Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 298 of 444
Found at i:86171286 original size:2 final size:2
Alignment explanation
Indices: 86171281--86171324 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
86171271 TATATATATA
86171281 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
86171323 TG
1 TG
86171325 GTGGATGATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:86175136 original size:20 final size:20
Alignment explanation
Indices: 86175111--86175148 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
86175101 ATAGTTCAAG
86175111 AAGTTTTGATAGTTGTTGGT
1 AAGTTTTGATAGTTGTTGGT
86175131 AAGTTTTGATAGTTGTTG
1 AAGTTTTGATAGTTGTTG
86175149 AGACCATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (20 bp):
AAGTTTTGATAGTTGTTGGT
Found at i:86175399 original size:28 final size:26
Alignment explanation
Indices: 86175372--86175423 Score: 70
Period size: 28 Copynumber: 2.0 Consensus size: 26
86175362 AAATTCAAAT
86175372 ATAGAAAA-AAATAAAAGATAAATAAA
1 ATAGAAAAGAAATAAAAGA-AAATAAA
*
86175398 ATCGAAAAGGAAATAAAAGAAAATAA
1 ATAGAAAA-GAAATAAAAGAAAATAA
86175424 TTAGTATACA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 7 0.30
27 6 0.26
28 10 0.43
ACGTcount: A:0.73, C:0.02, G:0.12, T:0.13
Consensus pattern (26 bp):
ATAGAAAAGAAATAAAAGAAAATAAA
Found at i:86175865 original size:20 final size:19
Alignment explanation
Indices: 86175819--86175871 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
86175809 ATACATATTC
86175819 AATTATTTATA-TTTAATA
1 AATTATTTATATTTTAATA
*
86175837 ATATAATTTATTATTTTAATA
1 A-ATTATTTA-TATTTTAATA
86175858 AATTATTTAATATT
1 AATTATTT-ATATT
86175872 AAATTTTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
18 1 0.03
19 7 0.24
20 12 0.41
21 9 0.31
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
AATTATTTATATTTTAATA
Found at i:86175880 original size:17 final size:18
Alignment explanation
Indices: 86175824--86175896 Score: 66
Period size: 18 Copynumber: 4.2 Consensus size: 18
86175814 TATTCAATTA
86175824 TTTATATTTAATAATATAA-
1 TTTAT-TTTAATAATA-AAT
*
86175843 TTTATTATT-TTAATAAA-
1 TTTATT-TTAATAATAAAT
*
86175860 -TTA-TTTAATATTAAAT
1 TTTATTTTAATAATAAAT
86175876 TTTATTTTAATAATAAAT
1 TTTATTTTAATAATAAAT
86175894 TTT
1 TTT
86175897 TACAACAATA
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
14 2 0.04
15 7 0.16
16 3 0.07
17 5 0.11
18 21 0.47
19 7 0.16
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTATTTTAATAATAAAT
Found at i:86175880 original size:33 final size:33
Alignment explanation
Indices: 86175828--86175898 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 33
86175818 CAATTATTTA
*
86175828 TATTTAATAATATAATTTATTATT-TTAATAAAT
1 TATTTAATAATATAATTTATT-TTAATAATAAAT
*
86175861 TATTTAATATTA-AATTTTATTTTAATAATAAAT
1 TATTTAATAATATAA-TTTATTTTAATAATAAAT
86175894 T-TTTA
1 TATTTA
86175899 CAACAATATT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
32 8 0.24
33 26 0.76
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (33 bp):
TATTTAATAATATAATTTATTTTAATAATAAAT
Found at i:86175881 original size:30 final size:33
Alignment explanation
Indices: 86175828--86175888 Score: 92
Period size: 30 Copynumber: 1.9 Consensus size: 33
86175818 CAATTATTTA
*
86175828 TATTTAATAATATAATTTATTATTTTAATAAAT
1 TATTTAATAATATAAATTATTATTTTAATAAAT
86175861 TATTTAAT-AT-TAAATT-TTATTTTAATAA
1 TATTTAATAATATAAATTATTATTTTAATAA
86175889 TAAATTTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 12 0.44
31 5 0.19
32 2 0.07
33 8 0.30
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (33 bp):
TATTTAATAATATAAATTATTATTTTAATAAAT
Found at i:86175958 original size:24 final size:23
Alignment explanation
Indices: 86175910--86175973 Score: 71
Period size: 24 Copynumber: 2.7 Consensus size: 23
86175900 AACAATATTT
86175910 TTATATTTTAAATAATATTCTTA
1 TTATATTTTAAATAATATTCTTA
86175933 TTATATTATTGAAA-AATATT-TATA
1 TTATATT-TT-AAATAATATTCT-TA
86175957 TTATTATTTT-AATAATA
1 TTA-TATTTTAAATAATA
86175974 AATATATATT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
22 2 0.06
23 12 0.33
24 15 0.42
25 7 0.19
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (23 bp):
TTATATTTTAAATAATATTCTTA
Found at i:86176057 original size:23 final size:25
Alignment explanation
Indices: 86176014--86176059 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
86176004 AATAAATGTT
86176014 TTATAGTAAATTATGAATATTTTAA
1 TTATAGTAAATTATGAATATTTTAA
*
86176039 TTATA-TAAA-TATGAGTATTTT
1 TTATAGTAAATTATGAATATTTT
86176060 TTAAAGCCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 11 0.55
24 4 0.20
25 5 0.25
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (25 bp):
TTATAGTAAATTATGAATATTTTAA
Found at i:86176177 original size:28 final size:28
Alignment explanation
Indices: 86176146--86176202 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
86176136 TAGTTTAAAT
*
86176146 TTAAGTTTTAAATATG-TATTTTTTATTA
1 TTAAG-TTTAAATATGATATTTATTATTA
*
86176174 TTAAGTTTATATATGATATTTATTATTA
1 TTAAGTTTAAATATGATATTTATTATTA
86176202 T
1 T
86176203 AAAAAAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 9 0.35
28 17 0.65
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (28 bp):
TTAAGTTTAAATATGATATTTATTATTA
Found at i:86185554 original size:18 final size:18
Alignment explanation
Indices: 86185528--86185572 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
86185518 CTTAGCATTT
*
86185528 GTGTGAGGTAACAGGGAC
1 GTGTTAGGTAACAGGGAC
86185546 GTGTTAGGTAACAGGGAC
1 GTGTTAGGTAACAGGGAC
86185564 GTGTTAGGT
1 GTGTTAGGT
86185573 TTGAAATAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.24, C:0.09, G:0.42, T:0.24
Consensus pattern (18 bp):
GTGTTAGGTAACAGGGAC
Found at i:86200165 original size:145 final size:145
Alignment explanation
Indices: 86199902--86200202 Score: 584
Period size: 145 Copynumber: 2.1 Consensus size: 145
86199892 ACTTTCATTG
86199902 TATTGTTTAGACTATACAATAATAAATAAAAAACTATGTGATTAGTCTTTATATACCTAACTAAA
1 TATTGTTTAGACTATACAATAATAAATAAAAAACTATGTGATTAGTCTTTATATACCTAACTAAA
*
86199967 TCATGGGTTAATGGTTTTCTGAATTTGCAGGTGCTTCCTTAACTGATGTTTTGGAGCCTTGAATG
66 TCATGGGTTAATGATTTTCTGAATTTGCAGGTGCTTCCTTAACTGATGTTTTGGAGCCTTGAATG
86200032 ATGAAAATTAGGGGT
131 ATGAAAATTAGGGGT
86200047 TATTGTTTAGACTATACAATAATAAATAAAAAACTATGTGATTAGTCTTTATATACCTAACTAAA
1 TATTGTTTAGACTATACAATAATAAATAAAAAACTATGTGATTAGTCTTTATATACCTAACTAAA
86200112 TCATGGGTTAATGATTTTCTGAATTTGCAGGTGCTTCCTTAACTGATGTTTTGGAGCCTTGAATG
66 TCATGGGTTAATGATTTTCTGAATTTGCAGGTGCTTCCTTAACTGATGTTTTGGAGCCTTGAATG
86200177 ATGAAAATTAGGGGT
131 ATGAAAATTAGGGGT
*
86200192 TATGGTTTAGA
1 TATTGTTTAGA
86200203 TTCATTAATT
Statistics
Matches: 154, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
145 154 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.38
Consensus pattern (145 bp):
TATTGTTTAGACTATACAATAATAAATAAAAAACTATGTGATTAGTCTTTATATACCTAACTAAA
TCATGGGTTAATGATTTTCTGAATTTGCAGGTGCTTCCTTAACTGATGTTTTGGAGCCTTGAATG
ATGAAAATTAGGGGT
Found at i:86203604 original size:18 final size:18
Alignment explanation
Indices: 86203581--86203622 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
86203571 GCTTTGGTGC
*
86203581 AAGAGGAAGAGGCAGAGG
1 AAGAGGAACAGGCAGAGG
*
86203599 AAGAGGAACAGGTAGAGG
1 AAGAGGAACAGGCAGAGG
*
86203617 TAGAGG
1 AAGAGG
86203623 TGGATATAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.43, C:0.05, G:0.48, T:0.05
Consensus pattern (18 bp):
AAGAGGAACAGGCAGAGG
Found at i:86206696 original size:30 final size:30
Alignment explanation
Indices: 86206662--86206724 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
86206652 AGTTATTTTA
*
86206662 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
86206692 TTGTTAATTTTTTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
86206722 TTG
1 TTG
86206725 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.25, C:0.03, G:0.13, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:86208809 original size:11 final size:13
Alignment explanation
Indices: 86208792--86208824 Score: 52
Period size: 11 Copynumber: 2.7 Consensus size: 13
86208782 TAAGATTAGT
86208792 GTTAATTAATT-A
1 GTTAATTAATTAA
86208804 -TTAATTAATTAA
1 GTTAATTAATTAA
86208816 GTTAATTAA
1 GTTAATTAA
86208825 GAGTTAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 10 0.53
12 1 0.05
13 8 0.42
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (13 bp):
GTTAATTAATTAA
Found at i:86208967 original size:51 final size:51
Alignment explanation
Indices: 86208912--86209016 Score: 183
Period size: 51 Copynumber: 2.1 Consensus size: 51
86208902 GGGTGGGTGA
* * *
86208912 GAAAGAGGGTTTGAGCTTTTCAAGTTTTGGTCCTTCAATTAATCAAGACTT
1 GAAAGAAGGTTTGAGCTTTTCAAGCTTTAGTCCTTCAATTAATCAAGACTT
86208963 GAAAGAAGGTTTGAGCTTTTCAAGCTTTAGTCCTTCAATTAATCAAGACTT
1 GAAAGAAGGTTTGAGCTTTTCAAGCTTTAGTCCTTCAATTAATCAAGACTT
86209014 GAA
1 GAA
86209017 TCAATTAGAG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.35
Consensus pattern (51 bp):
