGTGCAT
1 ATCATGTGCAT
84747486 ATCAT
1 ATCAT
84747491 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:84747580 original size:25 final size:25
Alignment explanation
Indices: 84747538--84747585 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
84747528 ATATTTAAAC
* * *
84747538 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
84747563 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
84747586 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:84748669 original size:12 final size:12
Alignment explanation
Indices: 84748652--84748677 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
84748642 AGAAGGAGAA
84748652 GGAAGAAAAGAT
1 GGAAGAAAAGAT
84748664 GGAAGAAAAGAT
1 GGAAGAAAAGAT
84748676 GG
1 GG
84748678 TAGATTCGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.00, G:0.38, T:0.08
Consensus pattern (12 bp):
GGAAGAAAAGAT
Found at i:84757176 original size:28 final size:28
Alignment explanation
Indices: 84757115--84757212 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
84757105 TCACAAATTG
** * *
84757115 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
84757144 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
84757172 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
84757200 GCACTAAGTGTGC
1 GCACTAAGTGTGC
84757213 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:84764854 original size:28 final size:28
Alignment explanation
Indices: 84764793--84764890 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
84764783 TCACAAATTG
** * *
84764793 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
84764822 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
84764850 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
84764878 GCACTAAGTGTGC
1 GCACTAAGTGTGC
84764891 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:84771351 original size:10 final size:10
Alignment explanation
Indices: 84771336--84771361 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
84771326 TGAATTTTTA
84771336 TTTTTTAAAT
1 TTTTTTAAAT
84771346 TTTTTTAAAT
1 TTTTTTAAAT
84771356 TTTTTT
1 TTTTTT
84771362 CTTTTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTTTTAAAT
Found at i:84771927 original size:23 final size:21
Alignment explanation
Indices: 84771899--84771940 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
84771889 TATATATATA
84771899 TATATATATAAAAGGCAATTC
1 TATATATATAAAAGGCAATTC
84771920 TATATATATAAAAGGCAATTC
1 TATATATATAAAAGGCAATTC
84771941 AAGATAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.33
Consensus pattern (21 bp):
TATATATATAAAAGGCAATTC
Found at i:84771928 original size:2 final size:2
Alignment explanation
Indices: 84771867--84771908 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
84771857 ATAAAGCCAT
84771867 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
84771909 AAAGGCAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:84778738 original size:39 final size:39
Alignment explanation
Indices: 84778679--84778761 Score: 148
Period size: 39 Copynumber: 2.1 Consensus size: 39
84778669 TGGTTTGAAG
*
84778679 AAGAGTTATAAAGTGACTCTTATTGGAACCCAGTTCTAT
1 AAGATTTATAAAGTGACTCTTATTGGAACCCAGTTCTAT
*
84778718 AAGATTTATAAAGTGACTCTTATTGGAACCTAGTTCTAT
1 AAGATTTATAAAGTGACTCTTATTGGAACCCAGTTCTAT
84778757 AAGAT
1 AAGAT
84778762 GAGAAGTAAC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (39 bp):
AAGATTTATAAAGTGACTCTTATTGGAACCCAGTTCTAT
Found at i:84781429 original size:22 final size:21
Alignment explanation
Indices: 84781404--84781445 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
84781394 TTTATTGTAC
84781404 TTGTTTCTTTTGAATATGAAAT
1 TTGTTTCTTTTGAAT-TGAAAT
* *
84781426 TTGTTTGTTTTGTATTGAAA
1 TTGTTTCTTTTGAATTGAAA
84781446 CAGTGTTATG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.24, C:0.02, G:0.17, T:0.57
Consensus pattern (21 bp):
TTGTTTCTTTTGAATTGAAAT
Found at i:84781796 original size:131 final size:130
Alignment explanation
Indices: 84781649--84781890 Score: 322
Period size: 131 Copynumber: 1.9 Consensus size: 130
84781639 TGAACTTAAG
* * * * * * *
84781649 TTGCGATCTTAAATCAGCAAACTGTTTGGAGTTGCGATCTTAAATCAACGAACTCAAGTGAAATT
1 TTGCGATATTAAATCAGCAAACTATTCGAAGTTGCAATCTTAAATCAACGAACTCAAATAAAATT
* * * *
84781714 GTTCATGATATTGAATCAAATGAAATTAGGTTGCGATCTTAAATTAGCTAACCTTAATGATACCA
66 GTTCATGATATT-AACCAAATGAAATTAGGTTACAATATTAAATTAGCTAACCTTAATGATACCA
84781779 A
130 A
* * *
84781780 TTGCGATATTAAATCAGCGAGCTATTCGAAGTTGCAATCTTAAATCAACTAACTCAAATAAAATT
1 TTGCGATATTAAATCAGCAAACTATTCGAAGTTGCAATCTTAAATCAACGAACTCAAATAAAATT
* * *
84781845 GTTCATGATCTTAACCAAATTAACTTAGGTTACAATATTAAATTAG
66 GTTCATGATATTAACCAAATGAAATTAGGTTACAATATTAAATTAG
84781891 TGAGCTATTC
Statistics
Matches: 94, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
130 28 0.30
131 66 0.70
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (130 bp):
TTGCGATATTAAATCAGCAAACTATTCGAAGTTGCAATCTTAAATCAACGAACTCAAATAAAATT
GTTCATGATATTAACCAAATGAAATTAGGTTACAATATTAAATTAGCTAACCTTAATGATACCAA
Found at i:84781923 original size:94 final size:95
Alignment explanation
Indices: 84781785--84781986 Score: 291
Period size: 94 Copynumber: 2.1 Consensus size: 95
84781775 ACCAATTGCG
* *
84781785 ATATTAAATCAGCGAGCTATTCGAAGTTGCAATCTTAAATCAACTAACTCAAATAAAATTGTTCA
1 ATATTAAATCAGCGAGCTATTCGAAGTTACAATATTAAATCAACTAACTCAAATAAAATTGTTCA
*
84781850 TGATCTT-AACCAAATTAACTTAGGTTACA
66 TGATCTTGAACCAAATGAACTTAGGTTACA
* * *
84781879 ATATTAAATTAGTGAGCTATTC-AGAGTTACGATATTAAATCAACTAACTCAAATAAAATTGTTC
1 ATATTAAATCAGCGAGCTATTCGA-AGTTACAATATTAAATCAACTAACTCAAATAAAATTGTTC
* * *
84781943 ATGATCTTGAATCAAATGAACTTAGGTTGCG
65 ATGATCTTGAACCAAATGAACTTAGGTTACA
*
84781974 ATCTTAAATCAGC
1 ATATTAAATCAGC
84781987 TAACCTTAAT
Statistics
Matches: 94, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
93 1 0.01
94 65 0.69
95 28 0.30
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (95 bp):
ATATTAAATCAGCGAGCTATTCGAAGTTACAATATTAAATCAACTAACTCAAATAAAATTGTTCA
TGATCTTGAACCAAATGAACTTAGGTTACA
Found at i:84781982 original size:225 final size:223
Alignment explanation
Indices: 84781590--84782095 Score: 647
Period size: 225 Copynumber: 2.3 Consensus size: 223
84781580 ATTAGCTATG
* * * * * *
84781590 ATCTTAAATTAGCTAGCTCAAATAAAATTGTTCATGGTCTTAAATCAAATGAACTTAAGTTGCGA
1 ATCTTAAATCAGCTAACTCAAATAAAATTGTTCATGATCTTAAATCAAATGAACTTAGGTTACAA
* * ** * * * *
84781655 TCTTAAATCAGCAAACTGTTTGGAGTTGCGATCTTAAATCAACGAACTCAAGTGAAATTGTTCAT
66 TATTAAATCAGCAAACTATTCAGAGTTACGATATTAAATCAACGAACTCAAATAAAATTGTTCAT
*
84781720 GATATTGAATCAAATGAAATTAGGTTGCGATCTTAAATTAGCTAACCTTAATGATACCAATTGCG
131 GATATTGAATCAAATGAAATTAGGTTGCGATCTTAAATCAGCTAACCTTAATGATACCAATTGCG
*
84781785 ATATTAAATCAGCGAGCTATTCGAAGTTGCA
196 ATATTAAATCAGCGAGCTATTC-AA--AGCA
* * *
84781816 ATCTTAAATCAACTAACTCAAATAAAATTGTTCATGATCTT-AACCAAATTAACTTAGGTTACAA
1 ATCTTAAATCAGCTAACTCAAATAAAATTGTTCATGATCTTAAATCAAATGAACTTAGGTTACAA
* ** * *
84781880 TATTAAATTAGTGAGCTATTCAGAGTTACGATATTAAATCAACTAACTCAAATAAAATTGTTCAT
66 TATTAAATCAGCAAACTATTCAGAGTTACGATATTAAATCAACGAACTCAAATAAAATTGTTCAT
* * * * *
84781945 GATCTTGAATCAAATGAACTTAGGTTGCGATCTTAAATCAGCTAACCTTAATGATATCAGTTGTG
131 GATATTGAATCAAATGAAATTAGGTTGCGATCTTAAATCAGCTAACCTTAATGATACCAATTGCG
* * * * *
84782010 ATATTAAATTAGTGAGTTGTTCAAAGCG
196 ATATTAAATCAGCGAGCTATTCAAAGCA
*
84782038 ATATTAAATCAGCTAACTCAAATAAAAATT-TTCATGATCTTAAATCAAATGAACTTAG
1 ATCTTAAATCAGCTAACTCAAAT-AAAATTGTTCATGATCTTAAATCAAATGAACTTAG
84782096 TTTGTGATCT
Statistics
Matches: 240, Mismatches: 38, Indels: 7
0.84 0.13 0.02
Matches are distributed among these distances:
222 34 0.14
223 20 0.08
224 2 0.01
225 147 0.61
226 37 0.15
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (223 bp):
ATCTTAAATCAGCTAACTCAAATAAAATTGTTCATGATCTTAAATCAAATGAACTTAGGTTACAA
TATTAAATCAGCAAACTATTCAGAGTTACGATATTAAATCAACGAACTCAAATAAAATTGTTCAT
GATATTGAATCAAATGAAATTAGGTTGCGATCTTAAATCAGCTAACCTTAATGATACCAATTGCG
ATATTAAATCAGCGAGCTATTCAAAGCA
Found at i:84782109 original size:64 final size:63
Alignment explanation
Indices: 84781908--84782109 Score: 153
Period size: 64 Copynumber: 3.2 Consensus size: 63
84781898 TTCAGAGTTA
* * * *
84781908 CGATATTAAATCAACTAACTCAAATAAAATTGTTCATGATCTTGAATCAAATGAACTTAGGTTG
1 CGATCTTAAATCAGCTAACTCAAATAAAATT-TTCATGATCTTAAATCAAATGAACTTAGTTTG
* * * * * * * * *
84781972 CGATCTTAAATCAGCTAAC-CTTAATGATATCAGTT-GTGATATTAAAT-TAGTG-AGTT-GTTC
1 CGATCTTAAATCAGCTAACTC-AAATAAAAT--TTTCATGATCTTAAATCAAATGAACTTAGTT-
