Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 295 of 444
Found at i:85327780 original size:133 final size:133
Alignment explanation
Indices: 85327542--85327946 Score: 497
Period size: 133 Copynumber: 3.0 Consensus size: 133
85327532 AATTCACGGG
* * * *
85327542 TCTTATCTCCCTGAGCAGTAGTGGAGCAGACCAAAGAT-GGCGAATCTTATCTCCGTGTATCGGC
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAG-TCGGCGAATCTTATCTCCATATATCGGC
* * * *
85327606 AATGGAATAGATTTAAGCCGCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATTG
65 AATGGAGTAAATTTAAGCCACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATTG
85327671 CAGA
130 CAGA
* ** *
85327675 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGTCGGCGAATCTTATCTCCATAAATCGGCA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGTCGGCGAATCTTATCTCCATATATCGGCA
* * * * * * * *
85327740 ATGGAGTAAATTTAAGCCACCAGCCTTGTCTCCCTGAAGTTGTAGTGGATCAGACTAAAAATTGT
66 ATGGAGTAAATTTAAGCCACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATTGC
85327805 AGA
131 AGA
* * * * * * * *
85327808 TCTTATCTCCATAAGCAGTAGTAGAGCAAATCAAAGACGACGAATCTTATCCCCATTTAGCGGCA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGTCGGCGAATCTTATCTCCATATATCGGCA
* * * *
85327873 ATGAAGCAAATTTAAGCCACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGC
66 ATGGAGTAAATTTAAGCCACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATTGC
*
85327938 AAA
131 AGA
85327941 TCTTAT
1 TCTTAT
85327947 TTCTCTGAAG
Statistics
Matches: 227, Mismatches: 44, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
132 1 0.00
133 226 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (133 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGTCGGCGAATCTTATCTCCATATATCGGCA
ATGGAGTAAATTTAAGCCACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATTGC
AGA
Found at i:85331836 original size:8 final size:8
Alignment explanation
Indices: 85331823--85331852 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
85331813 CAAACACTAT
85331823 AAAAATAA
1 AAAAATAA
85331831 AAAAATAAA
1 AAAAAT-AA
85331840 AAAAATAA
1 AAAAATAA
85331848 AAAAA
1 AAAAA
85331853 AACACGATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (8 bp):
AAAAATAA
Found at i:85331854 original size:10 final size:9
Alignment explanation
Indices: 85331823--85331853 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
85331813 CAAACACTAT
85331823 AAAAAT-AA
1 AAAAATAAA
85331831 AAAAATAAA
1 AAAAATAAA
85331840 AAAAATAAA
1 AAAAATAAA
85331849 AAAAA
1 AAAAA
85331854 ACACGATGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 6 0.27
9 16 0.73
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (9 bp):
AAAAATAAA
Found at i:85339297 original size:21 final size:23
Alignment explanation
Indices: 85339247--85339321 Score: 62
Period size: 24 Copynumber: 3.0 Consensus size: 23
85339237 TATTAAATAG
85339247 AATCAAATTAATACTAAAATATAT
1 AATCAAA-TAATACTAAAATATAT
* *
85339271 ATTCAAATAACTAC-AAAATTAAAT
1 AATCAAATAA-TACTAAAA-TATAT
*
85339295 CAAATCAAACTAATACCAAAATATAT
1 --AATCAAA-TAATACTAAAATATAT
85339321 A
1 A
85339322 TTCGAGCAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
23 7 0.17
24 14 0.34
26 13 0.32
27 7 0.17
ACGTcount: A:0.59, C:0.13, G:0.00, T:0.28
Consensus pattern (23 bp):
AATCAAATAATACTAAAATATAT
Found at i:85339333 original size:50 final size:50
Alignment explanation
Indices: 85339238--85339339 Score: 134
Period size: 50 Copynumber: 2.0 Consensus size: 50
85339228 TCAAGCACCT
* * *
85339238 ATTAAATAGAATCAAATTAATACTAAAATATATATTCAAATAACTACAAA
1 ATTAAATAGAATCAAACTAATACCAAAATATATATTCAAACAACTACAAA
* * *
85339288 ATTAAATCA-AATCAAACTAATACCAAAATATATATTCGAGCAACTATAAA
1 ATTAAAT-AGAATCAAACTAATACCAAAATATATATTCAAACAACTACAAA
85339338 AT
1 AT
85339340 ATATTCGAGC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
50 44 0.98
51 1 0.02
ACGTcount: A:0.56, C:0.13, G:0.03, T:0.28
Consensus pattern (50 bp):
ATTAAATAGAATCAAACTAATACCAAAATATATATTCAAACAACTACAAA
Found at i:85339343 original size:21 final size:21
Alignment explanation
Indices: 85339317--85339361 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
85339307 ATACCAAAAT
85339317 ATATATTCGAGCAACTATAAA
1 ATATATTCGAGCAACTATAAA
85339338 ATATATTCGAGCAACTATAAA
1 ATATATTCGAGCAACTATAAA
85339359 ATA
1 ATA
85339362 GAATCTAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.49, C:0.13, G:0.09, T:0.29
Consensus pattern (21 bp):
ATATATTCGAGCAACTATAAA
Found at i:85341411 original size:27 final size:27
Alignment explanation
Indices: 85341363--85341467 Score: 135
Period size: 27 Copynumber: 3.9 Consensus size: 27
85341353 GCGAGGCTGC
* *
85341363 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
85341390 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
85341416 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
85341443 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
85341468 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
26 8 0.11
27 60 0.85
28 3 0.04
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:85343099 original size:26 final size:26
Alignment explanation
Indices: 85343063--85343170 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
85343053 TGAAATTCCC
*
85343063 ATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCCATT
85343089 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
85343115 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
85343141 ATTATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
85343167 ATCA
1 ATCA
85343171 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:85343580 original size:25 final size:25
Alignment explanation
Indices: 85343552--85343604 Score: 90
Period size: 25 Copynumber: 2.1 Consensus size: 25
85343542 TCATGAAAGA
85343552 TAAATTTTACCTATGACT-AGGTATT
1 TAAATTTTACCTATGACTCA-GTATT
85343577 TAAATTTTACCTATGACTCAGTATT
1 TAAATTTTACCTATGACTCAGTATT
85343602 TAA
1 TAA
85343605 TTCAAATTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 26 0.96
26 1 0.04
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.43
Consensus pattern (25 bp):
TAAATTTTACCTATGACTCAGTATT
Found at i:85345303 original size:6 final size:6
Alignment explanation
Indices: 85345287--85345317 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
85345277 TAAGTTTCCA
*
85345287 AAAATG GAAATG AAAATG AAAATG AAAATG A
1 AAAATG AAAATG AAAATG AAAATG AAAATG A
85345318 TCCATTTGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.19, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:85345509 original size:26 final size:26
Alignment explanation
Indices: 85345478--85345537 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
85345468 TTTTACCAAC
*
85345478 GATAAAATGGTCAAAATTTTACTAGAG
1 GATAAAATCGTCAAAATTTTACTAG-G
*
85345505 G-TAAAATCGTCAAAATTTTGCTAGG
1 GATAAAATCGTCAAAATTTTACTAGG
85345530 GATAAAAT
1 GATAAAAT
85345538 AGGGATAAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 2 0.07
26 27 0.90
27 1 0.03
ACGTcount: A:0.43, C:0.08, G:0.18, T:0.30
Consensus pattern (26 bp):
GATAAAATCGTCAAAATTTTACTAGG
Found at i:85346433 original size:16 final size:16
Alignment explanation
Indices: 85346412--85346442 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85346402 CTCCCAAGAC
85346412 ACACCTCAACCTTATA
1 ACACCTCAACCTTATA
*
85346428 ACACCTCAATCTTAT
1 ACACCTCAACCTTAT
85346443 CCATTTACAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.29
Consensus pattern (16 bp):
ACACCTCAACCTTATA
Found at i:85348420 original size:26 final size:24
Alignment explanation
Indices: 85348364--85348420 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 24
85348354 CAAGACACAT
*
85348364 AGCATAATAACCAAAATGAACTTA
1 AGCATAATAAACAAAATGAACTTA
85348388 AGTCATAATCAAACAAAACTGAA-TTCA
1 AG-CATAAT-AAACAAAA-TGAACTT-A
85348415 AGCATA
1 AGCATA
85348421 GAAGTTAGGC
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
24 2 0.07
25 6 0.21
26 13 0.46
27 7 0.25
ACGTcount: A:0.53, C:0.18, G:0.09, T:0.21
Consensus pattern (24 bp):
AGCATAATAAACAAAATGAACTTA
Found at i:85358498 original size:17 final size:17
Alignment explanation
Indices: 85358476--85358510 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
85358466 CTCCCGGAAG
85358476 ATAGAAACATAGATGTA
1 ATAGAAACATAGATGTA
85358493 ATAGAAACATAGATGTA
1 ATAGAAACATAGATGTA
85358510 A
1 A
85358511 CTAACTCAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (17 bp):
ATAGAAACATAGATGTA
Found at i:85359395 original size:21 final size:22
Alignment explanation
Indices: 85359371--85359415 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
85359361 CAATTGAAGT
85359371 TTGAAAATAG-AATTAAATATA
1 TTGAAAATAGAAATTAAATATA
*
85359392 TTGAATATAGAAATTAAATATA
1 TTGAAAATAGAAATTAAATATA
85359414 TT
1 TT
85359416 TTCTCATACA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (22 bp):
TTGAAAATAGAAATTAAATATA
Found at i:85361325 original size:35 final size:35
Alignment explanation
Indices: 85361146--85361319 Score: 226
Period size: 35 Copynumber: 5.0 Consensus size: 35
85361136 AAACCATATT
* * **
85361146 GAGCTGTGAAACTTAGGTATGGTATTATCCATATT
1 GAGCTATGAAACGTAGGTATGGTATTATCCATACC
*
85361181 GAGCTATGACACGTAGGTATGGTATTATCCATACC
1 GAGCTATGAAACGTAGGTATGGTATTATCCATACC
*
85361216 GAGCTAT-AATATGTAGGTATGGTATTATCCATACC
1 GAGCTATGAA-ACGTAGGTATGGTATTATCCATACC
* *
85361251 GAGCTAT-AATACGTAGGTATTGTATTTTCCATACC
1 GAGCTATGAA-ACGTAGGTATGGTATTATCCATACC
* *
85361286 GAGTTATGAAACGTAGGTATGGTATTAACCATAC
1 GAGCTATGAAACGTAGGTATGGTATTATCCATAC
85361320 TGAGTTGTGA
Statistics
Matches: 123, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
34 1 0.01
35 120 0.98
36 2 0.02
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.33
Consensus pattern (35 bp):
GAGCTATGAAACGTAGGTATGGTATTATCCATACC
Found at i:85364023 original size:56 final size:56
Alignment explanation
Indices: 85363938--85364128 Score: 301
Period size: 56 Copynumber: 3.4 Consensus size: 56
85363928 CTATGGCATT
* * *
85363938 GATATATGTGTGCGAGGAAGACCATGTTTAATACGTTGGCATTGATATGTGACTCT
1 GATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTCC
* *
85363994 GATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGACTCC
1 GATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTCC
* *
85364050 GATATATGTGTACGAGTAAGACCATGTTTAATATGTTGGCATCGATATGTGACTCC
1 GATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTCC
* *
85364106 GATTTATGTGTGTGAGTAAGACC
1 GATATATGTGTGCGAGTAAGACC
85364129 CTGTCTGGGA
Statistics
Matches: 123, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 123 1.00
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTCC
Found at i:85364146 original size:56 final size:54
Alignment explanation
Indices: 85363938--85364157 Score: 210
Period size: 56 Copynumber: 3.9 Consensus size: 54
85363928 CTATGGCATT
* * * *
85363938 GATATATGTGTGCGAGGAAGACCATGTTTAATAC-GTTGGCATTGATATGTGACTCT
1 GATATATGTGTGCGAGTAAGACCCTG-TTAA-ACAG-TGGCATCGATATGTGACTCC
*
85363994 GATATATGTGTGCGAGTAAGACCAC-GTTTAATACATTGGCATCGATATGTGACTCC
1 GATATATGTGTGCGAGTAAGACC-CTG-TTAA-ACAGTGGCATCGATATGTGACTCC
* * * *
85364050 GATATATGTGTACGAGTAAGACCATGTTTAATATGTTGGCATCGATATGTGACTCC
1 GATATATGTGTGCGAGTAAGACCCTGTTAAACA-G-TGGCATCGATATGTGACTCC
* * ** *
85364106 GATTTATGTGTGTGAGTAAGACCCTGTCTGGGACAGTGGCATCAATATGTGA
