Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 297 of 444
Found at i:85925224 original size:8 final size:8
Alignment explanation
Indices: 85925211--85925235 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
85925201 AATCATAAAA
85925211 TACAAGAC
1 TACAAGAC
85925219 TACAAGAC
1 TACAAGAC
85925227 TACAAGAC
1 TACAAGAC
85925235 T
1 T
85925236 TACCAGAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.24, G:0.12, T:0.16
Consensus pattern (8 bp):
TACAAGAC
Found at i:85932770 original size:24 final size:23
Alignment explanation
Indices: 85932707--85932798 Score: 71
Period size: 24 Copynumber: 4.0 Consensus size: 23
85932697 ATATACATGT
* * *
85932707 AAAATTTTAAAATAATAATATAC
1 AAAAATTTAAAAAAATAATATAA
* * *
85932730 AAAAACTTACAACAAATAATTTAAA
1 AAAAATTTA-AAAAAATAATAT-AA
85932755 AAAAATTTAAAAAAAT-ATAT-A
1 AAAAATTTAAAAAAATAATATAA
* *
85932776 TAATATTTAAAACAAATAATATA
1 AAAAATTTAAAA-AAATAATATA
85932799 TATAAAACTA
Statistics
Matches: 53, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
21 11 0.21
22 4 0.08
23 14 0.26
24 15 0.28
25 9 0.17
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.30
Consensus pattern (23 bp):
AAAAATTTAAAAAAATAATATAA
Found at i:85932784 original size:21 final size:23
Alignment explanation
Indices: 85932759--85932800 Score: 70
Period size: 21 Copynumber: 1.9 Consensus size: 23
85932749 TTTAAAAAAA
85932759 ATTTAAAA-AAAT-ATATATAAT
1 ATTTAAAACAAATAATATATAAT
85932780 ATTTAAAACAAATAATATATA
1 ATTTAAAACAAATAATATATA
85932801 TAAAACTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 8 0.42
22 4 0.21
23 7 0.37
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (23 bp):
ATTTAAAACAAATAATATATAAT
Found at i:85932799 original size:18 final size:21
Alignment explanation
Indices: 85932759--85932806 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 21
85932749 TTTAAAAAAA
*
85932759 ATTTAAAAAAATATATATAAT
1 ATTTAAAACAATATATATAAT
85932780 ATTTAAAACAA-ATA-AT-AT
1 ATTTAAAACAATATATATAAT
*
85932798 ATATAAAAC
1 ATTTAAAAC
85932807 TATTCAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 10 0.40
19 2 0.08
20 3 0.12
21 10 0.40
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.33
Consensus pattern (21 bp):
ATTTAAAACAATATATATAAT
Found at i:85935311 original size:3 final size:3
Alignment explanation
Indices: 85935303--85935396 Score: 86
Period size: 3 Copynumber: 30.0 Consensus size: 3
85935293 TGTCTTTCTC
85935303 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -TT -TT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
85935349 CATT AGTCT ATTT ATTT ATTT ATT CATT -TT CTT CTT ATT ATT ATT ATT
1 -ATT A-T-T A-TT A-TT A-TT ATT -ATT ATT ATT ATT ATT ATT ATT ATT
85935397 TTTTCAACCT
Statistics
Matches: 83, Mismatches: 2, Indels: 12
0.86 0.02 0.12
Matches are distributed among these distances:
2 6 0.07
3 57 0.69
4 17 0.20
5 3 0.04
ACGTcount: A:0.27, C:0.05, G:0.01, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:85935550 original size:3 final size:3
Alignment explanation
Indices: 85935535--85935791 Score: 91
Period size: 3 Copynumber: 85.0 Consensus size: 3
85935525 ATGTTATACC
* * * *
85935535 TTA TTA CTA TTA TTA TTA TT- TTA CTA TTA TTA TCTA ATA -CA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
* * * * *
85935579 TTA TTA TCA CTA TTA TTA TTA TT- TTA CTA TTA TAA CTTAA CGTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TT-A -TTA TTA
* ** * *
85935626 TTA TTA CTT- TTA TTT TTA TTA CCA TTA CTT- TTA TTA TTT TTA CTA
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
* * ** ** * * * *
85935671 TTA TTA CTTG TAA TCG TTA GCA TCA TTA TTA ATG TTG TCT- TTA TT-
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* * * *
85935716 TTCT TTA CTA TTA TTT TTA TTA TCA TTAA TTAA TTA TTA TTA TTA TTA
1 TT-A TTA TTA TTA TTA TTA TTA TTA TT-A TT-A TTA TTA TTA TTA TTA
*
85935764 TTA TTA TTA TTA TTA -TA TTG TT- TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
85935792 CAAATTGTGA
Statistics
Matches: 187, Mismatches: 49, Indels: 36
0.69 0.18 0.13
Matches are distributed among these distances:
2 16 0.09
3 148 0.79
4 20 0.11
5 3 0.02
ACGTcount: A:0.30, C:0.09, G:0.03, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:85935625 original size:44 final size:47
Alignment explanation
Indices: 85935535--85935645 Score: 147
Period size: 47 Copynumber: 2.4 Consensus size: 47
85935525 ATGTTATACC
* *
85935535 TTATTACTATTATTATTATTTTACTATTATTATCTAATACATTATTA
1 TTATTACTATTATTATTATTTTACTATTATTAACTAATACAGTATTA
* *
85935582 TTATCACTATTATTATTATTTTACTATTA-TAACTTA-AC-GTATTA
1 TTATTACTATTATTATTATTTTACTATTATTAACTAATACAGTATTA
* *
85935626 TTATTACTTTTATTTTTATT
1 TTATTACTATTATTATTATT
85935646 ACCATTACTT
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
44 22 0.39
45 2 0.04
46 5 0.09
47 28 0.49
ACGTcount: A:0.32, C:0.09, G:0.01, T:0.59
Consensus pattern (47 bp):
TTATTACTATTATTATTATTTTACTATTATTAACTAATACAGTATTA
Found at i:85937838 original size:19 final size:19
Alignment explanation
Indices: 85937816--85937861 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
85937806 CTTCCTTTCT
*
85937816 TTTGCATT-CGTTCCATGCA
1 TTTGCATTGCATTCCAT-CA
*
85937835 TTTGCATTGCATTGCATCA
1 TTTGCATTGCATTCCATCA
85937854 TTTGCATT
1 TTTGCATT
85937862 AGACTTCCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.17, C:0.22, G:0.15, T:0.46
Consensus pattern (19 bp):
TTTGCATTGCATTCCATCA
Found at i:85939875 original size:4 final size:4
Alignment explanation
Indices: 85939868--85939898 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
85939858 AAAAAAAAAT
85939868 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
85939899 ACAAAAAAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:85939907 original size:12 final size:12
Alignment explanation
Indices: 85939860--85939899 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
85939850 AAGGCAAAAA
*
85939860 AAAAAAATAAAG
1 AAAAAAAGAAAG
*
85939872 AAAGAAAGAAAG
1 AAAAAAAGAAAG
*
85939884 AAAGAAAGAAAG
1 AAAAAAAGAAAG
85939896 AAAA
1 AAAA
85939900 CAAAAAAGGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (12 bp):
AAAAAAAGAAAG
Found at i:85941600 original size:60 final size:61
Alignment explanation
Indices: 85941534--85941657 Score: 187
Period size: 60 Copynumber: 2.0 Consensus size: 61
85941524 TCATTCATAA
*
85941534 CACATCTAGTTAGGAGCATTTGATTCATTTC-ATAGCATCCTAATTATTTGACGTAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATAGCATCCTAATTATTTGACATAAGCAT
* *
85941594 CACATCTAGTTGGGAGCATTTGATTCATTTCGGTTATAGCATCCTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTC-G--ATAGCATCCTAATTATTTGACATAAGCAT
85941658 AGATACATGA
Statistics
Matches: 57, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
60 30 0.53
64 27 0.47
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (61 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTCGATAGCATCCTAATTATTTGACATAAGCAT
Found at i:85942300 original size:88 final size:88
Alignment explanation
Indices: 85942073--85942748 Score: 774
Period size: 88 Copynumber: 7.7 Consensus size: 88
85942063 TGAAATCAAT
*
85942073 AATTTGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
* *
85942138 GCGTTGGAGCGGTTCGAAGCCAC
66 GAGTTGGAGCGGCTCGAAGCCAC
* * * * *
85942161 AA--CAG-ATCTCCTTGAAGTTTCACCGGAGTATATTGAGGCTACAAATCTCTTCTCTCTGAAAT
1 AATTC-GTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAAT
* * *
85942223 AGAGTTGGAGCTGCTCGAAACCAC
65 GGAGTTGGAGCGGCTCGAAGCCAC
* * *
85942247 AATTTGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAACCTCTTCTCCCTGAAGTG
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
* * *
85942312 GCGTTGGAGTGACTCGAAGCCA-
66 GAGTTGGAGCGGCTCGAAGCCAC
* * * * * * * *
85942334 TAGTAG-ATCTCCTTGAAGTTTCAGTGGAGTAGATC-AAGGCGACACATCTCCTCTCCTTGAAAT
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAA-GCTACAAATCTCTTCTCCCTGAAAT
* *
85942397 GGCGTTGGAGCGGCTTGAAGCCAC
65 GGAGTTGGAGCGGCTCGAAGCCAC
* * * * * * * *
85942421 AGTTCATATCTCCTTGAAGTTTCAGTGGAGTGGATTGAGGCTAAAAATCTCTTCTCCTTGAAATG
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
85942486 GTA-TTGGAGCGGCTCGAAGCCAC
66 G-AGTTGGAGCGGCTCGAAGCCAC
* * * * *
85942509 AGTTCGTCTCTTCTTGAAGTTCCAGCAGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
* * * *
85942574 GAATTGGAACGACTCGAAGCCAA
66 GAGTTGGAGCGGCTCGAAGCCAC
* * *
85942597 AATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCAAAGCTACAAATCTCTTCTCCCTAAAATT
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA-T
* * *
85942662 GCA-TTAGAGTGGCTCGAAGCCAC
65 GGAGTTGGAGCGGCTCGAAGCCAC
* * * *
85942685 AATTCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAACTACAAATCTCTCCTCCCTGAAAT
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAAT
85942749 TACAATAGAA
Statistics
Matches: 494, Mismatches: 83, Indels: 23
0.82 0.14 0.04
Matches are distributed among these distances:
85 2 0.00
86 140 0.28
87 8 0.02
88 340 0.69
89 4 0.01
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (88 bp):
AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
GAGTTGGAGCGGCTCGAAGCCAC
Found at i:85942309 original size:44 final size:44
Alignment explanation
Indices: 85942081--85942746 Score: 143
Period size: 44 Copynumber: 15.2 Consensus size: 44
85942071 ATAATTTGTA
*
85942081 TCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCT
1 TCTCCCTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCT
* ** * ** * * ***
85942125 TCTCCCTGAAATGGC-GTTGGAGCGGTTCGAAGCCAC-AA-CAGA
1 TCTCCCTGAAGTTTCAG-CGGAGTAGATCGAAGCTACAAATCTCT
* * * * *
85942167 TCTCCTTGAAGTTTCACCGGAGTATATTGAGGCTACAAATCTCT
1 TCTCCCTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCT
* * ** * * * * * *
85942211 TCTCTCTGAA-ATAGAGTTGGAGCT-GCTCGAAACCAC-AATTTGT
1 TCTCCCTGAAGTTTCAG-CGGAG-TAGATCGAAGCTACAAATCTCT
* *
85942254 ATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAACCTCT
1 -TCTCCCTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCT
** * * ***
85942299 TCTCCCTGAAGTGGC-GTTGGAGT-GACTCGAAGC--CATAGT-AGA
1 TCTCCCTGAAGTTTCAG-CGGAGTAGA-TCGAAGCTACA-AATCTCT
* * * * *
85942341 TCTCCTTGAAGTTTCAGTGGAGTAGATC-AAGGCGACACATCTCC
1 TCTCCCTGAAGTTTCAGCGGAGTAGATCGAA-GCTACAAATCTCT
* * ** * ** * * * *
85942385 TCTCCTTGAAATGGC-GTTGGAGCGGCTTGAAGCCAC-AGT-TCAT
1 TCTCCCTGAAGTTTCAG-CGGAGTAGATCGAAGCTACAAATCTC-T
* * * * * *
85942428 ATCTCCTTGAAGTTTCAGTGGAGTGGATTGAGGCTAAAAATCTCT
1 -TCTCCCTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCT
* * * ** ** * * **
85942473 TCTCCTTGAAATGGT-ATTGGAGCGGCTCGAAGCCACAGTTCGTC-
1 TCTCCCTGAAGT-TTCAGCGGAGTAGATCGAAGCTACAAATC-TCT
* * * *
85942517 TCTTCTTGAAGTTCCAGCAGAGTAGATCGAAGCTACAAATCTCT
1 TCTCCCTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCT
* *** ** *
85942561 TCTCCCTGAAATGGAATTGGA--ACGACTCGAAGCCA-AAAT-TCGT
1 TCTCCCTGAAGTTTCAGCGGAGTA-GA-TCGAAGCTACAAATCTC-T
* * *
85942604 ATCTCCTTGAAGTTCCAGCGGAGTAGATCAAAGCTACAAATCTCT
1 -TCTCCCTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCT
* * * *** * * * *
85942649 TCTCCCTAAAATTGCATTAGAGTGGCTCGAAGCCACAATTCT-T
1 TCTCCCTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCT
* * *