*
84782032 AAAG
62 --TG
*
84782036 CGATATTAAATCAGCTAACTCAAATAAAAATTTTCATGATCTTAAATCAAATGAACTTAGTTTG
1 CGATCTTAAATCAGCTAACTCAAAT-AAAATTTTCATGATCTTAAATCAAATGAACTTAGTTTG
*
84782100 TGATCTTAAA
1 CGATCTTAAA
84782110 CGAGCTTAAT
Statistics
Matches: 99, Mismatches: 27, Indels: 24
0.66 0.18 0.16
Matches are distributed among these distances:
61 2 0.02
62 3 0.03
63 6 0.06
64 73 0.74
65 9 0.09
66 3 0.03
67 3 0.03
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (63 bp):
CGATCTTAAATCAGCTAACTCAAATAAAATTTTCATGATCTTAAATCAAATGAACTTAGTTTG
Found at i:84782652 original size:16 final size:16
Alignment explanation
Indices: 84782631--84782663 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
84782621 CGCATACAAG
84782631 TGTGGATGCAGTCTCT
1 TGTGGATGCAGTCTCT
84782647 TGTGGATGCAGTCTCT
1 TGTGGATGCAGTCTCT
84782663 T
1 T
84782664 CTAACCAAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.18, G:0.30, T:0.39
Consensus pattern (16 bp):
TGTGGATGCAGTCTCT
Found at i:84793656 original size:19 final size:19
Alignment explanation
Indices: 84793618--84793656 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
84793608 ATATATTAAT
*
84793618 AATATTTTATTAAATAAAA
1 AATATTTTAATAAATAAAA
84793637 AATATCTTTAATAAATAAAA
1 AATAT-TTTAATAAATAAAA
84793657 TTATATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (19 bp):
AATATTTTAATAAATAAAA
Found at i:84793665 original size:19 final size:20
Alignment explanation
Indices: 84793618--84793670 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
84793608 ATATATTAAT
*
84793618 AATAT-TTTATTAAATAAAA
1 AATATATTTAATAAATAAAA
*
84793637 AATATCTTTAATAAAT-AAA
1 AATATATTTAATAAATAAAA
*
84793656 ATTATATTT-ATAAAT
1 AATATATTTAATAAAT
84793671 TTTATTAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
18 6 0.20
19 15 0.50
20 9 0.30
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
AATATATTTAATAAATAAAA
Found at i:84800567 original size:23 final size:23
Alignment explanation
Indices: 84800541--84800586 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
84800531 ATGAAACACC
*
84800541 CATTGCTTTATACAAAAAGACAT
1 CATTGCTTTAGACAAAAAGACAT
*
84800564 CATTGCTTTAGACAAATAGACAT
1 CATTGCTTTAGACAAAAAGACAT
84800587 TAAACTCTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.30
Consensus pattern (23 bp):
CATTGCTTTAGACAAAAAGACAT
Found at i:84809728 original size:44 final size:44
Alignment explanation
Indices: 84809666--84809822 Score: 180
Period size: 43 Copynumber: 3.6 Consensus size: 44
84809656 TGTGATATTG
*
84809666 TGTAAGACCACGTCTGGGACGTTGGCATCGACT-TATGATTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TATATGATTTACA
* *
84809710 TGTAAGACCATGTCTGGGACGTTGGTATCG-TATATGATTT-CA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATATGATTTACA
** * *
84809752 TGTAAGACCTTGTCTGGGACAG-TGGCATCAATATTTGA-TTACA
1 TGTAAGACCACGTCTGGGAC-GTTGGCATCGATATATGATTTACA
* *
84809795 TGGAAGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
84809823 TGTACAACAT
Statistics
Matches: 97, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
42 30 0.31
43 39 0.40
44 28 0.29
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.31
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATATGATTTACA
Found at i:84817366 original size:39 final size:38
Alignment explanation
Indices: 84817306--84817629 Score: 443
Period size: 39 Copynumber: 8.3 Consensus size: 38
84817296 CGGGACTTTA
* *
84817306 AGCCCGAATATAATACCAGCACGAATGCCTTCAGGGCTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTC-GGGCTT
* *
84817345 AGCCCGGATATAACACTAGCACAAATGCCTTCGGGGCTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTC-GGGCTT
* *
84817384 AGCCCGGATACAACACCAGCACGAATGCCTTCGAGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCG-GGCTT
* *
84817423 AGCCCGGATATAACATCAG-ACGAATGCCTTCGAGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCG-GGCTT
84817461 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGG-CTT
* * **
84817500 AGCCCAGATATAACACCAGTACGAATGCCTTCGACACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCG-GGCTT
* *
84817539 AGCCCGGATATAACATCAGCACGAATGCCTTCGGGACGT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGG-CTT
84817578 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGG-CTT
84817617 AGCCCGGATATAA
1 AGCCCGGATATAA
84817630 TTCTCCATTA
Statistics
Matches: 255, Mismatches: 25, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
38 39 0.15
39 216 0.85
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.19
Consensus pattern (38 bp):
AGCCCGGATATAACACCAGCACGAATGCCTTCGGGCTT
Found at i:84824184 original size:53 final size:53
Alignment explanation
Indices: 84824005--84824208 Score: 201
Period size: 53 Copynumber: 3.8 Consensus size: 53
84823995 AGGGTTTAAA
* * * * * *
84824005 GATACCAAGTAAGACTATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGCAAG
* * * * * * * *
84824059 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAG
* * *
84824114 GATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAG
* * *
84824167 GATACCACGTAAGACCATGTCAAGACATGGTAATGGTAAGTT
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
84824209 TAAAAAGGAA
Statistics
Matches: 119, Mismatches: 29, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 45 0.38
54 34 0.29
55 40 0.34
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.21
Consensus pattern (53 bp):
GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAG
Found at i:84825550 original size:42 final size:43
Alignment explanation
Indices: 84825496--84825594 Score: 105
Period size: 43 Copynumber: 2.3 Consensus size: 43
84825486 AGGTGTTACA
* * *
84825496 TGGGATGTTGGCATCG-CATCTGATTTCGTGTAAGACC-CTGTC
1 TGGGACGTTGGCATCGACATCTGATTACATGTAAGACCAC-GTC
* * *
84825538 TGGGACAG-TGGCATTGATATTTGATTACATGTAAGACCACGTC
1 TGGGAC-GTTGGCATCGACATCTGATTACATGTAAGACCACGTC
84825581 TGGGACGTTGGCAT
1 TGGGACGTTGGCAT
84825595 TGTACGATCT
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
42 13 0.28
43 33 0.70
44 1 0.02
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.31
Consensus pattern (43 bp):
TGGGACGTTGGCATCGACATCTGATTACATGTAAGACCACGTC
Found at i:84842978 original size:43 final size:43
Alignment explanation
Indices: 84842917--84843003 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
84842907 GAAAGTTTCG
*
84842917 AGAAATTGAAACAAATGTTGACTGAAGCGTCAATTTTAACCTT
1 AGAAATTGAAACAAATGTTGACTGAAGCGTCAATTTGAACCTT
84842960 AGAAATTGAAACAAATGTTGACTGAAGCGTCAATTTGAACCTT
1 AGAAATTGAAACAAATGTTGACTGAAGCGTCAATTTGAACCTT
84843003 A
1 A
84843004 CTTGAATCGG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (43 bp):
AGAAATTGAAACAAATGTTGACTGAAGCGTCAATTTGAACCTT
Found at i:84854535 original size:122 final size:122
Alignment explanation
Indices: 84854316--84854535 Score: 334
Period size: 122 Copynumber: 1.8 Consensus size: 122
84854306 CGTGCTCCTA
* * *
84854316 TTTGTACTTTGGTACCCTTGAATTGCATATAAGTGCCCCTGTTTGTACTTCAGTACCCCTGAATT
1 TTTGTACTTTGGTACCCATGAATTGCACATAACTGCCCCTGTTTGTACTTCAGTACCCCTGAATT
* *
84854381 GCACATACGTGCCCTTGTTTGTACTTCGGTACCTCTAAATTGCATAGCATGTCCCTG
66 GCACATACATGCCCTTGTTTGTACTTCAGTACCTCTAAATTGCATAGCATGTCCCTG
** * *
84854438 TTTGTACTTTGGTACCCATGAATTGCACATGCCTGCCCCTGTTTGTACTTCGGTACCTCTGAATT
1 TTTGTACTTTGGTACCCATGAATTGCACATAACTGCCCCTGTTTGTACTTCAGTACCCCTGAATT
*
84854503 GCACTTACATG-CCTCTGTTTGTACTTCAGTACC
66 GCACATACATGCCCT-TGTTTGTACTTCAGTACC
84854536 CTTGAATCGC
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
121 3 0.03
122 84 0.97
ACGTcount: A:0.19, C:0.26, G:0.18, T:0.37
Consensus pattern (122 bp):
TTTGTACTTTGGTACCCATGAATTGCACATAACTGCCCCTGTTTGTACTTCAGTACCCCTGAATT
GCACATACATGCCCTTGTTTGTACTTCAGTACCTCTAAATTGCATAGCATGTCCCTG
Found at i:84854553 original size:41 final size:40
Alignment explanation
Indices: 84854293--84854542 Score: 249
Period size: 41 Copynumber: 6.1 Consensus size: 40
84854283 AATTATTCTA
* * *
84854293 TGAATTGCACATACGTGCTCCTATTTGTACTTTGGTACCCT
1 TGAATTGCACATACATGC-CCTGTTTGTACTTCGGTACCCT
* * *
84854334 TGAATTGCATATA-AGTGCCCCTGTTTGTACTTCAGTACCCC
1 TGAATTGCACATACA-TG-CCCTGTTTGTACTTCGGTACCCT
*
84854375 TGAATTGCACATACGTGCCCTTGTTTGTACTTCGGTA-CCT
1 TGAATTGCACATACATGCCC-TGTTTGTACTTCGGTACCCT
* * *
84854415 CTAAATTG--CATAGCATGTCCCTGTTTGTACTTTGGTACCCA
1 -TGAATTGCACATA-CATG-CCCTGTTTGTACTTCGGTACCCT
* *
84854456 TGAATTGCACATGCCTGCCCCTGTTTGTACTTCGGTA-CCT
1 TGAATTGCACATACATG-CCCTGTTTGTACTTCGGTACCCT
* *
84854496 CTGAATTGCACTTACATGCCTCTGTTTGTACTTCAGTACCCT