1 GATATATGTGTGCGAGTAAGACCCTGT-T-AAACAGTGGCATCGATATGTGA
85364158 TTACATGAAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
54 2 0.01
55 3 0.02
56 130 0.94
57 2 0.01
58 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (54 bp):
GATATATGTGTGCGAGTAAGACCCTGTTAAACAGTGGCATCGATATGTGACTCC
Found at i:85364146 original size:112 final size:112
Alignment explanation
Indices: 85363938--85364157 Score: 307
Period size: 112 Copynumber: 2.0 Consensus size: 112
85363928 CTATGGCATT
* * *
85363938 GATATATGTGTGCGAGGAAGACCATGTTTAATACGTTGGCATTGATATGTGACTCTGATATATGT
1 GATATATGTGTACGAGGAAGACCATGTTTAATACGTTGGCATCGATATGTGACTCCGATATATGT
* * * *
85364003 GTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGACTCC
66 GTGCGAGTAAGACCACGTCTAAGACAGTGGCATCAATATGTGACTCC
* * *
85364050 GATATATGTGTACGAGTAAGACCATGTTTAATATGTTGGCATCGATATGTGACTCCGATTTATGT
1 GATATATGTGTACGAGGAAGACCATGTTTAATACGTTGGCATCGATATGTGACTCCGATATATGT
* **
85364115 GTGTGAGTAAGACC-CTGTCTGGGACAGTGGCATCAATATGTGA
66 GTGCGAGTAAGACCAC-GTCTAAGACAGTGGCATCAATATGTGA
85364158 TTACATGAAA
Statistics
Matches: 94, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
111 1 0.01
112 93 0.99
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (112 bp):
GATATATGTGTACGAGGAAGACCATGTTTAATACGTTGGCATCGATATGTGACTCCGATATATGT
GTGCGAGTAAGACCACGTCTAAGACAGTGGCATCAATATGTGACTCC
Found at i:85367444 original size:22 final size:22
Alignment explanation
Indices: 85367415--85367482 Score: 84
Period size: 22 Copynumber: 3.0 Consensus size: 22
85367405 TGCACAAATG
85367415 AACAGAGAGCACTAAAGTGCTA
1 AACAGAGAGCACTAAAGTGCTA
* *
85367437 TACAGAGAGCAC-AGATGTGCTA
1 AACAGAGAGCACTA-AAGTGCTA
*
85367459 AACAGAGAGCACTTAACGTGCTA
1 AACAGAGAGCAC-TAAAGTGCTA
85367482 A
1 A
85367483 TAATAGTACA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
21 1 0.03
22 29 0.74
23 8 0.21
24 1 0.03
ACGTcount: A:0.41, C:0.19, G:0.24, T:0.16
Consensus pattern (22 bp):
AACAGAGAGCACTAAAGTGCTA
Found at i:85368662 original size:2 final size:2
Alignment explanation
Indices: 85368655--85368701 Score: 52
Period size: 2 Copynumber: 26.5 Consensus size: 2
85368645 TCTTATGTTT
85368655 TA TA TA TA TA TA TA -A TA TA -A TA TA -A TA TA -A TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
85368692 TA T- TA TA TA T
1 TA TA TA TA TA T
85368702 TAATACTTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
1 6 0.15
2 33 0.85
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:85368668 original size:10 final size:10
Alignment explanation
Indices: 85368655--85368701 Score: 52
Period size: 9 Copynumber: 5.3 Consensus size: 10
85368645 TCTTATGTTT
85368655 TATATATATA
1 TATATATATA
85368665 TATA-ATATA
1 TATATATATA
85368674 -ATATA-ATA
1 TATATATATA
85368682 TA-ATA-ATA
1 TATATATATA
85368690 TATAT-TATA
1 TATATATATA
85368699 TAT
1 TAT
85368702 TAATACTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
8 14 0.42
9 15 0.45
10 4 0.12
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
TATATATATA
Found at i:85368674 original size:5 final size:5
Alignment explanation
Indices: 85368658--85368700 Score: 50
Period size: 5 Copynumber: 8.0 Consensus size: 5
85368648 TATGTTTTAT
*
85368658 ATATA TATATA ATATA ATATA ATATA ATAATA TATATT ATATA
1 ATATA -ATATA ATATA ATATA ATATA AT-ATA -ATATA ATATA
85368701 TTAATACTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
5 21 0.64
6 10 0.30
7 2 0.06
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (5 bp):
ATATA
Found at i:85379650 original size:39 final size:39
Alignment explanation
Indices: 85379569--85379770 Score: 323
Period size: 39 Copynumber: 5.2 Consensus size: 39
85379559 TATGGTGACC
* * *
85379569 CGCACAAATGCCTTCGGGACTTAGCCCGGATAACACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAACT
* *
85379609 CGCACAGTTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
85379648 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
*
85379687 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
* *
85379726 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
85379765 CGCACA
1 CGCACA
85379771 TTCATACACA
Statistics
Matches: 151, Mismatches: 11, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
39 135 0.89
40 16 0.11
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
Found at i:85384628 original size:47 final size:47
Alignment explanation
Indices: 85384574--85385002 Score: 669
Period size: 47 Copynumber: 9.1 Consensus size: 47
85384564 TTAGGATTTT
** *
85384574 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
85384621 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
85384668 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
85384715 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
85384762 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
85384809 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
85384856 ATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
85384903 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
85384950 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
85384997 ATGTGA
1 ATGTGA
85385003 AATATATATA
Statistics
Matches: 347, Mismatches: 35, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 347 1.00
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:85384676 original size:25 final size:25
Alignment explanation
Indices: 85384601--85384676 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
85384591 GTGTATATAT
85384601 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
85384626 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
85384648 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
85384673 GTGA
1 GTGA
85384677 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:85384796 original size:141 final size:141
Alignment explanation
Indices: 85384573--85385002 Score: 788
Period size: 141 Copynumber: 3.0 Consensus size: 141
85384563 TTTAGGATTT
** *
85384573 TATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
85384638 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
85384703 GCCGAATGGCC
131 GCCGAATGGCC
85384714 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
85384779 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
85384844 GCCGAATGGCC
131 GCCGAATGGCC
*
85384855 TATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
* *
85384920 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAA
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
*
85384985 GCCGAATGGTC
131 GCCGAATGGCC
*
85384996 AATGTGA
1 TATGTGA
85385003 AATATATATA
Statistics
Matches: 281, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
141 281 1.00
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (141 bp):
TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
GCCGAATGGCC
Found at i:85384817 original size:25 final size:25
Alignment explanation
Indices: 85384742--85384817 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
85384732 ATGCATATAT
85384742 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
85384767 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
85384789 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
85384814 GTGA
1 GTGA
85384818 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:85385389 original size:37 final size:37
Alignment explanation
Indices: 85385210--85385388 Score: 286
Period size: 37 Copynumber: 4.8 Consensus size: 37
85385200 AATATATTCA
* *
85385210 GGGTGAGACCCGATGACTACGTGTAGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
* *
85385247 GGGTAAGACCTGATGACTACGTGTGGAGAGTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
85385284 GGGTAAGACCCGATGACTACGTGTGGAGAGTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
85385321 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
* *
85385358 GGGTAAGACCCGATAACTTCGTGTGGAGATT
1 GGGTAAGACCCGATGACTACGTGTGGAGATT
85385389 TCGTCTGAGC
Statistics
Matches: 133, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 133 1.00
ACGTcount: A:0.24, C:0.18, G:0.34, T:0.25
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:85392039 original size:30 final size:30
Alignment explanation
Indices: 85391982--85392039 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
85391972 TAGGCACTTT
* *
85391982 CACACGGGTGATCTACATGCCCATGTGTGA
1 CACACGGGTGAGCTACACGCCCATGTGTGA
*
85392012 CACACGGGTAGAGC-ACACGCCCGTGTGT
1 CACACGGGT-GAGCTACACGCCCATGTGT
85392040 CTTGGCCGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 21 0.88
31 3 0.12
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.19
Consensus pattern (30 bp):
CACACGGGTGAGCTACACGCCCATGTGTGA
Found at i:85393963 original size:24 final size:26
Alignment explanation
Indices: 85393932--85393982 Score: 70
Period size: 24 Copynumber: 2.0 Consensus size: 26
85393922 TTTTAGGATT
85393932 GTTCTCTTTATC-T-TTTAGGGTTTA
1 GTTCTCTTTATCATATTTAGGGTTTA
*
85393956 GTTCTCTTTTTCATAGTTTAGGGTTTA
1 GTTCTCTTTATCATA-TTTAGGGTTTA
85393983 ATTTCTTGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 11 0.48
25 1 0.04
27 11 0.48
ACGTcount: A:0.14, C:0.12, G:0.18, T:0.57
Consensus pattern (26 bp):
GTTCTCTTTATCATATTTAGGGTTTA
Found at i:85396581 original size:20 final size:21
Alignment explanation
Indices: 85396549--85396609 Score: 81
Period size: 20 Copynumber: 3.0 Consensus size: 21
85396539 TTGTCTAGTA
85396549 AATCCTTAGAAATTTTGGTAT
1 AATCCTTAGAAATTTTGGTAT
* *
85396570 AA-CCTTATAAATTTTGATA-
1 AATCCTTAGAAATTTTGGTAT
*
85396589 AATCCATAGAAATTTTGGTAT
1 AATCCTTAGAAATTTTGGTAT
85396610 GCCAAAATGT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
19 2 0.06
20 29 0.88
21 2 0.06
ACGTcount: A:0.38, C:0.10, G:0.11, T:0.41
Consensus pattern (21 bp):
AATCCTTAGAAATTTTGGTAT
Found at i:85396673 original size:20 final size:20
Alignment explanation
Indices: 85396648--85396691 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
85396638 GGCACCAAGA
85396648 AAATCTTTAAAAATATTGGT
1 AAATCTTTAAAAATATTGGT
*
85396668 AAATCTTTAAAAGTATTGGT
1 AAATCTTTAAAAATATTGGT
85396688 AAAT
1 AAAT
85396692 TCTTATACTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.45, C:0.05, G:0.11, T:0.39
Consensus pattern (20 bp):
AAATCTTTAAAAATATTGGT
Found at i:85396742 original size:20 final size:21
Alignment explanation
Indices: 85396719--85396767 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
85396709 AAGACTTTAT
85396719 AAAT-TTAGGTAAATCCCTAG
1 AAATATTAGGTAAATCCCTAG
* *
85396739 AAATACT-GGTAAATCCTTAG
1 AAATATTAGGTAAATCCCTAG
85396759 AAATATTAG
1 AAATATTAG
85396768 TATCCAGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 22 0.92
21 2 0.08
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.31
Consensus pattern (21 bp):
AAATATTAGGTAAATCCCTAG
Found at i:85396904 original size:20 final size:21
Alignment explanation
Indices: 85396848--85396906 Score: 59
Period size: 20 Copynumber: 2.9 Consensus size: 21
85396838 TTGTATAACC
* *
85396848 TTAAAAATTTTGATAAA-TCT
1 TTAAATATTTTAATAAATTCT
* *
85396868 TTAAATATTTGATTAAATTC-
1 TTAAATATTTTAATAAATTCT
*
85396888 TTAATTATTTTAATAAATT
1 TTAAATATTTTAATAAATT
85396907 ATTAGAAATG
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
20 29 0.94
21 2 0.06