85942692 ATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAACTACAAATCTCT
1 -TCTCCCTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCT
*
85942737 CCTCCCTGAA
1 TCTCCCTGAA
85942747 ATTACAATAG
Statistics
Matches: 421, Mismatches: 161, Indels: 80
0.64 0.24 0.12
Matches are distributed among these distances:
41 2 0.00
42 52 0.12
43 33 0.08
44 304 0.72
45 25 0.06
46 5 0.01
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (44 bp):
TCTCCCTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCT
Found at i:85942406 original size:174 final size:173
Alignment explanation
Indices: 85942073--85942748 Score: 748
Period size: 174 Copynumber: 3.9 Consensus size: 173
85942063 TGAAATCAAT
*
85942073 AATTTGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
* * ** * * * **
85942138 GCGTTGGAGCGGTTCGAAGCCACAACAGATCTCCTTGAAGTTTCACCGGAGTATATTGAGGCTAC
66 GCATTGGAGCGGCTCGAAGCCACAGTAGATCTCCTTGAAGTTCCAGCGGAGTAGATCAAGGCTAC
* *
85942203 AAATCTCTTCT-CTCTGAAATAGAGTTGGAGCTGCTCGAAACCAC
131 AAATCTCTTCTCCT-TGAAATGGAGTTGGAGC-GCTCGAAGCCAC
* * *
85942247 AATTTGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAACCTCTTCTCCCTGAAGTG
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
* * * * * * *
85942312 GCGTTGGAGTGACTCGAAGCCATAGTAGATCTCCTTGAAGTTTCAGTGGAGTAGATCAAGGCGAC
66 GCATTGGAGCGGCTCGAAGCCACAGTAGATCTCCTTGAAGTTCCAGCGGAGTAGATCAAGGCTAC
* * * *
85942377 ACATCTCCTCTCCTTGAAATGGCGTTGGAGCGGCTTGAAGCCAC
131 AAATCTCTTCTCCTTGAAATGGAGTTGGAGC-GCTCGAAGCCAC
* * * * * * * *
85942421 AGTTCATATCTCCTTGAAGTTTCAGTGGAGTGGATTGAGGCTAAAAATCTCTTCTCCTTGAAATG
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
* * *
85942486 GTATTGGAGCGGCTCGAAGCCACAGTTCG-TCTCTTCTTGAAGTTCCAGCAGAGTAGATCGAA-G
66 GCATTGGAGCGGCTCGAAGCCACAG-TAGATCTC--CTTGAAGTTCCAGCGGAGTAGATC-AAGG
* * * *
85942549 CTACAAATCTCTTCTCCCTGAAATGGAATTGGAACGACTCGAAGCCAA
127 CTACAAATCTCTTCTCCTTGAAATGGAGTTGGAGCG-CTCGAAGCCAC
* * * *
85942597 AATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCAAAGCTACAAATCTCTTCTCCCTAAAATT
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
* * * ** *
85942662 GCATTAGAGTGGCTCGAAGCCACAATTCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAA-AC
66 GCATTGGAGCGGCTCGAAGCCAC-AGT-AGATCTCCTTGAAGTTCCAGCGGAGTAGATC-AAGGC
* *
85942726 TACAAATCTCTCCTCCCTGAAAT
128 TACAAATCTCTTCTCCTTGAAAT
85942749 TACAATAGAA
Statistics
Matches: 422, Mismatches: 71, Indels: 16
0.83 0.14 0.03
Matches are distributed among these distances:
174 228 0.54
175 5 0.01
176 182 0.43
177 3 0.01
178 4 0.01
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (173 bp):
AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
GCATTGGAGCGGCTCGAAGCCACAGTAGATCTCCTTGAAGTTCCAGCGGAGTAGATCAAGGCTAC
AAATCTCTTCTCCTTGAAATGGAGTTGGAGCGCTCGAAGCCAC
Found at i:85943358 original size:94 final size:94
Alignment explanation
Indices: 85943181--85943358 Score: 216
Period size: 94 Copynumber: 1.9 Consensus size: 94
85943171 CAGGTTGAAG
* * **
85943181 ATGGCGAATCTTATCTTCCTGTAGTTGTGGTGGAGCAGATTAAAGCCACAAATCCTATACCCCTG
1 ATGGCAAATCTTATCTCCCTCAAGTTGTGGTGGAGCAGATTAAAGCCACAAATCCTATACCCCTG
* *
85943246 AAGTTGCAGTGGGACAGATCGAAGTTATC
66 AAGTTGCAGAGAGACAGATCGAAGTTATC
* * * * * *
85943275 ATGGCAAATCTTATCTCCCTCAAGTTGTGGTGGGGCAGATTGAAGCCGCAAATCTTGT-CTCTCT
1 ATGGCAAATCTTATCTCCCTCAAGTTGTGGTGGAGCAGATTAAAGCCACAAATCCTATAC-CCCT
85943339 GAAGTTGCAGCAGAG-CAGAT
65 GAAGTTGCAG-AGAGACAGAT
85943359 TGAGGTTAAA
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
93 1 0.01
94 67 0.96
95 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (94 bp):
ATGGCAAATCTTATCTCCCTCAAGTTGTGGTGGAGCAGATTAAAGCCACAAATCCTATACCCCTG
AAGTTGCAGAGAGACAGATCGAAGTTATC
Found at i:85945305 original size:3 final size:3
Alignment explanation
Indices: 85945297--85945381 Score: 93
Period size: 3 Copynumber: 28.0 Consensus size: 3
85945287 TGTCTTTCTC
* * *
85945297 ATT ATT ATT ATT ATT ATT ATT GTT GTT GTT -TT ATT CATT AGTCT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT A-T-T ATT
*
85945344 -TA ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
85945382 TTCATATATG
Statistics
Matches: 74, Mismatches: 3, Indels: 10
0.85 0.03 0.11
Matches are distributed among these distances:
2 3 0.04
3 64 0.86
4 5 0.07
5 2 0.03
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:85947340 original size:23 final size:24
Alignment explanation
Indices: 85947305--85947359 Score: 87
Period size: 23 Copynumber: 2.4 Consensus size: 24
85947295 AAGGAGAAGA
85947305 AGAAAGG-GAGAAGAGATGGCGTC
1 AGAAAGGAGAGAAGAGATGGCGTC
*
85947328 AGAAAGGAG-GAAGAGATGGCGTT
1 AGAAAGGAGAGAAGAGATGGCGTC
85947351 AGAAAGGAG
1 AGAAAGGAG
85947360 TTTTGGGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 29 0.97
24 1 0.03
ACGTcount: A:0.42, C:0.05, G:0.44, T:0.09
Consensus pattern (24 bp):
AGAAAGGAGAGAAGAGATGGCGTC
Found at i:85953195 original size:37 final size:41
Alignment explanation
Indices: 85953151--85953226 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 41
85953141 TAACCAAAAT
85953151 TAGACCAACATG-T-TTA-AAT-AATAAAGCACTCAAATAA
1 TAGACCAACATGTTGTTATAATAAATAAAGCACTCAAATAA
85953188 TAGACCAACATGTTGTTATAATGAAATAAAGCACTCAAA
1 TAGACCAACATGTTGTTATAAT-AAATAAAGCACTCAAA
85953227 GCTTTGAAAC
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
37 12 0.35
38 1 0.03
39 3 0.09
40 3 0.09
42 15 0.44
ACGTcount: A:0.49, C:0.16, G:0.11, T:0.25
Consensus pattern (41 bp):
TAGACCAACATGTTGTTATAATAAATAAAGCACTCAAATAA
Found at i:85954861 original size:6 final size:6
Alignment explanation
Indices: 85954837--85954888 Score: 77
Period size: 6 Copynumber: 8.5 Consensus size: 6
85954827 AAATTTTTAT
* *
85954837 ATAAAA CATTAAA AGAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
1 ATAAAA -ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
85954886 ATA
1 ATA
85954889 TTATTTTTCA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
6 36 0.88
7 5 0.12
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (6 bp):
ATAAAA
Found at i:85964179 original size:20 final size:18
Alignment explanation
Indices: 85964154--85964197 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
85964144 AAAAAATAAA
85964154 AATAAAATAATAATGACAAT
1 AATAAAATAA-AATG-CAAT
*
85964174 AAT-AAATAAAATGCACT
1 AATAAAATAAAATGCAAT
85964191 AATAAAA
1 AATAAAA
85964198 ACATGTGTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 6 0.27
18 7 0.32
19 6 0.27
20 3 0.14
ACGTcount: A:0.66, C:0.07, G:0.05, T:0.23
Consensus pattern (18 bp):
AATAAAATAAAATGCAAT
Found at i:85964193 original size:17 final size:19
Alignment explanation
Indices: 85964158--85964196 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
85964148 AATAAAAATA
85964158 AAATAATAATGACAATAAT
1 AAATAATAATGACAATAAT
*
85964177 AAATAA-AATG-CACTAAT
1 AAATAATAATGACAATAAT
85964194 AAA
1 AAA
85964197 AACATGTGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 9 0.47
18 4 0.21
19 6 0.32
ACGTcount: A:0.64, C:0.08, G:0.05, T:0.23
Consensus pattern (19 bp):
AAATAATAATGACAATAAT
Found at i:85964253 original size:4 final size:4
Alignment explanation
Indices: 85964233--85964291 Score: 54
Period size: 4 Copynumber: 15.8 Consensus size: 4
85964223 TGTAAAAAAG
* * * *
85964233 TAAA TAAA GAAG T-AA TAAA TAAA TAAA TGAA TAAA TAAA -CAA -AAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
85964278 TAAA TAAA -AAA TAA
1 TAAA TAAA TAAA TAA
85964292 TTTGTAAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
3 9 0.20
4 35 0.80
ACGTcount: A:0.73, C:0.02, G:0.05, T:0.20
Consensus pattern (4 bp):
TAAA
Found at i:85968194 original size:51 final size:50
Alignment explanation
Indices: 85968127--85968403 Score: 170
Period size: 51 Copynumber: 5.7 Consensus size: 50
85968117 AGGATTTGTC
* *
85968127 GCTTCAATCTGCTCCACTGCAACTTCAAGGAGATGATATTTGTAACTTATA
1 GCTTTAATCTGTTCCACTGCAACTTCAAGGAGAT-ATATTTGTAACTTATA
* * * *
85968178 GCTTTAATCTATTCCACTACAACTTCAAGGA-A-ATA--AG--ATTTATA
1 GCTTTAATCTGTTCCACTGCAACTTCAAGGAGATATATTTGTAACTTATA
* * * * * *
85968222 GCTTTAATCTGCTCTATTGCAACTTTAGGGAGATA-AGGTTTGTAACTTGTA
1 GCTTTAATCTGTTCCACTGCAACTTCAAGGAGATATA--TTTGTAACTTATA
* * * *
85968273 GCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCG---C-TAT-
1 GCTTTAATCTGTTCCACTGCAACTTCAAGGAGAT-ATATTTGTAACTTATA
* * * * * * * *
85968319 -CTTCAATTTGCTCCATTGTAACTTCAGGGAGATGAGT-TTTGTAACTTGTG
1 GCTTTAATCTGTTCCACTGCAACTTCAAGGAGAT-A-TATTTGTAACTTATA
85968369 GCTTTAATCTGTTCCACTGCAACTTC-AGAGAGATA
1 GCTTTAATCTGTTCCACTGCAACTTCAAG-GAGATA
85968404 AGATTCACTA
Statistics
Matches: 169, Mismatches: 39, Indels: 37
0.69 0.16 0.15
Matches are distributed among these distances:
44 30 0.18
45 33 0.20
46 2 0.01
47 2 0.01
48 5 0.03
49 3 0.02
50 3 0.02
51 89 0.53
52 1 0.01
53 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (50 bp):
GCTTTAATCTGTTCCACTGCAACTTCAAGGAGATATATTTGTAACTTATA
Found at i:85968264 original size:95 final size:95
Alignment explanation
Indices: 85968098--85968408 Score: 354
Period size: 95 Copynumber: 3.3 Consensus size: 95
85968088 ATTCTAACCT
* * * * * * * *
85968098 ACTACAACTTTAGGGATATAGGATTTGTCGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATGA
1 ACTACAACTTCAAGGAAATAAGATTTATAGCTTCAATCTGCTCCATTGCAACTTCAGGGAGATGA
* * *
85968163 TATTTGTAACTTATAGCTTTAATCTATTCC
66 GATTTGTAACTTGTAGCTTTAATCTGTTCC
* * * *
85968193 ACTACAACTTCAAGGAAATAAGATTTATAGCTTTAATCTGCTCTATTGCAACTTTAGGGAGATAA
1 ACTACAACTTCAAGGAAATAAGATTTATAGCTTCAATCTGCTCCATTGCAACTTCAGGGAGATGA
*
85968258 GGTTTGTAACTTGTAGCTTTAATCTGTTCC
66 GATTTGTAACTTGTAGCTTTAATCTGTTCC
* * ** * * *
85968288 ACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAATTTGCTCCATTGTAACTTCAGGGAGATG
1 ACTACAACTTCAAGGAAATAAGATT-TATAGCTTCAATCTGCTCCATTGCAACTTCAGGGAGATG
* *
85968353 AGTTTTGTAACTTGTGGCTTTAATCTGTTCC
65 AGATTTGTAACTTGTAGCTTTAATCTGTTCC
* *
85968384 ACTGCAACTTC-AGAGAGATAAGATT
1 ACTACAACTTCAAG-GAAATAAGATT
85968409 CACTATGGTA
Statistics
Matches: 183, Mismatches: 31, Indels: 3
0.84 0.14 0.01
Matches are distributed among these distances:
95 103 0.56
96 80 0.44
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (95 bp):
ACTACAACTTCAAGGAAATAAGATTTATAGCTTCAATCTGCTCCATTGCAACTTCAGGGAGATGA
GATTTGTAACTTGTAGCTTTAATCTGTTCC
Found at i:85968377 original size:96 final size:96
Alignment explanation
Indices: 85968128--85968414 Score: 380
Period size: 96 Copynumber: 3.0 Consensus size: 96
85968118 GGATTTGTCG
* * * *
85968128 CTTCAATCTGCTCCACTGCAACTTCAAGGAGATGA-TATTTGTAACTTATAGCTTTAATCTATTC
1 CTTCAATCTGCTCCATTGCAACTTCAGGGAGATGAGT-TTTGTAACTTGTAGCTTTAATCTGTTC
* * * *
85968192 CACTACAACTTCAAGGAAATAAGATTTA-TAG
65 CACTGCAACTTCAGGGAAATAAGATTCACTAT
* * * * *
85968223 CTTTAATCTGCTCTATTGCAACTTTAGGGAGATAAGGTTTGTAACTTGTAGCTTTAATCTGTTCC
1 CTTCAATCTGCTCCATTGCAACTTCAGGGAGATGAGTTTTGTAACTTGTAGCTTTAATCTGTTCC
*
85968288 ACTGCAACTTCAGGGAAATAAGATTCGCTAT
66 ACTGCAACTTCAGGGAAATAAGATTCACTAT
* * *
85968319 CTTCAATTTGCTCCATTGTAACTTCAGGGAGATGAGTTTTGTAACTTGTGGCTTTAATCTGTTCC
1 CTTCAATCTGCTCCATTGCAACTTCAGGGAGATGAGTTTTGTAACTTGTAGCTTTAATCTGTTCC
* *
85968384 ACTGCAACTTCAGAGAGATAAGATTCACTAT
66 ACTGCAACTTCAGGGAAATAAGATTCACTAT
85968415 GGTAAATTCA
Statistics