1 -TGAATTGCACATACATGCC-CTGTTTGTACTTCGGTACCCT
84854538 TGAAT
1 TGAAT
84854543 CGCTCTTACA
Statistics
Matches: 172, Mismatches: 24, Indels: 26
0.77 0.11 0.12
Matches are distributed among these distances:
39 4 0.02
40 33 0.19
41 128 0.74
42 7 0.04
ACGTcount: A:0.20, C:0.26, G:0.18, T:0.37
Consensus pattern (40 bp):
TGAATTGCACATACATGCCCTGTTTGTACTTCGGTACCCT
Found at i:84866794 original size:46 final size:45
Alignment explanation
Indices: 84866727--84866895 Score: 189
Period size: 46 Copynumber: 3.7 Consensus size: 45
84866717 TGTAACCCGC
84866727 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTGGGC-TTCGCAT
* * * *
84866773 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTGG--GCTTCGCAT
* *** * *
84866819 ACATCTCTCGAACTCGGACTCAACTCAACGAG-TTCGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTTGGGC-TTCGCAT
84866865 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
84866896 TTCGGATGCT
Statistics
Matches: 100, Mismatches: 18, Indels: 11
0.78 0.14 0.09
Matches are distributed among these distances:
44 1 0.01
45 25 0.25
46 47 0.47
47 25 0.25
48 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTTGGGCTTCGCAT
Found at i:84866893 original size:92 final size:93
Alignment explanation
Indices: 84866735--84866904 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 93
84866725 GCCCATAAGT
* * *
84866735 GAACTCGGACTCAACTCAACGAGCTTGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
84866800 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
84866828 GAACTCGGACTCAACTCAACGAG-TTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
84866892 CGAGTTCGGATGC
66 CGAGCTCGGATGC
84866905 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 50 0.68
93 23 0.32
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:84874401 original size:19 final size:19
Alignment explanation
Indices: 84874363--84874406 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
84874353 TTAATTAACA
*
84874363 TTTAATTAATTATAATTAG
1 TTTAATTAATTATAAGTAG
84874382 TTTAATTAAATT-TAAGTAG
1 TTTAATT-AATTATAAGTAG
84874401 -TTAATT
1 TTTAATT
84874407 TTTAATCTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 6 0.26
19 13 0.57
20 4 0.17
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (19 bp):
TTTAATTAATTATAAGTAG
Found at i:84877629 original size:16 final size:17
Alignment explanation
Indices: 84877598--84877632 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
84877588 CATTTTTATT
84877598 ATTATTTTACTAATTTTA
1 ATTATTTTA-TAATTTTA
84877616 ATTATTTT-TAATTTTA
1 ATTATTTTATAATTTTA
84877632 A
1 A
84877633 CCTTTCGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
18 8 0.47
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (17 bp):
ATTATTTTATAATTTTA
Found at i:84878224 original size:7 final size:6
Alignment explanation
Indices: 84878201--84878235 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
84878191 TTGTATTGAG
*
84878201 ATTTTA ATTTTA ATTTTAA ATTTTA ATTATA ATTT
1 ATTTTA ATTTTA ATTTT-A ATTTTA ATTTTA ATTT
84878236 AATGCATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (6 bp):
ATTTTA
Found at i:84878224 original size:13 final size:12
Alignment explanation
Indices: 84878201--84878235 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
84878191 TTGTATTGAG
84878201 ATTTTAATTTTA
1 ATTTTAATTTTA
84878213 ATTTTAAATTTTA
1 ATTTT-AATTTTA
*
84878226 ATTATAATTT
1 ATTTTAATTT
84878236 AATGCATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
ATTTTAATTTTA
Found at i:84878249 original size:3 final size:3
Alignment explanation
Indices: 84878241--84878274 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
84878231 AATTTAATGC
84878241 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
84878275 ATGACTTGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:84886560 original size:11 final size:11
Alignment explanation
Indices: 84886544--84886568 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
84886534 TATGCATTAG
84886544 AACTTAGAATT
1 AACTTAGAATT
84886555 AACTTAGAATT
1 AACTTAGAATT
84886566 AAC
1 AAC
84886569 AAATATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.12, G:0.08, T:0.32
Consensus pattern (11 bp):
AACTTAGAATT
Found at i:84886583 original size:8 final size:8
Alignment explanation
Indices: 84886570--84886604 Score: 63
Period size: 8 Copynumber: 4.5 Consensus size: 8
84886560 AGAATTAACA
84886570 AATATTTT
1 AATATTTT
84886578 AATA-TTT
1 AATATTTT
84886585 AATATTTT
1 AATATTTT
84886593 AATATTTT
1 AATATTTT
84886601 AATA
1 AATA
84886605 CTTATTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 7 0.27
8 19 0.73
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (8 bp):
AATATTTT
Found at i:84886590 original size:15 final size:16
Alignment explanation
Indices: 84886570--84886604 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
84886560 AGAATTAACA
84886570 AATATTTTAATA-TTT
1 AATATTTTAATATTTT
84886585 AATATTTTAATATTTT
1 AATATTTTAATATTTT
84886601 AATA
1 AATA
84886605 CTTATTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.63
16 7 0.37
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
AATATTTTAATATTTT
Found at i:84886596 original size:23 final size:23
Alignment explanation
Indices: 84886570--84886614 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
84886560 AGAATTAACA
*
84886570 AATATTTTAATATTTAATATTTT
1 AATATTTTAATACTTAATATTTT
*
84886593 AATATTTTAATACTTATTATTT
1 AATATTTTAATACTTAATATTT
84886615 GTTATTAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (23 bp):
AATATTTTAATACTTAATATTTT
Found at i:84898691 original size:17 final size:17
Alignment explanation
Indices: 84898671--84898721 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 17
84898661 TGGAAACATG
*
84898671 ATCTTCGAAGATATGTA
1 ATCTTAGAAGATATGTA
84898688 ATCTTAGATATGATATGTA
1 ATCTTAGA-A-GATATGTA
*
84898707 ATCTTAGAATATATG
1 ATCTTAGAAGATATG
84898722 ATTTTGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 12 0.40
18 2 0.07
19 16 0.53
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (17 bp):
ATCTTAGAAGATATGTA
Found at i:84898732 original size:23 final size:20
Alignment explanation
Indices: 84898680--84898737 Score: 73
Period size: 19 Copynumber: 2.8 Consensus size: 20
84898670 GATCTTCGAA
84898680 GATATGTAATCTTAG-ATAT
1 GATATGTAATCTTAGAATAT
84898699 GATATGTAATCTTAGAATATAT
1 GATATGTAATCTTAG-A-ATAT
*
84898721 GATTTTGTAATCTTAGA
1 GA-TATGTAATCTTAGA
84898738 GATTTGATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
19 15 0.44
22 7 0.21
23 12 0.35
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.43
Consensus pattern (20 bp):
GATATGTAATCTTAGAATAT
Found at i:84903857 original size:22 final size:21
Alignment explanation
Indices: 84903829--84903886 Score: 71
Period size: 22 Copynumber: 2.7 Consensus size: 21
84903819 ATGCAATCTT
*
84903829 AGATATGATATGTAATCTTAGA
1 AGATATGATTTGTAATCTTA-A
*
84903851 AGATATGATTTTTTAATCTTAA
1 AGATATGA-TTTGTAATCTTAA
*
84903873 AGATTTGATTTGTA
1 AGATATGATTTGTA
84903887 GATACCCTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 5 0.16
22 16 0.52
23 10 0.32
ACGTcount: A:0.36, C:0.03, G:0.16, T:0.45
Consensus pattern (21 bp):
AGATATGATTTGTAATCTTAA
Found at i:84907826 original size:25 final size:25
Alignment explanation
Indices: 84907793--84907841 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
84907783 TTCAAGTTAG
*
84907793 CCATGTCAGGAAGCTCAAAAAGAGC
1 CCATATCAGGAAGCTCAAAAAGAGC
* *
84907818 CCATATCAGGATGCTCATAAAGAG
1 CCATATCAGGAAGCTCAAAAAGAG
84907842 TTGCATTTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.16
Consensus pattern (25 bp):
CCATATCAGGAAGCTCAAAAAGAGC
Found at i:84908341 original size:21 final size:20
Alignment explanation
Indices: 84908309--84908347 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
84908299 ATATAAATGA
84908309 ATTTAACATCAATTTAATCC
1 ATTTAACATCAATTTAATCC
*
84908329 ATTTCACACTCAATTTAAT
1 ATTTAACA-TCAATTTAAT
84908348 TCAATTCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (20 bp):
ATTTAACATCAATTTAATCC
Found at i:84909439 original size:17 final size:18
Alignment explanation
Indices: 84909417--84909450 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
84909407 CACATTGAAG
84909417 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
84909434 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
84909451 CTTCTTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:84910746 original size:28 final size:28