GAAAGAAGGTTTGAGCTTTTCAAGCTTTAGTCCTTCAATTAATCAAGACTT
Found at i:86210885 original size:29 final size:29
Alignment explanation
Indices: 86210850--86210931 Score: 128
Period size: 29 Copynumber: 2.8 Consensus size: 29
86210840 TCGACAATCC
*
86210850 TCAAATATGAAAAGGGATGGTTTCGACCA
1 TCAAATATGAAAAGGGATGGTTACGACCA
* *
86210879 TCAAATATGAAAAGGGATAGTGACGACCA
1 TCAAATATGAAAAGGGATGGTTACGACCA
*
86210908 TCGAATATGAAAAGGGATGGTTAC
1 TCAAATATGAAAAGGGATGGTTAC
86210932 CATCATTTAG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.40, C:0.12, G:0.26, T:0.22
Consensus pattern (29 bp):
TCAAATATGAAAAGGGATGGTTACGACCA
Found at i:86217799 original size:3 final size:3
Alignment explanation
Indices: 86217791--86217820 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
86217781 AGAATTAGTA
86217791 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
86217821 AATTTGAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:86221130 original size:3 final size:3
Alignment explanation
Indices: 86221117--86221367 Score: 149
Period size: 3 Copynumber: 85.3 Consensus size: 3
86221107 AGTTATTTTG
** *
86221117 TTA TT- TTA TTA TTA AAA TTAA TTA AT- TTA TTA TT- TCTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA T-TA TTA TTA
* * * * * * **
86221161 TTA TTA TTG CTA CTG TTA TCA TTA CTA TTTA TTA TTA CCA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
* * * * * * *
86221207 TTA CTA TTA TTT TTA TTT TTA TTA CTA TTA CTA -TA TTA TTT TTA TTT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
86221254 TTA TT- TT- TTA TTA CTA TTA TCA TTA TTA TTA TTA CTA TTG CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
86221300 TTT TTA TTA CTA TTA TTA TTA CTA TT- TTG TTA TTA TTA TTA TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
86221347 TT- GTA TTA TTA CTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA T
86221368 ATTTTCATCT
Statistics
Matches: 182, Mismatches: 56, Indels: 20
0.71 0.22 0.08
Matches are distributed among these distances:
2 13 0.07
3 163 0.90
4 6 0.03
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:86221353 original size:14 final size:14
Alignment explanation
Indices: 86221336--86221362 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
86221326 TTGTTATTAT
86221336 TATTATTACTATTG
1 TATTATTACTATTG
86221350 TATTATTACTATT
1 TATTATTACTATT
86221363 ATTATATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.59
Consensus pattern (14 bp):
TATTATTACTATTG
Found at i:86221448 original size:17 final size:17
Alignment explanation
Indices: 86221426--86221458 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
86221416 TAATTTTTAT
86221426 TTATCTATTTACATTTC
1 TTATCTATTTACATTTC
*
86221443 TTATCTATTTATATTT
1 TTATCTATTTACATTT
86221459 ATGTTACTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATCTATTTACATTTC
Found at i:86221471 original size:25 final size:24
Alignment explanation
Indices: 86221443--86221505 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 24
86221433 TTTACATTTC
86221443 TTATCTATTTATATTTATGTTACTA
1 TTATCTATTTATATTTATGTTA-TA
*
86221468 TTA--TAATT-TATTTA--TTATA
1 TTATCTATTTATATTTATGTTATA
*
86221487 -TCTCTATTTATATTTATGT
1 TTATCTATTTATATTTATGT
86221506 ATGAATATCA
Statistics
Matches: 30, Mismatches: 3, Indels: 12
0.67 0.07 0.27
Matches are distributed among these distances:
18 1 0.03
19 2 0.07
20 7 0.23
21 6 0.20
22 6 0.20
23 5 0.17
25 3 0.10
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (24 bp):
TTATCTATTTATATTTATGTTATA
Found at i:86221544 original size:26 final size:26
Alignment explanation
Indices: 86221515--86221579 Score: 66
Period size: 26 Copynumber: 2.6 Consensus size: 26
86221505 TATGAATATC
* *
86221515 ATTATTTTACTATTGCTATTTTTTAT
1 ATTATTTTACTATTGATATTTATTAT
86221541 ATTATTATTAGC-ATT-ATATTTATTAT
1 ATTATT-TTA-CTATTGATATTTATTAT
86221567 -TT-TTTTACTATTG
1 ATTATTTTACTATTG
86221580 TTTATTATCT
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
22 1 0.03
23 6 0.18
24 2 0.06
25 2 0.06
26 15 0.45
27 6 0.18
28 1 0.03
ACGTcount: A:0.26, C:0.06, G:0.05, T:0.63
Consensus pattern (26 bp):
ATTATTTTACTATTGATATTTATTAT
Found at i:86221548 original size:3 final size:3
Alignment explanation
Indices: 86221540--86221657 Score: 80
Period size: 3 Copynumber: 39.3 Consensus size: 3
86221530 CTATTTTTTA
* * * * *
86221540 TAT TAT TAT TAG CAT TA- TATT TAT TAT T-T TTT TAC TAT TGTT TAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT T-AT TAT
* * * * * *
86221585 TAT CT-T TAT TAA CAT TAT TAC TAT CAT TTT TAC TAT TAT TAT TAT
1 TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
86221630 TAT TAT TAT TGT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
86221658 GCTACTTTAT
Statistics
Matches: 86, Mismatches: 23, Indels: 12
0.71 0.19 0.10
Matches are distributed among these distances:
2 5 0.06
3 76 0.88
4 5 0.06
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:86223147 original size:26 final size:26
Alignment explanation
Indices: 86223118--86223226 Score: 182
Period size: 26 Copynumber: 4.2 Consensus size: 26
86223108 TGATACAAAT
86223118 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* **
86223144 TGATAATGGATTAGGTAAATACTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86223170 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
86223196 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86223222 TGATA
1 TGATA
86223227 GGAATTTCAT
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:86240392 original size:1 final size:1
Alignment explanation
Indices: 86240386--86240410 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
86240376 TCTTTTAGTC
86240386 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
86240411 GGGTCTGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:86245443 original size:36 final size:36
Alignment explanation
Indices: 86245396--86245468 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
86245386 AGGAGAATGG
86245396 AAGAAGAACTAGTATGGAAAGCATTGGGGATATCTT
1 AAGAAGAACTAGTATGGAAAGCATTGGGGATATCTT
86245432 AAGAAGAACTAGTATGGAAAGCATTGGGGATATCTT
1 AAGAAGAACTAGTATGGAAAGCATTGGGGATATCTT
86245468 A
1 A
86245469 TAGGCCATGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.40, C:0.08, G:0.27, T:0.25
Consensus pattern (36 bp):
AAGAAGAACTAGTATGGAAAGCATTGGGGATATCTT
Found at i:86246634 original size:13 final size:13
Alignment explanation
Indices: 86246609--86246658 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 13
86246599 AATTCAAAAA
86246609 AAATATA-TAAAT
1 AAATATATTAAAT
*
86246621 ATATATATTAAAT
1 AAATATATTAAAT
*
86246634 AAATATTTTAAA-
1 AAATATATTAAAT
86246646 AAATA-A-TAAAT
1 AAATATATTAAAT
86246657 AA
1 AA
86246659 TAAATTTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
10 4 0.12
11 2 0.06
12 11 0.34
13 15 0.47
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
AAATATATTAAAT
Found at i:86248379 original size:21 final size:21
Alignment explanation
Indices: 86248355--86248402 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
86248345 TCTGTCATGG
86248355 CCACACGGGCATGTGTCCTTA
1 CCACACGGGCATGTGTCCTTA
* ** *
86248376 CCACAAGGGTTTGTGTCCTTG
1 CCACACGGGCATGTGTCCTTA
86248397 CCACAC
1 CCACAC
86248403 AGTCGTGTCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.33, G:0.23, T:0.25
Consensus pattern (21 bp):
CCACACGGGCATGTGTCCTTA
Found at i:86251795 original size:21 final size:21
Alignment explanation
Indices: 86251746--86251831 Score: 66
Period size: 21 Copynumber: 4.1 Consensus size: 21
86251736 TAGAAGTAGT
* * *
86251746 ATACGACACATAAAGTGCCTA
1 ATACGACACACAAGGTGCCTG
* *
86251767 AAATGACACACAAGGTGCCTG
1 ATACGACACACAAGGTGCCTG
* **
86251788 ATACGACACACGAGGTGTTTG
1 ATACGACACACAAGGTGCCTG
* *
86251809 ATATGACACATATA-GTGCCTG
1 ATACGACACACA-AGGTGCCTG
86251830 AT
1 AT
86251832 CGGAAAAGCC
Statistics
Matches: 49, Mismatches: 15, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
21 48 0.98
22 1 0.02
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (21 bp):
ATACGACACACAAGGTGCCTG
Found at i:86253125 original size:3 final size:3
Alignment explanation
Indices: 86253054--86253107 Score: 101
Period size: 3 Copynumber: 18.3 Consensus size: 3
86253044 AATTTATTCC
86253054 ATA AT- ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
86253101 ATA ATA A
1 ATA ATA A
86253108 ATATCTATTT
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 48 0.96
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:86258487 original size:60 final size:61
Alignment explanation
Indices: 86258423--86258536 Score: 144
Period size: 60 Copynumber: 1.9 Consensus size: 61
86258413 GACTTGTGAT
* * *
86258423 AGGGCTACGGCCTAGATTGACACT-GATATGGGCT-AGGCCCAG-TATACTCTGATACTGTAA
1 AGGGCTACGGCCCAGATTAACA-TGGATATGGGCTAAGGCCAAGTTA-ACTCTGATACTGTAA
* *
86258483 AGGGCTATGGCCCAGATTAATATGGATATGGGCTAAGGCCAAGTTAACTCTGAT
1 AGGGCTACGGCCCAGATTAACATGGATATGGGCTAAGGCCAAGTTAACTCTGAT
86258537 TTCTGAATAG
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