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.51
Consensus pattern (21 bp):
TTAAATATTTTAATAAATTCT
Found at i:85398553 original size:88 final size:88
Alignment explanation
Indices: 85398442--85398606 Score: 244
Period size: 88 Copynumber: 1.9 Consensus size: 88
85398432 GCACTGTCTG
* *
85398442 GTGTGATATTTGTATGTGTTTCATGGAAGCATTGAGAGAACAGGAAGGTTACCTGT-C-CAAAGA
1 GTGTGATATTTGGATGTGTTTCATGGAAGCACTGAGAGAACAGGAAGGTTACCTGTCCTCAAAGA
85398505 GAAAAGAGAAAAGGGTTACTGACCA
66 G--AAGAGAAAAGGGTTACTGACCA
* * **
85398530 GTGTGATATTTGGATGTGTTTCATGGAGGCACTGAGTGAACAGGAAGGTTAGTTGTCCTCAAAGA
1 GTGTGATATTTGGATGTGTTTCATGGAAGCACTGAGAGAACAGGAAGGTTACCTGTCCTCAAAGA
85398595 GAAGAGAAAAGG
66 GAAGAGAAAAGG
85398607 AAGGTTATAG
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
88 61 0.88
89 1 0.01
90 7 0.10
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.25
Consensus pattern (88 bp):
GTGTGATATTTGGATGTGTTTCATGGAAGCACTGAGAGAACAGGAAGGTTACCTGTCCTCAAAGA
GAAGAGAAAAGGGTTACTGACCA
Found at i:85401605 original size:2 final size:2
Alignment explanation
Indices: 85401598--85401636 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
85401588 TTCTGACATA
* *
85401598 AC AC AC AC AG AC AC AC AC AC AC AC AT AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
85401637 AACAACCATA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.44, G:0.03, T:0.03
Consensus pattern (2 bp):
AC
Found at i:85404168 original size:9 final size:9
Alignment explanation
Indices: 85404152--85404184 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
85404142 ATAATTAGAA
85404152 AATTAATTT
1 AATTAATTT
*
85404161 AGTTAATTT
1 AATTAATTT
85404170 AATTAA-TT
1 AATTAATTT
85404178 AATTAAT
1 AATTAAT
85404185 AATATTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (9 bp):
AATTAATTT
Found at i:85411723 original size:23 final size:23
Alignment explanation
Indices: 85411693--85411747 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
85411683 ATTTTGAACT
85411693 TCTGATAATTTATACATAAAACA
1 TCTGATAATTTATACATAAAACA
85411716 TCTGATAATTTATACATAAAACA
1 TCTGATAATTTATACATAAAACA
*
85411739 TCTGCTAAT
1 TCTGATAAT
85411748 AAATACTGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.36
Consensus pattern (23 bp):
TCTGATAATTTATACATAAAACA
Found at i:85417017 original size:46 final size:46
Alignment explanation
Indices: 85416948--85417119 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
85416938 TATGTGTGCT
85416948 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCC
* *
85416994 AATGTAAGACATGTCTGGGACATGCATC-G--ACATTGAGACGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATT---ATGAGAGCC
* * * * *
85417040 AGTATAAGACATGTCTGAGACATGCATCGGCCTCGAGATATGCA-AGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-TTATG-AGAGCC
*
85417088 AGTGTAAGACCTGTCTGGGACATGGCATCGGC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGC
85417120 TTGACATGTG
Statistics
Matches: 104, Mismatches: 12, Indels: 17
0.78 0.09 0.13
Matches are distributed among these distances:
43 5 0.05
45 1 0.01
46 60 0.58
47 1 0.01
48 25 0.24
49 10 0.10
50 1 0.01
51 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCC
Found at i:85417140 original size:92 final size:90
Alignment explanation
Indices: 85416942--85417242 Score: 272
Period size: 92 Copynumber: 3.2 Consensus size: 90
85416932 GGGTGATATG
* * * * *
85416942 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCCAATGTAAGACAT
1 TGTGCCAGTGTAAGACATGTCTGAGACATGCATCGGCC-CGAATATGAGAG-CAGTGTAAGACCT
85417006 GTCTGGGACAT-GCATCGACATTGAGACGA
64 GTCTGGGACATGGCATCGAC-TT-AGAC-A
* *
85417035 -GAGCCAGTATAAGACATGTCTGAGACATGCATCGGCCTCGAGATATGCA-AGCTAGTGTAAGAC
1 TGTGCCAGTGTAAGACATGTCTGAGACATGCATCGGCC-CGA-ATATG-AGAGC-AGTGTAAGAC
*
85417098 CTGTCTGGGACATGGCATCGGCTT-GACA
62 CTGTCTGGGACATGGCATCGACTTAGACA
* * * * *
85417126 TGTGTCAGTGTAAGACCTGTCT-AGGACATGGCATTGACACCGATAGATGAGAGGCAGTGTAAGA
1 TGTGCCAGTGTAAGACATGTCTGA-GACAT-GCATCGGC-CCGA-ATATGAGA-GCAGTGTAAGA
* *
85417190 CCTCTCTGGGACATGGCATCGACTTAGATA
61 CCTGTCTGGGACATGGCATCGACTTAGACA
85417220 TGTGAGCCAGTGTAAGACCATGT
1 TGT--GCCAGTGTAAGA-CATGT
85417243 TTGGAACATG
Statistics
Matches: 171, Mismatches: 22, Indels: 26
0.78 0.10 0.12
Matches are distributed among these distances:
91 2 0.01
92 60 0.35
93 48 0.28
94 38 0.22
95 8 0.05
96 11 0.06
97 4 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (90 bp):
TGTGCCAGTGTAAGACATGTCTGAGACATGCATCGGCCCGAATATGAGAGCAGTGTAAGACCTGT
CTGGGACATGGCATCGACTTAGACA
Found at i:85422218 original size:23 final size:23
Alignment explanation
Indices: 85422162--85422219 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
85422152 CCAATAACAG
*
85422162 ACTTTTGTTACTAGTAATACATT
1 ACTTTTGTTATTAGTAATACATT
* * * *
85422185 ACTTCTGTTATTAGTACTTCGTT
1 ACTTTTGTTATTAGTAATACATT
85422208 ACTTTTGTTATT
1 ACTTTTGTTATT
85422220 GACACTTTGA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.22, C:0.14, G:0.10, T:0.53
Consensus pattern (23 bp):
ACTTTTGTTATTAGTAATACATT
Found at i:85424949 original size:19 final size:20
Alignment explanation
Indices: 85424922--85424960 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
85424912 TTCATTGTTA
*
85424922 TTAATTTGTGTTGCA-ATTT
1 TTAAATTGTGTTGCATATTT
*
85424941 TTAAATTGTTTTGCATATTT
1 TTAAATTGTGTTGCATATTT
85424961 ATTTGAATCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.23, C:0.05, G:0.13, T:0.59
Consensus pattern (20 bp):
TTAAATTGTGTTGCATATTT
Found at i:85429873 original size:26 final size:26
Alignment explanation
Indices: 85429802--85429878 Score: 75
Period size: 26 Copynumber: 2.9 Consensus size: 26
85429792 ACATATTTTC
* * * *
85429802 TCAAACTTTTACTAGAGGTAAATTCT
1 TCAAAATTTTACTAGGGGTAAAATCA
* *
85429828 TCAAAAAATTTAC-CGAGGGTAAAATCA
1 TC-AAAATTTTACTAG-GGGTAAAATCA
85429855 TCAAAATTTTACTAGGGGTAAAAT
1 TCAAAATTTTACTAGGGGTAAAAT
85429879 AAGGATGTGA
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
26 21 0.52
27 19 0.47
ACGTcount: A:0.42, C:0.13, G:0.14, T:0.31
Consensus pattern (26 bp):
TCAAAATTTTACTAGGGGTAAAATCA
Found at i:85438269 original size:47 final size:47
Alignment explanation
Indices: 85438216--85438406 Score: 292
Period size: 47 Copynumber: 4.1 Consensus size: 47
85438206 TTAGGATTTT
** *
85438216 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGTATATATGAGATAAGGCCGAATGGCCA
* * *
85438263 ATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGAGATAAGGCCGAATGGCCA
*
85438310 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGAGATAAGGCCGAATGGCCA
* * *
85438357 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGTATATATGAGATAAGGCCGAATGGCCA
85438404 ATG
1 ATG
85438407 CGAAATGTTT
Statistics
Matches: 130, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGAGATAAGGCCGAATGGCCA
Found at i:85438510 original size:46 final size:46
Alignment explanation
Indices: 85438380--85438516 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
85438370 GAACATGTAT
* * *
85438380 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTTTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
85438426 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
85438472 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
85438517 TGTATATATA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:85444610 original size:9 final size:9
Alignment explanation
Indices: 85444596--85444623 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
85444586 TTCCAATCAA
85444596 CTTCATAGC
1 CTTCATAGC
85444605 CTTCATAGC
1 CTTCATAGC
85444614 CTTCATAGC
1 CTTCATAGC
85444623 C
1 C
85444624 AAAACCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.36, G:0.11, T:0.32
Consensus pattern (9 bp):
CTTCATAGC
Found at i:85455460 original size:32 final size:33
Alignment explanation
Indices: 85455424--85455546 Score: 126
Period size: 33 Copynumber: 3.8 Consensus size: 33
85455414 TACACTTGAG
*
85455424 GTGTACAT-TCCTTTCCAAGTGGTACACACAAA
1 GTGTACATAACCTTTCCAAGTGGTACACACAAA
* ** * *
85455456 GTGTACCTTTCCTTTTCATA-TGGTATACACAAA
1 GTGTACATAACCTTTCCA-AGTGGTACACACAAA
* *
85455489 GTATACCTAACCTTTCCAAGT-GTACACACAAA
1 GTGTACATAACCTTTCCAAGTGGTACACACAAA
* *
85455521 GTGTACATAACCTTTTCAAGTCGTAC
1 GTGTACATAACCTTTCCAAGTGGTAC
85455547 CATTTGGGTA
Statistics
Matches: 76, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
32 36 0.47
33 39 0.51
34 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.32
Consensus pattern (33 bp):
GTGTACATAACCTTTCCAAGTGGTACACACAAA
Found at i:85459206 original size:13 final size:13
Alignment explanation
Indices: 85459190--85459247 Score: 55
Period size: 13 Copynumber: 4.4 Consensus size: 13
85459180 TCACATTTCT
85459190 ATTTCAAGA-ATCC
1 ATTTCAA-ATATCC
85459203 ATTTCAAATATCC
1 ATTTCAAATATCC
* *
85459216 ATTTTCATATAACC
1 A-TTTCAAATATCC
**
85459230 ATTTCTTATATCC
1 ATTTCAAATATCC
85459243 ATTTC
1 ATTTC
85459248 CACACTATGA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
12 1 0.03
13 27 0.69
14 11 0.28
ACGTcount: A:0.33, C:0.22, G:0.02, T:0.43
Consensus pattern (13 bp):
ATTTCAAATATCC
Found at i:85461555 original size:31 final size:31
Alignment explanation
Indices: 85461514--85461577 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
85461504 CCTTTTCATA
*
85461514 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
85461545 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
85461576 TT
1 TT
85461578 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:85461823 original size:24 final size:24
Alignment explanation
Indices: 85461770--85461913 Score: 179
Period size: 24 Copynumber: 6.0 Consensus size: 24
85461760 TGCTTTATCA
*
85461770 TATAACTGGAGGCCT-AGCCTCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTT
* *
85461795 AATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
85461819 TATAACTGGGGCATAAGCCC--TT
1 TATAACTGGGGCATAAGCCCTTTT
*
85461841 TAGTAACTGGGGCGTAAGCCCTTTT
1 TA-TAACTGGGGCATAAGCCCTTTT
*
85461866 GATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTT
*
85461889 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
85461913 T
1 T
85461914 CACTTCCTCC
Statistics
Matches: 104, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
22 4 0.04
23 39 0.38
24 46 0.44
25 15 0.14
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (24 bp):
TATAACTGGGGCATAAGCCCTTTT
Found at i:85461851 original size:23 final size:23
Alignment explanation
Indices: 85461792--85461911 Score: 177
Period size: 23 Copynumber: 5.1 Consensus size: 23
85461782 CCTAGCCTCT
*
85461792 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
85461815 TTTTTATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
* *
85461839 TTTAGTAACTGGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
85461862 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
85461886 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
85461909 TTT
1 TTT
85461912 TTCACTTCCT
Statistics
Matches: 86, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
23 45 0.52
24 41 0.48
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:85461852 original size:47 final size:47
Alignment explanation
Indices: 85461770--85461913 Score: 209
Period size: 47 Copynumber: 3.0 Consensus size: 47
85461760 TGCTTTATCA
* *