Alignment explanation
Indices: 84910704--84910834 Score: 190
Period size: 28 Copynumber: 4.7 Consensus size: 28
84910694 TGGCCCTTTT
*
84910704 AGGCCCAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
*
84910732 GGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
84910760 GGGCCCAATCACATTCATATGGCCCATT
1 AGGCCCAATCACATTCATATGGCCCATC
* * * *
84910788 AGGTCTAATCACTTTCATATGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
84910816 AGGCCCAATCACATTCATA
1 AGGCCCAATCACATTCATA
84910835 GTCATGCAAT
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 91 1.00
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.25
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:84918526 original size:28 final size:28
Alignment explanation
Indices: 84918484--84918586 Score: 152
Period size: 28 Copynumber: 3.7 Consensus size: 28
84918474 TGGCCCCTTT
* *
84918484 AGGCCCAATCTCATTCATATGGCCCATT
1 AGGCCCAATCACATTCATATGGCCCATC
*
84918512 GGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
84918540 AGGCCCAATCACTTTCATATGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
*
84918568 AAGCCCAATCACATTCATA
1 AGGCCCAATCACATTCATA
84918587 GTCATGCAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 67 1.00
ACGTcount: A:0.27, C:0.34, G:0.15, T:0.24
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:84919710 original size:14 final size:14
Alignment explanation
Indices: 84919691--84919724 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
84919681 AAAGTAAGCC
*
84919691 ATTTTCCAAAAATT
1 ATTTTCCAAAAACT
*
84919705 ATTTTCCGAAAACT
1 ATTTTCCAAAAACT
84919719 ATTTTC
1 ATTTTC
84919725 AGTCAAACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.35, C:0.18, G:0.03, T:0.44
Consensus pattern (14 bp):
ATTTTCCAAAAACT
Found at i:84920978 original size:13 final size:13
Alignment explanation
Indices: 84920960--84920989 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
84920950 AATTTAAGTC
84920960 TATTTGTTAGTTA
1 TATTTGTTAGTTA
84920973 TATTTGTTAGTTA
1 TATTTGTTAGTTA
84920986 TATT
1 TATT
84920990 GATATTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.13, T:0.63
Consensus pattern (13 bp):
TATTTGTTAGTTA
Found at i:84921733 original size:30 final size:30
Alignment explanation
Indices: 84921697--84921756 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
84921687 TATTTTATTA
*
84921697 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
* *
84921727 TTAATTTTATTATTATTTTAGAGGTATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
84921757 CTTGTTAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.02, G:0.13, T:0.58
Consensus pattern (30 bp):
TTAATTTTATTATTATTTTAAAGGCATTTG
Found at i:84922967 original size:59 final size:59
Alignment explanation
Indices: 84922896--84923010 Score: 162
Period size: 59 Copynumber: 1.9 Consensus size: 59
84922886 TGATAATAAA
* * * *
84922896 TATTATATATTGA-GAAACTCTGTGTAAAAAGG-AATTTTCAATTATATTTGGGAAAATAT
1 TATTATACATTGAGGAAA-ACTGTGT-AAAAGGAAATTCTCAATTATATTTGGCAAAATAT
84922955 TATTATACATTGAGGAAAACTGTGTAAAAGGAAATTCTCAATTATATTTGGCAAAA
1 TATTATACATTGAGGAAAACTGTGTAAAAGGAAATTCTCAATTATATTTGGCAAAA
84923011 AAACTATAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
58 6 0.12
59 40 0.80
60 4 0.08
ACGTcount: A:0.42, C:0.07, G:0.16, T:0.36
Consensus pattern (59 bp):
TATTATACATTGAGGAAAACTGTGTAAAAGGAAATTCTCAATTATATTTGGCAAAATAT
Found at i:84927133 original size:17 final size:17
Alignment explanation
Indices: 84927111--84927162 Score: 59
Period size: 17 Copynumber: 3.0 Consensus size: 17
84927101 TTCATAACTT
84927111 TTTTCTGATTTTTTTTA
1 TTTTCTGATTTTTTTTA
* *
84927128 TTTTCTCATTTTTTCTA
1 TTTTCTGATTTTTTTTA
* *
84927145 TTTTTTGAATTTATTTTA
1 TTTTCTG-ATTTTTTTTA
84927163 AAAAATAGAA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
17 20 0.71
18 8 0.29
ACGTcount: A:0.15, C:0.08, G:0.04, T:0.73
Consensus pattern (17 bp):
TTTTCTGATTTTTTTTA
Found at i:84927150 original size:9 final size:9
Alignment explanation
Indices: 84927109--84927150 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
84927099 CTTTCATAAC
84927109 TTTTTTCTGA
1 TTTTTTCT-A
*
84927119 TTTTTTTTA
1 TTTTTTCTA
*
84927128 TTTTCTC-A
1 TTTTTTCTA
84927136 TTTTTTCTA
1 TTTTTTCTA
84927145 TTTTTT
1 TTTTTT
84927151 GAATTTATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
8 7 0.26
9 13 0.48
10 7 0.26
ACGTcount: A:0.10, C:0.10, G:0.02, T:0.79
Consensus pattern (9 bp):
TTTTTTCTA
Found at i:84929255 original size:24 final size:25
Alignment explanation
Indices: 84929228--84929276 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
84929218 CTTTTTTTAT
*
84929228 TAAATAAAAAAC-TTTAAAATATAA
1 TAAATAAAAAACATTTAAAACATAA
* *
84929252 TAAATCAAATACATTTAAAACATAA
1 TAAATAAAAAACATTTAAAACATAA
84929277 AAACAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (25 bp):
TAAATAAAAAACATTTAAAACATAA
Found at i:84929269 original size:25 final size:23
Alignment explanation
Indices: 84929240--84929304 Score: 66
Period size: 25 Copynumber: 2.9 Consensus size: 23
84929230 AATAAAAAAC
*
84929240 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAA-CAAATACA
84929265 TTTAAAACATAAAAACAAAT--A
1 TTTAAAACATAAAAACAAATACA
*
84929286 -TTAAAACA-AAAAATAAATA
1 TTTAAAACATAAAAACAAATA
84929305 AATAATGGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 9 0.24
20 8 0.22
21 1 0.03
23 5 0.14
24 3 0.08
25 11 0.30
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (23 bp):
TTTAAAACATAAAAACAAATACA
Found at i:84929303 original size:19 final size:20
Alignment explanation
Indices: 84929266--84929304 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
84929256 TCAAATACAT
84929266 TTAAAACATAAAAACAAATA
1 TTAAAACATAAAAACAAATA
*
84929286 TTAAAACA-AAAAATAAATA
1 TTAAAACATAAAAACAAATA
84929305 AATAATGGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.21
Consensus pattern (20 bp):
TTAAAACATAAAAACAAATA
Found at i:84933751 original size:105 final size:105
Alignment explanation
Indices: 84933613--84933871 Score: 353
Period size: 105 Copynumber: 2.5 Consensus size: 105
84933603 ATTAATGCAC
* * * * *
84933613 TATAGGTAACAACATTAGGCTCAATG-TTATGCTTTATTATTGCGTCAACAAT-ATCTTCAGCTT
1 TATACGTAACAACATCAGGCTCAATGCCT-TGCTTTATTATTGTGTCAAC-ATCATCTTCAGCGT
* * *
84933676 CAGAAACCATTCCTTCCCTGCAATGCGCATCAACCAATATAT
64 CAGAAACCATTCCTTCCCTACAATGCACATCAACCAATATAA
* * * * *
84933718 TATATGTAACAACATCGGGCTCAATGCCTTGCTTTATCATTGTGCCAACATCATCTTTAGCGTCA
1 TATACGTAACAACATCAGGCTCAATGCCTTGCTTTATTATTGTGTCAACATCATCTTCAGCGTCA
84933783 GAAACCATTCCTTCCCTACAATGCACATCAACCAATATAA
66 GAAACCATTCCTTCCCTACAATGCACATCAACCAATATAA
84933823 TATACGTAACAACATCAGGCTCAATGCCTTGCTTT-TTCATTGTGTCAAC
1 TATACGTAACAACATCAGGCTCAATGCCTTGCTTTATT-ATTGTGTCAAC
84933872 GGTATCTATT
Statistics
Matches: 135, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
104 3 0.02
105 131 0.97
106 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (105 bp):
TATACGTAACAACATCAGGCTCAATGCCTTGCTTTATTATTGTGTCAACATCATCTTCAGCGTCA
GAAACCATTCCTTCCCTACAATGCACATCAACCAATATAA
Found at i:84934549 original size:3 final size:3
Alignment explanation
Indices: 84934541--84934568 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
84934531 CAATGGTATT
84934541 AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA A
84934569 ATAAAAGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:84938224 original size:39 final size:38
Alignment explanation
Indices: 84938170--84938266 Score: 124
Period size: 38 Copynumber: 2.6 Consensus size: 38
84938160 ATGGGTAAAA
* **
84938170 AATCTCATTTCTAAATTTATTTGTTGACATTTTATTTAT
1 AATCTCGTTTCTAAATTTATTT-TAAACATTTTATTTAT
* *
84938209 AATCTCGTTTCTAAATTTATTTTAAATATTTTATTTTT
1 AATCTCGTTTCTAAATTTATTTTAAACATTTTATTTAT
*
84938247 AAACTCGTTTCT-AATTTATT
1 AATCTCGTTTCTAAATTTATT
84938267 AAATATTTTG
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
37 8 0.15
38 23 0.44
39 21 0.40
ACGTcount: A:0.29, C:0.10, G:0.04, T:0.57
Consensus pattern (38 bp):
AATCTCGTTTCTAAATTTATTTTAAACATTTTATTTAT
Found at i:84939546 original size:13 final size:14
Alignment explanation
Indices: 84939528--84939558 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
84939518 AATTTTCAAG
84939528 TACAAAAAA-AAGT
1 TACAAAAAATAAGT
84939541 TACAAAAAATAAGT
1 TACAAAAAATAAGT
84939555 TACA
1 TACA
84939559 TAGACATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.65, C:0.10, G:0.06, T:0.19
Consensus pattern (14 bp):
TACAAAAAATAAGT