59 1 0.02
60 28 0.61
61 15 0.33
62 2 0.04
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (61 bp):
AGGGCTACGGCCCAGATTAACATGGATATGGGCTAAGGCCAAGTTAACTCTGATACTGTAA
Found at i:86261540 original size:574 final size:573
Alignment explanation
Indices: 86260453--86261603 Score: 2185
Period size: 574 Copynumber: 2.0 Consensus size: 573
86260443 TTCACATAAC
86260453 CAAAACCTAATTAACCACACAATTAACTTCGTAAATATTTTTAATAAATATTTGTGTATCCTTTT
1 CAAAACCTAATTAACCACACAATTAACTTCGTAAATATTTTTAATAAATATTTGTGTATCCTTTT
* *
86260518 TATGAAAACGGAGACCCAAAAATACACTTTTTCGACAACCATAAATTTCGGGTCGTTACCAAATA
66 TATGAAAACGGAGACCCAAAAATACACTTTTCCGACAACCATAAATTTCGGGTCGTTACAAAATA
*
86260583 TCCAAAAATTGTTACGTAGGTAACTATACTAGTAGAGTGGTATCGATAATTCTCTCAAGTTGTAT
131 TCCAAAAATTGTTACGTAGGTAACCATACTAGTAGAGTGGTATCGATAATTCTCTCAAGTTGTAT
* *
86260648 CGATATCGCTTAGAAAATCGAAACCAAATTAGCTTACTGATTCTCGTATTAAAAACTCAACTTTA
196 CGATACCGCTTAGAAAATCGAAACCAAATTAGCTTACTAATTCTCGTATTAAAAACTCAACTTTA
*
86260713 GAAAATATCAGTACCACTGAAAAAGTATCAATAATTTTACCTCGAGTATTGATATTTGTGGCAAA
261 GAAAATATCAGTACCACTGAAAAAGTATCAATAATTTTACCTCGAGTATTGATATTTGTGGAAAA
*
86260778 ATATCGATACCAATTGGTGAAACTGACTTCATGCACTTTGAAAATTGCAGAGGTATCGTTTTTAA
326 ATATCGATACCAATTGGTGAAACTGACTTCATGCACTTTGAAAATTGCAGAGGTATCATTTTTAA
86260843 AACCCGAATATTGATACCTCTATTCCAAACCTTAAAAACACAACATATATCATCACATAGGTCTT
391 AACCCGAATATTGATACCTCTATTCCAAACCTTAAAAACACAACATATATCATCACATAGGTCTT
86260908 TCCAAGCTAGTTCAAAATATCATGTATCGAATACTACATAAATTTAGCACCAAAATGTCCCAAAT
456 TCCAAGCTAGTTCAAAATATCATGTATCGAATACTACATAAATTTAGCACCAAAATGTCCCAAAT
86260973 ATCAATCCTAACATCATATTTCAAGTCCACAATTTCCAAGTATAATAGGCATG
521 ATCAATCCTAACATCATATTTCAAGTCCACAATTTCCAAGTATAATAGGCATG
86261026 CAAAACCTAATTAACCACACAATTAACTTCGTAAATATTTTTAATAAATATTTGTGTATCCTTTT
1 CAAAACCTAATTAACCACACAATTAACTTCGTAAATATTTTTAATAAATATTTGTGTATCCTTTT
*
86261091 TATGAAAACGGAGACCCAAAAATACACTTTTCCGACAACCATAAATTTCGGGTTGTTACAAAATA
66 TATGAAAACGGAGACCCAAAAATACACTTTTCCGACAACCATAAATTTCGGGTCGTTACAAAATA
86261156 TCCAAAAATTGTTACGTAGGTAACCATACTAGTAGAGTGGTATCGATAATTCTCTCAAGTTGTAT
131 TCCAAAAATTGTTACGTAGGTAACCATACTAGTAGAGTGGTATCGATAATTCTCTCAAGTTGTAT
*
86261221 CGATACCGCTTAGAAAATCGATACCAAATTAGCTTACTAATTCTCGTATTAAAAACTCAACTTTT
196 CGATACCGCTTAGAAAATCGAAACCAAATTAGCTTACTAATTCTCGTATTAAAAACTCAAC-TTT
* *
86261286 AGAAAATATTAGTATCACTGAAAAAGTATCAATAATTTTACCTCGAGTATTGATATTTGTGGAAA
260 AGAAAATATCAGTACCACTGAAAAAGTATCAATAATTTTACCTCGAGTATTGATATTTGTGGAAA
86261351 AATATCGATACCAATTGGTGAAACTGACTTCATGCACTTTGAAAATTGCAGAGGTATCATTTTTA
325 AATATCGATACCAATTGGTGAAACTGACTTCATGCACTTTGAAAATTGCAGAGGTATCATTTTTA
*
86261416 AAACCTGAATATTGATACCTCTATTCCAAACCTTAAAAACACAACATATATCATCACATAGGTCT
390 AAACCCGAATATTGATACCTCTATTCCAAACCTTAAAAACACAACATATATCATCACATAGGTCT
86261481 TTCCAAGCTAGTTCAAAATATCATGTATCGAATACTACATAAATTTAGCACCAAAATGTCCCAAA
455 TTCCAAGCTAGTTCAAAATATCATGTATCGAATACTACATAAATTTAGCACCAAAATGTCCCAAA
86261546 TATCAATCCTAACATCATATTTCAAGTCCACAATTTCCAAGTATAATAGGCATG
520 TATCAATCCTAACATCATATTTCAAGTCCACAATTTCCAAGTATAATAGGCATG
86261600 CAAA
1 CAAA
86261604 CAACCAAAAA
Statistics
Matches: 565, Mismatches: 12, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
573 249 0.44
574 316 0.56
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (573 bp):
CAAAACCTAATTAACCACACAATTAACTTCGTAAATATTTTTAATAAATATTTGTGTATCCTTTT
TATGAAAACGGAGACCCAAAAATACACTTTTCCGACAACCATAAATTTCGGGTCGTTACAAAATA
TCCAAAAATTGTTACGTAGGTAACCATACTAGTAGAGTGGTATCGATAATTCTCTCAAGTTGTAT
CGATACCGCTTAGAAAATCGAAACCAAATTAGCTTACTAATTCTCGTATTAAAAACTCAACTTTA
GAAAATATCAGTACCACTGAAAAAGTATCAATAATTTTACCTCGAGTATTGATATTTGTGGAAAA
ATATCGATACCAATTGGTGAAACTGACTTCATGCACTTTGAAAATTGCAGAGGTATCATTTTTAA
AACCCGAATATTGATACCTCTATTCCAAACCTTAAAAACACAACATATATCATCACATAGGTCTT
TCCAAGCTAGTTCAAAATATCATGTATCGAATACTACATAAATTTAGCACCAAAATGTCCCAAAT
ATCAATCCTAACATCATATTTCAAGTCCACAATTTCCAAGTATAATAGGCATG
Found at i:86271225 original size:19 final size:19
Alignment explanation
Indices: 86271178--86271237 Score: 88
Period size: 17 Copynumber: 3.2 Consensus size: 19
86271168 AATCTTTAAG
86271178 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
86271197 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
86271214 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
86271235 GAT
1 GAT
86271238 CTTATAATCT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
17 17 0.46
19 11 0.30
21 9 0.24
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:86272802 original size:19 final size:19
Alignment explanation
Indices: 86272778--86272814 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
86272768 ATAATCTTCA
*
86272778 ATGATATTCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
86272797 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
86272815 ATATATGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:86273129 original size:18 final size:17
Alignment explanation
Indices: 86273106--86273139 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
86273096 TTTCCCAAAT
*
86273106 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
86273124 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
86273140 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:86276321 original size:7 final size:7
Alignment explanation
Indices: 86276300--86276375 Score: 68
Period size: 7 Copynumber: 10.7 Consensus size: 7
86276290 CTTCTATTTT
86276300 AAAAA-A
1 AAAAAGA
*
86276306 AAAAGGA
1 AAAAAGA
86276313 AAAAAGA
1 AAAAAGA
*
86276320 AAATA-A
1 AAAAAGA
*
86276326 AAAGAGA
1 AAAAAGA
86276333 AAAAGAGA
1 AAAA-AGA
86276341 AAAAA-A
1 AAAAAGA
86276347 GAAAAAGAA
1 -AAAAAG-A
86276356 AAAAGAGA
1 AAAA-AGA
86276364 AAAAAGA
1 AAAAAGA
86276371 AAAAA
1 AAAAA
86276376 AAATGGAGAA
Statistics
Matches: 58, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
6 10 0.17
7 29 0.50
8 16 0.28
9 3 0.05
ACGTcount: A:0.83, C:0.00, G:0.16, T:0.01
Consensus pattern (7 bp):
AAAAAGA
Found at i:86276345 original size:29 final size:30
Alignment explanation
Indices: 86276304--86276376 Score: 105
Period size: 30 Copynumber: 2.5 Consensus size: 30
86276294 TATTTTAAAA
* *
86276304 AAAAAAGGAAAAAAG-AAAA-TAAAAAGAG
1 AAAAAAGAAAAAAAGAAAAAGAAAAAAGAG
86276332 AAAAAGAGAAAAAAAGAAAAAGAAAAAAGAG
1 AAAAA-AGAAAAAAAGAAAAAGAAAAAAGAG
86276363 AAAAAAGAAAAAAA
1 AAAAAAGAAAAAAA
86276377 AATGGAGAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 5 0.12
29 9 0.22
30 13 0.32
31 13 0.32
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.01
Consensus pattern (30 bp):
AAAAAAGAAAAAAAGAAAAAGAAAAAAGAG
Found at i:86276349 original size:16 final size:16
Alignment explanation
Indices: 86276324--86276376 Score: 74
Period size: 15 Copynumber: 3.4 Consensus size: 16
86276314 AAAAGAAAAT
*
86276324 AAAAAGAGAAAAAGAG
1 AAAAAAAGAAAAAGAG
86276340 AAAAAAAGAAAAAGA-
1 AAAAAAAGAAAAAGAG
*
86276355 AAAAAGAGAAAAA-AG
1 AAAAAAAGAAAAAGAG
86276370 AAAAAAA
1 AAAAAAA
86276377 AATGGAGAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
14 1 0.03
15 18 0.55
16 14 0.42
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (16 bp):
AAAAAAAGAAAAAGAG
Found at i:86276375 original size:31 final size:34
Alignment explanation
Indices: 86276302--86276377 Score: 68
Period size: 32 Copynumber: 2.2 Consensus size: 34
86276292 TCTATTTTAA
*
86276302 AAAAAAAAG-GAAAAAAGAAAATAAAAAGAGAAAAAG
1 AAAAAAAAGAG-AAAAAGAAAA-AAAAAGA-AAAGAG
* * *
86276338 AGAAAAAA-AGAAAAAG-AAAAAAGAGAAAAAAG
1 AAAAAAAAGAGAAAAAGAAAAAAAAAGAAAAGAG
86276370 AAAAAAAA
1 AAAAAAAA
86276378 ATGGAGAAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
32 13 0.36
33 6 0.17
34 3 0.08
35 6 0.17
36 8 0.22
ACGTcount: A:0.83, C:0.00, G:0.16, T:0.01
Consensus pattern (34 bp):
AAAAAAAAGAGAAAAAGAAAAAAAAAGAAAAGAG
Found at i:86276376 original size:8 final size:8
Alignment explanation
Indices: 86276303--86276376 Score: 64
Period size: 9 Copynumber: 8.9 Consensus size: 8
86276293 CTATTTTAAA
86276303 AAAAAAAGG
1 AAAAAAA-G
*
86276312 AAAAAAGAA
1 AAAAAA-AG
86276321 AATAAAAAG
1 AA-AAAAAG
86276330 AGAAAAAGAG
1 A-AAAAA-AG
86276340 AAAAAAAG
1 AAAAAAAG
86276348 --AAAAAG
1 AAAAAAAG
86276354 -AAAAAAG
1 AAAAAAAG
86276361 AGAAAAAAG
1 A-AAAAAAG
86276370 AAAAAAA
1 AAAAAAA
86276377 AATGGAGAAG
Statistics
Matches: 56, Mismatches: 2, Indels: 15
0.77 0.03 0.21
Matches are distributed among these distances:
6 6 0.11
7 6 0.11
8 8 0.14
9 27 0.48
10 9 0.16
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.01
Consensus pattern (8 bp):
AAAAAAAG
Found at i:86276385 original size:21 final size:22
Alignment explanation
Indices: 86276300--86276378 Score: 87
Period size: 22 Copynumber: 3.8 Consensus size: 22
86276290 CTTCTATTTT
*
86276300 AAAAAA-AAAAGGAAAAAAGA-
1 AAAAAAGAAAAAGAAAAAAGAG
* *
86276320 AAATAA-AAAGAG-AAAAAGAG
1 AAAAAAGAAAAAGAAAAAAGAG
86276340 AAAAAAAGAAAAAGAAAAAAGAG
1 -AAAAAAGAAAAAGAAAAAAGAG
86276363 AAAAAAGAAAAA-AAAA
1 AAAAAAGAAAAAGAAAA
86276379 TGGAGAAGCC
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