85461770 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-C-TTTAATAACTGGGGCATAAGCCCTTTT
* *
85461819 TATAACTGGGGCATAAGCCCTTTAGTAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
*
85461866 GATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
85461913 T
1 T
85461914 CACTTCCTCC
Statistics
Matches: 86, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
47 68 0.79
48 5 0.06
49 13 0.15
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (47 bp):
TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:85461987 original size:20 final size:20
Alignment explanation
Indices: 85461962--85462022 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
85461952 TTATGATTAC
85461962 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
85461982 ATCATGTGCATATAATACAT
1 ATCATGTGCATATCATACAT
*
85462002 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
85462022 A
1 A
85462023 CCATATTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:85463335 original size:27 final size:27
Alignment explanation
Indices: 85463270--85463337 Score: 102
Period size: 27 Copynumber: 2.5 Consensus size: 27
85463260 GGGCATATTC
*
85463270 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
85463297 GTCATTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCCTACAGGGG-TATTACG
*
85463324 GTCACTTTACCCTA
1 GTCATTTTACCCTA
85463338 ATAGGGGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 37 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:85463479 original size:27 final size:27
Alignment explanation
Indices: 85463366--85463629 Score: 257
Period size: 27 Copynumber: 9.8 Consensus size: 27
85463356 TTTCATCCTA
* * *
85463366 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* ** * *
85463393 CAAAGGTA-TTTCATAATTTTTAGAAAGT
1 CAAGGGTATTTTGGTAA-TTTTACAAA-C
* * ** *
85463421 TAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAC
* *
85463448 CAGGGGTATTTT-GTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
** * *
85463474 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
85463501 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
85463528 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
85463555 CAAGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
85463581 CTAGAGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAAC
*
85463609 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
85463630 GTAAATCGAG
Statistics
Matches: 194, Mismatches: 36, Indels: 14
0.80 0.15 0.06
Matches are distributed among these distances:
26 29 0.15
27 144 0.74
28 15 0.08
29 5 0.03
30 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:85463641 original size:27 final size:27
Alignment explanation
Indices: 85463451--85463952 Score: 266
Period size: 27 Copynumber: 18.8 Consensus size: 27
85463441 TGTAAATCAG
*
85463451 GGGTATTTT-GTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAATCGA
* * * *
85463477 GGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCGA
*
85463504 GGGTATTTTGGTAATTTTACAAA-CTA
1 GGGTATTTTGGTAATTTTACAAATCGA
* *
85463530 GGGGTATTTTGGTAATTTTACAAACCAA
1 -GGGTATTTTGGTAATTTTACAAATCGA
*
85463558 GGGTATTTTGGTAATTTTACAAA-CTA
1 GGGTATTTTGGTAATTTTACAAATCGA
* *
85463584 GAGGTATTTTGGTAATTTTACAAACCAA
1 G-GGTATTTTGGTAATTTTACAAATCGA
* **
85463612 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
***** * ** *
85463639 GGGTAAAACAGTAATTCTGTAAATCAA
1 GGGTATTTTGGTAATTTTACAAATCGA
***** * *
85463666 GGGTAAAACAGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
*** * ** *
85463693 GGGTAAAATGGTAATTCTGTAAGTCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
**** * **
85463720 GGGTAAAACGGTAATTCTGTAAATC-A
1 GGGTATTTTGGTAATTTTACAAATCGA
**** * **
85463746 GGGTAAAACGGTAATTATGTAAATCG-
1 GGGTATTTTGGTAATTTTACAAATCGA
*** *
85463772 GGGTAAAATGGTAATTATA-AAATCG-
1 GGGTATTTTGGTAATTTTACAAATCGA
*** * *
85463797 GGAGTAAAATGGTAATTTT-TAAATCGG
1 GG-GTATTTTGGTAATTTTACAAATCGA
* *
85463824 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
* **
85463851 AGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
**
85463878 GGGTATTTCAGT-ATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
* * * *
85463904 GGATATTTGGGTAATTTTATAAACCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
*
85463931 GGGTACTTTGGTAATTTTACAA
1 GGGTATTTTGGTAATTTTACAA
85463953 CTGAGGATAT
Statistics
Matches: 410, Mismatches: 55, Indels: 21
0.84 0.11 0.04
Matches are distributed among these distances:
25 8 0.02
26 112 0.27
27 285 0.70
28 5 0.01
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.35
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCGA
Found at i:85463835 original size:26 final size:27
Alignment explanation
Indices: 85463807--85463973 Score: 146
Period size: 27 Copynumber: 6.3 Consensus size: 27
85463797 GGAGTAAAAT
*
85463807 GGTAATTTT-TAAATCGGGGGTACTTT-
1 GGTAATTTTATAAATCGAGGGTA-TTTC
* * *
85463833 GGTAATTTTACAAGTCGAAGGTATTTC
1 GGTAATTTTATAAATCGAGGGTATTTC
* *
85463860 AGTAATTTTACAAATCGAGGGTATTTC
1 GGTAATTTTATAAATCGAGGGTATTTC
* * * *
85463887 AGT-ATTTTACAAATCGAGGATATTTG
1 GGTAATTTTATAAATCGAGGGTATTTC
*
85463913 GGTAATTTTATAAACCGAGGGTACTTT-
1 GGTAATTTTATAAATCGAGGGTA-TTTC
* * *
85463940 GGTAATTTTACAACT-GAGGATATTTC
1 GGTAATTTTATAAATCGAGGGTATTTC
*
85463966 AGTAATTT
1 GGTAATTT
85463974 GGTAAACTAA
Statistics
Matches: 118, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
25 3 0.03
26 48 0.41
27 64 0.54
28 3 0.03
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
GGTAATTTTATAAATCGAGGGTATTTC
Found at i:85463980 original size:53 final size:54
Alignment explanation
Indices: 85463808--85463973 Score: 198
Period size: 53 Copynumber: 3.1 Consensus size: 54
85463798 GAGTAAAATG
* * *
85463808 GTAATTTT-TAAATCGGGGGTACTTTGGTAATTTTACAAGTCGAAGG-TATTTCA
1 GTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAAATCG-AGGATATTTCA
* * * **
85463861 GTAATTTTACAAATCGAGGGTA-TTTCAGT-ATTTTACAAATCGAGGATATTTGG
1 GTAATTTTATAAACCGAGGGTACTTT-GGTAATTTTACAAATCGAGGATATTTCA
*
85463914 GTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAACT-GAGGATATTTCA
1 GTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAAATCGAGGATATTTCA
85463967 GTAATTT
1 GTAATTT
85463974 GGTAAACTAA
Statistics
Matches: 96, Mismatches: 12, Indels: 10
0.81 0.10 0.08
Matches are distributed among these distances:
52 3 0.03
53 67 0.70
54 26 0.27
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (54 bp):
GTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAAATCGAGGATATTTCA
Found at i:85466790 original size:30 final size:31
Alignment explanation
Indices: 85466750--85466812 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
85466740 CCTTTTCATA
85466750 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
85466781 TTTCA-ATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
85466811 TT
1 TT
85466813 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:85467057 original size:24 final size:24
Alignment explanation
Indices: 85467004--85467146 Score: 186
Period size: 24 Copynumber: 6.0 Consensus size: 24
85466994 TGCTTTATCA
*
85467004 TATAACTGGAGGCCT-AGCCTCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTT
* *
85467029 AATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
85467053 TATAACTGGGGCATAAGCCC--TT
1 TATAACTGGGGCATAAGCCCTTTT
*
85467075 TATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
*
85467099 GATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTT
*
85467122 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
85467146 T
1 T
85467147 CACTTCCTCC
Statistics
Matches: 104, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
22 21 0.20
23 22 0.21
24 49 0.47
25 12 0.12
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
TATAACTGGGGCATAAGCCCTTTT
Found at i:85467084 original size:46 final size:47
Alignment explanation
Indices: 85467004--85467146 Score: 209
Period size: 46 Copynumber: 3.0 Consensus size: 47
85466994 TGCTTTATCA
* *
85467004 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-C-TTTAATAACTGGGGCATAAGCCCTTTT
*
85467053 TATAACTGGGGCATAAGCCCTTT-ATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
*
85467099 GATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
85467146 T
1 T
85467147 CACTTCCTCC
Statistics
Matches: 86, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
46 43 0.50
47 25 0.29
48 5 0.06
49 13 0.15
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (47 bp):
TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:85467220 original size:20 final size:20
Alignment explanation
Indices: 85467195--85467255 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
85467185 TTATGATTAC
85467195 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
85467215 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
85467235 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
85467255 A
1 A
85467256 CCATATTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:85467226 original size:11 final size:11
Alignment explanation
Indices: 85467195--85467250 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
85467185 TTATGATTAC
85467195 ATCATGTGCAT
1 ATCATGTGCAT
*
85467206 ATCA--TACAT
1 ATCATGTGCAT
85467215 ATCATGTGCAT
1 ATCATGTGCAT
*
85467226 ATCA--TACAT
1 ATCATGTGCAT
*
85467235 GTCATGTGCAT
1 ATCATGTGCAT
85467246 ATCAT
1 ATCAT
85467251 ACATACCATA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:85467330 original size:25 final size:25
Alignment explanation
Indices: 85467298--85467345 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
85467288 ATACATAAAC
* * *
85467298 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
85467323 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
85467346 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:85468526 original size:27 final size:27
Alignment explanation
Indices: 85468492--85468556 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
85468482 GGGCATATTC
85468492 GTCATTTTACCATACAGGGG-TATTACG
1 GTCATTTTACCATACAGGGGCT-TTACG
*
85468519 GTCATTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAGGGGCTTTACG
*
85468546 GTCACTTTACC
1 GTCATTTTACC
85468557 TAATAGGGGC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGCTTTACG
Found at i:85468864 original size:27 final size:27
Alignment explanation
Indices: 85468673--85469152 Score: 286
Period size: 27 Copynumber: 17.8 Consensus size: 27
85468663 TGTAAATCAG
*
85468673 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAATCGA
* * * *
85468700 GGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCGA
*
85468727 GGGTATTTTGGTAATTTTACAAA-CTA
1 GGGTATTTTGGTAATTTTACAAATCGA
* *
85468753 GGGGTATTTTGGTAATTTTACAAACCAA
1 -GGGTATTTTGGTAATTTTACAAATCGA
*
85468781 GGGTATTTTGGTAATTTTACAAA-CTA
1 GGGTATTTTGGTAATTTTACAAATCGA
* *
85468807 GAGGTATTTTGGTAATTTTACAAACCAA
1 G-GGTATTTTGGTAATTTTACAAATCGA
* **
85468835 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
***** * ** *
85468862 GGGTAAAACAGTAATTCTGTAAATCAA
1 GGGTATTTTGGTAATTTTACAAATCGA
***** * *
85468889 GGGTAAAACAGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
*** * ** *
85468916 GGGTAAAATGGTAATTCTGTAAGTCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