Matches: 165, Mismatches: 25, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
95 78 0.47
96 87 0.53
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.36
Consensus pattern (96 bp):
CTTCAATCTGCTCCATTGCAACTTCAGGGAGATGAGTTTTGTAACTTGTAGCTTTAATCTGTTCC
ACTGCAACTTCAGGGAAATAAGATTCACTAT
Found at i:85981800 original size:26 final size:26
Alignment explanation
Indices: 85981761--85981811 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
85981751 AGGAATACCA
85981761 TAATAATATAATTATAATAATAATAT
1 TAATAATATAATTATAATAATAATAT
*
85981787 TAATAATCAT-ATTATAGTAATAATA
1 TAATAAT-ATAATTATAATAATAATA
85981812 AATAAGTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (26 bp):
TAATAATATAATTATAATAATAATAT
Found at i:85981975 original size:18 final size:19
Alignment explanation
Indices: 85981937--85981976 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
85981927 CACACCAAAA
*
85981937 AAATAATAATGACAATAAT
1 AAATAAAAATGACAATAAT
*
85981956 AAATAAAAATG-CACTAAT
1 AAATAAAAATGACAATAAT
85981974 AAA
1 AAA
85981977 AGCATGAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.65, C:0.07, G:0.05, T:0.23
Consensus pattern (19 bp):
AAATAAAAATGACAATAAT
Found at i:85982018 original size:4 final size:4
Alignment explanation
Indices: 85982005--85982061 Score: 66
Period size: 4 Copynumber: 15.0 Consensus size: 4
85981995 TTTTTAAGTG
* * *
85982005 TAAA -AAA TAAA TAAA GAAG T-AA TAAA TAAA TAAA TGAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
85982051 TAAA -AAA TAAA
1 TAAA TAAA TAAA
85982062 AACTATTTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
3 8 0.18
4 36 0.82
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (4 bp):
TAAA
Found at i:85982039 original size:27 final size:26
Alignment explanation
Indices: 85982005--85982063 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
85981995 TTTTTAAGTG
* *
85982005 TAAAAAATAAATAAAGAAGTAATAAA
1 TAAAAAATAAATAAAGAAATAAAAAA
* *
85982031 TAAATAAATGAATAAATAAATAAAAAA
1 TAAA-AAATAAATAAAGAAATAAAAAA
85982058 TAAAAA
1 TAAAAA
85982064 CTATTTATAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 6 0.21
27 22 0.79
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (26 bp):
TAAAAAATAAATAAAGAAATAAAAAA
Found at i:85983366 original size:25 final size:23
Alignment explanation
Indices: 85983337--85983394 Score: 57
Period size: 23 Copynumber: 2.5 Consensus size: 23
85983327 TGTTTTGGGC
85983337 TTGTAAATTGAGGCATGATAT-TTTT
1 TTGTAAATTG-GGC-TG-TATCTTTT
**
85983362 TTGTATTTTGGGCTGTATCTTTT
1 TTGTAAATTGGGCTGTATCTTTT
85983385 TTGT-AATTGG
1 TTGTAAATTGG
85983395 ACTTAAACTT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
22 7 0.25
23 10 0.36
24 3 0.11
25 8 0.29
ACGTcount: A:0.19, C:0.05, G:0.22, T:0.53
Consensus pattern (23 bp):
TTGTAAATTGGGCTGTATCTTTT
Found at i:85983627 original size:12 final size:12
Alignment explanation
Indices: 85983612--85983637 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
85983602 AGGCCAAGCA
85983612 TTAGCGGCATTT
1 TTAGCGGCATTT
85983624 TTAGCGGCATTT
1 TTAGCGGCATTT
85983636 TT
1 TT
85983638 GATAAAAACG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.23, T:0.46
Consensus pattern (12 bp):
TTAGCGGCATTT
Found at i:85983883 original size:25 final size:25
Alignment explanation
Indices: 85983853--85983910 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
85983843 CCCCTCTGCT
* *
85983853 GCATCGCCATCGACACTCCTCTACC
1 GCATCGCCATCAACACTCCTCTAAC
* * *
85983878 GTATCGCCGTCAACACTGCTCTAAC
1 GCATCGCCATCAACACTCCTCTAAC
85983903 GCATCGCC
1 GCATCGCC
85983911 TTGTAAGTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.21, C:0.43, G:0.16, T:0.21
Consensus pattern (25 bp):
GCATCGCCATCAACACTCCTCTAAC
Found at i:85984690 original size:28 final size:29
Alignment explanation
Indices: 85984636--85984690 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
85984626 ATAATCATAT
85984636 TTTTAAACAATAATCTTAATTTGATAAGC
1 TTTTAAACAATAATCTTAATTTGATAAGC
* * *
85984665 TTTTAAAC-ATATTTTTAATTTTATAA
1 TTTTAAACAATAATCTTAATTTGATAA
85984691 ATATTTTGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 15 0.65
29 8 0.35
ACGTcount: A:0.40, C:0.07, G:0.04, T:0.49
Consensus pattern (29 bp):
TTTTAAACAATAATCTTAATTTGATAAGC
Found at i:85996480 original size:16 final size:16
Alignment explanation
Indices: 85996459--85996512 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 16
85996449 GAGCCTAGGG
85996459 GCAAAAGTGTAATTAT
1 GCAAAAGTGTAATTAT
* ***
85996475 GCAAAAGT-TTA-GGG
1 GCAAAAGTGTAATTAT
85996489 GCAAAAGTGTAATTAT
1 GCAAAAGTGTAATTAT
85996505 GCAAAAGT
1 GCAAAAGT
85996513 TTAGGGGCAA
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
14 8 0.29
15 4 0.14
16 16 0.57
ACGTcount: A:0.43, C:0.07, G:0.24, T:0.26
Consensus pattern (16 bp):
GCAAAAGTGTAATTAT
Found at i:85996494 original size:14 final size:14
Alignment explanation
Indices: 85996475--85996526 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
85996465 GTGTAATTAT
85996475 GCAAAAGTTTAGGG
1 GCAAAAGTTTAGGG
* ***
85996489 GCAAAAGTGTAATTAT
1 GCAAAAGT-TTA-GGG
85996505 GCAAAAGTTTAGGG
1 GCAAAAGTTTAGGG
85996519 GCAAAAGT
1 GCAAAAGT
85996527 GTAATTTTTT
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
14 16 0.57
15 4 0.14
16 8 0.29
ACGTcount: A:0.40, C:0.08, G:0.29, T:0.23
Consensus pattern (14 bp):
GCAAAAGTTTAGGG
Found at i:85996543 original size:30 final size:30
Alignment explanation
Indices: 85996454--85996532 Score: 158
Period size: 30 Copynumber: 2.6 Consensus size: 30
85996444 TTCCCGAGCC
85996454 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
85996484 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
85996514 TAGGGGCAAAAGTGTAATT
1 TAGGGGCAAAAGTGTAATT
85996533 TTTTTAAAGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.39, C:0.06, G:0.28, T:0.27
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGCAAAAGTT
Found at i:85997019 original size:46 final size:46
Alignment explanation
Indices: 85996966--85997138 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
85996956 TGGTTGAGCA
*
85996966 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * * *
85997012 TCTGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
85997059 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
85997105 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
85997139 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.57
47 27 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:85997122 original size:93 final size:93
Alignment explanation
Indices: 85996963--85997133 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
85996953 GGATGGTTGA
* * *
85996963 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
85997028 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
85997056 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
85997121 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
85997134 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:85997400 original size:19 final size:20
Alignment explanation
Indices: 85997363--85997400 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
85997353 ATAAGGTGGT
85997363 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
85997383 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
85997401 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:86000416 original size:42 final size:42
Alignment explanation
Indices: 86000362--86000446 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
86000352 TCTTTGTCTA
86000362 AGTTGGGTTTAAGTGCTTCATTTTCCATTATTAATCTTTTGG
1 AGTTGGGTTTAAGTGCTTCATTTTCCATTATTAATCTTTTGG
86000404 AGTTGGGTTTAAGTGCTTCATTTTCCATTATTAATCTTTTGG
1 AGTTGGGTTTAAGTGCTTCATTTTCCATTATTAATCTTTTGG
86000446 A
1 A
86000447 TTATCTAGGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.20, C:0.12, G:0.19, T:0.49
Consensus pattern (42 bp):
AGTTGGGTTTAAGTGCTTCATTTTCCATTATTAATCTTTTGG
Found at i:86003760 original size:65 final size:64
Alignment explanation
Indices: 86003678--86003827 Score: 203
Period size: 65 Copynumber: 2.3 Consensus size: 64
86003668 TGCGACTACA
* * *
86003678 GCAGCTGTTTATGAGCGTCCTGCTTATTA-ATCGGTTGTGATCCTACATATGTTGCGGACACAAA
1 GCAGCTCTTTATGAGCGTCCT-ATTA-TACATAGGTTGTGATCCTACATATGTTGCGGACACAAA
86003742 C
64 C
* * * *
86003743 GCAGCTCTTTGTGAGCGTCCTATTATACGATAGGTTGTGCTCCTGCATATGTTGTGGACACAAAC
1 GCAGCTCTTTATGAGCGTCCTATTATAC-ATAGGTTGTGATCCTACATATGTTGCGGACACAAAC
86003808 GCAGCTCTTTATGAGCGTCC
1 GCAGCTCTTTATGAGCGTCC
86003828 CAATATGGCT
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
63 2 0.03
64 3 0.04
65 70 0.93
ACGTcount: A:0.21, C:0.23, G:0.24, T:0.32
Consensus pattern (64 bp):
GCAGCTCTTTATGAGCGTCCTATTATACATAGGTTGTGATCCTACATATGTTGCGGACACAAAC
Found at i:86006566 original size:53 final size:53
Alignment explanation
Indices: 86006485--86006638 Score: 195
Period size: 53 Copynumber: 2.9 Consensus size: 53
86006475 GACGAAAAAT
* *
86006485 ATGTGATAA-GTGCAC-CCGTTTAAGACCATATCTGGGCTATGGCATCGGTGCA
1 ATGTGATAATGTG-ACTCCGTATAAGACCATATCTGGGCTATGGCATCGGTACA
* * * *
86006537 ATGTGATAATGTGACTCCGTATAAGACCATAGCTAGGCTATGGCATTGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATATCTGGGCTATGGCATCGGTACA
* * * *
86006590 ATGTGATAATGTGATTCCGTATAAGACCATGTCTGGGATATGGCTTCGG
1 ATGTGATAATGTGACTCCGTATAAGACCATATCTGGGCTATGGCATCGG
86006639 ATGATATGTG
Statistics
Matches: 87, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
52 11 0.13
53 76 0.87
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATATCTGGGCTATGGCATCGGTACA
Found at i:86014067 original size:53 final size:53
Alignment explanation
Indices: 86014001--86014139 Score: 206
Period size: 53 Copynumber: 2.6 Consensus size: 53
86013991 ATAAGTGCGC
* *
86014001 CCGTTTAAGACCATATCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATATCTGGGCTATGGCATCGGTACAATGTGATAATGTGACT
* * *
86014054 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATATCTGGGCTATGGCATCGGTACAATGTGATAATGTGACT
* * *
86014107 CCGTATAAGACCATGTCTGGGATATGGCTTCGG
1 CCGTATAAGACCATATCTGGGCTATGGCATCGG
86014140 AATGATATGT
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 77 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (53 bp):
CCGTATAAGACCATATCTGGGCTATGGCATCGGTACAATGTGATAATGTGACT
Found at i:86023282 original size:21 final size:21
Alignment explanation
Indices: 86023257--86023299 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
86023247 GTTGTTGAGA
*
86023257 AGGAAGTTGCTGCTGTAGAAG
1 AGGAAGTTGCTGCTGAAGAAG
*
86023278 AGGAAGTTGTTGCTGAAGAAG
1 AGGAAGTTGCTGCTGAAGAAG
86023299 A
1 A
86023300 AGTTACTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.07, G:0.37, T:0.23
Consensus pattern (21 bp):
AGGAAGTTGCTGCTGAAGAAG
Found at i:86024331 original size:14 final size:15
Alignment explanation
Indices: 86024307--86024336 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
86024297 CCTTATTCTA
86024307 AAAATATATATAAAT
1 AAAATATATATAAAT
86024322 AAAA-ATATATAAAT
1 AAAATATATATAAAT
86024336 A
1 A
86024337 CTTAGTATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AAAATATATATAAAT
Found at i:86025133 original size:33 final size:33
Alignment explanation