19 7 0.14
20 9 0.18
21 9 0.18
22 17 0.34
23 8 0.16
ACGTcount: A:0.84, C:0.00, G:0.15, T:0.01
Consensus pattern (22 bp):
AAAAAAGAAAAAGAAAAAAGAG
Found at i:86277467 original size:84 final size:84
Alignment explanation
Indices: 86277326--86278029 Score: 1211
Period size: 84 Copynumber: 8.4 Consensus size: 84
86277316 CAAAATTCAG
* * *
86277326 CGCCTTAATCCTCTAAGCAGTAGGGTAACAGATTAAATTTGCAGATTTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
86277391 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
*
86277410 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGTAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
86277475 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
86277494 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
86277559 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* * * *
86277578 CGCCTTAATCCCCTAAGCATTAGGGTGACAGGTTAAATTTGCAGATATTATCTCCTTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
86277643 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* *
86277662 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATATTATCTCTCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
86277727 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
*
86277746 CGCCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
86277811 GTGGAGCATATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* *
86277830 CGCCTTAATCCCTTAAGCAGTAGGGTAACAGGTT-CA----CAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
86277890 GCGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
*
86277909 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATATTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
86277974 GTGGAGCAGATCGAAGACC
66 GTGGAGCAGATCGAAGACT
*
86277993 CGCCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA
86278030 GTATAGCTGA
Statistics
Matches: 587, Mismatches: 28, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
79 74 0.13
80 1 0.00
83 1 0.00
84 511 0.87
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (84 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGACT
Found at i:86278257 original size:89 final size:87
Alignment explanation
Indices: 86278148--86278378 Score: 279
Period size: 87 Copynumber: 2.6 Consensus size: 87
86278138 ATTCGACGGA
* * *
86278148 GAGCAGATCGAAGACGTAGCAGATCTGACCTTC-GGATATTTTCACATTGAAGCAGATCCAAGAT
1 GAGCAGATCGAAGACATAGCAGATCTGACCTTCAGG-T-GTTT-ACACTGAAGCAGATCCAAGAT
86278212 GATTTAGCATC-CTTGTGTTTACAAG
63 GATTTAGCATCTC-TGTGTTTACAAG
* *
86278237 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACGCTGAAGCAGATCCAAGATGAT
1 GAGCAGATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* *
86278302 TTGGCATCTCTGTGTTTACAGG
66 TTAGCATCTCTGTGTTTACAAG
* * * ** *
86278324 GAACAGATCGAAGACATAACAGATCTGACATTCCTGTGCTTACAGC-GAAGCAGAT
1 GAGCAGATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACA-CTGAAGCAGAT
86278379 TGAAGATTTC
Statistics
Matches: 124, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
87 85 0.69
88 5 0.04
89 32 0.26
90 2 0.02
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (87 bp):
GAGCAGATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
TTAGCATCTCTGTGTTTACAAG
Found at i:86278976 original size:36 final size:38
Alignment explanation
Indices: 86278935--86279013 Score: 117
Period size: 36 Copynumber: 2.1 Consensus size: 38
86278925 AATCTTTAAG
*
86278935 GATATGCAATCTTAGATGTGATA-CAATCTT-AGATAT
1 GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
86278971 GATATGCAATCTTAGATATGATATGCAATCTTGAAGATAT
1 GATATGCAATCTTAGATATGATA-GCAATCTT-AAGATAT
86279011 GAT
1 GAT
86279014 CTTGTAATCT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
36 22 0.58
38 7 0.18
40 9 0.24
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
Found at i:86278982 original size:19 final size:19
Alignment explanation
Indices: 86278935--86279013 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
86278925 AATCTTTAAG
*
86278935 GATATGCAATCTTAGATGT
1 GATATGCAATCTTAGATAT
86278954 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
86278971 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
86278990 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
86279011 GAT
1 GAT
86279014 CTTGTAATCT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
17 16 0.29
19 30 0.55
21 9 0.16
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:86279030 original size:22 final size:21
Alignment explanation
Indices: 86278935--86279030 Score: 91
Period size: 19 Copynumber: 4.9 Consensus size: 21
86278925 AATCTTTAAG
*
86278935 GATATGCAATC-T-TAGATGT
1 GATATGCAATCTTGTAGATAT
86278954 GATA--CAATC-T-TAGATAT
1 GATATGCAATCTTGTAGATAT
86278971 GATATGCAATC-T-TAGATAT
1 GATATGCAATCTTGTAGATAT
*
86278990 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTTGTAGATAT
* *
86279011 GATCTTGTAATCTTGTAGAT
1 GAT-ATGCAATCTTGTAGAT
86279031 TTAATTTGTA
Statistics
Matches: 67, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
17 16 0.24
19 28 0.42
20 1 0.01
21 9 0.13
22 13 0.19
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (21 bp):
GATATGCAATCTTGTAGATAT
Found at i:86281044 original size:15 final size:15
Alignment explanation
Indices: 86281024--86281053 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
86281014 ATTGGATGAT
86281024 AAAATAGAATTTTAA
1 AAAATAGAATTTTAA
*
86281039 AAAATATAATTTTAA
1 AAAATAGAATTTTAA
86281054 CTCCAAAGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (15 bp):
AAAATAGAATTTTAA
Found at i:86281508 original size:37 final size:37
Alignment explanation
Indices: 86281458--86281532 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
86281448 TGCAGTTGCA
86281458 ACTATAAATGAACAACTAAAATAGTAAAAATAAAAAT
1 ACTATAAATGAACAACTAAAATAGTAAAAATAAAAAT
* * *
86281495 ACTATAAATGAACAACTAGACTATTAAAAATAAAAAT
1 ACTATAAATGAACAACTAAAATAGTAAAAATAAAAAT
86281532 A
1 A
86281533 GACACAAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.63, C:0.09, G:0.05, T:0.23
Consensus pattern (37 bp):
ACTATAAATGAACAACTAAAATAGTAAAAATAAAAAT
Found at i:86283231 original size:24 final size:23
Alignment explanation
Indices: 86283184--86283244 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 23
86283174 AATAGAGTTC
86283184 AAAATAAGGTATATAAAACAATTTT
1 AAAATAA-GTA-ATAAAACAATTTT
*
86283209 AAAATAAGTAATCAAAACGATTTT
1 AAAATAAGTAAT-AAAACAATTTT
*
86283233 -AAATAAATAATA
1 AAAATAAGTAATA
86283245 TATAATAACA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
22 1 0.03
23 12 0.36
24 13 0.39
25 7 0.21
ACGTcount: A:0.59, C:0.05, G:0.07, T:0.30
Consensus pattern (23 bp):
AAAATAAGTAATAAAACAATTTT
Found at i:86283243 original size:23 final size:24
Alignment explanation
Indices: 86283198--86283243 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
86283188 TAAGGTATAT
*
86283198 AAAACAATTTTAAAATAAGTAATC
1 AAAACAATTTTAAAATAAATAATC
*
86283222 AAAACGATTTT-AAATAAATAAT
1 AAAACAATTTTAAAATAAATAAT
86283244 ATATAATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.59, C:0.07, G:0.04, T:0.30
Consensus pattern (24 bp):
AAAACAATTTTAAAATAAATAATC
Found at i:86283491 original size:48 final size:48
Alignment explanation
Indices: 86283437--86283534 Score: 187
Period size: 48 Copynumber: 2.0 Consensus size: 48
86283427 TATGATGTGT
86283437 AAAAAGAATTTTAAAATGGATAATAAAAAGCAAAACAGTTTTAATATA
1 AAAAAGAATTTTAAAATGGATAATAAAAAGCAAAACAGTTTTAATATA
*
86283485 AAAAAGAATTTTAAAATGGATAATAAAAGGCAAAACAGTTTTAATATA
1 AAAAAGAATTTTAAAATGGATAATAAAAAGCAAAACAGTTTTAATATA
86283533 AA
1 AA
86283535 TAATATATAT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.58, C:0.04, G:0.11, T:0.27
Consensus pattern (48 bp):
AAAAAGAATTTTAAAATGGATAATAAAAAGCAAAACAGTTTTAATATA
Found at i:86284050 original size:41 final size:40
Alignment explanation
Indices: 86283995--86284127 Score: 133
Period size: 41 Copynumber: 3.3 Consensus size: 40
86283985 GTTTGCGATA
* **
86283995 AAACGCCGCAAAAAACTGAGCAATAACGGCGTTTTTGGTTC
1 AAACGCCGCTAAAAA-TGAGCAATAACGGCGTTTTTGGCCC
* *
86284036 AAACGCAGCTAAAAATAGAGCAATCACGGCGTTTTTGGCCC
1 AAACGCCGCTAAAAAT-GAGCAATAACGGCGTTTTTGGCCC
* * * * **
86284077 AAACGCCGCTAAAAATTGAACAGTAGCGGCGCTTTTGG-AA
1 AAACGCCGCTAAAAA-TGAGCAATAACGGCGTTTTTGGCCC
86284117 AAACGCCGCTA
1 AAACGCCGCTA
86284128 TAGATCTAGG
Statistics
Matches: 77, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
40 12 0.16
41 64 0.83
42 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.20
Consensus pattern (40 bp):
AAACGCCGCTAAAAATGAGCAATAACGGCGTTTTTGGCCC
Found at i:86284193 original size:40 final size:41
Alignment explanation
Indices: 86284100--86284244 Score: 193
Period size: 41 Copynumber: 3.6 Consensus size: 41
86284090 AATTGAACAG
* *
86284100 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCTAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGGTTT
* * * *
86284141 TAGCGGCGCTTTTGGAAAAACGCCACAATTGCTC-AGTTTT
1 TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGGTTT
** *
86284181 TAGCAACGCTTTTGTAAAAACGCCACTATAGATCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGGTTT
*
86284222 TAGCGGTGCTTTTGGAAAAACGC
1 TAGCGGCGCTTTTGGAAAAACGC
86284245 TGCAAAAAAC
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 33 0.38
41 54 0.62
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (41 bp):
TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGGTTT
Found at i:86284457 original size:14 final size:14
Alignment explanation
Indices: 86284437--86284486 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
86284427 TATGTATTAT
86284437 GGGTTTAGGGGTAA
1 GGGTTTAGGGGTAA
* * **
86284451 TGGTTTAAGGGTTG
1 GGGTTTAGGGGTAA
86284465 GGGTTTAGGGGTTAA
1 GGGTTTAGGGG-TAA
86284480 GGGTTTA
1 GGGTTTA
86284487 TATTTTAGGA
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
14 19 0.70
15 8 0.30
ACGTcount: A:0.18, C:0.00, G:0.46, T:0.36
Consensus pattern (14 bp):
GGGTTTAGGGGTAA
Found at i:86284741 original size:7 final size:7
Alignment explanation
Indices: 86284729--86284804 Score: 66
Period size: 7 Copynumber: 11.0 Consensus size: 7
86284719 GATGAATCAT
86284729 GGGTTTA
1 GGGTTTA
86284736 GGGTTTA
1 GGGTTTA
86284743 GGG-TT-
1 GGGTTTA
86284748 GGAGTTTA
1 GG-GTTTA
* *
86284756 AGGTGTA
1 GGGTTTA
*
86284763 GGGGTTA
1 GGGTTTA
*
86284770 GGGTTAA
1 GGGTTTA
86284777 GGGTTTA
1 GGGTTTA
*
86284784 GAGTTTA
1 GGGTTTA
*
86284791 GTGTTTA
1 GGGTTTA
*
86284798 GTGTTTA
1 GGGTTTA
86284805 TAGGATATGG
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
5 2 0.04
6 3 0.05
7 50 0.89
8 1 0.02
ACGTcount: A:0.18, C:0.00, G:0.41, T:0.41
Consensus pattern (7 bp):
GGGTTTA
Found at i:86290329 original size:23 final size:23
Alignment explanation
Indices: 86290299--86290400 Score: 159
Period size: 23 Copynumber: 4.4 Consensus size: 23
86290289 CGGTTGCTGC
86290299 TGTTTAAATGATGTAAATTGAAG
1 TGTTTAAATGATGTAAATTGAAG
*
86290322 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAATGATGTAAATTGAAG
* *
86290345 TGTTTAAATGTTGTAAACTGAAG
1 TGTTTAAATGATGTAAATTGAAG
* *
86290368 TATTTAAATGATGTATATTGAAG
1 TGTTTAAATGATGTAAATTGAAG
86290391 TGTTTAAATG
1 TGTTTAAATG
86290401 TTCTTTGTGT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 71 1.00
ACGTcount: A:0.36, C:0.02, G:0.21, T:0.41
Consensus pattern (23 bp):
TGTTTAAATGATGTAAATTGAAG
Found at i:86292822 original size:234 final size:234
Alignment explanation
Indices: 86292345--86292931 Score: 728
Period size: 234 Copynumber: 2.5 Consensus size: 234
86292335 TTCGATCTAT
* * * * * * * * * * *
86292345 TCCACTGTAATCTTCAGGAAAAGAAGACTTGTAGCTTTAATCTGCTCTATTGTAACTTCAGAGAG
1 TCCACTGCAA-CTTCAGGGAGATAAGACTTGTAACTTCAACCTCCTCCACTGTAACTTCAGGGAG
*
86292410 ATAAGATTAATGGCTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGATTTGTCATGATAGAT
65 ATAAGATTAATGGCTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGATTTGCCATGATAGAT
* * *
86292475 TTGACCCGACCTACTACAACTTTAAAGGTATAGGACTTGGTGACTCCTAGCTTTAATCTGTTCCA
130 TTGACCCGACCTACTACAACTTTAAAGGAATAGGACTTGGTAACTCCTAACTTTAATCTGTTCCA
* * * * *
86292540 CAGCAACTTTAGGGAAATGAGATTTGCTATCTTCAGTCTG
195 CAGCAACTTCAAGGAAATAAGATTCGCTAACTTCAGTCTG
*
86292580 TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTCCTTCACTGTAACTTCAGGGAGA
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTCCTCCACTGTAACTTCAGGGAGA
* * * * * *
86292645 TAAGGTTAATGGTTTCCATTTGCTCCATTGCAACTTTAGGGAGATAAGATTTGCCATGATAGATT
66 TAAGATTAATGGCTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGATTTGCCATGATAGATT
* * * *
86292710 TGACCCGACCTACTGCAA-TTTCAGAGGAATAGGACTT-GTAACTCGTAATTTTAATCTGTTCCA
131 TGACCCGACCTACTACAACTTT-AAAGGAATAGGACTTGGTAACTCCTAACTTTAATCTGTTCCA
*
86292773 CTGCAACTTCAAGGAAATAAGATTCGCTAACTTCAGTCTG
195 CAGCAACTTCAAGGAAATAAGATTCGCTAACTTCAGTCTG
* * * *
86292813 CTTCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAGCTTCAGGGAG
1 -TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTCCTCCACTGTAACTTCAGGGAG
* * * *
86292878 ATATGATTTGTAGCCTGTCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAG
65 ATAAGA--T-TA--ATGGCTTCAATCTACTCCACTGCAACTTTAGGGAGATAAG
86292932 GTTTATAGCT
Statistics
Matches: 298, Mismatches: 47, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
233 59 0.20
234 195 0.65
235 9 0.03
236 1 0.00
237 2 0.01
239 32 0.11
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (234 bp):
TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTCCTCCACTGTAACTTCAGGGAGA
TAAGATTAATGGCTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGATTTGCCATGATAGATT
TGACCCGACCTACTACAACTTTAAAGGAATAGGACTTGGTAACTCCTAACTTTAATCTGTTCCAC
AGCAACTTCAAGGAAATAAGATTCGCTAACTTCAGTCTG
Found at i:86292864 original size:44 final size:43
Alignment explanation
Indices: 86292762--86293165 Score: 200
Period size: 44 Copynumber: 8.8 Consensus size: 43
86292752 TCGTAATTTT
* * *
86292762 AATCTGTTCCACTGCAACTTCAAGGAAATAAGATTCGCTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-G-TAACTTC
* *
86292807 AGTCTGCTTCACTGCAACTTCAGGGAGATAAGACTTGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGTAACTTC
* * * *
86292851 AACCTGCTCCACTGCAGCTTCAGGGAGATATGATTTGTAGCCTGTCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGTA-----ACTTC
* * *
86292900 AATCTACTCCACTGCAACTTCAGGGAGATAAGGTT-TATAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTA-A-CTTC
* * * ** *
86292944 AATTTGCTCTATTGCAACTTCAGAAAGATAA-ATTTTCCATGATAACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA---T---TG-TAACTTC
* * * * **
86292993 GATATGCTCCACTGCAACTTTAGGGAGATAAAATTTGTGGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGTAACTTC
* * ***
86293037 AATTTACTTGGCTGCAACTTCAGGGAGATAAGATTCGCCATGGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-T-----T-GTAACTTC
* * * * * **
86293087 AATATGCTCTACTGTAACTTTAGGGAGATAAAATTTGTGGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGTAACTTC
* * *
86293131 AATCTACTCCACTGCAACTTTAAGGAGATAAGATT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
86293166 CGCCATAATT
Statistics
Matches: 274, Mismatches: 63, Indels: 46
0.72 0.16 0.12
Matches are distributed among these distances:
43 2 0.01
44 132 0.48
45 32 0.12
46 3 0.01
47 2 0.01
48 4 0.01
49 62 0.23
50 35 0.13
51 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (43 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTAACTTC
Found at i:86293003 original size:93 final size:94
Alignment explanation
Indices: 86292896--86293171 Score: 270
Period size: 94 Copynumber: 2.9 Consensus size: 94
86292886 TGTAGCCTGT
* * * ** * * *
86292896 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGGTTTATAGCTTTAATTTGCTCT-ATTGCA
1 CTTCAATATGCTCCACTGCAACTTTAGGGAGATAAAATTTATAGCTTCAATTTACT-TGACTGCA
**
86292960 ACTTCAGAAAGATAA-ATTTTCCATGATAA
65 ACTTCAGAAAGATAAGATTCGCCATGATAA
** * * *
86292989 CTTTGATATGCTCCACTGCAACTTTAGGGAGATAAAATTTGTGGCTTCAATTTACTTGGCTGCAA
1 CTTCAATATGCTCCACTGCAACTTTAGGGAGATAAAATTTATAGCTTCAATTTACTTGACTGCAA
** *
86293054 CTTCAGGGAGATAAGATTCGCCATGGTAA
66 CTTCAGAAAGATAAGATTCGCCATGATAA
* * * * * **
86293083 CTTCAATATGCTCTACTGTAACTTTAGGGAGATAAAATTTGTGGCTTCAATCTACTCCACTGCAA
1 CTTCAATATGCTCCACTGCAACTTTAGGGAGATAAAATTTATAGCTTCAATTTACTTGACTGCAA
* *
86293148 CTTTA-AGGAGATAAGATTCGCCAT
66 CTTCAGA-AAGATAAGATTCGCCAT
86293172 AATTTGTAGC
Statistics
Matches: 152, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
92 1 0.01
93 62 0.41
94 89 0.59
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (94 bp):
CTTCAATATGCTCCACTGCAACTTTAGGGAGATAAAATTTATAGCTTCAATTTACTTGACTGCAA
CTTCAGAAAGATAAGATTCGCCATGATAA
Found at i:86293114 original size:94 final size:94
Alignment explanation
Indices: 86292769--86293171 Score: 331
Period size: 93 Copynumber: 4.4 Consensus size: 94
86292759 TTTAATCTGT
* * * * * *
86292769 TCCACTGCAACTTCAAGGAAATAAGATTCG-C----TAACTTCAGTCTGCTTCACTGCAACTTCA
1 TCCACTGCAACTTCAGGGAGATAAGATTCGCCATGATAACTTCAATATGCTCCACTGCAACTTTA
* * ** * *
86292829 GGGAGATAAGACTTGTAACTTCAACCTGC
66 GGGAGATAAAATTTGTGGCTTCAATCTAC
* * * * *
86292858 TCCACTGCAGCTTCAGGGAGATATGATTTGTAGCC-TG-T--CTTCAATCTACTCCACTGCAACT
1 TCCACTGCAACTTCAGGGAGATAAGA--T-TCGCCATGATAACTTCAATATGCTCCACTGCAACT
* ** * * * * *
86292919 TCAGGGAGATAAGGTTTATAGCTTTAATTTGC
63 TTAGGGAGATAAAATTTGTGGCTTCAATCTAC
* * ** ** **
86292951 TCTATTGCAACTTCAGAAAGATAA-ATTTTCCATGATAACTTTGATATGCTCCACTGCAACTTTA
1 TCCACTGCAACTTCAGGGAGATAAGATTCGCCATGATAACTTCAATATGCTCCACTGCAACTTTA
*
86293015 GGGAGATAAAATTTGTGGCTTCAATTTAC
66 GGGAGATAAAATTTGTGGCTTCAATCTAC
*** * * *
86293044 TTGGCTGCAACTTCAGGGAGATAAGATTCGCCATGGTAACTTCAATATGCTCTACTGTAACTTTA
1 TCCACTGCAACTTCAGGGAGATAAGATTCGCCATGATAACTTCAATATGCTCCACTGCAACTTTA
86293109 GGGAGATAAAATTTGTGGCTTCAATCTAC
66 GGGAGATAAAATTTGTGGCTTCAATCTAC
* *
86293138 TCCACTGCAACTTTAAGGAGATAAGATTCGCCAT
1 TCCACTGCAACTTCAGGGAGATAAGATTCGCCAT
86293172 AATTTGTAGC
Statistics
Matches: 250, Mismatches: 53, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
89 25 0.10
90 3 0.01
91 2 0.01
92 3 0.01
93 126 0.50
94 90 0.36