**** * **
85468943 GGGTAAAACGGTAATTATGTAAATCG-
1 GGGTATTTTGGTAATTTTACAAATCGA
*** * *
85468969 GGGTTAAAATGGTAATTATATAAATCG-
1 GGG-TATTTTGGTAATTTTACAAATCGA
*** ** *
85468996 GGAGTAAAATGGTAATTTTGTAAATCGG
1 GG-GTATTTTGGTAATTTTACAAATCGA
* *
85469024 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
* **
85469051 AGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
**
85469078 GGGTATTTCAGT-ATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
* * * *
85469104 GGATATTTGGGTAATTTTATAAACCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
*
85469131 GGGTACTTTGGTAATTTTACAA
1 GGGTATTTTGGTAATTTTACAA
85469153 CTGAGGATAT
Statistics
Matches: 388, Mismatches: 57, Indels: 16
0.84 0.12 0.03
Matches are distributed among these distances:
26 31 0.08
27 349 0.90
28 8 0.02
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.35
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCGA
Found at i:85468877 original size:54 final size:54
Alignment explanation
Indices: 85468645--85468866 Score: 277
Period size: 54 Copynumber: 4.1 Consensus size: 54
85468635 TAGAAAGTTA
* * ** * * *
85468645 AGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATCG
* *
85468699 AGGGTATTTCGGTAATTTCACAAACCAAGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATCG
* *
85468752 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATCG
* * **
85468806 AGAGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCG
1 AG-GGTATTTCGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATCG
85468861 AGGGTA
1 AGGGTA
85468867 AAACAGTAAT
Statistics
Matches: 150, Mismatches: 15, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
53 2 0.01
54 145 0.97
55 3 0.02
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATCG
Found at i:85469180 original size:53 final size:54
Alignment explanation
Indices: 85469007--85469173 Score: 198
Period size: 53 Copynumber: 3.1 Consensus size: 54
85468997 GAGTAAAATG
* * * *
85469007 GTAATTTTGTAAATCGGGGGTACTTTGGTAATTTTACAAGTCGAAGG-TATTTCA
1 GTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAAATCG-AGGATATTTCA
* * * **
85469061 GTAATTTTACAAATCGAGGGTA-TTTCAGT-ATTTTACAAATCGAGGATATTTGG
1 GTAATTTTATAAACCGAGGGTACTTT-GGTAATTTTACAAATCGAGGATATTTCA
*
85469114 GTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAACT-GAGGATATTTCA
1 GTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAAATCGAGGATATTTCA
85469167 GTAATTT
1 GTAATTT
85469174 GGTAAACTAA
Statistics
Matches: 96, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
52 3 0.03
53 59 0.61
54 34 0.35
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (54 bp):
GTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAAATCGAGGATATTTCA
Found at i:85473094 original size:6 final size:6
Alignment explanation
Indices: 85473076--85473169 Score: 86
Period size: 6 Copynumber: 15.3 Consensus size: 6
85473066 AAGAAACATT
*
85473076 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATTAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
85473123 GTGACAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 AT--CAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
85473170 GTGAGTGCAA
Statistics
Matches: 72, Mismatches: 8, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
5 4 0.06
6 60 0.83
7 6 0.08
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:85473136 original size:25 final size:25
Alignment explanation
Indices: 85473085--85473169 Score: 111
Period size: 25 Copynumber: 3.4 Consensus size: 25
85473075 TATCAGAACT
85473085 AGAATCAGAATCA-G-AATCAGAATC
1 AGAATCAGAATCAGGTAA-CAGAATC
* *
85473109 AGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGGTAACAGAATC
*
85473134 AGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGGTAACAGAATC
*
85473159 AAAATCAGAAT
1 AGAATCAGAAT
85473170 GTGAGTGCAA
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
24 12 0.23
25 39 0.75
26 1 0.02
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGGTAACAGAATC
Found at i:85473601 original size:27 final size:28
Alignment explanation
Indices: 85473571--85473848 Score: 290
Period size: 27 Copynumber: 10.3 Consensus size: 28
85473561 GGGGTAAAAT
* *
85473571 GGTAATTT-TACCCCACAAGGGTATCTC
1 GGTAATTTCTACCCTACAAGGGTATTTC
*
85473598 GGTAA-TTCTACCTTAC-AGGAGTATTTC
1 GGTAATTTCTACCCTACAAGG-GTATTTC
* * * *
85473625 AGTAA-ATCTACCCTATAGGGGTATTTC
1 GGTAATTTCTACCCTACAAGGGTATTTC
*
85473652 GGT-ATTTCTAGCCTACAAGGGTATTTC
1 GGTAATTTCTACCCTACAAGGGTATTTC
* *
85473679 GGTAA-TTCTACCCTACAGGGGTATTTT
1 GGTAATTTCTACCCTACAAGGGTATTTC
* *
85473706 AGTAA-TTCTACCCTACAGGGGTATTTC
1 GGTAATTTCTACCCTACAAGGGTATTTC
*
85473733 GGT-ATTTCTACCCTACAGGGGTATTTC
1 GGTAATTTCTACCCTACAAGGGTATTTC
* *
85473760 -GAAATTTCTACCCTACGAGGGTATTTC
1 GGTAATTTCTACCCTACAAGGGTATTTC
* * *
85473787 AGT-ATTTCTACTCTACAAGGATATTTC
1 GGTAATTTCTACCCTACAAGGGTATTTC
*
85473814 GGT-ATTTCTACCCTACAAGGGTATTTT
1 GGTAATTTCTACCCTACAAGGGTATTTC
*
85473841 GATAATTT
1 GGTAATTT
85473849 TATAAATCGA
Statistics
Matches: 211, Mismatches: 31, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
26 8 0.04
27 195 0.92
28 8 0.04
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (28 bp):
GGTAATTTCTACCCTACAAGGGTATTTC
Found at i:85473696 original size:81 final size:80
Alignment explanation
Indices: 85473575--85473839 Score: 363
Period size: 81 Copynumber: 3.3 Consensus size: 80
85473565 TAAAATGGTA
* * * *
85473575 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCTTACAGGAGTATTTCAGTAAATCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGG-GTATTTCAGTAATTCTACCCT
*
85473639 ATAGGGGTATTTCGGT
65 ACAGGGGTATTTCGGT
* *
85473655 ATTTCTAGCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACA-GGGTATTTCAGTAATTCTACCCT
85473720 ACAGGGGTATTTCGGT
65 ACAGGGGTATTTCGGT
* * * *
85473736 ATTTCTACCCTACAGGGGTATTTC-GAAATTTCTACCCTACGAGGGTATTTCAGTATTTCTACTC
1 ATTTCTACCCTACAAGGGTATTTCGGTAA-TTCTACCCTAC-AGGGTATTTCAGTAATTCTACCC
* *
85473800 TACAAGGATATTTCGGT
64 TACAGGGGTATTTCGGT
85473817 ATTTCTACCCTACAAGGGTATTT
1 ATTTCTACCCTACAAGGGTATTT
85473840 TGATAATTTT
Statistics
Matches: 165, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
80 7 0.04
81 155 0.94
82 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (80 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGTATTTCAGTAATTCTACCCTA
CAGGGGTATTTCGGT
Found at i:85473861 original size:27 final size:26
Alignment explanation
Indices: 85473828--85474226 Score: 332
Period size: 27 Copynumber: 14.8 Consensus size: 26
85473818 TTTCTACCCT
* *
85473828 ACAAGGGTATTTTGATAATTTTATAA
1 ACAAGGGTATTTTGGTAATTTTACAA
* ***
85473854 ATCGAGGGTAAAATGGTAATTCTGTA-AA
1 A-CAAGGGTATTTTGGTAATT-T-TACAA
* * *
85473882 TCAAGCGTACTTTGGTAATTTTACAA
1 ACAAGGGTATTTTGGTAATTTTACAA
* * *** *
85473908 GTCGAGGGTATTTCAATAATTTTACAGG
1 -ACAAGGGTATTTTGGTAATTTTACA-A
* * ** *
85473936 TCGAGGGTATTTCAGTAATTTCACAA
1 ACAAGGGTATTTTGGTAATTTTACAA
* *
85473962 ATTAGGGGTATTTTGGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* *
85473989 ACTAGGGGTATTTTGATAATTTTACAA
1 AC-AAGGGTATTTTGGTAATTTTACAA
*
85474016 ACCAGGGTTATTTTGGTAATTTTACAA
1 ACAAGGG-TATTTTGGTAATTTTACAA
* *
85474043 ACTAGGGGTATTTTGGTAATTTTATAA
1 AC-AAGGGTATTTTGGTAATTTTACAA
*
85474070 ACCAAGGGTATTTTAGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* **
85474097 ACCAGGGGTATTTTGGTAATTTTGTAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
85474124 ACCAAGGGTATTTTGGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* * *
85474151 ACCAGGGGTATTTTGGTGATTTTATAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
*
85474178 ACCAAGGGTATTTTAGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
*
85474205 ACCAGGGGTATTTTGGTAATTT
1 A-CAAGGGTATTTTGGTAATTT
85474227 GGTAAACTAA
Statistics
Matches: 307, Mismatches: 55, Indels: 21
0.80 0.14 0.05
Matches are distributed among these distances:
25 2 0.01
26 7 0.02
27 289 0.94
28 7 0.02
29 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (26 bp):
ACAAGGGTATTTTGGTAATTTTACAA
Found at i:85474233 original size:27 final size:27
Alignment explanation
Indices: 85473940--85474226 Score: 403
Period size: 27 Copynumber: 10.6 Consensus size: 27
85473930 TACAGGTCGA
** * **
85473940 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
85473967 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
85473994 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
85474021 GGTTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
85474048 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
85474075 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
85474102 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
85474129 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
85474156 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
85474183 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
85474210 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
85474227 GGTAAACTAA
Statistics
Matches: 229, Mismatches: 31, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 229 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:85476200 original size:31 final size:31
Alignment explanation
Indices: 85476172--85476275 Score: 127
Period size: 31 Copynumber: 3.4 Consensus size: 31
85476162 TATCAGAACT
* * *
85476172 AGAATTAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
85476203 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
* * * *
85476234 AAAATCAAAATCAGTATCAGGTAACAGAAAC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
85476265 AAAATCAGAAT
1 AGAATCAGAAT
85476276 GTGAATGCAA
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 65 1.00
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:85476205 original size:6 final size:6
Alignment explanation
Indices: 85476196--85476275 Score: 56
Period size: 6 Copynumber: 13.0 Consensus size: 6
85476186 AATTAGGTGA
* * *
85476196 CAGAAT CAGAAT CAGAAT CAGTAT CAGGTAA- CAGAAT CAAAAT CAAAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT
* * *
85476245 CAGTAT CAGGTAA- CAGAAA CAAAAT CAGAAT
1 CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT
85476276 GTGAATGCAA
Statistics
Matches: 59, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
5 4 0.07
6 47 0.80
7 6 0.10
8 2 0.03
ACGTcount: A:0.51, C:0.16, G:0.15, T:0.17
Consensus pattern (6 bp):
CAGAAT
Found at i:85476904 original size:27 final size:27
Alignment explanation
Indices: 85476675--85476951 Score: 347
Period size: 27 Copynumber: 10.3 Consensus size: 27
85476665 GGGGTAAAAT
* * * * *
85476675 GGTAATTTTACCCCATAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
85476702 CGTAATTCTACCCTATAGGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
85476729 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
85476756 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
85476783 GGTAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
85476810 AGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
85476837 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
85476864 AGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
85476891 GGTACTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
85476918 GGCATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