Indices: 86025080--86025151 Score: 119
Period size: 33 Copynumber: 2.2 Consensus size: 33
86025070 AGCTTCTAAC
*
86025080 GAGA-ATACCTAAGTGTAAGACAAGAGGGAATA
1 GAGAGATACCTAAGTGCAAGACAAGAGGGAATA
*
86025112 GAGAGATACCTAATTGCAAGACAAGAGGGAATA
1 GAGAGATACCTAAGTGCAAGACAAGAGGGAATA
86025145 GAGAGAT
1 GAGAGAT
86025152 TTAGTCTTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
32 4 0.11
33 33 0.89
ACGTcount: A:0.46, C:0.10, G:0.29, T:0.15
Consensus pattern (33 bp):
GAGAGATACCTAAGTGCAAGACAAGAGGGAATA
Found at i:86029127 original size:29 final size:27
Alignment explanation
Indices: 86029093--86029195 Score: 107
Period size: 29 Copynumber: 3.6 Consensus size: 27
86029083 TACTCAATCA
*
86029093 CGCACACTTAGTGCCACGTAATTCAAGCC
1 CGCACACTTAGTGCCA--TAATTCAAGCT
* * *
86029122 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATA-A-TTCAAGCT
86029151 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCATA-ATT-CAAGCT
*
86029180 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
86029196 ACCTCGTCAC
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
27 2 0.03
28 2 0.03
29 58 0.94
ACGTcount: A:0.30, C:0.34, G:0.16, T:0.20
Consensus pattern (27 bp):
CGCACACTTAGTGCCATAATTCAAGCT
Found at i:86037097 original size:29 final size:27
Alignment explanation
Indices: 86037031--86037130 Score: 112
Period size: 29 Copynumber: 3.6 Consensus size: 27
86037021 TACTCAATCA
*
86037031 CGCACACTTAGTGCCATAT-TCAAGCC
1 CGCACACTTAGTGCCATATATCAAGCT
* *
86037057 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-T-CAAGCT
*
86037086 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCATATA-T-CAAGCT
*
86037115 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
86037131 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
26 18 0.29
28 1 0.02
29 43 0.69
ACGTcount: A:0.30, C:0.34, G:0.15, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATATATCAAGCT
Found at i:86044988 original size:28 final size:29
Alignment explanation
Indices: 86044957--86045035 Score: 88
Period size: 28 Copynumber: 2.8 Consensus size: 29
86044947 TGCTTAATAC
* *
86044957 TCAATCACGCACACTTAGTGCCATGTA-T
1 TCAAACACGCACACTTAGTGCCATATAGT
* * *
86044985 TCAAGCCCGCACACATAGTGCCATATAGT
1 TCAAACACGCACACTTAGTGCCATATAGT
* *
86045014 CCAAACTCGCACACTTAGTGCC
1 TCAAACACGCACACTTAGTGCC
86045036 GTACATTACA
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
28 23 0.55
29 19 0.45
ACGTcount: A:0.29, C:0.33, G:0.15, T:0.23
Consensus pattern (29 bp):
TCAAACACGCACACTTAGTGCCATATAGT
Found at i:86045032 original size:29 final size:28
Alignment explanation
Indices: 86044964--86045065 Score: 105
Period size: 29 Copynumber: 3.6 Consensus size: 28
86044954 TACTCAATCA
* * *
86044964 CGCACACTTAGTGCCATGTATTCAAGCC
1 CGCACACTTAGTGCCATATATACAAGCT
* * *
86044992 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TACAAGCT
* *
86045021 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATA-TACAAGCT
*
86045050 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
86045066 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
28 18 0.30
29 42 0.70
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATACAAGCT
Found at i:86049016 original size:40 final size:40
Alignment explanation
Indices: 86048961--86049055 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 40
86048951 CCTTAGTGGC
*
86048961 ATTAGCGGCGTTTTTTAG-AAAACGCCT-CTATAGGTAGAGT
1 ATTAGCGGCATTTTTTAGAAAAACG-CTGCTATAGGT-GAGT
*
86049001 ATTAGCGGCATTTTTTTGAAAAACGCTGCTATAGGTGAGT
1 ATTAGCGGCATTTTTTAGAAAAACGCTGCTATAGGTGAGT
*
86049041 ATTAGCGGCAGTTTT
1 ATTAGCGGCATTTTT
86049056 AAACGCCGCA
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
40 36 0.72
41 14 0.28
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (40 bp):
ATTAGCGGCATTTTTTAGAAAAACGCTGCTATAGGTGAGT
Found at i:86049502 original size:51 final size:52
Alignment explanation
Indices: 86049411--86049521 Score: 118
Period size: 51 Copynumber: 2.2 Consensus size: 52
86049401 ATATTTTACG
** * * *
86049411 GTTTAAGGATTATGTGTTTAGGAATTATGGGTTTAGGGGTTGT-GGTTTAAA
1 GTTTAAGGATTATGTGGGTAGGAATTAAGGGTTTAAGGGTTATGGGTTTAAA
** *
86049462 GTTTAAGGATTA-GTGGGTAGGGGTTAAGGGTTTTAAGGGTTATGGGTTTAAG
1 GTTTAAGGATTATGTGGGTAGGAATTAAGGG-TTTAAGGGTTATGGGTTTAAA
*
86049514 GGTTAAGG
1 GTTTAAGG
86049522 GTTAAGGGTT
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
50 13 0.27
51 22 0.45
52 14 0.29
ACGTcount: A:0.23, C:0.00, G:0.38, T:0.39
Consensus pattern (52 bp):
GTTTAAGGATTATGTGGGTAGGAATTAAGGGTTTAAGGGTTATGGGTTTAAA
Found at i:86049513 original size:15 final size:15
Alignment explanation
Indices: 86049482--86049588 Score: 85
Period size: 15 Copynumber: 7.2 Consensus size: 15
86049472 TAGTGGGTAG
86049482 GGGTTAAGGGTTTTAA
1 GGGTTAAGGG-TTTAA
*
86049498 GGGTTATGGGTTTAA
1 GGGTTAAGGGTTTAA
86049513 GGGTTAAGGG-TTAA
1 GGGTTAAGGGTTTAA
* **
86049527 GGGTTATGCATTTAA
1 GGGTTAAGGGTTTAA
* ** *
86049542 TGGTTAAGGGGATAT
1 GGGTTAAGGGTTTAA
*
86049557 GGGTT-AGGGGTTAA
1 GGGTTAAGGGTTTAA
*
86049571 GGGTTTAATGG-TTAA
1 GGG-TTAAGGGTTTAA
86049586 GGG
1 GGG
86049589 GACATGGGTT
Statistics
Matches: 72, Mismatches: 16, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
14 21 0.29
15 39 0.54
16 12 0.17
ACGTcount: A:0.24, C:0.01, G:0.40, T:0.35
Consensus pattern (15 bp):
GGGTTAAGGGTTTAA
Found at i:86049519 original size:22 final size:23
Alignment explanation
Indices: 86049480--86049588 Score: 82
Period size: 22 Copynumber: 4.9 Consensus size: 23
86049470 ATTAGTGGGT
*
86049480 AGGGGTTAAGGGTTTTAAGGGTTA
1 AGGGTTTAAGGG-TTTAAGGGTTA
*
86049504 TGGGTTTAAGGG-TTAAGGGTTA
1 AGGGTTTAAGGGTTTAAGGGTTA
* ** *
86049526 AGGG-TTATGCATTTAATGGTTA
1 AGGGTTTAAGGGTTTAAGGGTTA
** * *
86049548 AGGGGATATGGG-TTAGGGGTTA
1 AGGGTTTAAGGGTTTAAGGGTTA
*
86049570 AGGGTTTAATGG-TTAAGGG
1 AGGGTTTAAGGGTTTAAGGG
86049589 GACATGGGTT
Statistics
Matches: 66, Mismatches: 17, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
21 4 0.06
22 48 0.73
23 4 0.06
24 10 0.15
ACGTcount: A:0.25, C:0.01, G:0.40, T:0.34
Consensus pattern (23 bp):
AGGGTTTAAGGGTTTAAGGGTTA
Found at i:86049569 original size:37 final size:37
Alignment explanation
Indices: 86049520--86049605 Score: 118
Period size: 37 Copynumber: 2.3 Consensus size: 37
86049510 TAAGGGTTAA
* * *
86049520 GGGTTAAGGGTTATGCATTTAATGGTTAAGGGGATAT
1 GGGTTAGGGGTTAAGCATTTAATGGTTAAGGGGACAT
**
86049557 GGGTTAGGGGTTAAGGGTTTAATGGTTAAGGGGACAT
1 GGGTTAGGGGTTAAGCATTTAATGGTTAAGGGGACAT
*
86049594 GGGTTAGTGGTT
1 GGGTTAGGGGTT
86049606 TATGGTTTAT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.23, C:0.02, G:0.41, T:0.34
Consensus pattern (37 bp):
GGGTTAGGGGTTAAGCATTTAATGGTTAAGGGGACAT
Found at i:86049578 original size:8 final size:7
Alignment explanation
Indices: 86049482--86049588 Score: 79
Period size: 7 Copynumber: 14.4 Consensus size: 7
86049472 TAGTGGGTAG
86049482 GGGTTAA
1 GGGTTAA
86049489 GGGTTTTAA
1 GGG--TTAA
*
86049498 GGGTTAT
1 GGGTTAA
86049505 GGGTTTAA
1 GGG-TTAA
86049513 GGGTTAA
1 GGGTTAA
86049520 GGGTTAA
1 GGGTTAA
*
86049527 GGGTTAT
1 GGGTTAA
**
86049534 GCATTTAA
1 G-GGTTAA
*
86049542 TGGTTAA
1 GGGTTAA
* *
86049549 GGGGATAT
1 -GGGTTAA
*
86049557 GGGTTAG
1 GGGTTAA
86049564 GGGTTAA
1 GGGTTAA
86049571 GGGTTTAA
1 GGG-TTAA
*
86049579 TGGTTAA
1 GGGTTAA
86049586 GGG
1 GGG
86049589 GACATGGGTT
Statistics
Matches: 77, Mismatches: 17, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
7 51 0.66
8 19 0.25
9 7 0.09
ACGTcount: A:0.24, C:0.01, G:0.40, T:0.35
Consensus pattern (7 bp):
GGGTTAA
Found at i:86049613 original size:37 final size:37
Alignment explanation
Indices: 86049537--86049622 Score: 120
Period size: 37 Copynumber: 2.3 Consensus size: 37
86049527 GGGTTATGCA
*
86049537 TTTAATGGTTAAGGGGATATGGGTTAGGGGTTAAGGG
1 TTTAATGGTTAAGGGGACATGGGTTAGGGGTTAAGGG
* * *
86049574 TTTAATGGTTAAGGGGACATGGGTTAGTGGTTTATGG
1 TTTAATGGTTAAGGGGACATGGGTTAGGGGTTAAGGG
86049611 TTT-ATGAGTTAA
1 TTTAATG-GTTAA
86049623 TATTTTAAGG
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
36 3 0.07
37 41 0.93
ACGTcount: A:0.24, C:0.01, G:0.37, T:0.37
Consensus pattern (37 bp):
TTTAATGGTTAAGGGGACATGGGTTAGGGGTTAAGGG
Found at i:86049681 original size:22 final size:22
Alignment explanation
Indices: 86049656--86049798 Score: 64
Period size: 22 Copynumber: 6.6 Consensus size: 22
86049646 CATTTAGGGA
86049656 TTATGGGTTTAGGGGTTATGGT
1 TTATGGGTTTAGGGGTTATGGT
* * *
86049678 TTAT-GGTTTAAGGGCT-GGGAT
1 TTATGGGTTTAGGGGTTATGG-T
* * * *
86049699 GTA-AGGTTTAGGGTTTAGGGT
1 TTATGGGTTTAGGGGTTATGGT
* *
86049720 TTA-GGGCTTAAGGGTTTATGGT
1 TTATGGG-TTTAGGGGTTATGGT
* * * * *
86049742 TAATGGG-ATAGTGGATATGGG
1 TTATGGGTTTAGGGGTTATGGT
* *
86049763 TTATAGGG-TCAGGGGTTATGGG
1 TTAT-GGGTTTAGGGGTTATGGT
*
86049785 TTATAGGTTTAGGG
1 TTATGGGTTTAGGG
86049799 TTTAAAGGGA
Statistics
Matches: 89, Mismatches: 25, Indels: 14
0.70 0.20 0.11
Matches are distributed among these distances:
20 2 0.02
21 40 0.45
22 44 0.49
23 3 0.03
ACGTcount: A:0.20, C:0.02, G:0.41, T:0.38
Consensus pattern (22 bp):
TTATGGGTTTAGGGGTTATGGT
Found at i:86049715 original size:7 final size:7
Alignment explanation
Indices: 86049703--86049742 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
86049693 TGGGATGTAA
86049703 GGTTTAG
1 GGTTTAG
86049710 GGTTTAG
1 GGTTTAG
86049717 GGTTTAG
1 GGTTTAG
*
86049724 GGCTTAAG
1 GG-TTTAG
*
86049732 GGTTTAT
1 GGTTTAG
86049739 GGTT
1 GGTT
86049743 AATGGGATAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
7 23 0.79
8 6 0.21
ACGTcount: A:0.15, C:0.03, G:0.40, T:0.42
Consensus pattern (7 bp):
GGTTTAG
Found at i:86049744 original size:14 final size:14
Alignment explanation
Indices: 86049648--86049800 Score: 59
Period size: 14 Copynumber: 10.6 Consensus size: 14
86049638 GGATTATTCA
*
86049648 TTTAGGGATTATGGG
1 TTTAGGG-TTAAGGG
*
86049663 TTTAGGGGTT-ATGG
1 TTTA-GGGTTAAGGG
*
86049677 TTTATGGTTTAAGGG
1 TTTA-GGGTTAAGGG
*
86049692 -CT-GGGATGTAA-GG
1 TTTAGGG-T-TAAGGG
*
86049705 TTTAGGGTTTAGGG
1 TTTAGGGTTAAGGG
86049719 TTTAGGGCTTAAGGG
1 TTTAGGG-TTAAGGG
*
86049734 TTTATGGTTAATGGG
1 TTTAGGGTTAA-GGG
* * *
86049749 -ATAGTGGATATGGG
1 TTTAG-GGTTAAGGG
*
86049763 TTATAGGG-TCAGGG
1 TT-TAGGGTTAAGGG
*
86049777 GTTATGGGTTATA-GG
1 TTTA-GGGTTA-AGGG
86049792 TTTAGGGTT
1 TTTAGGGTT
86049801 TAAAGGGATA
Statistics
Matches: 102, Mismatches: 21, Indels: 31
0.66 0.14 0.20
Matches are distributed among these distances:
12 2 0.02
13 7 0.07
14 47 0.46
15 39 0.38
16 7 0.07
ACGTcount: A:0.20, C:0.02, G:0.40, T:0.39
Consensus pattern (14 bp):
TTTAGGGTTAAGGG
Found at i:86049913 original size:26 final size:26
Alignment explanation
Indices: 86049884--86049984 Score: 141
Period size: 26 Copynumber: 3.9 Consensus size: 26
86049874 AATAATTTCA
*
86049884 AATTTTAAAGATTTCAAA-TTTAGAAT
1 AATTTTCAAGATTTCAAATTTTA-AAT
* *
86049910 AATTTTCAAGAATTAAAATTTTAAAT
1 AATTTTCAAGATTTCAAATTTTAAAT
86049936 AATTTTCAAGATTTCAAATTTTAAAT
1 AATTTTCAAGATTTCAAATTTTAAAT
* *
86049962 AATTTTCAATATTTCAAAATTTA
1 AATTTTCAAGATTTCAAATTTTA
86049985 TCTAATTCTT
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
26 63 0.94
27 4 0.06
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.45