95 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (94 bp):
TCCACTGCAACTTCAGGGAGATAAGATTCGCCATGATAACTTCAATATGCTCCACTGCAACTTTA
GGGAGATAAAATTTGTGGCTTCAATCTAC
Found at i:86301252 original size:19 final size:20
Alignment explanation
Indices: 86301236--86301274 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
86301226 TTATGAAACT
*
86301236 TAATGCATATG-ATGAAATG
1 TAATGCAAATGAATGAAATG
86301255 TAATGCAAATGAATGAAATG
1 TAATGCAAATGAATGAAATG
86301275 AGTGCAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.46, C:0.05, G:0.21, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGAATGAAATG
Found at i:86304893 original size:53 final size:53
Alignment explanation
Indices: 86304836--86304944 Score: 200
Period size: 53 Copynumber: 2.1 Consensus size: 53
86304826 TACACAAGCG
* *
86304836 AATGACAATAATATGAGCACGAATAAACAAATTAAAGAACACACAATGGCCAT
1 AATGACAATAATATGAACACGAATAAACAAATTAAAGAACACACAATGGCAAT
86304889 AATGACAATAATATGAACACGAATAAACAAATTAAAGAACACACAATGGCAAT
1 AATGACAATAATATGAACACGAATAAACAAATTAAAGAACACACAATGGCAAT
86304942 AAT
1 AAT
86304945 CTCACAACAT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.55, C:0.16, G:0.12, T:0.17
Consensus pattern (53 bp):
AATGACAATAATATGAACACGAATAAACAAATTAAAGAACACACAATGGCAAT
Found at i:86313501 original size:29 final size:30
Alignment explanation
Indices: 86313467--86313535 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 30
86313457 ACAAAAAAAA
86313467 TCATGTATAAGATCGCACA-AAATCAAAGT
1 TCATGTATAAGATCGCACACAAATCAAAGT
* * * **
86313496 TCATGTATGATATTGCACATCGGATCAAAGT
1 TCATGTATAAGATCGCACA-CAAATCAAAGT
86313527 TCATGTATA
1 TCATGTATA
86313536 GTTATTTAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 16 0.50
31 16 0.50
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (30 bp):
TCATGTATAAGATCGCACACAAATCAAAGT
Found at i:86313944 original size:13 final size:13
Alignment explanation
Indices: 86313926--86313952 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
86313916 AATTAGTTGC
86313926 TAATTTTGATTTT
1 TAATTTTGATTTT
86313939 TAATTTTGATTTT
1 TAATTTTGATTTT
86313952 T
1 T
86313953 CAGACTATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.70
Consensus pattern (13 bp):
TAATTTTGATTTT
Found at i:86315304 original size:5 final size:5
Alignment explanation
Indices: 86315296--86315329 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
86315286 AAAAGAAGGA
86315296 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
86315330 TTACAGAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTC
Found at i:86318599 original size:81 final size:81
Alignment explanation
Indices: 86318458--86318609 Score: 234
Period size: 81 Copynumber: 1.9 Consensus size: 81
86318448 TCATCCAATC
* * * *
86318458 AATAGGTCTTTTTCTAGGTTGTAATGATGCCAGGCTAAAGGTAGGAATAAAAAGACGTGATTTTT
1 AATAGGTCTTTTACTAGGTTGTAATGAGGCCAGGCTAAAGATAGGAATAAAAAGAAGTGATTTTT
86318523 AGGTTCAAAACATCTT
66 AGGTTCAAAACATCTT
* *
86318539 AATAGGTCTTTTACTAGGTTGTAAT-AGGGCTAGGCTAAAGATAGGAATAAAGAGAAGTGATTTT
1 AATAGGTCTTTTACTAGGTTGTAATGA-GGCCAGGCTAAAGATAGGAATAAAAAGAAGTGATTTT
86318603 TAGGTTC
65 TAGGTTC
86318610 TTAACCCTAA
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
80 1 0.02
81 63 0.98
ACGTcount: A:0.34, C:0.09, G:0.24, T:0.33
Consensus pattern (81 bp):
AATAGGTCTTTTACTAGGTTGTAATGAGGCCAGGCTAAAGATAGGAATAAAAAGAAGTGATTTTT
AGGTTCAAAACATCTT
Found at i:86318715 original size:3 final size:3
Alignment explanation
Indices: 86318707--86318738 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
86318697 CATGCTCATC
*
86318707 TTA TTA TTA TTA TTA TTA TAA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
86318739 TTCACATGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:86319599 original size:17 final size:18
Alignment explanation
Indices: 86319577--86319611 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
86319567 GATATGATAC
*
86319577 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
86319594 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
86319612 CAGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:86319900 original size:22 final size:21
Alignment explanation
Indices: 86319865--86319940 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
86319855 AAAAGGTATC
* *
86319865 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
86319886 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
86319909 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
86319928 TGC-AATCATATCT
1 TACAAATCATATCT
86319941 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:86319957 original size:35 final size:37
Alignment explanation
Indices: 86319894--86319972 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
86319884 ATTACAAAAT
86319894 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
86319930 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
86319965 CATATCAT
1 CATATCAT
86319973 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:86319970 original size:14 final size:15
Alignment explanation
Indices: 86319915--86319970 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
86319905 AGATTGCATA
86319915 TCATATCTAAGATTG
1 TCATATCTAAGATTG
86319930 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
86319948 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
86319965 -CATATC
1 TCATATC
86319971 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:86319980 original size:17 final size:19
Alignment explanation
Indices: 86319901--86319972 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
86319891 AATCATATCT
86319901 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
86319920 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
86319938 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
86319955 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
86319973 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:86320382 original size:44 final size:45
Alignment explanation
Indices: 86320320--86320543 Score: 242
Period size: 45 Copynumber: 5.0 Consensus size: 45
86320310 GGAATGTGAT
* *
86320320 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
*
86320365 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
86320409 ATCTGTTATCTTCGATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * * * * *
86320454 ATCT-ATCATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAG
1 ATCTGCT-ATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAA
86320499 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCC
1 ATCTGCTA--TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCC
86320544 TAATGACATC
Statistics
Matches: 146, Mismatches: 22, Indels: 20
0.78 0.12 0.11
Matches are distributed among these distances:
43 6 0.04
44 46 0.32
45 67 0.46
46 1 0.01
47 15 0.10
48 5 0.03
49 6 0.04
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.31
Consensus pattern (45 bp):
ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:86328628 original size:17 final size:18
Alignment explanation
Indices: 86328606--86328640 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
86328596 GATATGATAC
*
86328606 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
86328623 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
86328641 CAGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:86328928 original size:22 final size:21
Alignment explanation
Indices: 86328893--86328968 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
86328883 AAAAGGTATC
* *
86328893 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
86328914 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
86328937 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
86328956 TGC-AATCATATCT
1 TACAAATCATATCT
86328969 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:86328985 original size:35 final size:37
Alignment explanation
Indices: 86328922--86329000 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
86328912 ATTACAAAAT
86328922 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
86328958 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
86328993 CATATCAT
1 CATATCAT
86329001 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:86328998 original size:14 final size:15
Alignment explanation
Indices: 86328943--86328998 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
86328933 AGATTGCATA
86328943 TCATATCTAAGATTG
1 TCATATCTAAGATTG
86328958 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
86328976 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
86328993 -CATATC
1 TCATATC
86328999 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:86329008 original size:17 final size:19
Alignment explanation
Indices: 86328929--86329000 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
86328919 AATCATATCT
86328929 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
86328948 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