85476945 GGTAATT
1 GGTAATT
85476952 TTGTAAATCG
Statistics
Matches: 219, Mismatches: 31, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 219 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:85477337 original size:27 final size:27
Alignment explanation
Indices: 85476996--85477330 Score: 386
Period size: 27 Copynumber: 12.4 Consensus size: 27
85476986 TCAAGCATAC
**
85476996 TTTGGTAATTTTACAAGTC-GAGGGTAT
1 TTTGGTAATTTTACAAACCAG-GGGTAT
*** **
85477023 TTCAATAATTTTACAGGCC-GAGGGTAT
1 TTTGGTAATTTTACAAACCAG-GGGTAT
* * **
85477050 TTTAGTAATTTCACAAATTAGGGGTAT
1 TTTGGTAATTTTACAAACCAGGGGTAT
*
85477077 TTTGGTAATTTTACAAACTAGGGGTAT
1 TTTGGTAATTTTACAAACCAGGGGTAT
* *
85477104 TTTGATAATTTTACAAACTAGGGGTAT
1 TTTGGTAATTTTACAAACCAGGGGTAT
* *
85477131 TTTGGTAATTTTACAAACTAAGGGTAT
1 TTTGGTAATTTTACAAACCAGGGGTAT
* *
85477158 TTTGGTAATTTTATAAACCAAGGGTAT
1 TTTGGTAATTTTACAAACCAGGGGTAT
* *
85477185 TTTAGTAATTTTACAAACCATGGGTAT
1 TTTGGTAATTTTACAAACCAGGGGTAT
** * *
85477212 TTTGGTAATTTTGTAAACTAAGGGTAT
1 TTTGGTAATTTTACAAACCAGGGGTAT
85477239 TTTGGTAATTTTACAAACCAGGGGTAT
1 TTTGGTAATTTTACAAACCAGGGGTAT
* * *
85477266 TTTGGTGATTTTATAAACCAAGGGTAT
1 TTTGGTAATTTTACAAACCAGGGGTAT
*
85477293 TTTAGTAATTTTACAAACCAGGGGTAT
1 TTTGGTAATTTTACAAACCAGGGGTAT
85477320 TTTGGTAATTT
1 TTTGGTAATTT
85477331 GGTAAACTAA
Statistics
Matches: 267, Mismatches: 40, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
27 266 1.00
28 1 0.00
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
TTTGGTAATTTTACAAACCAGGGGTAT
Found at i:85478758 original size:23 final size:23
Alignment explanation
Indices: 85478732--85478776 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
85478722 TGGCACTCTT
85478732 ATGCAAGTAACAATGGCACTTCG
1 ATGCAAGTAACAATGGCACTTCG
* * * *
85478755 ATGCTAGTGATAGTGGCACTTC
1 ATGCAAGTAACAATGGCACTTC
85478777 AGTGCAAATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (23 bp):
ATGCAAGTAACAATGGCACTTCG
Found at i:85483011 original size:151 final size:150
Alignment explanation
Indices: 85482820--85483115 Score: 574
Period size: 151 Copynumber: 2.0 Consensus size: 150
85482810 TCCATCACAC
85482820 CATGACTCAAAAGAGTCTACATATCCCAAGTAAGTGTAGCATAAAGCTAACACTCTCCAACACTC
1 CATGACTCAAAAGAGTCTACATATCCCAAGTAAGTGTAGCATAAAGCTAACACTCTCCAACACTC
85482885 TAACATATCCCATGAAGCAATGCTTTACATTCCCTTATCCCTCCACATGTCCCAATAACAAAACA
66 TAACATATCCCATGAAGCAATGCTTTACATTCCCTTATCCCTCCACATGTCCCAATAA-AAAACA
85482950 TATAAATAAGTACTCATATGA
130 TATAAATAAGTACTCATATGA
85482971 CATGACTCAAAAGAGTCTACATATCCCAAGTAAGTGTAGCATAAAGCTAACACTCTCCAACACTC
1 CATGACTCAAAAGAGTCTACATATCCCAAGTAAGTGTAGCATAAAGCTAACACTCTCCAACACTC
*
85483036 TAACATGTCCCATGAAGCAATGCTTTACATTCCCTTATCCCTCCACATGTCCCAATAAAAAACAT
66 TAACATATCCCATGAAGCAATGCTTTACATTCCCTTATCCCTCCACATGTCCCAATAAAAAACAT
85483101 ATAAATAAGTACTCA
131 ATAAATAAGTACTCA
85483116 AATCATATGG
Statistics
Matches: 144, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
150 22 0.15
151 122 0.85
ACGTcount: A:0.38, C:0.27, G:0.09, T:0.25
Consensus pattern (150 bp):
CATGACTCAAAAGAGTCTACATATCCCAAGTAAGTGTAGCATAAAGCTAACACTCTCCAACACTC
TAACATATCCCATGAAGCAATGCTTTACATTCCCTTATCCCTCCACATGTCCCAATAAAAAACAT
ATAAATAAGTACTCATATGA
Found at i:85489143 original size:41 final size:40
Alignment explanation
Indices: 85489048--85489279 Score: 272
Period size: 40 Copynumber: 5.8 Consensus size: 40
85489038 CGGATGATAA
* * **
85489048 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTATA-T
* *
85489088 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
85489128 CCCGGGCTAAGTCCCGAAGGCCTTTGTGCAAGTTACTATAT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
85489169 CCGGGC-ACGTCCCGAAGGCATTTGTGCGAATTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
85489208 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
85489248 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
85489280 ATGTGACACC
Statistics
Matches: 164, Mismatches: 24, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
39 34 0.21
40 91 0.55
41 39 0.24
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:85491724 original size:49 final size:49
Alignment explanation
Indices: 85491592--85492019 Score: 671
Period size: 49 Copynumber: 8.7 Consensus size: 49
85491582 ATCAAGATTC
*
85491592 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
1 GTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
85491641 GTGAAAATGTA--TATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
1 GTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
*
85491688 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGCGATGAAT
1 GTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
*
85491737 GTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
* *
85491786 GTGAAAATGTATATGTATATGTGATAAGGCCTAATGGCCGATGCGATCAAT
1 GTGAAAATG--TATGTATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
* *
85491837 GTGAAAGTGTATGTATATGCGATGAGGCCTAATGGCCGATGCGATGAAT
1 GTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
* * * *
85491886 GTGAAAGTGTATGTATATGCGATGAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
* * * *
85491935 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
* *
85491984 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
1 GTGAAAATGTATGTATATGTGATGAGGCCTAATGGC
85492020 TAATGTAAAA
Statistics
Matches: 361, Mismatches: 14, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 47 0.13
49 269 0.75
51 45 0.12
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.29
Consensus pattern (49 bp):
GTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
Found at i:85491866 original size:149 final size:148
Alignment explanation
Indices: 85491592--85492019 Score: 702
Period size: 149 Copynumber: 2.9 Consensus size: 148
85491582 ATCAAGATTC
* *
85491592 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGATGAATGTGAAAATG-TA--TA
1 GTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTTATGTA
* *
85491654 TATGTGATGAGGCCTAATGGCCGATGCGATGAATGTGAAAATGTATGTATATGTGATAAGGCCTA
66 TATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTA
85491719 ATGGCCGATGCGATGAAT
131 ATGGCCGATGCGATGAAT
85491737 GTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATGT
1 GTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGT-TATGT
* * *
85491802 ATATGTGATAAGGCCTAATGGCCGATGCGATCAATGTGAAAGTGTATGTATATGCGATGAGGCCT
65 ATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCT
85491867 AATGGCCGATGCGATGAAT
130 AATGGCCGATGCGATGAAT
* * * *
85491886 GTGAAAGTGTATGTATATGCGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG-TATGTA
1 GTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTTATGTA
* *
85491950 TATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTA
66 TATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTA
85492015 ATGGC
131 ATGGC
85492020 TAATGTAAAA
Statistics
Matches: 263, Mismatches: 16, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
145 56 0.21
147 73 0.28
149 134 0.51
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.29
Consensus pattern (148 bp):
GTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTTATGTA
TATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTA
ATGGCCGATGCGATGAAT
Found at i:85492175 original size:37 final size:37
Alignment explanation
Indices: 85492134--85492204 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
85492124 GGTGAGACCC
85492134 GATGACTACGTGTGGAGATTATGACCGGGTAAGATCT
1 GATGACTACGTGTGGAGATTATGACCGGGTAAGATCT
*
85492171 GATGACTACGTGTGGAGATTATGTCCGGGTAAGA
1 GATGACTACGTGTGGAGATTATGACCGGGTAAGA
85492205 CTTCTTTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.27, C:0.13, G:0.34, T:0.27
Consensus pattern (37 bp):
GATGACTACGTGTGGAGATTATGACCGGGTAAGATCT
Found at i:85494110 original size:40 final size:40
Alignment explanation
Indices: 85494064--85494364 Score: 281
Period size: 40 Copynumber: 7.5 Consensus size: 40
85494054 TGAATGATAC
**
85494064 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG-ATATAT
* * * *
85494104 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AG-TGATATAT
* * * *
85494144 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTCCCGAAGAGC-ATTCGTGCTAGT-GATATAT
* *
85494184 CC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * * *
85494223 CCGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * * * *
85494263 CCGGACTAAGTTCCGAGGAGTATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * **
85494303 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGCAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
*
85494343 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
85494365 ATCATGCTGG
Statistics
Matches: 231, Mismatches: 22, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
39 24 0.10
40 201 0.87
41 6 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
Found at i:85494639 original size:29 final size:29
Alignment explanation
Indices: 85494607--85494797 Score: 319
Period size: 29 Copynumber: 6.6 Consensus size: 29
85494597 CCGTTAACCG
85494607 GGCACTATGTGTGCGAGATCAGTAATCGA
1 GGCACTATGTGTGCGAGATCAGTAATCGA
* *
85494636 GGCACTATGCGTGCGAGATTAGTAATCGA
1 GGCACTATGTGTGCGAGATCAGTAATCGA
*
85494665 GGCACTATGTGTGCGAGATCAGTAATCAA
1 GGCACTATGTGTGCGAGATCAGTAATCGA
*
85494694 GGCACTATGTGTGCGAGATCAGTAATCAA
1 GGCACTATGTGTGCGAGATCAGTAATCGA
*
85494723 GGCACTATGTGTGCGAGATCAGTAATTGA
1 GGCACTATGTGTGCGAGATCAGTAATCGA
*
85494752 GGCACTATGTGTGCGAGATCAGTAATTGA
1 GGCACTATGTGTGCGAGATCAGTAATCGA
*
85494781 GGCACTGTGTGTGCGAG
1 GGCACTATGTGTGCGAG
85494798 TTTTTCAACA
Statistics
Matches: 154, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 154 1.00
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.25
Consensus pattern (29 bp):
GGCACTATGTGTGCGAGATCAGTAATCGA
Found at i:85498344 original size:49 final size:49
Alignment explanation
Indices: 85498272--85498701 Score: 671
Period size: 49 Copynumber: 8.7 Consensus size: 49
85498262 ATCAAGATTC
*
85498272 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
1 GTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
*
85498321 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
1 GTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
*
85498370 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGCGATGAAT
1 GTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
*
85498419 GTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
* *
85498468 GTGAAAATGTATATGTATATGTGATAAGGCCTAATGGCCGATGCGATCAAT
1 GTGAAAATG--TATGTATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
* *
85498519 GTGAAAGTGTATGTATATGCGATGAGGCCTAATGGCCGATGCGATGAAT
1 GTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
* * * *
85498568 GTGAAAGTGTATGTATATGCGATGAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
* * * * *
85498617 GTGGAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
* *
85498666 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
1 GTGAAAATGTATGTATATGTGATGAGGCCTAATGGC
85498702 TAATGTAAAA
Statistics
Matches: 362, Mismatches: 17, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
49 317 0.88
51 45 0.12
ACGTcount: A:0.30, C:0.10, G:0.30, T:0.29
Consensus pattern (49 bp):
GTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
Found at i:85498510 original size:198 final size:198
Alignment explanation
Indices: 85498272--85498701 Score: 697
Period size: 198 Copynumber: 2.2 Consensus size: 198
85498262 ATCAAGATTC
* *
85498272 GTGAAAATGTATA--TATATGTGATGAGGCCTAATGGCCGATGCGATGAATGTGAAAATGTATAT
1 GTGAAAATGTATATGTATATGTGATAAGGCCTAATGGCCGATGCGATCAATGTGAAAATGTATAT
* *
85498335 ATATGTGATGAGGCCTAATGGCCGATGCGATGAATGTGAAAATGTATGTATATGTGATAAGGCCT
66 ATATGCGATGAGGCCTAATGGCCGATGCGATGAATGTGAAAATGTATGTATATGCGATAAGGCCT
*
85498400 AATGGCCGATGCGATGAATGTGAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATG
131 AATGGCCGATGCGATGAATGTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATG
85498465 AAT
196 AAT
* *
85498468 GTGAAAATGTATATGTATATGTGATAAGGCCTAATGGCCGATGCGATCAATGTGAAAGTGTATGT
1 GTGAAAATGTATATGTATATGTGATAAGGCCTAATGGCCGATGCGATCAATGTGAAAATGTATAT
* *
85498533 ATATGCGATGAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTATGTATATGCGATGAGGCCT
66 ATATGCGATGAGGCCTAATGGCCGATGCGATGAATGTGAAAATGTATGTATATGCGATAAGGCCT
* * * * *
85498598 AATGGCCGATGTGGTGAATGTGGAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTG
131 AATGGCCGATGCGATGAATGTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATG
85498663 AAT
196 AAT
*
85498666 GTG-AAA-GTGTATGTATATGTGATAAGGCCTAATGGC
1 GTGAAAATGTATATGTATATGTGATAAGGCCTAATGGC
85498702 TAATGTAAAA
Statistics
Matches: 217, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
196 42 0.19
197 3 0.01
198 172 0.79
ACGTcount: A:0.30, C:0.10, G:0.30, T:0.29
Consensus pattern (198 bp):
GTGAAAATGTATATGTATATGTGATAAGGCCTAATGGCCGATGCGATCAATGTGAAAATGTATAT
ATATGCGATGAGGCCTAATGGCCGATGCGATGAATGTGAAAATGTATGTATATGCGATAAGGCCT
AATGGCCGATGCGATGAATGTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATG
AAT
Found at i:85498855 original size:37 final size:37
Alignment explanation
Indices: 85498814--85498884 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
85498804 CGGGTGAGAC
85498814 CCGATGACTACGTGTGGAGATTATGACCGGGTAACAT
1 CCGATGACTACGTGTGGAGATTATGACCGGGTAACAT
*
85498851 CCGATGACTACGTGTGGAGATTATGTCCGGGTAA
1 CCGATGACTACGTGTGGAGATTATGACCGGGTAA
85498885 GACTTCTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.25
Consensus pattern (37 bp):
CCGATGACTACGTGTGGAGATTATGACCGGGTAACAT
Found at i:85510705 original size:13 final size:13
Alignment explanation
Indices: 85510687--85510711 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85510677 TAAAATTGGT
85510687 TTCAAATTTGGAG
1 TTCAAATTTGGAG
85510700 TTCAAATTTGGA
1 TTCAAATTTGGA
85510712 AGATATGATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (13 bp):
TTCAAATTTGGAG
Found at i:85512350 original size:48 final size:48
Alignment explanation
Indices: 85512298--85512389 Score: 121
Period size: 48 Copynumber: 1.9 Consensus size: 48
85512288 TGGCATCGAC
* * * * *
85512298 ATGTGATCCCGTATAAGATCATGTCTGGGATATGGTATCGGCATCATT
1 ATGTGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCATCATT
* *
85512346 ATGTGAGGCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
1 ATGTGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCAT
85512390 GAGGCATCGT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 37 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.28
Consensus pattern (48 bp):
ATGTGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCATCATT
Found at i:85514785 original size:23 final size:23
Alignment explanation
Indices: 85514755--85514810 Score: 112
Period size: 23 Copynumber: 2.4 Consensus size: 23
85514745 GATGAAGTGC
85514755 TGATTTGATTAAATCAGTTGATT
1 TGATTTGATTAAATCAGTTGATT
85514778 TGATTTGATTAAATCAGTTGATT
1 TGATTTGATTAAATCAGTTGATT
85514801 TGATTTGATT
1 TGATTTGATT
85514811 TAGACCTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.29, C:0.04, G:0.18, T:0.50
Consensus pattern (23 bp):
TGATTTGATTAAATCAGTTGATT
Found at i:85516637 original size:65 final size:64
Alignment explanation
Indices: 85516584--85516738 Score: 229
Period size: 65 Copynumber: 2.4 Consensus size: 64
85516574 GGTTATGTAC
* *
85516584 ACTTTGTGTGTACACTTGGAAAGGTTAGGTATACTTTTTGTGTACCATATGAAAAGGAAAGATAT
1 ACTTTGTGTGTACACTTGGAAAGGTTAGGTATACTTTGTGTGTACCATATGAAAAGGTAAG-TAT
* * *
85516649 ACTTTGTGTGTACACTTGAAAAGTTTAGGTATACTTTGTGTGTACCATATGAAAAGGATAGGTAT
1 ACTTTGTGTGTACACTTGGAAAGGTTAGGTATACTTTGTGTGTACCATATGAAAAGG-TAAGTAT
*
85516714 ACTTTGTGTCTACCACTTGGAAAGG
1 ACTTTGTGTGTA-CACTTGGAAAGG
85516739 AATGTACACC
Statistics
Matches: 80, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
65 68 0.85
66 12 0.15
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.35
Consensus pattern (64 bp):
ACTTTGTGTGTACACTTGGAAAGGTTAGGTATACTTTGTGTGTACCATATGAAAAGGTAAGTAT
Found at i:85516739 original size:33 final size:33
Alignment explanation
Indices: 85516560--85516739 Score: 188
Period size: 33 Copynumber: 5.5 Consensus size: 33
85516550 TATCCAAATG
* * * * *
85516560 GTACAACTTGAAATGGTTATGTACACTTTGTGT
1 GTACCACTTGAAAAGGATAGGTATACTTTGTGT
* * *
85516593 GTA-CACTTGGAAAGGTTAGGTATACTTTTTGT
1 GTACCACTTGAAAAGGATAGGTATACTTTGTGT
* *
85516625 GTACCA-TATGAAAAGGAAAGATATACTTTGTGT
1 GTACCACT-TGAAAAGGATAGGTATACTTTGTGT
**
85516658 GTA-CACTTGAAAAGTTTAGGTATACTTTGTGT
1 GTACCACTTGAAAAGGATAGGTATACTTTGTGT
85516690 GTACCA-TATGAAAAGGATAGGTATACTTTGTGT
1 GTACCACT-TGAAAAGGATAGGTATACTTTGTGT
* *
85516723 CTACCACTTGGAAAGGA
1 GTACCACTTGAAAAGGA
85516740 ATGTACACCT
Statistics
Matches: 122, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
32 54 0.44
33 67 0.55
34 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (33 bp):
GTACCACTTGAAAAGGATAGGTATACTTTGTGT
Found at i:85516757 original size:65 final size:65
Alignment explanation
Indices: 85516623--85516758 Score: 148
Period size: 65 Copynumber: 2.1 Consensus size: 65
85516613 TATACTTTTT
* ** * * ***
85516623 GTGTACCATATGAAAAGGAAAGATATACTTTGTGTGTACACTTGAAAAGTTTAGGTATACTTTGT
1 GTGTACCATATGAAAAGGAAAGATATACTTTGTGTCTACACTTGAAAAGTGAAGGTACACCTCAA
* * * *
85516688 GTGTACCATATGAAAAGGATAGGTATACTTTGTGTCTACCACTTGGAAAG-GAATGTACACCTCA
1 GTGTACCATATGAAAAGGAAAGATATACTTTGTGTCTA-CACTTGAAAAGTGAAGGTACACCTCA
85516752 A
65 A
85516753 GTGTAC
1 GTGTAC
85516759 AACTGGAAAG
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
65 48 0.83
66 10 0.17
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.32
Consensus pattern (65 bp):
GTGTACCATATGAAAAGGAAAGATATACTTTGTGTCTACACTTGAAAAGTGAAGGTACACCTCAA
Found at i:85519859 original size:28 final size:28
Alignment explanation
Indices: 85519819--85519883 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
85519809 ATGTACTAGA
*
85519819 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
85519847 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
85519875 ATACCCCTA
1 ATACCCCTA
85519884 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:85520047 original size:27 final size:27
Alignment explanation
Indices: 85519989--85520078 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
85519979 AGGAAGCGTC
85519989 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
85520017 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
85520044 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
85520073 CTGGTG
1 CTGGTG
85520079 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:85520097 original size:55 final size:56
Alignment explanation
Indices: 85519989--85520103 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
85519979 AGGAAGCGTC
* *
85519989 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
85520044 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
85520100 CTGG
1 CTGG
85520104 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:85521185 original size:11 final size:10
Alignment explanation
Indices: 85521157--85521190 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
85521147 AGCCTGTAAG
85521157 TATTCTGAAT
1 TATTCTGAAT
*
85521167 TTTTCTGAAT
1 TATTCTGAAT
85521177 ATATTCTGAAT
1 -TATTCTGAAT
85521188 TAT
1 TAT
85521191 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:85527418 original size:8 final size:8
Alignment explanation
Indices: 85527405--85527436 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
85527395 CTAGATCGGC
85527405 AAAAGCCG
1 AAAAGCCG
85527413 AAAAGCCG
1 AAAAGCCG
*
85527421 AAATGCCG
1 AAAAGCCG
85527429 AAAAGCCG
1 AAAAGCCG
85527437 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:85527724 original size:28 final size:28
Alignment explanation
Indices: 85527683--85527747 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
85527673 ATGTACTAGA
*
85527683 ATACCCCTACGTATGCAAAATTACCATT
1 ATACCCCTACGTATGCAAAATGACCATT
* *
85527711 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTACGTATGCAAAATGACCATT
85527739 ATACCCCTA
1 ATACCCCTA
85527748 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTACGTATGCAAAATGACCATT
Found at i:85527896 original size:28 final size:27
Alignment explanation
Indices: 85527863--85527934 Score: 99
Period size: 27 Copynumber: 2.6 Consensus size: 27
85527853 CTGGTGGCTA
*
85527863 TGCCACAAATTATCTGTTCTAGTGGCCC
1 TGCCACAAA-TATCTGTTCTAGTGGCAC
* *
85527891 TGCCACATATATCTGTTCTGGTGGCAC
1 TGCCACAAATATCTGTTCTAGTGGCAC
85527918 TGCCACAAAATATCTGT
1 TGCCAC-AAATATCTGT
85527935 ATCTGGTGAC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (27 bp):
TGCCACAAATATCTGTTCTAGTGGCAC
Found at i:85527914 original size:27 final size:27
Alignment explanation
Indices: 85527853--85527942 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
85527843 AGGAAGCGTC
85527853 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* * *
85527881 CTAGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
85527908 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
85527937 CTGGTG
1 CTGGTG
85527943 ACTCTGTCAC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 22 0.42
28 24 0.45
29 7 0.13
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:85527953 original size:29 final size:28
Alignment explanation
Indices: 85527863--85527953 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
85527853 CTGGTGGCTA
* * * *
85527863 TGCCACAAATTATCTGTTCTAGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
85527891 TGCCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
85527918 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
85527947 TGTCACA
1 TGCCACA
85527954 TTTTCTGTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
27 23 0.43
28 15 0.28
29 15 0.28
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:85527961 original size:55 final size:56
Alignment explanation
Indices: 85527853--85527967 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
85527843 AGGAAGCGTC
* *
85527853 CTGGTGGCTATGCCACAAATTATCTGTTCTAGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTAGTGACCCTGCCACATATATCTGTAT
* * * *
85527908 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTAGTGACCCTGCCACATATATCTGTAT
85527964 CTGG
1 CTGG
85527968 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTAGTGACCCTGCCACATATATCTGTAT
Found at i:85531119 original size:25 final size:23
Alignment explanation
Indices: 85531080--85531127 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 23
85531070 GTAAATCAAA