Consensus pattern (26 bp):
AATTTTCAAGATTTCAAATTTTAAAT
Found at i:86050641 original size:13 final size:13
Alignment explanation
Indices: 86050623--86050656 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
86050613 ACATTAAGTC
86050623 TTTTCCCCTAAAA
1 TTTTCCCCTAAAA
*
86050636 TTTTCCCTTAAAA
1 TTTTCCCCTAAAA
86050649 TTTTCCCC
1 TTTTCCCC
86050657 CTAACCCTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.24, C:0.32, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTTCCCCTAAAA
Found at i:86050760 original size:27 final size:28
Alignment explanation
Indices: 86050712--86050767 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
86050702 TCGCCAGACC
* *
86050712 CGACCATCTGTTGGATCGCCGTCG-ACT
1 CGACCATCTGCTGGATCACCGTCGCACT
86050739 CGACCATCTGCTGTG-TCACCGTCGCACT
1 CGACCATCTGCTG-GATCACCGTCGCACT
86050767 C
1 C
86050768 ATCTGCTGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 20 0.80
28 5 0.20
ACGTcount: A:0.14, C:0.38, G:0.23, T:0.25
Consensus pattern (28 bp):
CGACCATCTGCTGGATCACCGTCGCACT
Found at i:86053070 original size:67 final size:67
Alignment explanation
Indices: 86052962--86053099 Score: 276
Period size: 67 Copynumber: 2.1 Consensus size: 67
86052952 CTCAATTTAT
86052962 AATGGCAAACCACATAGACAACTAAGATTAGCCATTGGAGTAGCAACTAGCATGCTTTACATCAT
1 AATGGCAAACCACATAGACAACTAAGATTAGCCATTGGAGTAGCAACTAGCATGCTTTACATCAT
86053027 AA
66 AA
86053029 AATGGCAAACCACATAGACAACTAAGATTAGCCATTGGAGTAGCAACTAGCATGCTTTACATCAT
1 AATGGCAAACCACATAGACAACTAAGATTAGCCATTGGAGTAGCAACTAGCATGCTTTACATCAT
86053094 AA
66 AA
86053096 AATG
1 AATG
86053100 CAGGTGTATG
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 71 1.00
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (67 bp):
AATGGCAAACCACATAGACAACTAAGATTAGCCATTGGAGTAGCAACTAGCATGCTTTACATCAT
AA
Found at i:86053538 original size:24 final size:24
Alignment explanation
Indices: 86053511--86053557 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
86053501 ATTATTATTG
*
86053511 AAATATTCTCATACGTTTTATCAC
1 AAATATTATCATACGTTTTATCAC
* *
86053535 AAATATTATCGTTCGTTTTATCA
1 AAATATTATCATACGTTTTATCA
86053558 TTTAAGTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.32, C:0.17, G:0.06, T:0.45
Consensus pattern (24 bp):
AAATATTATCATACGTTTTATCAC
Found at i:86053787 original size:15 final size:14
Alignment explanation
Indices: 86053771--86053891 Score: 51
Period size: 14 Copynumber: 9.0 Consensus size: 14
86053761 TTAATCTTAT
86053771 TTTAATTAATATAA
1 TTTAATTAATATAA
* *
86053785 TTTGGATTAAT-TTA
1 TTT-AATTAATATAA
*
86053799 TTT-A--AATATTA
1 TTTAATTAATATAA
86053810 TTTAATTAATAT-A
1 TTTAATTAATATAA
* *
86053823 CTT--TTGAT-TAA
1 TTTAATTAATATAA
* *
86053834 TTTATTTAAATATTA
1 TTTAATT-AATATAA
*
86053849 TTAAATTAATATAA
1 TTTAATTAATATAA
* * *
86053863 TTTTTATAAATATGA
1 -TTTAATTAATATAA
*
86053878 TTTAATTAAAATAA
1 TTTAATTAATATAA
86053892 ATTTTTTTCC
Statistics
Matches: 78, Mismatches: 18, Indels: 22
0.66 0.15 0.19
Matches are distributed among these distances:
10 4 0.05
11 13 0.17
12 2 0.03
13 5 0.06
14 31 0.40
15 23 0.29
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (14 bp):
TTTAATTAATATAA
Found at i:86053814 original size:39 final size:39
Alignment explanation
Indices: 86053771--86053865 Score: 163
Period size: 39 Copynumber: 2.4 Consensus size: 39
86053761 TTAATCTTAT
86053771 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
* *
86053810 TTTAATTAATATACTTTTGATTAATTTATTTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
*
86053849 TTAAATTAATATAATTT
1 TTTAATTAATATAATTT
86053866 TTATAAATAT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 52 1.00
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (39 bp):
TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
Found at i:86053873 original size:29 final size:28
Alignment explanation
Indices: 86053831--86053898 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 28
86053821 TACTTTTGAT
* *
86053831 TAATTTATTTAAATATTATTAAATTAATA
1 TAATTT-TTTAAATATGATTAAATTAAAA
*
86053860 TAATTTTTATAAATATGATTTAATTAAAA
1 TAATTTTT-TAAATATGATTAAATTAAAA
86053889 TAAATTTTTT
1 T-AATTTTTT
86053899 TCCATCTGAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
28 2 0.06
29 25 0.74
30 7 0.21
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (28 bp):
TAATTTTTTAAATATGATTAAATTAAAA
Found at i:86054185 original size:9 final size:9
Alignment explanation
Indices: 86054168--86054245 Score: 111
Period size: 9 Copynumber: 8.7 Consensus size: 9
86054158 TATATACTTG
86054168 AACTTACAT
1 AACTTACAT
*
86054177 AACTCACAT
1 AACTTACAT
*
86054186 AAGTTACAT
1 AACTTACAT
*
86054195 AACTTATAT
1 AACTTACAT
86054204 AACTTACAT
1 AACTTACAT
*
86054213 AACTCACAT
1 AACTTACAT
*
86054222 AACTTACAG
1 AACTTACAT
86054231 AACTTACAT
1 AACTTACAT
86054240 AACTTA
1 AACTTA
86054246 TTTATACTTA
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 59 1.00
ACGTcount: A:0.45, C:0.22, G:0.03, T:0.31
Consensus pattern (9 bp):
AACTTACAT
Found at i:86060004 original size:21 final size:20
Alignment explanation
Indices: 86059981--86060059 Score: 69
Period size: 22 Copynumber: 4.1 Consensus size: 20
86059971 ATGTATATGG
86059981 TAAAATAAATAATATATATA
1 TAAAATAAATAATATATATA
* *
86060001 GTAAAAATATATAACATATA-A
1 -T-AAAATAAATAATATATATA
*
86060022 TAAAAT--ATAA-ACATA-A
1 TAAAATAAATAATATATATA
*
86060038 TAGAATAAATAATATATATA
1 TAAAATAAATAATATATATA
86060058 TA
1 TA
86060060 TTAAAAATAT
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
16 10 0.21
17 4 0.08
18 4 0.08
19 9 0.19
20 4 0.08
21 2 0.04
22 15 0.31
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (20 bp):
TAAAATAAATAATATATATA
Found at i:86060036 original size:18 final size:19
Alignment explanation
Indices: 86059981--86060090 Score: 84
Period size: 19 Copynumber: 5.6 Consensus size: 19
86059971 ATGTATATGG
* *
86059981 TAAAATAAATAATATATATA
1 TAAAATATATAACATATA-A
86060001 GTAAAAATATATAACATATAA
1 -T-AAAATATATAACATATAA
86060022 TAAAATATA-AACATAATAGA
1 TAAAATATATAACAT-ATA-A
* *
86060042 -ATAAATA-ATATATATATAT
1 TA-AAATATATA-ACATATAA
86060061 TAAAA-ATATAACATATAA
1 TAAAATATATAACATATAA
*
86060079 TAAAATTTATAA
1 TAAAATATATAA
86060091 AGATGTATAT
Statistics
Matches: 73, Mismatches: 7, Indels: 20
0.73 0.07 0.20
Matches are distributed among these distances:
18 17 0.23
19 24 0.33
20 12 0.16
21 5 0.07
22 15 0.21
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.33
Consensus pattern (19 bp):
TAAAATATATAACATATAA
Found at i:86060083 original size:17 final size:17
Alignment explanation
Indices: 86060009--86060084 Score: 64
Period size: 20 Copynumber: 4.1 Consensus size: 17
86059999 TAGTAAAAAT
86060009 ATATAACATATAATAAA
1 ATATAACATATAATAAA
86060026 ATATAAACATAATAGA-ATAA
1 ATAT-AACAT-ATA-ATA-AA
* *
86060046 ATAATATATATATATTAAAA
1 AT-ATA-ACATATAAT-AAA
86060066 ATATAACATATAATAAA
1 ATATAACATATAATAAA
86060083 AT
1 AT
86060085 TTATAAAGAT
Statistics
Matches: 47, Mismatches: 4, Indels: 16
0.70 0.06 0.24
Matches are distributed among these distances:
17 9 0.19
18 12 0.26
19 7 0.15
20 13 0.28
21 6 0.13
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.32
Consensus pattern (17 bp):
ATATAACATATAATAAA
Found at i:86060115 original size:27 final size:28
Alignment explanation
Indices: 86060046--86060115 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 28
86060036 AATAGAATAA
* *
86060046 ATAATATATATATATTAAAAATATAACAT
1 ATAATA-ATATATATTATAAAGATAACAT
**
86060075 ATAATAA-A-AT-TTATAAAGAT-GTAT
1 ATAATAATATATATTATAAAGATAACAT
86060099 ATAATAATATATATTAT
1 ATAATAATATATATTAT
86060116 TTTAGATAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
24 9 0.26
25 9 0.26
26 4 0.12
27 5 0.15
28 1 0.03
29 6 0.18
ACGTcount: A:0.56, C:0.01, G:0.03, T:0.40
Consensus pattern (28 bp):
ATAATAATATATATTATAAAGATAACAT
Found at i:86061744 original size:13 final size:14
Alignment explanation
Indices: 86061728--86061756 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
86061718 TTACAAATAT
86061728 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
86061741 TTATAATGGTTTAA
1 TTATAATGGTTTAA
86061755 TT
1 TT
86061757 CGTCATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:86062222 original size:21 final size:21
Alignment explanation
Indices: 86062198--86062252 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
86062188 CTGCAGCAAT
*
86062198 GAGGCAGGCAGCGGCAGCAGC
1 GAGGCAGGCAGAGGCAGCAGC
* *
86062219 GAGGGAGGCAGAGGTAGCAGC
1 GAGGCAGGCAGAGGCAGCAGC
86062240 GATGGCA-GCAGAG
1 GA-GGCAGGCAGAG
86062253 CAGAGCAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 26 0.90
22 3 0.10
ACGTcount: A:0.27, C:0.20, G:0.49, T:0.04
Consensus pattern (21 bp):
GAGGCAGGCAGAGGCAGCAGC
Found at i:86062515 original size:33 final size:33
Alignment explanation
Indices: 86062473--86062554 Score: 114
Period size: 31 Copynumber: 2.5 Consensus size: 33
86062463 TTAGAATTAA
*
86062473 TGTTTTTGGTTGTATTTATTAAGCTAAATTTGC
1 TGTTTTTGGTTGCATTTATTAAGCTAAATTTGC
* *
86062506 TGTTTTTGGTTGCA-TT-TTATGCTATATTTGC
1 TGTTTTTGGTTGCATTTATTAAGCTAAATTTGC
*
86062537 TGTTTTTGGTTGGATTTA
1 TGTTTTTGGTTGCATTTA
86062555 ATGCAGGAAG
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
31 26 0.60
32 4 0.09
33 13 0.30
ACGTcount: A:0.16, C:0.06, G:0.21, T:0.57
Consensus pattern (33 bp):
TGTTTTTGGTTGCATTTATTAAGCTAAATTTGC
Found at i:86063298 original size:19 final size:19
Alignment explanation
Indices: 86063253--86063299 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
86063243 ATCAAATTAA
*
86063253 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
86063272 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
86063291 AATAAAAAT
1 AATAAAAAT
86063300 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:86068427 original size:20 final size:21
Alignment explanation
Indices: 86068402--86068440 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
86068392 TAATATATCA
86068402 AATG-TTTTTTATTTATTTTT
1 AATGTTTTTTTATTTATTTTT
86068422 AATGTTTTTTTATTTATTT
1 AATGTTTTTTTATTTATTT
86068441 ATCAATGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (21 bp):
AATGTTTTTTTATTTATTTTT
Found at i:86068455 original size:25 final size:21
Alignment explanation
Indices: 86068402--86068461 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
86068392 TAATATATCA
*
86068402 AATG-TTTTTTATTTATTTTT
1 AATGTTTTTTTATTTATTTTC
86068422 AATGTTTTTTTATTTATTTATC
1 AATGTTTTTTTATTTATTT-TC
*
86068444 AATGATTATTTTACTTTA
1 AATG-TTTTTTTA-TTTA
86068462 CGAATTCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.12
21 14 0.41
22 5 0.15
23 7 0.21
24 4 0.12
ACGTcount: A:0.25, C:0.03, G:0.05, T:0.67
Consensus pattern (21 bp):
AATGTTTTTTTATTTATTTTC
Found at i:86068832 original size:24 final size:24
Alignment explanation
Indices: 86068804--86068852 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
86068794 CCAAAATAAC
86068804 AATTAATTTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
86068828 AATTAATTTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
86068852 A
1 A
86068853 TAAATATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (24 bp):