86328966 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
86328983 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
86329001 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:86331856 original size:23 final size:23
Alignment explanation
Indices: 86331814--86331857 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
86331804 AATGAATAAT
*
86331814 AATATTAAAATTAGACTTAAAAA
1 AATATTAAAATTAGAATTAAAAA
86331837 AATATTAAAATTA-ATATTAAA
1 AATATTAAAATTAGA-ATTAAA
86331858 TTAAAATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 1 0.05
23 18 0.95
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (23 bp):
AATATTAAAATTAGAATTAAAAA
Found at i:86331894 original size:5 final size:6
Alignment explanation
Indices: 86331876--86331905 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
86331866 AAAGACAAAG
86331876 ATAAAA ATAAAAA ATAAAA ATAAAA ATAAA
1 ATAAAA AT-AAAA ATAAAA ATAAAA ATAAA
86331906 CTAAGAGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
ATAAAA
Found at i:86333459 original size:46 final size:46
Alignment explanation
Indices: 86333308--86333475 Score: 182
Period size: 46 Copynumber: 3.6 Consensus size: 46
86333298 ATTGTGTGCT
86333308 AGTGTAAGACATGTCTGGGACATGCATCGACCACATT---ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCG---ACATTGAGATGAGAGCC
* *
86333354 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTTAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACATTGAGATGAGAGCC
* * *
86333402 AGTGTAAGACATGTTTGGGACATGCATCGGCCTTGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACATTGAGATG-AGAGCC
* * *
86333448 AGTATATGACATGTCTAGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
86333476 AGTTACGAGA
Statistics
Matches: 106, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
45 5 0.05
46 50 0.47
47 28 0.26
48 23 0.22
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACATTGAGATGAGAGCC
Found at i:86341087 original size:47 final size:47
Alignment explanation
Indices: 86340977--86341254 Score: 234
Period size: 47 Copynumber: 5.8 Consensus size: 47
86340967 TTAATTGTGT
*
86340977 GCTAGTGTAAGA-CATGTCTGCGACAT-GCATCAGCGACA-TT-ATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCAT---CGACATTTGATGAGA
* * * *
86341023 GCTACTATAAGACCATGTCTAGGACATGGCATCGACATTTAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTT-GATGAGA
* * *
86341071 GCTAGTGTAAGA-CATGTTTGGGACATGGCGTCGGCACGGATATG-TGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-G-AC--ATTTGATGAGA
* * * * *
86341120 ACTAGTATAAGACCATGTCTGGGACATGGCGTCGACCTATATT-TTGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-C-AT-TTGATGAGA
86341169 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCGAC--TTGATGGATGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGACATTTGAT-GA-GA
*
86341216 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATT
86341255 ATACCTTATG
Statistics
Matches: 188, Mismatches: 24, Indels: 37
0.76 0.10 0.15
Matches are distributed among these distances:
44 2 0.01
45 6 0.03
46 14 0.07
47 63 0.34
48 26 0.14
49 54 0.29
50 20 0.11
51 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTTGATGAGA
Found at i:86344506 original size:43 final size:41
Alignment explanation
Indices: 86344441--86344553 Score: 147
Period size: 42 Copynumber: 2.7 Consensus size: 41
86344431 AGCTCGTATA
* * *
86344441 ATGCCATATCCCAGATATGGTCTTACACGTTATCACATAT-CG
1 ATGCCATGTCCCAGACATGGTCTTACACG-AATCA-ATATACG
*
86344483 ATGCCACTGTCCCAGACAGGGTCTTACACGAATCAATATACG
1 ATGCCA-TGTCCCAGACATGGTCTTACACGAATCAATATACG
86344525 ATGCCAATGTCCCAGACATGGTCTTACAC
1 ATGCC-ATGTCCCAGACATGGTCTTACAC
86344554 ATAGTCACAA
Statistics
Matches: 63, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
41 4 0.06
42 38 0.60
43 21 0.33
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (41 bp):
ATGCCATGTCCCAGACATGGTCTTACACGAATCAATATACG
Found at i:86344592 original size:85 final size:84
Alignment explanation
Indices: 86344441--86344595 Score: 188
Period size: 85 Copynumber: 1.8 Consensus size: 84
86344431 AGCTCGTATA
* * * * *
86344441 ATGCCATATCCCAGATATGGTCTTACACGTTATCACATATCGATGCCACTGTCCCAGACAGGGTC
1 ATGCCATATCCCAGACATGGTCTTACACGATATCACATATCAATGCCAATGTCCCAAACAGGGTC
86344506 TTACACGAATCAATATACG
66 TTACACGAATCAATATACG
* * * *
86344525 ATGCCAATGTCCCAGACATGGTCTTACAC-ATAGTCACA-ATACAATTCCAATGTCTCAAACATG
1 ATGCC-ATATCCCAGACATGGTCTTACACGATA-TCACATAT-CAATGCCAATGTCCCAAACAGG
86344588 GTCTTACA
63 GTCTTACA
86344596 TGTAATCACA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
84 9 0.15
85 50 0.85
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (84 bp):
ATGCCATATCCCAGACATGGTCTTACACGATATCACATATCAATGCCAATGTCCCAAACAGGGTC
TTACACGAATCAATATACG
Found at i:86344605 original size:43 final size:43
Alignment explanation
Indices: 86344441--86344605 Score: 176
Period size: 43 Copynumber: 3.9 Consensus size: 43
86344431 AGCTCGTATA
* * *
86344441 ATGCC-ATATCCCAGATATGGTCTTACACGTTATCAC-ATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATA-CG
* *
86344483 ATGCCACTGTCCCAGACAGGGTCTTACACG-AATCA-ATATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA-ATACG
* * *
86344525 ATGCCAATGTCCCAGACATGGTCTTACACATAGTCACAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATACG
* * * *
86344568 ATTCCAATGTCTCAAACATGGTCTTACATGTAATCACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
86344606 TCTCAATAAC
Statistics
Matches: 102, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
42 38 0.37
43 63 0.62
44 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATACG
Found at i:86356649 original size:130 final size:132
Alignment explanation
Indices: 86356400--86356875 Score: 471
Period size: 132 Copynumber: 3.6 Consensus size: 132
86356390 AATGGGGAAC
* * * * *
86356400 TGCAGCCCAGCACGATAGGGCACGA-TTCCCTGAATTGCCAAACATCGAACATTACCTTCGTTTT
1 TGCAACCCAACACGATAGGGCACGATTTCCC-GAATTGCCAAATATAGAACATCACCTTCGTTTT
** * * * * *
86356464 GGAGAATTTTTTTTTTAAAA-ACATGAGTGAAAAC-CTAAAGGAATATTCAACTACTTTGAACCA
65 AAAGAA-----TTTTTAAAAGACATGAGTG-AAACTCTAAAGGGATATTCGATTACTTTGAGCAA
86356527 ACGAGAAAT
124 ACGAGAAAT
* * * * *
86356536 CGCAACCCAGCACGATAGGGCACGA-TTCCCGAATTGCCAAATATAGAACATCGCCTTTG-GTTA
1 TGCAACCCAACACGATAGGGCACGATTTCCCGAATTGCCAAATATAGAACATCACCTTCGTTTTA
* *
86356599 AAGAATTTTTAAAAGACATGGGTGAAACTCTAAAGGGATCTTCGATTACTTTGAGCAAACGAGAA
66 AAGAATTTTTAAAAGACATGAGTGAAACTCTAAAGGGATATTCGATTACTTTGAGCAAACGAGAA
86356664 AT
131 AT
* * * * * * *
86356666 TGCAACCCAACACGTTAGGGCACGATTTCGCAAATTGTCAAATGTTGAACATCACCCTCGTTTTA
1 TGCAACCCAACACGATAGGGCACGATTTCCCGAATTGCCAAATATAGAACATCACCTTCGTTTTA
* ** * * * * * *
86356731 AAGGATTTTTGGAAGACATAAGTGAAATTTTGAAGGGATATTCGATTATTTTGAGCAAACGCGAA
66 AAGAATTTTTAAAAGACATGAGTGAAACTCTAAAGGGATATTCGATTACTTTGAGCAAACGAGAA
86356796 AT
131 AT
* * **
86356798 TGCAACCCAACACGTTAGGGCACGATTTCGCGAATTGCCAAATATCA-AATC-TCGTCTTCGTTT
1 TGCAACCCAACACGATAGGGCACGATTTCCCGAATTGCCAAATAT-AGAA-CATCACCTTCGTTT
86356861 TAAAGAATTTTTAAA
64 TAAAGAATTTTTAAA
86356876 TGAATAATTA
Statistics
Matches: 284, Mismatches: 50, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
129 13 0.05
130 62 0.22
131 26 0.09
132 124 0.44
133 1 0.00
134 6 0.02
135 24 0.08
136 28 0.10
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.28
Consensus pattern (132 bp):
TGCAACCCAACACGATAGGGCACGATTTCCCGAATTGCCAAATATAGAACATCACCTTCGTTTTA
AAGAATTTTTAAAAGACATGAGTGAAACTCTAAAGGGATATTCGATTACTTTGAGCAAACGAGAA
AT
Found at i:86357224 original size:14 final size:14
Alignment explanation
Indices: 86357205--86357234 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
86357195 AACACGACAC
86357205 AAAAATAATGGACT
1 AAAAATAATGGACT
*
86357219 AAAAATGATGGACT
1 AAAAATAATGGACT
86357233 AA
1 AA
86357235 CAATCAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.07, G:0.17, T:0.20
Consensus pattern (14 bp):
AAAAATAATGGACT
Found at i:86360183 original size:42 final size:42
Alignment explanation
Indices: 86360136--86360220 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
86360126 TCTAAAAGTA
86360136 TCTAAATATCGACAGATTTAGGTTGCTTGGACCAAAATTTGG
1 TCTAAATATCGACAGATTTAGGTTGCTTGGACCAAAATTTGG
86360178 TCTAAATATCGACAGATTTAGGTTGCTTGGACCAAAATTTGG
1 TCTAAATATCGACAGATTTAGGTTGCTTGGACCAAAATTTGG
86360220 T
1 T
86360221 AATACAAGGG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34
Consensus pattern (42 bp):
TCTAAATATCGACAGATTTAGGTTGCTTGGACCAAAATTTGG
Found at i:86370323 original size:10 final size:11
Alignment explanation
Indices: 86370295--86370324 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
86370285 AGTATTCAAA
86370295 ATAAATAAAGG
1 ATAAATAAAGG
86370306 ATAAATAAAGG
1 ATAAATAAAGG
86370317 A-AAATAAA
1 ATAAATAAA
86370325 ATTAAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.37
11 12 0.63
ACGTcount: A:0.70, C:0.00, G:0.13, T:0.17
Consensus pattern (11 bp):
ATAAATAAAGG
Found at i:86370346 original size:13 final size:13
Alignment explanation
Indices: 86370317--86370356 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