Found at i:84940462 original size:243 final size:243
Alignment explanation
Indices: 84939992--84940481 Score: 829
Period size: 243 Copynumber: 2.0 Consensus size: 243
84939982 TATGTGGCGA
* *
84939992 GACTACCATAAACTGACTACCAAATATATTGGCTTCCCGTTCTCCATGTACCAACGTTGGTACTC
1 GACTACCATAAACTAACTACCAAATATATTGGCTTCCCATTCTCCATGTACCAACGTTGGTACTC
* * * *
84940057 GACTGAAGGCATGAAGTTAAACATAAGCACTGCGTCCAAGGCTGCCTTTCAAGTCGGGCGTTCCA
66 AACCGAAGGCATGAAGTTAAACATAAGCACTGCATCCAAGGCTGCCTCTCAAGTCGGGCGTTCCA
*
84940122 CAATGCAATATATTGTTGATGTTCGACTGCCCAATTCTTGTTGTCTTTACCCCTTTTGTTCATAC
131 CAATGCAATATATTGTCGATGTT--ACTGCCCAATTCTTGTTGTCTTTACCCCTTTTGTTCATAC
84940187 CGTGGACATTGTCAAACCTTTTTGGATCGTCCATCTAATATCCCTAAACC
194 CGTGGACATTGTCAAACCTTTTTGGATCGTCCATCTAATATCCCTAAACC
* *
84940237 GACTATCATAAACTAACTACCAAGTATATTGGCTTCCCATTCTCCATGTACCAACGTTGGTACTC
1 GACTACCATAAACTAACTACCAAATATATTGGCTTCCCATTCTCCATGTACCAACGTTGGTACTC
* *
84940302 AACCGAAGGTATGAAGTTAAACATACAGCACTGCATCCGAGGCTGCCTCTCAAGTCGGGCGTTCC
66 AACCGAAGGCATGAAGTTAAACATA-AGCACTGCATCCAAGGCTGCCTCTCAAGTCGGGCGTTCC
*
84940367 ACAATGCAATATATTGTCGATGTT-CTGCCCAATTCTTGTTGTCTTTACCCCTTTTGTTCATGCC
130 ACAATGCAATATATTGTCGATGTTACTGCCCAATTCTTGTTGTCTTTACCCCTTTTGTTCATACC
*
84940431 GTGGACATTGTCAAACCTTTTTGGATCGTCCATGTAATATCCCTAAACC
195 GTGGACATTGTCAAACCTTTTTGGATCGTCCATCTAATATCCCTAAACC
84940480 GA
1 GA
84940482 ATCTAGTAGT
Statistics
Matches: 231, Mismatches: 13, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
243 89 0.39
245 83 0.36
246 59 0.26
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (243 bp):
GACTACCATAAACTAACTACCAAATATATTGGCTTCCCATTCTCCATGTACCAACGTTGGTACTC
AACCGAAGGCATGAAGTTAAACATAAGCACTGCATCCAAGGCTGCCTCTCAAGTCGGGCGTTCCA
CAATGCAATATATTGTCGATGTTACTGCCCAATTCTTGTTGTCTTTACCCCTTTTGTTCATACCG
TGGACATTGTCAAACCTTTTTGGATCGTCCATCTAATATCCCTAAACC
Found at i:84955670 original size:23 final size:24
Alignment explanation
Indices: 84955638--84955690 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
84955628 TGTATATTAA
*
84955638 TTATATATTTA-AAAAATTTTCTT
1 TTATAAATTTAGAAAAATTTTCTT
*
84955661 TTATAAATTTATGTAAAATTTTCTT
1 TTATAAATTTA-GAAAAATTTTCTT
84955686 TTATA
1 TTATA
84955691 TTATCTCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 10 0.38
25 16 0.62
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.57
Consensus pattern (24 bp):
TTATAAATTTAGAAAAATTTTCTT
Found at i:84956014 original size:32 final size:32
Alignment explanation
Indices: 84955978--84956040 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
84955968 AACTTTAAAA
84955978 TTATTATGTTTTAAAT-TTATTGGATATTGAAT
1 TTATTATGTTTT-AATCTTATTGGATATTGAAT
*
84956010 TTATTATGTTTTAATCTTGTTGGATATTGAA
1 TTATTATGTTTTAATCTTATTGGATATTGAA
84956041 ATGATTGAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 3 0.10
32 26 0.90
ACGTcount: A:0.29, C:0.02, G:0.14, T:0.56
Consensus pattern (32 bp):
TTATTATGTTTTAATCTTATTGGATATTGAAT
Found at i:84957743 original size:20 final size:20
Alignment explanation
Indices: 84957718--84957762 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
84957708 ATAATTATCT
*
84957718 AAATTAATTATTAT-CGTTAA
1 AAATTAATTATT-TCCATTAA
84957738 AAATTAATTATTTCCATTAA
1 AAATTAATTATTTCCATTAA
84957758 AAATT
1 AAATT
84957763 CTATTAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 1 0.04
20 22 0.96
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.44
Consensus pattern (20 bp):
AAATTAATTATTTCCATTAA
Found at i:84962243 original size:38 final size:40
Alignment explanation
Indices: 84962201--84962277 Score: 95
Period size: 40 Copynumber: 2.0 Consensus size: 40
84962191 CCATCTCCGT
* *
84962201 CCAACCCAACACACC-A-TGTGGGGATAAAATCGACCCAC
1 CCAACCCAACACACCAAGTATGAGGATAAAATCGACCCAC
** *
84962239 CCAACCTTACATACCAAGTATGAGGATAAAATCGACCCA
1 CCAACCCAACACACCAAGTATGAGGATAAAATCGACCCA
84962278 TCCAGCCTAC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
38 12 0.38
39 1 0.03
40 19 0.59
ACGTcount: A:0.39, C:0.32, G:0.14, T:0.14
Consensus pattern (40 bp):
CCAACCCAACACACCAAGTATGAGGATAAAATCGACCCAC
Found at i:84963955 original size:12 final size:12
Alignment explanation
Indices: 84963940--84963964 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
84963930 AGGCGATTTG
84963940 GAACCTCATTAA
1 GAACCTCATTAA
84963952 GAACCTCATTAA
1 GAACCTCATTAA
84963964 G
1 G
84963965 CCAATCACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.24, G:0.12, T:0.24
Consensus pattern (12 bp):
GAACCTCATTAA
Found at i:84968608 original size:24 final size:24
Alignment explanation
Indices: 84968581--84968628 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
84968571 AAATTCATAG
*
84968581 GTTAAATAAATTATACTAATAAAT
1 GTTAAATAAATTATAATAATAAAT
*
84968605 GTTAAATATATTATAATAATAAAT
1 GTTAAATAAATTATAATAATAAAT
84968629 ACTAAATCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (24 bp):
GTTAAATAAATTATAATAATAAAT
Found at i:84968634 original size:24 final size:24
Alignment explanation
Indices: 84968583--84968635 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
84968573 ATTCATAGGT
* **
84968583 TAAATAAATTATACTAATAAATGT
1 TAAATAAATTATAATAATAAATAC
*
84968607 TAAATATATTATAATAATAAATAC
1 TAAATAAATTATAATAATAAATAC
84968631 TAAAT
1 TAAAT
84968636 CTTTTAGAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.38
Consensus pattern (24 bp):
TAAATAAATTATAATAATAAATAC
Found at i:84970285 original size:20 final size:21
Alignment explanation
Indices: 84970262--84970300 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
84970252 TTAATACAAA
84970262 TTTTAAAT-ATTTTTTATATG
1 TTTTAAATAATTTTTTATATG
84970282 TTTTAAATAATTTTTTATA
1 TTTTAAATAATTTTTTATA
84970301 AACATAAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (21 bp):
TTTTAAATAATTTTTTATATG
Found at i:84970617 original size:23 final size:23
Alignment explanation
Indices: 84970591--84970634 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
84970581 TAAAATTTGA
* *
84970591 TTTATTTTAATCACTCTAATTCT
1 TTTAATTTAATCAATCTAATTCT
*
84970614 TTTAATTTAATTAATCTAATT
1 TTTAATTTAATCAATCTAATT
84970635 ATGATAATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.57
Consensus pattern (23 bp):
TTTAATTTAATCAATCTAATTCT
Found at i:84970757 original size:29 final size:29
Alignment explanation
Indices: 84970723--84970779 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
84970713 AACATTCTTT
84970723 TCTATAATTAACTCAAAACACTTTATTTC
1 TCTATAATTAACTCAAAACACTTTATTTC
84970752 TCTATAATTAACTCAAAACACTTTATTT
1 TCTATAATTAACTCAAAACACTTTATTT
84970780 TCTTTTCTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (29 bp):
TCTATAATTAACTCAAAACACTTTATTTC
Found at i:84974303 original size:105 final size:105
Alignment explanation
Indices: 84974182--84974392 Score: 280
Period size: 105 Copynumber: 2.0 Consensus size: 105
84974172 ACCATAGGTA
* * *
84974182 ACAACATTAGGCTCAATG-CTATGCTTTATCATTGTGTCTACAATATCTTCAGCTTTAGAAACCT
1 ACAACATTAGGCTCAATGTCT-TGCTTTATCATTGTGTCAACAATATCTACAGCTTCAGAAACCT
* *
84974246 TCCCTTCCTTGCAATGCACATCAACCAATATATTATATGTG
65 TCCCATCCTTGCAATGCACATCAACCAATATATTATACGTG
* * ** *
84974287 ACAACATTAGGCTCAATGTCTTGCTTTTTCATTGTGTCAACGATATCTAGTGCTTCAGAAATCTT
1 ACAACATTAGGCTCAATGTCTTGCTTTATCATTGTGTCAACAATATCTACAGCTTCAGAAACCTT
* ** *
84974352 TCCATCCTTGCAATGTGCATCAATCAATATATTATACGTG
66 CCCATCCTTGCAATGCACATCAACCAATATATTATACGTG
84974392 A
1 A
84974393 AAATATTAAG
Statistics
Matches: 91, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
105 89 0.98
106 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.36
Consensus pattern (105 bp):
ACAACATTAGGCTCAATGTCTTGCTTTATCATTGTGTCAACAATATCTACAGCTTCAGAAACCTT
CCCATCCTTGCAATGCACATCAACCAATATATTATACGTG
Found at i:84991868 original size:24 final size:23
Alignment explanation
Indices: 84991841--84991941 Score: 75
Period size: 24 Copynumber: 4.3 Consensus size: 23
84991831 ATTAAAGCAG
84991841 AATAAAAAATAATAATAATAATAA
1 AATAAAAAATAA-AATAATAATAA
*
84991865 AATAAATGAAAT-AAATAAAAATAA
1 AATAAA--AAATAAAATAATAATAA
* *
84991889 AAGAACAATAAT-TAATAATAAT-A
1 AATAA-AA-AATAAAATAATAATAA
* *
84991912 AACAAAGAATGAAAATAA-AATAA
1 AATAAAAAAT-AAAATAATAATAA
84991935 AATAAAA
1 AATAAAA
84991942 TACAGAAAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 15
0.72 0.11 0.18
Matches are distributed among these distances:
21 3 0.05
22 4 0.07
23 17 0.28
24 31 0.51
25 2 0.03
26 4 0.07
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.21
Consensus pattern (23 bp):
AATAAAAAATAAAATAATAATAA