AATTAATTTTTATATAAACTTTTA
Found at i:86068855 original size:11 final size:12
Alignment explanation
Indices: 86068811--86068856 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
86068801 AACAATTAAT
86068811 TTTTATATAAAC
1 TTTTATATAAAC
* * *
86068823 TTTTAAATTAAT
1 TTTTATATAAAC
86068835 TTTTATATAAAC
1 TTTTATATAAAC
86068847 TTTTA-ATAAA
1 TTTTATATAAA
86068857 TATATTAGTT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
11 5 0.18
12 23 0.82
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTTATATAAAC
Found at i:86069525 original size:41 final size:41
Alignment explanation
Indices: 86069476--86069685 Score: 289
Period size: 41 Copynumber: 5.1 Consensus size: 41
86069466 CTTTTAGTGC
* *
86069476 CGTTTTACCAAAAGCGCCGCTAATGCTCTGGTCTTTAGAGG
1 CGTTTCACCAAAAGCGCCGCTGATGCTCTGGTCTTTAGAGG
* * * *
86069517 TGTTTTACCAAAATCGCCGCTGATGCTCTGGTCTTTAGCGG
1 CGTTTCACCAAAAGCGCCGCTGATGCTCTGGTCTTTAGAGG
86069558 CGTTTCACCAAAAGCGCCGCTGATGCTCTGGTCTTTA-ACGG
1 CGTTTCACCAAAAGCGCCGCTGATGCTCTGGTCTTTAGA-GG
**
86069599 CGTTTCACCAAAAGCGTTGCTGATGCTCTGGTCTTTA-ACGG
1 CGTTTCACCAAAAGCGCCGCTGATGCTCTGGTCTTTAGA-GG
* * *
86069640 CGTTTCACCAAAAGCGGCGCTAATGCTCTGGTCTTTAGCGG
1 CGTTTCACCAAAAGCGCCGCTGATGCTCTGGTCTTTAGAGG
86069681 CGTTT
1 CGTTT
86069686 TTTGTTCAGT
Statistics
Matches: 153, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
41 153 1.00
ACGTcount: A:0.19, C:0.26, G:0.25, T:0.30
Consensus pattern (41 bp):
CGTTTCACCAAAAGCGCCGCTGATGCTCTGGTCTTTAGAGG
Found at i:86071900 original size:10 final size:11
Alignment explanation
Indices: 86071885--86071953 Score: 67
Period size: 11 Copynumber: 6.7 Consensus size: 11
86071875 ATTTTGATAT
*
86071885 ACATGATTTG-
1 ACATGATATGC
86071895 ACATGATATGC
1 ACATGATATGC
86071906 ACATGATATG-
1 ACATGATATGC
*
86071916 -TATGATATGC
1 ACATGATATGC
*
86071926 ACACGATATG-
1 ACATGATATGC
*
86071936 -TATGATATGC
1 ACATGATATGC
86071946 ACATGATA
1 ACATGATA
86071954 AATTCATATA
Statistics
Matches: 47, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
9 15 0.32
10 9 0.19
11 23 0.49
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:86071922 original size:20 final size:20
Alignment explanation
Indices: 86071897--86071953 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
86071887 ATGATTTGAC
86071897 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
*
86071917 ATGATATGCACACGATATGT
1 ATGATATGCACATGATATGT
86071937 ATGATATGCACATGATA
1 ATGATATGCACATGATA
86071954 AATTCATATA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (20 bp):
ATGATATGCACATGATATGT
Found at i:86072036 original size:25 final size:25
Alignment explanation
Indices: 86072002--86072067 Score: 123
Period size: 25 Copynumber: 2.6 Consensus size: 25
86071992 AGGAAGTGCA
86072002 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
86072027 AAAAGGGCTTTGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
86072052 AAAAGGGCTTTGCCCC
1 AAAAGGGCTTTGCCCC
86072068 GGTTATTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:86072326 original size:31 final size:31
Alignment explanation
Indices: 86072291--86072374 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
86072281 CATTTACAGT
*
86072291 AAAGGCTTTGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * *
86072322 AAAGGCTTCGGCCTAGTGACATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
86072353 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
86072375 CTGAGATTGA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 4 0.09
31 43 0.91
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:86076715 original size:25 final size:25
Alignment explanation
Indices: 86076687--86076777 Score: 103
Period size: 25 Copynumber: 3.7 Consensus size: 25
86076677 TTCTTGTCAT
*
86076687 GTATGCTCATACGAGCTATGAGTCG
1 GTATGCTCATACGAGCTATGAATCG
**
86076712 GTATGCTTTTACGAGCTATGAATCG
1 GTATGCTCATACGAGCTATGAATCG
** *
86076737 GTATGCTTTTACGAGCTGT-AATCG
1 GTATGCTCATACGAGCTATGAATCG
**
86076761 GTAAACTCATACGAGCT
1 GTATGCTCATACGAGCT
86076778 GAGTAACGGT
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
24 18 0.31
25 40 0.69
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (25 bp):
GTATGCTCATACGAGCTATGAATCG
Found at i:86076794 original size:25 final size:24
Alignment explanation
Indices: 86076746--86076796 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
86076736 GGTATGCTTT
86076746 TACGAGCTGTAATCGGTAAACTCA
1 TACGAGCTGTAATCGGTAAACTCA
*
86076770 TACGAGCTGAGTAA-CGGTAAGCTCA
1 TACGAGCT--GTAATCGGTAAACTCA
86076795 TA
1 TA
86076797 TGAGTTGTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 8 0.33
25 12 0.50
26 4 0.17
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.24
Consensus pattern (24 bp):
TACGAGCTGTAATCGGTAAACTCA
Found at i:86086970 original size:22 final size:22
Alignment explanation
Indices: 86086942--86087037 Score: 95
Period size: 23 Copynumber: 4.2 Consensus size: 22
86086932 GTCATGGTCG
*
86086942 GTAAGCTCTTCCGAGCTG-AACA
1 GTAAGCTCTT-TGAGCTGAAACA
86086964 GTAAGCTCTATTGAGCTGAAACA
1 GTAAGCTCT-TTGAGCTGAAACA
**
86086987 GTAAGCTCCAATGAGCTGAAACA
1 GTAAGCT-CTTTGAGCTGAAACA
** *
86087010 GTAAGCTCCAATGAGCTGAAATA
1 GTAAGCT-CTTTGAGCTGAAACA
86087033 GTAAG
1 GTAAG
86087038 TAATTACGAG
Statistics
Matches: 67, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
22 15 0.22
23 51 0.76
24 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (22 bp):
GTAAGCTCTTTGAGCTGAAACA
Found at i:86086990 original size:23 final size:23
Alignment explanation
Indices: 86086954--86087037 Score: 134
Period size: 23 Copynumber: 3.7 Consensus size: 23
86086944 AAGCTCTTCC
* *
86086954 GAGCTG-AACAGTAAGCTCTATT
1 GAGCTGAAACAGTAAGCTCCAAT
86086976 GAGCTGAAACAGTAAGCTCCAAT
1 GAGCTGAAACAGTAAGCTCCAAT
86086999 GAGCTGAAACAGTAAGCTCCAAT
1 GAGCTGAAACAGTAAGCTCCAAT
*
86087022 GAGCTGAAATAGTAAG
1 GAGCTGAAACAGTAAG
86087038 TAATTACGAG
Statistics
Matches: 58, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
22 6 0.10
23 52 0.90
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (23 bp):
GAGCTGAAACAGTAAGCTCCAAT
Found at i:86097399 original size:26 final size:27
Alignment explanation
Indices: 86097369--86097436 Score: 84
Period size: 26 Copynumber: 2.5 Consensus size: 27
86097359 GGCATTACCA
*
86097369 TTAATGTGGAAGTCCATCATGACGATC
1 TTAATGTGGAAGTCCATCAGGACGATC
* * *
86097396 -TAATATGGAATTCTATCAGGACGATC
1 TTAATGTGGAAGTCCATCAGGACGATC
86097422 TTAACTGTGGAAGTC
1 TTAA-TGTGGAAGTC
86097437 TGCTAGGACT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
26 22 0.67
27 3 0.09
28 8 0.24
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (27 bp):
TTAATGTGGAAGTCCATCAGGACGATC
Found at i:86099973 original size:6 final size:6
Alignment explanation
Indices: 86099957--86099990 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
86099947 TAGGTTTCCA
* *
86099957 AAAATG GAAATG AAAATG AAAATT AAAATG AAAA
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAA
86099991 CTTGCAATCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.68, C:0.00, G:0.15, T:0.18
Consensus pattern (6 bp):
AAAATG
Found at i:86102409 original size:80 final size:80
Alignment explanation
Indices: 86102270--86102428 Score: 248
Period size: 80 Copynumber: 2.0 Consensus size: 80
86102260 CTACGAACAT
* **
86102270 TTCAATGTTGCTCCAAAATGGTTGTGGAACACCCATTTTCCAACGGAAGAAATTGGCAAGAAAGC
1 TTCAATGTTGCTCCAAAATGGCTGTGGAACACCCATTTTCCAACGGAAGAAATCAGCAAGAAAGC
86102335 AAGAGAATTTAGAAC
66 AAGAGAATTTAGAAC
* * *
86102350 TTCAATGTTGCTCCAAAATGGCTGAT-GAACACCCCTTTTCCAAGGGAAGAAATCAGCAAGAGAG
1 TTCAATGTTGCTCCAAAATGGCTG-TGGAACACCCATTTTCCAACGGAAGAAATCAGCAAGAAAG
86102414 CAAGAGAATTTAGAA
65 CAAGAGAATTTAGAA
86102429 TGGGAAAGAA
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
80 71 0.99
81 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.23
Consensus pattern (80 bp):
TTCAATGTTGCTCCAAAATGGCTGTGGAACACCCATTTTCCAACGGAAGAAATCAGCAAGAAAGC
AAGAGAATTTAGAAC
Found at i:86105425 original size:37 final size:37
Alignment explanation
Indices: 86105375--86105502 Score: 238
Period size: 37 Copynumber: 3.4 Consensus size: 37
86105365 TTATTACGAA
86105375 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
86105412 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
86105449 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
86105486 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
86105503 TTTCCAAGTT
Statistics
Matches: 89, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
37 84 0.94
38 5 0.06
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:86105619 original size:49 final size:49
Alignment explanation
Indices: 86105551--86106112 Score: 989
Period size: 49 Copynumber: 11.5 Consensus size: 49
86105541 ATTCATATTA
* * *
86105551 GCCATTCGGCTTTACCACATATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
86105600 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
86105649 GCCATTAGGCCTTATCACATATGTATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
**
86105698 GCCATTAGGCCTTATCACATATATATACACTTTCACGCTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
* *
86105747 GCCATTAGGCCTTATCACATATGTATACACTTTCACATTCAGCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
**
86105796 GCCATTAGGCCTTATCACATATATATACACTTTCACGCTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
86105845 GCCATTAGGCCTTATCACATATGTATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
86105894 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
86105943 GCCATTAGGCCTTATCACATATGTATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
86105992 GCCATTAGGCCTTATCACATATGTATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
**
86106041 GCCATTAGGCCTTATCACATATATATACACTTTCACGCTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
86106090 GCCATTAGGCCTTATCACATATA
1 GCCATTAGGCCTTATCACATATA
86106113 CTATTATGTA
Statistics
Matches: 490, Mismatches: 23, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 490 1.00
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.32
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
Found at i:86111666 original size:201 final size:200
Alignment explanation
Indices: 86111264--86111642 Score: 508
Period size: 201 Copynumber: 1.9 Consensus size: 200
86111254 GTCTTTACAG
* *
86111264 TTTACATCTACCATAGTTACAGAATTCAATCTAATGGAAGTGAGTAGAATCATTTGAATATTCAA
1 TTTACATCTACCATAGCTACAGAATTCAATCTAATGGAAGTGAGTAGAATCATTTGAATATCCAA
* * * *
86111329 ACTGATTCTATAGGTCCGCCAAGAATAAGTCAACAGGCAACTGTAAGAAATTCAGAGTATATATG
66 ACTCATTCTATAGGTCCACCAAGAATAAGTCAACAGGCAACTGTAAGAAAGTCAGAGTATATAGG
* * * * *
86111394 ACAGTCCGCCAAGTTCATGTTGGGGACAATATGAGAGTATTCCTATATACCACTAAAATGCGTGA
131 AAAGCCCGCAAAGTTCATGTTGGGGACAATATGAAAGCATTCCTATATACCACTAAAATGCGTGA
86111459 ATGGT
196 ATGGT
* * * ** *
86111464 TTTATATCTACCGTAGCTATAGAATTCAATCTAATGGAAGTGAGTAGAATTGTTTGCATATCCAA
1 TTTACATCTACCATAGCTACAGAATTCAATCTAATGGAAGTGAGTAGAATCATTTGAATATCCAA
* * * * * * * *
86111529 ACCTCATTCTATTGGTTCACCAAGAATAAGTCTACTGGCAATTGTAAGGAAGTCATATTATATAG
66 A-CTCATTCTATAGGTCCACCAAGAATAAGTCAACAGGCAACTGTAAGAAAGTCAGAGTATATAG
86111594 GAAAGCCCGCAAAGGTT-ATGTTGGGGACAATATGAAAGCATTCCTATAT