85531080 AAAATATCTCTAG-AAATTTTCT
1 AAAATATCTCTAGAAAATTTTCT
85531102 AAAATAATCTCTTCAGAAAATTTTCT
1 AAAAT-ATCTC-T-AGAAAATTTTCT
85531128 CTCTAAAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 5 0.23
23 5 0.23
24 1 0.05
25 2 0.09
26 9 0.41
ACGTcount: A:0.42, C:0.15, G:0.04, T:0.40
Consensus pattern (23 bp):
AAAATATCTCTAGAAAATTTTCT
Found at i:85531241 original size:17 final size:17
Alignment explanation
Indices: 85531219--85531253 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
85531209 ACCATGATTA
85531219 AACTTAATCATTTTAAT
1 AACTTAATCATTTTAAT
85531236 AACTTAATCATTTTAAT
1 AACTTAATCATTTTAAT
85531253 A
1 A
85531254 TTAAATTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (17 bp):
AACTTAATCATTTTAAT
Found at i:85531355 original size:23 final size:22
Alignment explanation
Indices: 85531329--85531383 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
85531319 TTTAATATTA
*
85531329 AATTAATAATATACTATTAAGAT
1 AATTAATAATATAATATTAA-AT
* *
85531352 AATTATTAATTTAATATTAAAT
1 AATTAATAATATAATATTAAAT
*
85531374 TATTAA-AATA
1 AATTAATAATA
85531384 ATATTATTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 3 0.12
22 6 0.23
23 17 0.65
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (22 bp):
AATTAATAATATAATATTAAAT
Found at i:85531359 original size:31 final size:30
Alignment explanation
Indices: 85531321--85531389 Score: 84
Period size: 31 Copynumber: 2.3 Consensus size: 30
85531311 ATAATCACTT
* *
85531321 TAATATTAAATTAATAATATACTATTAAGA
1 TAATATTAAATTAATAATAAACTATTAAAA
* * *
85531351 TAATTATTAATTTAATATTAAATTATTAAAA
1 TAA-TATTAAATTAATAATAAACTATTAAAA
85531382 TAATATTA
1 TAATATTA
85531390 TTTTTGGAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
30 8 0.24
31 25 0.76
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (30 bp):
TAATATTAAATTAATAATAAACTATTAAAA
Found at i:85531536 original size:18 final size:18
Alignment explanation
Indices: 85531513--85531552 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
85531503 GTCACAGGAC
85531513 TTATACAGAGGTGCATTA
1 TTATACAGAGGTGCATTA
85531531 TTATACAGAGGTGCATTA
1 TTATACAGAGGTGCATTA
85531549 TTAT
1 TTAT
85531553 GCACTAATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.38
Consensus pattern (18 bp):
TTATACAGAGGTGCATTA
Found at i:85531639 original size:25 final size:25
Alignment explanation
Indices: 85531606--85531788 Score: 216
Period size: 25 Copynumber: 7.4 Consensus size: 25
85531596 AAATGTGCTA
*
85531606 ATCAGAGAGCACTGACGTGCTAAAT
1 ATCAGAGAGCACTGGCGTGCTAAAT
* *
85531631 ATCATAGAGCACTGGCGTGCT-AGT
1 ATCAGAGAGCACTGGCGTGCTAAAT
85531655 AATCAGAGAGCACTGGCGTGCTAAAT
1 -ATCAGAGAGCACTGGCGTGCTAAAT
* * *
85531681 ATCAGAGAGCATTGACGTGCT-AGT
1 ATCAGAGAGCACTGGCGTGCTAAAT
85531705 AATCAGAGAGCACTGGCGTGCTAAAT
1 -ATCAGAGAGCACTGGCGTGCTAAAT
***
85531731 ATCAGAGAGCA-TAAATGTGCT--A-
1 ATCAGAGAGCACT-GGCGTGCTAAAT
85531753 ATCAGAGAGCACTGGCGTGCTAAAT
1 ATCAGAGAGCACTGGCGTGCTAAAT
85531778 ATCAGAGAGCA
1 ATCAGAGAGCA
85531789 TGCTGAAGTC
Statistics
Matches: 132, Mismatches: 17, Indels: 18
0.79 0.10 0.11
Matches are distributed among these distances:
22 16 0.12
23 2 0.02
24 6 0.05
25 104 0.79
26 4 0.03
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.21
Consensus pattern (25 bp):
ATCAGAGAGCACTGGCGTGCTAAAT
Found at i:85531666 original size:50 final size:49
Alignment explanation
Indices: 85531604--85531790 Score: 281
Period size: 50 Copynumber: 3.8 Consensus size: 49
85531594 ACAAATGTGC
* * *
85531604 TAATCAGAGAGCACTGACGTGCTAAATATCATAGAGCACTGGCGTGCTAG
1 TAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCA-TGACGTGCTAG
85531654 TAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCATTGACGTGCTAG
1 TAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCA-TGACGTGCTAG
**
85531704 TAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCAT-AAATG-T-G
1 TAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCATGACGTGCTAG
85531750 CTAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCATG
1 -TAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCATG
85531791 CTGAAGTCCC
Statistics
Matches: 129, Mismatches: 6, Indels: 6
0.91 0.04 0.04
Matches are distributed among these distances:
46 1 0.01
47 40 0.31
48 3 0.02
49 1 0.01
50 84 0.65
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.21
Consensus pattern (49 bp):
TAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCATGACGTGCTAG
Found at i:85531698 original size:75 final size:72
Alignment explanation
Indices: 85531564--85531788 Score: 246
Period size: 75 Copynumber: 3.1 Consensus size: 72
85531554 CACTAATGAA
** * *
85531564 CAGAGAGCACTGAAGTGCT--ATA-CAGAGAGCACAAATGTGCTAATCAGAGAGCACTGACGTGC
1 CAGAGAGCACTGGCGTGCTAAATATCAGAGAGCATAAACGTGCTAATCAGAGAGCACTGACGTGC
85531626 TAAATAT
66 TAAATAT
* * ** *
85531633 CATAGAGCACTGGCGTGCT-AGTAATCAGAGAGCACT-GGCGTGCTAAATATCAGAGAGCATTGA
1 CAGAGAGCACTGGCGTGCTAAAT-ATCAGAGAGCA-TAAACGTGCT--A-ATCAGAGAGCACTGA
*
85531696 CGTGCT-AGTAAT
61 CGTGCTAAAT-AT
* *
85531708 CAGAGAGCACTGGCGTGCTAAATATCAGAGAGCATAAATGTGCTAATCAGAGAGCACTGGCGTGC
1 CAGAGAGCACTGGCGTGCTAAATATCAGAGAGCATAAACGTGCTAATCAGAGAGCACTGACGTGC
85531773 TAAATAT
66 TAAATAT
85531780 CAGAGAGCA
1 CAGAGAGCA
85531789 TGCTGAAGTC
Statistics
Matches: 127, Mismatches: 18, Indels: 19
0.77 0.11 0.12
Matches are distributed among these distances:
69 16 0.13
70 1 0.01
71 1 0.01
72 44 0.35
73 3 0.02
74 4 0.03
75 56 0.44
76 2 0.02
ACGTcount: A:0.35, C:0.19, G:0.27, T:0.20
Consensus pattern (72 bp):
CAGAGAGCACTGGCGTGCTAAATATCAGAGAGCATAAACGTGCTAATCAGAGAGCACTGACGTGC
TAAATAT
Found at i:85537026 original size:25 final size:25
Alignment explanation
Indices: 85536993--85537219 Score: 251
Period size: 25 Copynumber: 9.4 Consensus size: 25
85536983 AAATGTGCTA
*
85536993 ATCAGAGAGCACTGACGTGCTAAAT
1 ATCAGAGAGCACTGGCGTGCTAAAT
* *
85537018 ATCATAGAGCACTGGCGTGCT-AGT
1 ATCAGAGAGCACTGGCGTGCTAAAT
85537042 AATCAGAGAGCACTGGCGTGCTAAAT
1 -ATCAGAGAGCACTGGCGTGCTAAAT
****
85537068 ATCAGAGAGCACAAATGTGCT--A-
1 ATCAGAGAGCACTGGCGTGCTAAAT
85537090 ATCAGAGAGCACTGGCGTGCTAAAT
1 ATCAGAGAGCACTGGCGTGCTAAAT
*
85537115 ATCAGAGAGCA-T-GCGTGCT-AGT
1 ATCAGAGAGCACTGGCGTGCTAAAT
85537137 AATCAGAGAGCACTGGCGTGCTAAAT
1 -ATCAGAGAGCACTGGCGTGCTAAAT
****
85537163 ATCAGAGAGCACAAATGTGCT--A-
1 ATCAGAGAGCACTGGCGTGCTAAAT
85537185 ATCAGAGAGCACT-GCGTGCTAAAT
1 ATCAGAGAGCACTGGCGTGCTAAAT
85537209 ATCAGAGAGCA
1 ATCAGAGAGCA
85537220 TGCTGAAGTC
Statistics
Matches: 168, Mismatches: 22, Indels: 25
0.78 0.10 0.12
Matches are distributed among these distances:
21 5 0.03
22 31 0.18
23 21 0.12
24 16 0.10
25 91 0.54
26 4 0.02
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.20
Consensus pattern (25 bp):
ATCAGAGAGCACTGGCGTGCTAAAT
Found at i:85537038 original size:47 final size:47
Alignment explanation
Indices: 85536952--85537219 Score: 332
Period size: 47 Copynumber: 5.7 Consensus size: 47
85536942 ACTAATGAAT
** *
85536952 AGAGAGCACTGAAGTGCT--ATA-CAGAGAGCACAAATGTGCTAATC
1 AGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAACGTGCTAATC
* * ***
85536996 AGAGAGCACTGACGTGCTAAATATCATAGAGCACTGGCGTGCTAGTAATC
1 AGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAACGTGC---TAATC
*
85537046 AGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGCTAATC
1 AGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAACGTGCTAATC
**
85537093 AGAGAGCACTGGCGTGCTAAATATCAGAGAG--CATGCGTGCTAGTAATC
1 AGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAACGTGC---TAATC
*
85537141 AGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGCTAATC
1 AGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAACGTGCTAATC
85537188 AGAGAGCACT-GCGTGCTAAATATCAGAGAGCA
1 AGAGAGCACTGGCGTGCTAAATATCAGAGAGCA
85537220 TGCTGAAGTC
Statistics
Matches: 195, Mismatches: 18, Indels: 20
0.84 0.08 0.09
Matches are distributed among these distances:
44 17 0.09
45 6 0.03
46 25 0.13
47 64 0.33
48 36 0.18
50 47 0.24
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.19
Consensus pattern (47 bp):
AGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAACGTGCTAATC
Found at i:85537180 original size:95 final size:95
Alignment explanation
Indices: 85536952--85537222 Score: 460
Period size: 95 Copynumber: 2.9 Consensus size: 95
85536942 ACTAATGAAT
** *
85536952 AGAGAGCACTGAAGTGCT--ATA-CAGAGAGCACAAATGTGCTAATCAGAGAGCACTGACGTGCT
1 AGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGCTAATCAGAGAGCACTGGCGTGCT
*
85537014 AAATATCATAGAGCACTGGCGTGCTAGTAATC
66 AAATATCAGAGAGCA-T-GCGTGCTAGTAATC
85537046 AGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGCTAATCAGAGAGCACTGGCGTGCT
1 AGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGCTAATCAGAGAGCACTGGCGTGCT
85537111 AAATATCAGAGAGCATGCGTGCTAGTAATC
66 AAATATCAGAGAGCATGCGTGCTAGTAATC
85537141 AGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGCTAATCAGAGAGCACT-GCGTGCT
1 AGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGCTAATCAGAGAGCACTGGCGTGCT
85537205 AAATATCAGAGAGCATGC
66 AAATATCAGAGAGCATGC
85537223 TGAAGTCCCT
Statistics
Matches: 170, Mismatches: 4, Indels: 6
0.94 0.02 0.03
Matches are distributed among these distances:
94 41 0.24
95 71 0.42
96 4 0.02
97 54 0.32
ACGTcount: A:0.35, C:0.19, G:0.27, T:0.20
Consensus pattern (95 bp):
AGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGCTAATCAGAGAGCACTGGCGTGCT
AAATATCAGAGAGCATGCGTGCTAGTAATC
Found at i:85540068 original size:21 final size:21
Alignment explanation
Indices: 85540044--85540118 Score: 72
Period size: 20 Copynumber: 3.8 Consensus size: 21
85540034 TAGCCTTCGG
85540044 GCTTCCGTCTAGCACTTGTGT
1 GCTTCCGTCTAGCACTTGTGT
*
85540065 GCTTCAGT-TAGC-CTTCG-G-
1 GCTTCCGTCTAGCACTT-GTGT
* *
85540083 GCTTCTGTCTAGCACTTATGT
1 GCTTCCGTCTAGCACTTGTGT
85540104 GCTTCCG-CTAG-ACTT
1 GCTTCCGTCTAGCACTT
85540119 CTGGCTTTAG
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
18 7 0.16
19 12 0.27
20 13 0.29
21 13 0.29
ACGTcount: A:0.12, C:0.28, G:0.23, T:0.37
Consensus pattern (21 bp):
GCTTCCGTCTAGCACTTGTGT
Found at i:85540074 original size:39 final size:39
Alignment explanation
Indices: 85540026--85540108 Score: 139
Period size: 39 Copynumber: 2.1 Consensus size: 39
85540016 GCTCTGATGA
* *
85540026 GCTTTAGTTAGCCTTCGGGCTTCCGTCTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTCTAGCACTTATGT
*
85540065 GCTTCAGTTAGCCTTCGGGCTTCTGTCTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTCTAGCACTTATGT
85540104 GCTTC
1 GCTTC
85540109 CGCTAGACTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.11, C:0.27, G:0.24, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTCTAGCACTTATGT
Found at i:85540125 original size:39 final size:39
Alignment explanation
Indices: 85540038--85540125 Score: 122
Period size: 39 Copynumber: 2.3 Consensus size: 39
85540028 TTTAGTTAGC
* * *
85540038 CTTCGGGCTTCCGTCTAGCACTTGTGTGCTTCAGTTAGC
1 CTTCGGGCTTCCGTCTAGCACTTATGTGCTTCAGCTAGA
* *
85540077 CTTCGGGCTTCTGTCTAGCACTTATGTGCTTCCGCTAGA
1 CTTCGGGCTTCCGTCTAGCACTTATGTGCTTCAGCTAGA
*
85540116 CTTCTGGCTT
1 CTTCGGGCTT
85540126 TAGATCACGA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.10, C:0.28, G:0.24, T:0.38
Consensus pattern (39 bp):
CTTCGGGCTTCCGTCTAGCACTTATGTGCTTCAGCTAGA
Done.