Found at i:84991928 original size:51 final size:47
Alignment explanation
Indices: 84991848--84991941 Score: 127
Period size: 48 Copynumber: 1.9 Consensus size: 47
84991838 CAGAATAAAA
*
84991848 AATAATAATAATAATAAAATAAATGAAAT-AAATAAAAATAAAAGAAC
1 AATAATAATAATAATAAAAAAAATGAAATAAAAT-AAAATAAAAGAAC
84991895 AATAATTAATAATAATAAACAAAGAATGAAAATAAAATAAAATAAAA
1 AATAA-TAATAATAATAAA-AAA-AATG-AAATAAAATAAAATAAAA
84991942 TACAGAAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
47 5 0.12
48 13 0.32
49 2 0.05
50 4 0.10
51 13 0.32
52 4 0.10
ACGTcount: A:0.72, C:0.02, G:0.04, T:0.21
Consensus pattern (47 bp):
AATAATAATAATAATAAAAAAAATGAAATAAAATAAAATAAAAGAAC
Found at i:85005166 original size:46 final size:46
Alignment explanation
Indices: 85005116--85005244 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
85005106 TGGTTGAGCA
*
85005116 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
85005162 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
85005208 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
85005245 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:85007463 original size:46 final size:46
Alignment explanation
Indices: 85007396--85007524 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
85007386 TGTAACCCGC
* * * *
85007396 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
85007442 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
85007488 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
85007525 TGCTCAACCA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:85007543 original size:46 final size:45
Alignment explanation
Indices: 85007404--85007543 Score: 131
Period size: 46 Copynumber: 3.0 Consensus size: 45
85007394 GCCCATAAGC
* ** * *
85007404 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
* *** *
85007450 GAACTCGAACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
85007496 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
85007542 GA
1 GA
85007544 CATGTCACTT
Statistics
Matches: 83, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
46 77 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:85013749 original size:21 final size:21
Alignment explanation
Indices: 85013718--85013758 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
85013708 ATAATTTTCA
*
85013718 TATTTTTAAC-ATAATTTAAT
1 TATTTTTAACAAGAATTTAAT
85013738 TATTTTTCAACAAGAATTTAA
1 TATTTTT-AACAAGAATTTAA
85013759 CCAGAATAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 3 0.17
22 8 0.44
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.49
Consensus pattern (21 bp):
TATTTTTAACAAGAATTTAAT
Found at i:85019236 original size:18 final size:18
Alignment explanation
Indices: 85019210--85019244 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
85019200 TTAAGTGTGC
* *
85019210 ATAATAAAATTAAAATAT
1 ATAAAAAAATCAAAATAT
85019228 ATAAAAAAATCAAAATA
1 ATAAAAAAATCAAAATA
85019245 AAACTTTGGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (18 bp):
ATAAAAAAATCAAAATAT
Found at i:85020177 original size:31 final size:33
Alignment explanation
Indices: 85020142--85020219 Score: 90
Period size: 34 Copynumber: 2.4 Consensus size: 33
85020132 TATTTTAACC
* *
85020142 TTTATATTGCAA-AAA-ATTTATTATTAATATA
1 TTTATATTGCAATAAATATTTATTAATAAAATA
*
85020173 TTTATAATTGTAATAAATATTTATTAATAAAATA
1 TTTAT-ATTGCAATAAATATTTATTAATAAAATA
*
85020207 TTAATATTG-AATA
1 TTTATATTGCAATA
85020220 TTTTCAATAA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
31 5 0.12
32 10 0.25
33 7 0.17
34 18 0.45
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.47
Consensus pattern (33 bp):
TTTATATTGCAATAAATATTTATTAATAAAATA
Found at i:85020272 original size:13 final size:14
Alignment explanation
Indices: 85020236--85020282 Score: 51
Period size: 13 Copynumber: 3.3 Consensus size: 14
85020226 ATAATATGTG
*
85020236 AATAATATTATTTAA
1 AATATTATT-TTTAA
85020251 AATCATTATTTTTAA
1 AAT-ATTATTTTTAA
*
85020266 AAT-TTATTATTAA
1 AATATTATTTTTAA
85020279 AATA
1 AATA
85020283 AAACTAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
13 12 0.43
15 11 0.39
16 5 0.18
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (14 bp):
AATATTATTTTTAA
Found at i:85020274 original size:16 final size:16
Alignment explanation
Indices: 85020241--85020281 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 16
85020231 ATGTGAATAA
85020241 TATTATTTAAAATCAT
1 TATTATTTAAAATCAT
85020257 TATT-TTTAAAAT--T
1 TATTATTTAAAATCAT
85020270 TATTA-TTAAAAT
1 TATTATTTAAAAT
85020282 AAAACTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 12 0.50
15 8 0.33
16 4 0.17
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (16 bp):
TATTATTTAAAATCAT
Found at i:85020329 original size:22 final size:20
Alignment explanation
Indices: 85020287--85020330 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
85020277 AAAATAAAAC
*
85020287 TAAAATATTAAATAATTTAT
1 TAAAATAATAAATAATTTAT
85020307 TAAAATAATAAACTATATTTAT
1 TAAAATAATAAA-TA-ATTTAT
85020329 TA
1 TA
85020331 TATTAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 11 0.52
21 2 0.10
22 8 0.38
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
TAAAATAATAAATAATTTAT
Found at i:85020768 original size:3 final size:3
Alignment explanation
Indices: 85020760--85020819 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
85020750 TGAATTTAAG
85020760 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
85020808 TAT TAT TAT TAT
1 TAT TAT TAT TAT
85020820 ATCCCTTATA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:85025294 original size:16 final size:16
Alignment explanation
Indices: 85025273--85025303 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85025263 ATAAATTTGA
85025273 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
85025289 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
85025304 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:85031546 original size:10 final size:10
Alignment explanation
Indices: 85031531--85031561 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
85031521 AAGTTTTCGA
85031531 ATATACATAT
1 ATATACATAT
85031541 ATATACATAT
1 ATATACATAT
*
85031551 ATATATATAT
1 ATATACATAT
85031561 A
1 A
85031562 CATGTACACG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (10 bp):
ATATACATAT
Found at i:85036031 original size:105 final size:105
Alignment explanation
Indices: 85035915--85036110 Score: 252
Period size: 105 Copynumber: 1.9 Consensus size: 105
85035905 ATTTGGCTCA
* * * * * * *
85035915 ATGCCTTGCTTTCTCATTGTGTCAACAATATTTTCAGCTTC-ACAAACCATCCC-TTCTCTGCAA
1 ATGCCTCGCTTTCTCATTATGCCAACAATATGTACAGCATCAAC-AACCATCCCATCCT-TGCAA
*
85035978 TGCGCATCAACCAATATATTATATGTGATAACATCAGGTTCG
64 TGCGCATCAACCAATATATTATACGTGATAACATCAGGTTCG
*
85036020 ATGCCTCGCTTTCTCATTATGCCAACAATATGTACAGCATCAACAATCATCCCATCCTTGCAATG
1 ATGCCTCGCTTTCTCATTATGCCAACAATATGTACAGCATCAACAACCATCCCATCCTTGCAATG
* * *
85036085 TGCATCGATCAATATATTATACGTGA
66 CGCATCAACCAATATATTATACGTGA
85036111 CAATATTAAG
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
105 72 0.94
106 5 0.06
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (105 bp):
ATGCCTCGCTTTCTCATTATGCCAACAATATGTACAGCATCAACAACCATCCCATCCTTGCAATG
CGCATCAACCAATATATTATACGTGATAACATCAGGTTCG
Found at i:85037360 original size:21 final size:23
Alignment explanation
Indices: 85037336--85037380 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
85037326 GAATTATATA
85037336 TTAAAAATATTT-T-TTTTATTT
1 TTAAAAATATTTATATTTTATTT
**
85037357 TTAATCATATTTATATTTTATTT
1 TTAAAAATATTTATATTTTATTT
85037380 T
1 T
85037381 CAATTTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 10 0.50
22 1 0.05
23 9 0.45
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (23 bp):
TTAAAAATATTTATATTTTATTT
Found at i:85045978 original size:22 final size:24
Alignment explanation
Indices: 85045935--85045982 Score: 82
Period size: 22 Copynumber: 2.1 Consensus size: 24
85045925 ATTTGAAATG
85045935 TTTTATAATATATATTTTTTAAAA
1 TTTTATAATATATATTTTTTAAAA
85045959 TTTTA-AATATATA-TTTTTAAAA
1 TTTTATAATATATATTTTTTAAAA
85045981 TT
1 TT
85045983 ATTTTTTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 11 0.46
23 8 0.33
24 5 0.21
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (24 bp):
TTTTATAATATATATTTTTTAAAA
Found at i:85045986 original size:35 final size:34
Alignment explanation
Indices: 85045947--85046015 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 34
85045937 TTATAATATA