130 GAAAGCCCGCAAA-GTTCATGTTGGGGACAATATGAAAGCATTCCTATAT
86111643 CTTATTGGAA
Statistics
Matches: 152, Mismatches: 25, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
200 58 0.38
201 91 0.60
202 3 0.02
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (200 bp):
TTTACATCTACCATAGCTACAGAATTCAATCTAATGGAAGTGAGTAGAATCATTTGAATATCCAA
ACTCATTCTATAGGTCCACCAAGAATAAGTCAACAGGCAACTGTAAGAAAGTCAGAGTATATAGG
AAAGCCCGCAAAGTTCATGTTGGGGACAATATGAAAGCATTCCTATATACCACTAAAATGCGTGA
ATGGT
Found at i:86122598 original size:46 final size:46
Alignment explanation
Indices: 86122542--86122757 Score: 197
Period size: 46 Copynumber: 4.6 Consensus size: 46
86122532 TATGTATGCT
*
86122542 AGTGTAAGACATGTCTGGGACATGCGTCAGCCATAG-TATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATAGATATGA-AGCC
* * * * **
86122588 AGTGTAAGACATGTCTAGGACATGCATCGGTCTC-TTGATATTTAAGTT
1 AGTGTAAGACATGTCTGGGACATGCATCAG-C-CATAGATA-TGAAGCC
* * * *
86122636 AGTGTAAGACATGTCTGGGACATGGCATCAG-CATTGAAACGAGAGCT
1 AGTGTAAGACATGTCTGGGACAT-GCATCAGCCATAGATATGA-AGCC
* * *
86122683 AGTGTAAGACATGTCTGGGACATGCATCGGCC-TTGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATAGATATG-AAGCC
* *
86122729 AATGTAAGACATGTCTGGGGCATGCATCA
1 AGTGTAAGACATGTCTGGGACATGCATCA
86122758 ATTACGAGAT
Statistics
Matches: 141, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
46 70 0.50
47 36 0.26
48 27 0.19
49 8 0.06
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATAGATATGAAGCC
Found at i:86122704 original size:95 final size:92
Alignment explanation
Indices: 86122533--86122807 Score: 292
Period size: 95 Copynumber: 3.0 Consensus size: 92
86122523 AATGGGTGAT
* * * *
86122533 ATGTATGCTAGTGTAAGACATGTCTGGGACATGCGTCAGCCATAGTATGAGAGCCAGTGTAAGAC
1 ATGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATAGAACGAGAGCCAGTGTAAGAC
*
86122598 ATGTCTAGGACATGCATCGGTCTCTTGAT
66 ATGTCTAGGACATGCATCGG-C-CTTGAG
* * * *
86122627 ATTTAAGTTAGTGTAAGACATGTCTGGGACATGGCATCAG-CATTGAAACGAGAGCTAGTGTAAG
1 ATGTAAGCTAGTGTAAGACATGTCTGGGACAT-GCATCAGCCATAG-AACGAGAGCCAGTGTAAG
*
86122691 ACATGTCTGGGACATGCATCGGCCTTGAG
64 ACATGTCTAGGACATGCATCGGCCTTGAG
* * * *
86122720 ATGTAAGCCAATGTAAGACATGTCTGGGGCATGCATCA---ATTACG-A-GATGTGCCAGTGTAA
1 ATGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCA-TA-GAACGA-GAGCCAGTGTAA
*
86122780 GACCATGTCTAGGACATGGCGTCGGCCT
63 GA-CATGTCTAGGACAT-GCATCGGCCT
86122808 CGATTTCGAT
Statistics
Matches: 154, Mismatches: 20, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
89 2 0.01
90 14 0.09
91 14 0.09
92 16 0.10
93 32 0.21
94 34 0.22
95 42 0.27
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (92 bp):
ATGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATAGAACGAGAGCCAGTGTAAGAC
ATGTCTAGGACATGCATCGGCCTTGAG
Found at i:86122767 original size:46 final size:43
Alignment explanation
Indices: 86122638--86122797 Score: 126
Period size: 46 Copynumber: 3.5 Consensus size: 43
86122628 TTTAAGTTAG
* * * *
86122638 TGTAAGACATGTCTGGGACATGGCATCAGCATTGAAACGA-GAGCTAG
1 TGTAAGACATGTCTGGGACAT-GCATC-GAATTG--A-GATGTGCCAA
**
86122685 TGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATGTAAGCCAA
1 TGTAAGACATGTCTGGGACATGCATC-GAATTGAGATGT--GCCAA
* *
86122731 TGTAAGACATGTCTGGGGCATGCATC-AATTACGAGATGTGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGAATT--GAGATGTGCCAA
*
86122775 TGTAAGACCATGTCTAGGACATG
1 TGTAAGA-CATGTCTGGGACATG
86122798 GCGTCGGCCT
Statistics
Matches: 96, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
43 2 0.02
44 15 0.16
45 13 0.14
46 45 0.47
47 21 0.22
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (43 bp):
TGTAAGACATGTCTGGGACATGCATCGAATTGAGATGTGCCAA
Found at i:86122828 original size:93 final size:90
Alignment explanation
Indices: 86122542--86122849 Score: 281
Period size: 93 Copynumber: 3.3 Consensus size: 90
86122532 TATGTATGCT
* *
86122542 AGTGTAAGACATGTCTGGGACAT-GCGTCAGCCA-TAGTATGAGAGCCAGTGTAAGACATGTCTA
1 AGTGTAAGACATGTCTGGGACATGGCATCA--CATTA--ACGAGAGCCAGTGTAAGACATGTCTA
* *
86122605 GGACATGCATCGGTCTCTTGATATTTA-AGTT
62 GGACATGCATCGG-C-CTTGAT-TTGATAGTC
* *
86122636 AGTGTAAGACATGTCTGGGACATGGCATCAGCATTGAAACGAGAGCTAGTGTAAGACATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGGCATCA-CATT--AACGAGAGCCAGTGTAAGACATGTCTAG
** *
86122701 GACATGCATCGGCCTTGAGATG-TAAGCC
63 GACATGCATCGGCCTTGATTTGAT-AGTC
* *
86122729 AATGTAAGACATGTCTGGGGCAT-GCATCA-ATT-ACGAGATGTGCCAGTGTAAGACCATGTCTA
1 AGTGTAAGACATGTCTGGGACATGGCATCACATTAACGAGA---GCCAGTGTAAGA-CATGTCTA
* *
86122791 GGACATGGCGTCGGCCTCGATTTCGATAGTC
62 GGACAT-GCATCGGCCTTGATTT-GATAGTC
86122822 AGTGTAAGACCATGTCT-GGACATGGCAT
1 AGTGTAAGA-CATGTCTGGGACATGGCAT
86122850 TGCCTTGACG
Statistics
Matches: 178, Mismatches: 21, Indels: 30
0.78 0.09 0.13
Matches are distributed among these distances:
87 6 0.03
90 14 0.08
91 13 0.07
92 19 0.11
93 45 0.25
94 38 0.21
95 42 0.24
97 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (90 bp):
AGTGTAAGACATGTCTGGGACATGGCATCACATTAACGAGAGCCAGTGTAAGACATGTCTAGGAC
ATGCATCGGCCTTGATTTGATAGTC
Found at i:86122880 original size:95 final size:92
Alignment explanation
Indices: 86122542--86122877 Score: 275
Period size: 95 Copynumber: 3.6 Consensus size: 92
86122532 TATGTATGCT
* *
86122542 AGTGTAAGACATGTCTGGGACATGCGTCA--GCCATAGTATG-A-GAGCCAGTGTAAGACATGTC
1 AGTGTAAGACATGTCTGGGACATG-G-CATTG-CATTG-ACGAATGAGCCAGTGTAAGACATGTC
* *
86122603 TAGGACATGCATCGGTCTCTTGATATTTA-AGTT
62 TAGGACATGCATCGG-C-CTTGAT-TTGATAGTC
* *
86122636 AGTGTAAGACATGTCTGGGACATGGCATCAGCATTGAAACG-A-GAGCTAGTGTAAGACATGTCT
1 AGTGTAAGACATGTCTGGGACATGGCAT-TGCATTG--ACGAATGAGCCAGTGTAAGACATGTCT
* ** *
86122699 GGGACATGCATCGGCCTTGAGATG-TAAGCC
63 AGGACATGCATCGGCCTTGATTTGAT-AGTC
* * *
86122729 AATGTAAGACATGTCTGGGGCAT-GCA-T-CAATT-ACGAGATGTGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACATGTCTGGGACATGGCATTGC-ATTGACGA-ATGAGCCAGTGTAAGA-CATGTCT
* *
86122790 AGGACATGGCGTCGGCCTCGATTTCGATAGTC
63 AGGACAT-GCATCGGCCTTGATTT-GATAGTC
* *
86122822 AGTGTAAGACCATGTCT-GGACATGGCATTGCCTTGACGAATGAGCTAGTGTAAGAC
1 AGTGTAAGA-CATGTCTGGGACATGGCATTGCATTGACGAATGAGCCAGTGTAAGAC
86122878 CATATCTGGA
Statistics
Matches: 197, Mismatches: 26, Indels: 38
0.75 0.10 0.15
Matches are distributed among these distances:
87 3 0.02
89 2 0.01
90 15 0.08
91 13 0.07
92 18 0.09
93 46 0.23
94 41 0.21
95 54 0.27
96 5 0.03
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGGCATTGCATTGACGAATGAGCCAGTGTAAGACATGTCTAGG
ACATGCATCGGCCTTGATTTGATAGTC
Found at i:86130345 original size:190 final size:190
Alignment explanation
Indices: 86130010--86130389 Score: 625
Period size: 190 Copynumber: 2.0 Consensus size: 190
86130000 ATCAAGAGTT
*
86130010 ACAAAATTCGGGCCTAGACCGAGAAAAAGCAAAGCAAGTGGACTAAGCCGAGCTAGTCGACTATA
1 ACAAAATCCGGGCCTAGACCGAGAAAAAGCAAAGCAAGTGGACTAAGCCGAGCTAGTCGACTATA
* *
86130075 TTTTGTAATCCGAGGTAAGTTGTATGTTAATAACGCAACTATATCTTTAAATGTGTATTTGAGTT
66 TTTTGTAATCCGAGGGAAGTTGGATGTTAATAACGCAACTATATCTTTAAATGTGTATTTGAGTT
* *
86130140 GATATGGCGTAAATTGTCTTGGTATTGGAATATGAGAATACATGTTGAGAAACTTACGTA
131 GATATAGCATAAATTGTCTTGGTATTGGAATATGAGAATACATGTTGAGAAACTTACGTA
* * * *
86130200 ACAAAATCCGGGCCTAGATCGGGGAAAAGCGAAGCAAGTGGACTAAGCCGAGCTAGTCGACTATA
1 ACAAAATCCGGGCCTAGACCGAGAAAAAGCAAAGCAAGTGGACTAAGCCGAGCTAGTCGACTATA
* * *
86130265 TTTTGTAATCTGAGGGAAGTTGGATGTTAATAATGCACCTATATCTTTAAATGTGTATTTGAGTT
66 TTTTGTAATCCGAGGGAAGTTGGATGTTAATAACGCAACTATATCTTTAAATGTGTATTTGAGTT
* * *
86130330 GATCTAGCATAAATTGTCTTGGTTTTGGAATATGAGAATGCATGTTGAGAAACTTACGTA
131 GATATAGCATAAATTGTCTTGGTATTGGAATATGAGAATACATGTTGAGAAACTTACGTA
86130390 GTAAAGACTT
Statistics
Matches: 175, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
190 175 1.00
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (190 bp):
ACAAAATCCGGGCCTAGACCGAGAAAAAGCAAAGCAAGTGGACTAAGCCGAGCTAGTCGACTATA
TTTTGTAATCCGAGGGAAGTTGGATGTTAATAACGCAACTATATCTTTAAATGTGTATTTGAGTT
GATATAGCATAAATTGTCTTGGTATTGGAATATGAGAATACATGTTGAGAAACTTACGTA
Found at i:86130636 original size:95 final size:92
Alignment explanation
Indices: 86130501--86130675 Score: 260
Period size: 95 Copynumber: 1.9 Consensus size: 92
86130491 CCACAGTATG
* * * * *
86130501 AGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGATTTTTAAGCTAGTGTAAGACA
1 AGAGCCAGTATAAGACATGTCTGGGACATGCATCGACCTCGAGA--TGTAAGCCAGTGTAAGACA
86130566 TGTCTGGGACATGGCATTGGCATTGAGACA
64 TGTCTGGGACAT-GCATTGGCATTGAGACA
*
86130596 AGAGCTAGTATAAGACATGTCTGGGACATGCATCGACCTCGAGATGTAAGCCAGTGTAAGACATG
1 AGAGCCAGTATAAGACATGTCTGGGACATGCATCGACCTCGAGATGTAAGCCAGTGTAAGACATG
*
86130661 TCTGGGGCATGCATT
66 TCTGGGACATGCATT
86130676 AGTTACGAGA
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
92 5 0.07
93 28 0.38
95 40 0.55
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (92 bp):
AGAGCCAGTATAAGACATGTCTGGGACATGCATCGACCTCGAGATGTAAGCCAGTGTAAGACATG
TCTGGGACATGCATTGGCATTGAGACA
Found at i:86130673 original size:46 final size:46
Alignment explanation
Indices: 86130461--86130716 Score: 211
Period size: 46 Copynumber: 5.5 Consensus size: 46
86130451 TATGTGTGCT
* *
86130461 AGTGTAAGACTTGTCTGGGACATGCATC-AGCCAC-AGTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGA-CCTCGAG-ATGTA-AGCC
* * * *
86130507 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGATTTTTAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGA--TGTAAGCC
* * * * ** *
86130555 AGTGTAAGACATGTCTGGGACATGGCATTGGCATTGAGA-CAAGAGCT
1 AGTGTAAGACATGTCTGGGACAT-GCATCGACCTCGAGATGTA-AGCC
*
86130602 AGTATAAGACATGTCTGGGACATGCATCGACCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGTAAGCC
* * ** *
86130648 AGTGTAAGACATGTCTGGGGCATGCAT-TAGTTACGAGATGT--GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCT-CGAGATGTAAGCC
86130692 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
86130717 GCATTGTCTT
Statistics
Matches: 173, Mismatches: 27, Indels: 21
0.78 0.12 0.10
Matches are distributed among these distances:
44 11 0.06
45 16 0.09
46 79 0.46
47 28 0.16
48 27 0.16
49 12 0.07
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGTAAGCC
Found at i:86130745 original size:47 final size:46
Alignment explanation
Indices: 86130555--86130767 Score: 165
Period size: 47 Copynumber: 4.6 Consensus size: 46
86130545 TTTTTAAGCT
* * * * *
86130555 AGTGTAAGA-CATGTCTGGGACATGGCATTGGCATTGA-GACAAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATTAG--TT-ACGAGATGTGCC
* * **
86130602 AGTATAAGA-CATGTCTGGGACAT-GCATCGACCT-CGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCAT-TAGTTACGAGATGT--GCC
* *
86130648 AGTGTAAGA-CATGTCTGGGGCAT-GCATTAGTTACGAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATTAGTTACGAGATGTGCC
86130692 AGTGTAAGACCATGTCTGGGACATGGCATT-GTCTTGACG-GATGTGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATTAG--TT-ACGAGATGTGCC
* *
86130739 ATTGTAAGACCATGTCTGGAACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
86130768 CGGCATTACA
Statistics
Matches: 137, Mismatches: 19, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
44 15 0.11
45 17 0.12
46 44 0.32
47 58 0.42
48 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATTAGTTACGAGATGTGCC
Found at i:86131966 original size:21 final size:21