85045947 TATTTTTTAAAATTTTAAATATATATTTTTAAAAT
1 TATTTTTTAAAATTTTAAATAT-TATTTTTAAAAT
*
85045982 TATTTTTTAAAATTTTAAATATTATTTTTTAAAT
1 TATTTTTTAAAATTTTAAATATTATTTTTAAAAT
85046016 ATTAAATATA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 11 0.33
35 22 0.67
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (34 bp):
TATTTTTTAAAATTTTAAATATTATTTTTAAAAT
Found at i:85045988 original size:13 final size:14
Alignment explanation
Indices: 85045959--85045995 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
85045949 TTTTTTAAAA
85045959 TTTT-AAATATATAT
1 TTTTAAAAT-TATAT
85045973 TTTTAAAATTAT-T
1 TTTTAAAATTATAT
85045986 TTTTAAAATT
1 TTTTAAAATT
85045996 TTAAATATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 11 0.50
14 7 0.32
15 4 0.18
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TTTTAAAATTATAT
Found at i:85045996 original size:22 final size:22
Alignment explanation
Indices: 85045973--85046030 Score: 86
Period size: 21 Copynumber: 2.8 Consensus size: 22
85045963 AAATATATAT
85045973 TTTTAAA-ATTATTTTTTAAAA
1 TTTTAAATATTATTTTTTAAAA
85045994 TTTTAAATATTATTTTTT-AAA
1 TTTTAAATATTATTTTTTAAAA
*
85046015 TATTAAATA-TATTTTT
1 TTTTAAATATTATTTTT
85046031 AATAATATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
20 7 0.20
21 18 0.51
22 10 0.29
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTTAAATATTATTTTTTAAAA
Found at i:85046016 original size:14 final size:14
Alignment explanation
Indices: 85045959--85046019 Score: 57
Period size: 14 Copynumber: 4.9 Consensus size: 14
85045949 TTTTTTAAAA
85045959 TTTTAAATA-TATAT
1 TTTTAAATATTAT-T
85045973 TTTTAAA-ATTATT
1 TTTTAAATATTATT
85045986 TTTT-AA-A--A--
1 TTTTAAATATTATT
85045994 TTTTAAATATTATT
1 TTTTAAATATTATT
85046008 TTTTAAATATTA
1 TTTTAAATATTA
85046020 AATATATTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
8 4 0.10
9 2 0.05
10 2 0.05
12 4 0.10
13 6 0.15
14 22 0.55
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TTTTAAATATTATT
Found at i:85046041 original size:20 final size:21
Alignment explanation
Indices: 85045975--85046038 Score: 78
Period size: 21 Copynumber: 3.0 Consensus size: 21
85045965 ATATATATTT
*
85045975 TTAAA-ATTATTTTTTAAAATT
1 TTAAATATTA-TTTTTAAAATA
*
85045996 TTAAATATTATTTTTTAAATA
1 TTAAATATTATTTTTAAAATA
85046017 TTAAATA-TATTTTTAATAATA
1 TTAAATATTATTTTTAA-AATA
85046038 T
1 T
85046039 AAAAAATTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 8 0.21
21 26 0.68
22 4 0.11
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TTAAATATTATTTTTAAAATA
Found at i:85046105 original size:9 final size:9
Alignment explanation
Indices: 85046087--85046134 Score: 51
Period size: 10 Copynumber: 4.9 Consensus size: 9
85046077 TTATTATTAG
85046087 TTTTATAATA
1 TTTTA-AATA
85046097 TTTTAAATA
1 TTTTAAATA
*
85046106 TTTTTAATTTA
1 -TTTTAA-ATA
85046117 TTTTATAATA
1 TTTTA-AATA
85046127 TTTTAAAT
1 TTTTAAAT
85046135 TATGATTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
9 7 0.21
10 23 0.70
11 3 0.09
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (9 bp):
TTTTAAATA
Found at i:85046128 original size:21 final size:20
Alignment explanation
Indices: 85046095--85046157 Score: 72
Period size: 24 Copynumber: 2.9 Consensus size: 20
85046085 AGTTTTATAA
*
85046095 TATTTTAAATATTTTTAATT
1 TATTTTAAATATTTTAAATT
85046115 TATTTTATAATATTTTAAATT
1 TATTTTA-AATATTTTAAATT
85046136 ATGATTTTTAAATTATTTTAAA
1 -T-A-TTTTAAA-TATTTTAAA
85046158 GATATTCAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
20 7 0.19
21 12 0.32
22 1 0.03
23 3 0.08
24 14 0.38
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (20 bp):
TATTTTAAATATTTTAAATT
Found at i:85046156 original size:10 final size:10
Alignment explanation
Indices: 85046082--85046157 Score: 50
Period size: 10 Copynumber: 7.1 Consensus size: 10
85046072 CAAATTTATT
85046082 ATTAGTTTTATA
1 ATTA-TTTTA-A
85046094 A-TATTTTAA
1 ATTATTTTAA
85046103 A-TATTTTTAA
1 ATTA-TTTTAA
*
85046113 TTTATTTTATA
1 ATTATTTTA-A
85046124 A-TATTTTAA
1 ATTATTTTAA
85046133 ATTATGATTTTTAA
1 A-T-T-A-TTTTAA
85046147 ATTATTTTAA
1 ATTATTTTAA
85046157 A
1 A
85046158 GATATTCAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 18
0.73 0.03 0.24
Matches are distributed among these distances:
9 6 0.11
10 30 0.56
11 6 0.11
12 3 0.06
13 2 0.04
14 7 0.13
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (10 bp):
ATTATTTTAA
Found at i:85046278 original size:16 final size:16
Alignment explanation
Indices: 85046252--85046299 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
85046242 AATAAAAAAT
85046252 ATTTA-TTAAAAATAA
1 ATTTATTTAAAAATAA
*
85046267 ATTTATTTAAAAATAT
1 ATTTATTTAAAAATAA
* *
85046283 ATATATTAAAAAATAA
1 ATTTATTTAAAAATAA
85046299 A
1 A
85046300 AATTTAAATC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
15 5 0.18
16 23 0.82
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
ATTTATTTAAAAATAA
Found at i:85046813 original size:20 final size:20
Alignment explanation
Indices: 85046790--85046854 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 20
85046780 ATAATTTTTT
85046790 AATTTTAGTACACATTCATA
1 AATTTTAGTACACATTCATA
* ** *
85046810 AATTTATA-TATTA-ATTTTTT
1 AATTT-TAGTA-CACATTCATA
85046830 AATTTTAGTACACATTCATA
1 AATTTTAGTACACATTCATA
85046850 AATTT
1 AATTT
85046855 ATATACTTAA
Statistics
Matches: 33, Mismatches: 8, Indels: 8
0.67 0.16 0.16
Matches are distributed among these distances:
19 3 0.09
20 27 0.82
21 3 0.09
ACGTcount: A:0.38, C:0.09, G:0.03, T:0.49
Consensus pattern (20 bp):
AATTTTAGTACACATTCATA
Found at i:85046825 original size:40 final size:41
Alignment explanation
Indices: 85046781--85046865 Score: 163
Period size: 40 Copynumber: 2.1 Consensus size: 41
85046771 GTGTTAGTTA
85046781 TAATTTTTTAATTTTAGTACACATTCATAAATTTATATA-T
1 TAATTTTTTAATTTTAGTACACATTCATAAATTTATATACT
85046821 TAATTTTTTAATTTTAGTACACATTCATAAATTTATATACT
1 TAATTTTTTAATTTTAGTACACATTCATAAATTTATATACT
85046862 TAAT
1 TAAT
85046866 ATATATTTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
40 39 0.89
41 5 0.11
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.52
Consensus pattern (41 bp):
TAATTTTTTAATTTTAGTACACATTCATAAATTTATATACT
Found at i:85046876 original size:40 final size:40
Alignment explanation
Indices: 85046789--85046876 Score: 133
Period size: 40 Copynumber: 2.2 Consensus size: 40
85046779 TATAATTTTT
* *
85046789 TAATTTTAGTACACATTCATAAATTTATATATTAATTTTT
1 TAATTTTAGTACACATTCATAAATTTATATATTAATTATA
85046829 TAATTTTAGTACACATTCATAAATTTATATACTTAA-TATA
1 TAATTTTAGTACACATTCATAAATTTATATA-TTAATTATA
*
85046869 TATTTTTA
1 TAATTTTA
85046877 ATAGGTAAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 40 0.91
41 4 0.09
ACGTcount: A:0.39, C:0.08, G:0.02, T:0.51
Consensus pattern (40 bp):
TAATTTTAGTACACATTCATAAATTTATATATTAATTATA
Found at i:85047138 original size:16 final size:16
Alignment explanation
Indices: 85047117--85047152 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
85047107 AAAAACTTAA
85047117 AAAATTTAAATATATT
1 AAAATTTAAATATATT
*
85047133 AAAATTTAAATATGTT
1 AAAATTTAAATATATT
85047149 AAAA
1 AAAA
85047153 GAAAATGTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
AAAATTTAAATATATT
Found at i:85047182 original size:79 final size:77
Alignment explanation
Indices: 85047099--85047256 Score: 171
Period size: 79 Copynumber: 2.0 Consensus size: 77
85047089 ATATATTTAA
85047099 AATTTTAAAAAAACTT-AAAAAATTTAAATATATTAAAA-TTT-AA-ATATGTTAAAAGAAAATG
1 AATTTT-AAAAAACTTGAAAAAATTTAAATATATTAAAATTTTGAACATAT-TT--AA-AAAAT-
*
85047160 TTGAGTATAACCAATTTT
60 TTAAGTATAACCAATTTT
** * * * *
85047178 AATTTTTTAATAGTTGAATATATTTAAATATATTAAAATTTTGAACATATTTAAAAAATTTAAGT
1 AATTTTAAAAAACTTGAAAAAATTTAAATATATTAAAATTTTGAACATATTTAAAAAATTTAAGT
85047243 ATAACCAATTTT
66 ATAACCAATTTT
85047255 AA
1 AA
85047257 AATTTTAATA
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
77 19 0.28
78 10 0.15
79 28 0.41
80 3 0.04
81 4 0.06
82 4 0.06
ACGTcount: A:0.50, C:0.04, G:0.06, T:0.41
Consensus pattern (77 bp):
AATTTTAAAAAACTTGAAAAAATTTAAATATATTAAAATTTTGAACATATTTAAAAAATTTAAGT
ATAACCAATTTT
Found at i:85049086 original size:30 final size:30
Alignment explanation
Indices: 85049050--85049119 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 30
85049040 CGCAGAGCAA
* * *
85049050 TTCATATCACTCAGACATTGGCGGTTCAAG
1 TTCATATCACACAGACATGGGCGATTCAAG
*
85049080 TTCATATCACACAGACATGGGCGATTCGAG
1 TTCATATCACACAGACATGGGCGATTCAAG
85049110 TTCATATCAC
1 TTCATATCAC
85049120 CCGGATATAG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (30 bp):
TTCATATCACACAGACATGGGCGATTCAAG
Found at i:85049141 original size:30 final size:30
Alignment explanation
Indices: 85049050--85049154 Score: 102
Period size: 30 Copynumber: 3.5 Consensus size: 30
85049040 CGCAGAGCAA
* * * *
85049050 TTCATATCACTCAGACATTGGCGGTTCAAG
1 TTCATATCACCCAGACATAGGCGATTCGAG
* *
85049080 TTCATATCACACAGACATGGGCGATTCGAG
1 TTCATATCACCCAGACATAGGCGATTCGAG
* * * *
85049110 TTCATATCACCCGGATATAGGCGTTTTGAG
1 TTCATATCACCCAGACATAGGCGATTCGAG
* *
85049140 TTTATTTCACCCAGA
1 TTCATATCACCCAGA
85049155 GCAATCACCG
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (30 bp):
TTCATATCACCCAGACATAGGCGATTCGAG
Found at i:85050772 original size:13 final size:13
Alignment explanation
Indices: 85050754--85050779 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85050744 GATCGGTAGT
85050754 ACATTTCTATTAC
1 ACATTTCTATTAC
85050767 ACATTTCTATTAC
1 ACATTTCTATTAC
85050780 TGTCTTGTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (13 bp):
ACATTTCTATTAC
Found at i:85052681 original size:24 final size:24
Alignment explanation
Indices: 85052640--85052695 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
85052630 AGGTCATATC
*
85052640 TTTAAAAATAAAATATTTTAAATAA
1 TTTAAAAATAAAATATTTAAAAT-A
* *
85052665 TTTAAAAATCATA-ATTTAAAATA
1 TTTAAAAATAAAATATTTAAAATA
85052688 TTATAAAA
1 TT-TAAAA
85052696 CAAATTAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 3 0.11
24 13 0.48
25 11 0.41
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (24 bp):
TTTAAAAATAAAATATTTAAAATA
Found at i:85052825 original size:18 final size:17
Alignment explanation
Indices: 85052779--85052825 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
85052769 ATATCTTTAA
85052779 AATATTT-AAATATTTT
1 AATATTTAAAATATTTT
*
85052795 ATATTATTAAAAATATATTT
1 A-A-TATTTAAAATAT-TTT
85052815 AATATTTAAAA
1 AATATTTAAAA
85052826 ATAATTCCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
16 1 0.04
17 1 0.04
18 12 0.48
19 7 0.28
20 4 0.16
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
AATATTTAAAATATTTT
Found at i:85058994 original size:20 final size:21
Alignment explanation
Indices: 85058959--85058998 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
85058949 AGACAAGCGA
*
85058959 TACTCCACAGCAGGTGGAGTG
1 TACTCCACAACAGGTGGAGTG
85058980 TACTCCA-AACAGGTGGAGT
1 TACTCCACAACAGGTGGAGT
85058999 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.28, C:0.23, G:0.30, T:0.20
Consensus pattern (21 bp):
TACTCCACAACAGGTGGAGTG
Found at i:85063997 original size:3 final size:3
Alignment explanation
Indices: 85063983--85064069 Score: 65
Period size: 3 Copynumber: 28.3 Consensus size: 3
85063973 GAGCTTTGTT
* * *
85063983 TTA TTT TTA TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
85064028 TT- TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
85064070 ATATGCCCTC
Statistics
Matches: 68, Mismatches: 8, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
2 5 0.07
3 54 0.79
4 7 0.10
5 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:85064000 original size:12 final size:12
Alignment explanation
Indices: 85063983--85064069 Score: 81
Period size: 12 Copynumber: 7.1 Consensus size: 12
85063973 GAGCTTTGTT
*
85063983 TTATTTTTATTA
1 TTATTTATATTA
* *
85063995 TTATTTTTACTA
1 TTATTTATATTA
85064007 TTATTTATATTA
1 TTATTTATATTA
85064019 TTA-TTATTATT-
1 TTATTTA-TATTA
85064030 TCTCATGTATATATTA
1 T-T-AT-T-TATATTA
85064046 TTATTTATATTA
1 TTATTTATATTA
85064058 TTA-TTATATTA
1 TTATTTATATTA
85064069 T
1 T
85064070 ATATGCCCTC
Statistics
Matches: 65, Mismatches: 3, Indels: 15
0.78 0.04 0.18
Matches are distributed among these distances:
11 13 0.20
12 39 0.60
13 2 0.03
14 2 0.03
15 6 0.09
16 3 0.05
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (12 bp):
TTATTTATATTA
Found at i:85064044 original size:21 final size:18
Alignment explanation
Indices: 85063983--85064073 Score: 91
Period size: 18 Copynumber: 5.1 Consensus size: 18
85063973 GAGCTTTGTT
*
85063983 TTATTTTTATTA-TTAT-
1 TTATTATTATTATTTATA
*
85063999 TT-TTACTATTATTTATA
1 TTATTATTATTATTTATA
*
85064016 TTATTATTATTATTTCTCA
1 TTATTATTATTATTTAT-A
85064035 TGTATATATTATTATTTATA
1 T-TAT-TATTATTATTTATA
85064055 TTATTATTA-TATTATATA
1 TTATTATTATTATT-TATA
85064073 T
1 T
85064074 GCCCTCTCCA
Statistics
Matches: 63, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
15 7 0.11
16 6 0.10
17 6 0.10
18 22 0.35
19 5 0.08
20 5 0.08
21 12 0.19
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (18 bp):
TTATTATTATTATTTATA
Found at i:85064192 original size:12 final size:13
Alignment explanation
Indices: 85064143--85064197 Score: 55
Period size: 12 Copynumber: 4.5 Consensus size: 13
85064133 TTCTGACTAC
*
85064143 TATTATTATATA-
1 TATTATTATGTAT
85064155 TA-TATATATGTAT
1 TATTAT-TATGTAT
*
85064168 TATTGTT-TGTAT
1 TATTATTATGTAT
85064180 TATTATTAT-TAT
1 TATTATTATGTAT
85064192 TATTAT
1 TATTAT
85064198 CACCCCTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
11 3 0.08
12 27 0.75
13 4 0.11
14 2 0.06
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (13 bp):
TATTATTATGTAT
Found at i:85064330 original size:12 final size:12
Alignment explanation
Indices: 85064315--85064396 Score: 50
Period size: 12 Copynumber: 7.0 Consensus size: 12
85064305 TTTATGTATA
85064315 TATATATATATT
1 TATATATATATT
85064327 TATATATAGTA-T
1 TATATATA-TATT
*
85064339 TAT-TATTTACTT
1 TATATATATA-TT
*
85064351 TACTTTA-ATA-T
1 TA-TATATATATT
* *
85064362 TAT-T-TTTATG
1 TATATATATATT
85064372 TATATATATATT
1 TATATATATATT
85064384 TATATATAGTATT
1 TATATATA-TATT
85064397 ATTATTTACT
Statistics
Matches: 54, Mismatches: 6, Indels: 19
0.68 0.08 0.24
Matches are distributed among these distances:
9 3 0.06
10 6 0.11
11 7 0.13
12 27 0.50
13 9 0.17
14 2 0.04
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (12 bp):
TATATATATATT
Found at i:85064399 original size:57 final size:57
Alignment explanation
Indices: 85064315--85064427 Score: 217
Period size: 57 Copynumber: 2.0 Consensus size: 57
85064305 TTTATGTATA
*
85064315 TATATATATATTTATATATAGTATTATTATTTACTTTACTTTAATATTATTTTTATG
1 TATATATATATTTATATATAGTATTATTATTTACTTTACTTTAATATTATTCTTATG
85064372 TATATATATATTTATATATAGTATTATTATTTACTTTACTTTAATATTATTCTTAT
1 TATATATATATTTATATATAGTATTATTATTTACTTTACTTTAATATTATTCTTAT
85064428 TATCATTATA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.34, C:0.04, G:0.03, T:0.59
Consensus pattern (57 bp):
TATATATATATTTATATATAGTATTATTATTTACTTTACTTTAATATTATTCTTATG
Found at i:85064421 original size:20 final size:18
Alignment explanation
Indices: 85064281--85064422 Score: 67
Period size: 20 Copynumber: 7.4 Consensus size: 18
85064271 CTAATACTAT
85064281 TATTATTATATATTAGTGT-A
1 TATTATT-TAT-TTA-TGTAA
* *
85064301 TATT-TTTATGTATATATA
1 TATTATTTATTTATGTA-A
* *
85064319 TATATATTTATATATAGTAT
1 TAT-TATTTATTTAT-GTAA
*
85064339 TATTATTTACTTTACTTTAA
1 TATTATTTA-TTTA-TGTAA
85064359 TATTA-TT-TTTATGTATA
1 TATTATTTATTTATGTA-A
* *
85064376 TATATATTTATATATAGTAT
1 TAT-TATTTATTTAT-GTAA
*
85064396 TATTATTTACTTTACTTTAA
1 TATTATTTA-TTTA-TGTAA
85064416 TATTATT
1 TATTATT
85064423 CTTATTATCA
Statistics
Matches: 94, Mismatches: 14, Indels: 28
0.69 0.10 0.21
Matches are distributed among these distances:
16 5 0.05
17 10 0.11
18 9 0.10
19 19 0.20
20 44 0.47
21 7 0.07
ACGTcount: A:0.34, C:0.03, G:0.04, T:0.59
Consensus pattern (18 bp):
TATTATTTATTTATGTAA
Found at i:85066281 original size:104 final size:104
Alignment explanation
Indices: 85066124--85066316 Score: 237
Period size: 104 Copynumber: 1.9 Consensus size: 104
85066114 AACATCAGGA
* * * **
85066124 TCAATGCCTTGCATTCTCATTGTGCAATAATATATTCAGCTTCAGACACCATCCTTTCCTTGCAA
1 TCAATGCCTTGCATTCTCATTGTGCAACAATATATACAGCGTCAGACACCATCCCATCCTTGCAA
*
85066189 TGCGCATCAACCAATATATTTTATGTCACAACATTAGAC
66 TGCGCATCAACCAATATATATTATGTCACAACATTAGAC
* * *
85066228 TCAATGCCTT-CTTTCTCATTGTGCCAACAATATGTACAGCGTCAG-CAATCATCCCATCCTTGC
1 TCAATGCCTTGCATTCTCATTGTG-CAACAATATATACAGCGTCAGAC-ACCATCCCATCCTTGC
* * * *
85066291 GATGTGCATCGATCAATATATATTAT
64 AATGCGCATCAACCAATATATATTAT
85066317 ACATGGCAAT
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
103 13 0.18
104 61 0.82
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (104 bp):
TCAATGCCTTGCATTCTCATTGTGCAACAATATATACAGCGTCAGACACCATCCCATCCTTGCAA
TGCGCATCAACCAATATATATTATGTCACAACATTAGAC
Done.