Alignment explanation
Indices: 86131940--86131995 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
86131930 GTTATAATGA
86131940 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
*
86131961 CCACACAGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
86131982 CCACACGGGCGTGT
1 CCACACGGGCGTGT
86131996 GTCCTGTCTC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.12, C:0.38, G:0.29, T:0.21
Consensus pattern (21 bp):
CCACACGGGCGTGTTGCCCTT
Found at i:86134158 original size:40 final size:40
Alignment explanation
Indices: 86134100--86134176 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
86134090 ACACACCATG
* *
86134100 TGGGGATAAAATCGACCCACCCATCCCTACAAACCAAGTA
1 TGGGGATAAAATCAACCCACCCAACCCTACAAACCAAGTA
* *
86134140 TGGGGATAAAATCAACCCATCCAACCCTACACACCAA
1 TGGGGATAAAATCAACCCACCCAACCCTACAAACCAA
86134177 ATGGTTCCAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.39, C:0.34, G:0.13, T:0.14
Consensus pattern (40 bp):
TGGGGATAAAATCAACCCACCCAACCCTACAAACCAAGTA
Found at i:86141175 original size:5 final size:6
Alignment explanation
Indices: 86141140--86141234 Score: 61
Period size: 6 Copynumber: 15.3 Consensus size: 6
86141130 GTTTAAAGAC
* ***
86141140 TTTTAT TTATTAT TTTTATGT TTTTAT TTTTAT TTTTAT CTTTTCAA AACTACT
1 TTTTAT TT-TTAT TTTTA--T TTTTAT TTTTAT TTTTAT -TTTT-AT TTTTA-T
* *
86141194 TTTTA- TTTTAT TTTTCT TTTTA- TTTTA- TTTTAA TTTTAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
86141235 CATCCTTAGG
Statistics
Matches: 70, Mismatches: 11, Indels: 16
0.72 0.11 0.16
Matches are distributed among these distances:
5 15 0.21
6 35 0.50
7 13 0.19
8 7 0.10
ACGTcount: A:0.20, C:0.05, G:0.01, T:0.74
Consensus pattern (6 bp):
TTTTAT
Found at i:86141183 original size:14 final size:13
Alignment explanation
Indices: 86141140--86141176 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
86141130 GTTTAAAGAC
*
86141140 TTTTATTTATTAT
1 TTTTATTTTTTAT
86141153 TTTTATGTTTTTAT
1 TTTTAT-TTTTTAT
86141167 TTTTATTTTT
1 TTTTATTTTT
86141177 ATCTTTTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (13 bp):
TTTTATTTTTTAT
Found at i:86141214 original size:17 final size:17
Alignment explanation
Indices: 86141192--86141224 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
86141182 TTCAAAACTA
86141192 CTTTTTATTTTATTTTT
1 CTTTTTATTTTATTTTT
86141209 CTTTTTATTTTATTTT
1 CTTTTTATTTTATTTT
86141225 AATTTTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.82
Consensus pattern (17 bp):
CTTTTTATTTTATTTTT
Found at i:86141224 original size:11 final size:11
Alignment explanation
Indices: 86141193--86141234 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
86141183 TCAAAACTAC
86141193 TTTTTATTTTA
1 TTTTTATTTTA
*
86141204 TTTTTCTTTT-
1 TTTTTATTTTA
86141214 TATTTTATTTTA
1 T-TTTTATTTTA
*
86141226 ATTTTATTT
1 TTTTTATTT
86141235 CATCCTTAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
10 1 0.04
11 25 0.96
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:86141230 original size:17 final size:17
Alignment explanation
Indices: 86141193--86141234 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
86141183 TCAAAACTAC
**
86141193 TTTTTATTTTATTTTTC
1 TTTTTATTTTATTTTAA
86141210 TTTTTATTTTATTTTAA
1 TTTTTATTTTATTTTAA
86141227 -TTTTATTT
1 TTTTTATTT
86141235 CATCCTTAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 8 0.35
17 15 0.65
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTTTATTTTATTTTAA
Found at i:86155357 original size:5 final size:5
Alignment explanation
Indices: 86155347--86155371 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
86155337 TGGTAATTAT
86155347 AATAA AATAA AATAA AATAA AATAA
1 AATAA AATAA AATAA AATAA AATAA
86155372 GCCAAATTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:86156190 original size:40 final size:39
Alignment explanation
Indices: 86156127--86156212 Score: 127
Period size: 40 Copynumber: 2.2 Consensus size: 39
86156117 TAATGACTTA
*
86156127 TCGGCTAAAATGGCACTTAGTGTGCAGTTCGAAATAGCT
1 TCGGCTAAAATGGCACTTAGTGTGCAATTCGAAATAGCT
* * *
86156166 TCGGCTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGCT
1 TCGGCTAAAA-TGGCACTTAGTGTGCAATTCGAAATAGCT
86156206 TCGGCTA
1 TCGGCTA
86156213 TATATATATA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
39 10 0.24
40 32 0.76
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (39 bp):
TCGGCTAAAATGGCACTTAGTGTGCAATTCGAAATAGCT
Found at i:86156332 original size:28 final size:28
Alignment explanation
Indices: 86156223--86156333 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 28
86156213 TATATATATA
* * *
86156223 AATGGCACTTAGTGTG-AAAAGTATCGAG
1 AATGGCACTTAGTGTGCGAGA-CATCGAG
* *
86156251 AATGGCACTTAGTGTGCGAAACATCCAG
1 AATGGCACTTAGTGTGCGAGACATCGAG
* * **
86156279 AATAGCACTTAGCGTGCGAGGTATCGAG
1 AATGGCACTTAGTGTGCGAGACATCGAG
* * *
86156307 TATGGTACATAGTGTGCGAGACATCGA
1 AATGGCACTTAGTGTGCGAGACATCGA
86156334 AGATGCAACG
Statistics
Matches: 66, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
28 63 0.95
29 3 0.05
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (28 bp):
AATGGCACTTAGTGTGCGAGACATCGAG
Found at i:86162885 original size:388 final size:387
Alignment explanation
Indices: 86162164--86163323 Score: 1979
Period size: 388 Copynumber: 3.0 Consensus size: 387
86162154 AAGTTCTGAT
* *
86162164 TGAGGCCCCTATCTTAATACAGCCAGAGTCTGAAAAGGAATTCACTGTCTACAGCGATGCATCAC
1 TGAGGCCCCTGTCTTAATACAGCAAGAGTCTG-AAAGGAATTCACTGTCTACAGCGATGCATCAC
*
86162229 ATGTTGGTTTAGGATGTGTGTTGATGCAAGGGGGTAAGCTAATAGCTTATGCGTCTCGTTAGCTT
65 ATGTTGGTTTAGGATGTGTGTTGATGCAAGGGGGTAAGCTAATGGCTTATGCGTCTCGTTAGCTT
* *
86162294 AAGACGTAAGAAGCGAACTATCTGACACATGACTTGGAGTTGGCTGCGGTGGTATTTGCACTGAA
130 AAGACGTAAGAAGCGAACTATCCGACACATGACTTGGAGTTGGTTGCGGTGGTATTTGCACTGAA
*
86162359 GATTTGGAGGCATTACCTATATGGTGAGAAGTGCATCATTTATACGGATCACAAAAAGCCTTAAA
195 GATTTGGAGGCATTACCTATATGGTGAGAAGTGCATCATTTATACGGATCACAAAAAGCCTCAAA
* *
86162424 TATCTCCTCACTCAGAAGGAACTAAACCTTAGGTAGCATAGGTGGATTGAGCTACTTAAGAATTA
260 TATCTCCTCACTCAGAAGGAACTAAACCTTAGGCAGCATAGGTGGATTGAGCTGCTTAAGAATTA
* *
86162489 TAACTGTTTGATTGAATACCATCCTGGTAAAGCTAATGTGGTGGCCGATGCACTAAGCCGTAG
325 TGACTGTTTGATTGAATACCATCCTGATAAAGCTAATGTGGTGGCCGATGCACTAAGCCGTAG
86162552 TGAGGCCCCTGTCTTAATACAGCAAGAGTCTAGAAAGGAATTCACTGTCTACAGCGATGCATCAC
1 TGAGGCCCCTGTCTTAATACAGCAAGAGTCT-GAAAGGAATTCACTGTCTACAGCGATGCATCAC
* *
86162617 ATGTTGGTTTCA-GATGTGTGTTGATGCAAGGGGGTAAGCTAATGGATTTTGCGTCTCGTTAGCT
65 ATGTTGGTTT-AGGATGTGTGTTGATGCAAGGGGGTAAGCTAATGGCTTATGCGTCTCGTTAGCT
* * * *
86162681 TAAGACGCAAGAGGCAAACTATCCGACACATGACTTGGAGTTGGTTGCGGTTGTATTTGCACTGA
129 TAAGACGTAAGAAGCGAACTATCCGACACATGACTTGGAGTTGGTTGCGGTGGTATTTGCACTGA
* * * *
86162746 AGATTTAGAGGTATTACCTGTATGGTGAGAAGTGCATCATTTATACGGATCATAAAAAGCCTCAA
194 AGATTTGGAGGCATTACCTATATGGTGAGAAGTGCATCATTTATACGGATCACAAAAAGCCTCAA
* * *
86162811 ATATCTTCTCACTCAGAAGGAACTAAACCTTAGGCAGCATAGGTGGATCGAGCTGCTCAAGAATT
259 ATATCTCCTCACTCAGAAGGAACTAAACCTTAGGCAGCATAGGTGGATTGAGCTGCTTAAGAATT
*
86162876 ATGACTGTTTGATTGAATACCATCCTGATAAAGCTAATATGGTGGCCGATGCACTAAGCCGTAG
324 ATGACTGTTTGATTGAATACCATCCTGATAAAGCTAATGTGGTGGCCGATGCACTAAGCCGTAG
*
86162940 TGAGGCCCCTGTCTTAATACAGTAAGAGTCTGGAAAGGAATTCACTGTCTACAGCGATGCATCAC
1 TGAGGCCCCTGTCTTAATACAGCAAGAGTCT-GAAAGGAATTCACTGTCTACAGCGATGCATCAC
* *
86163005 ATGTTAGTTTAGGATGTGTGTTGATGTAAGGGGGTAAGCTAATGGCTTATGCGTCTCGTTAGCTT
65 ATGTTGGTTTAGGATGTGTGTTGATGCAAGGGGGTAAGCTAATGGCTTATGCGTCTCGTTAGCTT
86163070 AAGACGTAAGAAGCGAACTATCCGACACATGACTTGGA----GTTGCGGTGGTATTTGCACTGAA
130 AAGACGTAAGAAGCGAACTATCCGACACATGACTTGGAGTTGGTTGCGGTGGTATTTGCACTGAA
86163131 GATTTGGAGGCATTACCTATATGGTGAGAAGTGCATCATTTATACGGATCACAAAAAGCCTCAAA
195 GATTTGGAGGCATTACCTATATGGTGAGAAGTGCATCATTTATACGGATCACAAAAAGCCTCAAA
* * *
86163196 TATCTCCTCACTTAGAAAGAACTAAACCTTAGGCAGCATAAGTGGATTGAGCTGCTTAAGAATTA
260 TATCTCCTCACTCAGAAGGAACTAAACCTTAGGCAGCATAGGTGGATTGAGCTGCTTAAGAATTA
86163261 TGACTGTTTGATTGAATACCATCCTGATAAAGCTAATGTGGTGGCCGATGCACTAAGCCGTAG
325 TGACTGTTTGATTGAATACCATCCTGATAAAGCTAATGTGGTGGCCGATGCACTAAGCCGTAG
86163324 GGCTATGACT
Statistics
Matches: 724, Mismatches: 45, Indels: 10
0.93 0.06 0.01
Matches are distributed among these distances:
384 204 0.28
387 1 0.00
388 517 0.71
389 2 0.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (387 bp):
TGAGGCCCCTGTCTTAATACAGCAAGAGTCTGAAAGGAATTCACTGTCTACAGCGATGCATCACA
TGTTGGTTTAGGATGTGTGTTGATGCAAGGGGGTAAGCTAATGGCTTATGCGTCTCGTTAGCTTA
AGACGTAAGAAGCGAACTATCCGACACATGACTTGGAGTTGGTTGCGGTGGTATTTGCACTGAAG
ATTTGGAGGCATTACCTATATGGTGAGAAGTGCATCATTTATACGGATCACAAAAAGCCTCAAAT
ATCTCCTCACTCAGAAGGAACTAAACCTTAGGCAGCATAGGTGGATTGAGCTGCTTAAGAATTAT
GACTGTTTGATTGAATACCATCCTGATAAAGCTAATGTGGTGGCCGATGCACTAAGCCGTAG
Found at i:86166892 original size:34 final size:34
Alignment explanation
Indices: 86166849--86166921 Score: 114
Period size: 34 Copynumber: 2.1 Consensus size: 34
86166839 GTATGCATCT
86166849 CTGATACTG-TACTGA-AATGAGGCTAAGGCCCACA
1 CTGATACTGTTACT-ATAATG-GGCTAAGGCCCACA
86166883 CTGATACTGTTACTATAATGGGCTAAGGCCCACA
1 CTGATACTGTTACTATAATGGGCTAAGGCCCACA
86166917 CTGAT
1 CTGAT
86166922 CTTGCCACTG
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
34 29 0.78
35 8 0.22
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (34 bp):
CTGATACTGTTACTATAATGGGCTAAGGCCCACA
Found at i:86166940 original size:34 final size:34
Alignment explanation
Indices: 86166864--86166946 Score: 98
Period size: 34 Copynumber: 2.4 Consensus size: 34
86166854 ACTGTACTGA
**
86166864 AATGAGGCTAAGGCCCACACTGATACTGTTACTAT
1 AATG-GGCTAAGGCCCACACTGATACTGCCACTAT
86166899 AATGGGCTAAGGCCCACACTGAT-CTTGCCACTGAT
1 AATGGGCTAAGGCCCACACTGATAC-TGCCACT-AT
*
86166934 AA-GGGCTTAGGCC
1 AATGGGCTAAGGCC
86166947 AGACTGTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
33 1 0.02
34 34 0.79
35 8 0.19
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.23
Consensus pattern (34 bp):
AATGGGCTAAGGCCCACACTGATACTGCCACTAT
Found at i:86167543 original size:46 final size:46
Alignment explanation
Indices: 86167487--86167579 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
86167477 AGAGTGTTAC
86167487 AGTGTTTTTCAACTTATTTTAACATGATTAGAAGGTTTCTAAACTT
1 AGTGTTTTTCAACTTATTTTAACATGATTAGAAGGTTTCTAAACTT
86167533 AGTGTTTTTCAACTTATTTTAACATGATTAGAAGGTTTCTAAACTT
1 AGTGTTTTTCAACTTATTTTAACATGATTAGAAGGTTTCTAAACTT
86167579 A
1 A
86167580 CTTTGAAGTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.31, C:0.11, G:0.13, T:0.45
Consensus pattern (46 bp):
AGTGTTTTTCAACTTATTTTAACATGATTAGAAGGTTTCTAAACTT
Found at i:86168734 original size:39 final size:39
Alignment explanation
Indices: 86168689--86168787 Score: 171
Period size: 39 Copynumber: 2.5 Consensus size: 39
86168679 AACATGTTTT
86168689 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
86168728 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
* * *
86168767 TGTGTAATGTGATACATGCTT
1 TGAGTATTGTGATATATGCTT
86168788 AAAAGTGAAT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 57 1.00
ACGTcount: A:0.27, C:0.04, G:0.23, T:0.45
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
Done.