86370307 TAAATAAAGG
*
86370317 AAAATAA-AATTA
1 AAAATAATAATAA
*
86370329 AAAATAGTAATAA
1 AAAATAATAATAA
86370342 AAAATAATAATAA
1 AAAATAATAATAA
86370355 AA
1 AA
86370357 TAAAGGGACT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
12 6 0.25
13 18 0.75
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.23
Consensus pattern (13 bp):
AAAATAATAATAA
Found at i:86388077 original size:42 final size:42
Alignment explanation
Indices: 86388010--86388122 Score: 138
Period size: 42 Copynumber: 2.7 Consensus size: 42
86388000 TAATATACCA
* * * * **
86388010 ATGCCATATCCCATATATGATCTTACATGGGATCTCATATCG
1 ATGCCATAGCCCAGATATGGTCTTACACGAAATCTCATATCG
*
86388052 ATGCCAATAGCCCAGCTATGG-CTTACACGAAATCTCATATCG
1 ATGCC-ATAGCCCAGATATGGTCTTACACGAAATCTCATATCG
*
86388094 ATGCCATATCCCAGATATGGTCTTACACG
1 ATGCCATAGCCCAGATATGGTCTTACACG
86388123 TAAACTCTAA
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
41 13 0.22
42 36 0.60
43 11 0.18
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGCCATAGCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:86390939 original size:19 final size:18
Alignment explanation
Indices: 86390897--86390939 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
86390887 AAGGTGATTG
86390897 TTTTTTATTTATTATTTC
1 TTTTTTATTTATTATTTC
* * *
86390915 ATTTTTATTTTTTTCTTTC
1 TTTTTTA-TTTATTATTTC
86390934 TTTTTT
1 TTTTTT
86390940 TTCGAATACA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.81
Consensus pattern (18 bp):
TTTTTTATTTATTATTTC
Found at i:86391903 original size:35 final size:36
Alignment explanation
Indices: 86391818--86391903 Score: 84
Period size: 36 Copynumber: 2.4 Consensus size: 36
86391808 ATATTATGCA
* * *
86391818 TACATTTTTTTACTACGCGTATATATCTTTTAATAT
1 TACATTTTTTTATTACGCATATATATCTTTTAATAC
** * * *
86391854 TGTATTTTCATTATTATGTATATATAT-TTTTAATAC
1 TACATTTT-TTTATTACGCATATATATCTTTTAATAC
86391890 TACATTTTTTTATT
1 TACATTTTTTTATT
86391904 TTCTATTATT
Statistics
Matches: 38, Mismatches: 11, Indels: 3
0.73 0.21 0.06
Matches are distributed among these distances:
35 5 0.13
36 20 0.53
37 13 0.34
ACGTcount: A:0.28, C:0.09, G:0.05, T:0.58
Consensus pattern (36 bp):
TACATTTTTTTATTACGCATATATATCTTTTAATAC
Found at i:86402421 original size:17 final size:18
Alignment explanation
Indices: 86402368--86402493 Score: 175
Period size: 19 Copynumber: 6.9 Consensus size: 18
86402358 AATCATATCT
*
86402368 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
86402387 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
86402405 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
86402422 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
86402440 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
86402457 TCTAAGATTGCATATCACA
1 TCTAAGATTGC-TATCATA
86402476 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
86402494 TGAAGATTAT
Statistics
Matches: 97, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
17 32 0.33
18 32 0.33
19 33 0.34
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:86402426 original size:35 final size:35
Alignment explanation
Indices: 86402368--86402485 Score: 200
Period size: 35 Copynumber: 3.3 Consensus size: 35
86402358 AATCATATCT
86402368 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
86402405 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
86402440 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
86402476 TCTAAGATTG
1 TCTAAGATTG
86402486 CATATCATTG
Statistics
Matches: 79, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
35 54 0.68
36 15 0.19
37 10 0.13
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:86402501 original size:17 final size:18
Alignment explanation
Indices: 86402368--86402490 Score: 96
Period size: 17 Copynumber: 6.8 Consensus size: 18
86402358 AATCATATCT
* *
86402368 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATAT-ACA
*
86402387 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
86402405 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
86402422 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
86402440 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
86402457 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATAT-ACA
86402476 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
86402491 CATTGAAGAT
Statistics
Matches: 96, Mismatches: 2, Indels: 12
0.87 0.02 0.11
Matches are distributed among these distances:
17 32 0.33
18 32 0.33
19 32 0.33
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (18 bp):
TCTAAGATTGCATATACA
Found at i:86403701 original size:412 final size:412
Alignment explanation
Indices: 86403167--86403972 Score: 1346
Period size: 412 Copynumber: 2.0 Consensus size: 412
86403157 AGTCAAGTCT
* * *
86403167 GCTATGTTCTCGATTTGTTCCTTTTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCAGCA
1 GCTATGTTCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAACCATCTTGGATCTACTTCAGCA
* *
86403232 TAAACATCTGAAGGCCAGATATGCTATGTGTCTGCCCTCCGTCGAATATGAAGACGCCAAACTTC
66 TAAACATCTAAAGGCCAGATATGCTATGTGTCTACCCTCCGTCGAATATGAAGACGCCAAACTTC
* *
86403297 GATTTGTTCTCTGACAATATAGAGATGCCAAATCATCTTAGACTTGCTTCAACATAAACACGTGA
131 AATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACATAAACACGTGA
*
86403362 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
196 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAAGATGCCAAACCATCTTGGAT
* *
86403427 CTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTA-TGCCTATCCTCCATCGAATATGGAGA
261 CTTGCTTCAGTATAAACATCTGAAGGCCAGATCTACTAGTGCCTACCCTCCATCGAATATGGAGA
* *
86403491 CGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACG
326 CGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATACCAAATCATCTTAGACTTGCTTAAACG
86403556 TAAACACGTGAAAGCCAAATCA
391 TAAACACGTGAAAGCCAAATCA
* *
86403578 GCTATG-TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTACTTCAG
1 GCTATGTTC-TCGATTTGTTCCTTGTAAACACAAGAATGCCAAACCATCTTGGATC-TACTTCAG
* * * * *
86403642 TATAAACATCTAAAGGCTAGATCTGCTATGTGTCTACCCTCTGTCGAATATGGAGACGCCAAACT
64 CATAAACATCTAAAGGCCAGATATGCTATGTGTCTACCCTCCGTCGAATATGAAGACGCCAAACT
*
86403707 TCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGT
129 TCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACATAAACACGT
86403772 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAAGATGCCAAACCATCTTGG
194 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAAGATGCCAAACCATCTTGG
* * * *
86403837 ATCTTGCTTCAGTATAAACATCTGAAGGCTAGATCTACTATGTGTCTGCCCTCCGTCGAATATGG
259 ATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTACTA-GTGCCTACCCTCCATCGAATATGG
*
86403902 AGATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATACCAAATCATCTTAGACTTGCTTAA
323 AGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATACCAAATCATCTTAGACTTGCTTAA
86403967 ACGTAA
388 ACGTAA
86403973 GCACAAGGAT
Statistics
Matches: 366, Mismatches: 25, Indels: 5
0.92 0.06 0.01
Matches are distributed among these distances:
410 2 0.01
411 48 0.13
412 229 0.63
414 87 0.24
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (412 bp):
GCTATGTTCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAACCATCTTGGATCTACTTCAGCA
TAAACATCTAAAGGCCAGATATGCTATGTGTCTACCCTCCGTCGAATATGAAGACGCCAAACTTC
AATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACATAAACACGTGA
AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAAGATGCCAAACCATCTTGGAT
CTTGCTTCAGTATAAACATCTGAAGGCCAGATCTACTAGTGCCTACCCTCCATCGAATATGGAGA
CGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATACCAAATCATCTTAGACTTGCTTAAACG
TAAACACGTGAAAGCCAAATCA
Found at i:86403793 original size:207 final size:207
Alignment explanation
Indices: 86403167--86403972 Score: 1350
Period size: 207 Copynumber: 3.9 Consensus size: 207
86403157 AGTCAAGTCT
* * * *
86403167 GCTATGT-TCTCGATTTGTTCCTTTTAAACACAAGAATGCCAAATCATCTTGGATC-TGCTTCAG
1 GCTATGTCT-TCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAG
* * * *
86403230 CATAAACATCTGAAGGCCAGATATGCTATGTGTCTGCCCTCCGTCGAATATGAAGACGCCAAACT
65 TATAAACATCTGAAGGCCAGATCTGCTATGTGTCTACCCTCCGTCGAATATGGAGACGCCAAACT
* *
86403295 TCGATTTGTTCTCTGACAATATAGAGATGCCAAATCATCTTAGACTTGCTTCAACATAAACACGT
130 TCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGT
86403360 GAAAGCCAAATCA
195 GAAAGCCAAATCA
86403373 GCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGT
1 GCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGT
* * *
86403438 ATAAACATCTGAAGGCCAGATCTGCTA--TGCCTATCCTCCATCGAATATGGAGACGCCAAACTT
66 ATAAACATCTGAAGGCCAGATCTGCTATGTGTCTACCCTCCGTCGAATATGGAGACGCCAAACTT
86403501 CGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTG
131 CGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTG
86403566 AAAGCCAAATCA
196 AAAGCCAAATCA
*
86403578 GCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTACTTCAGT
1 GCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGT
* * *
86403643 ATAAACATCTAAAGGCTAGATCTGCTATGTGTCTACCCTCTGTCGAATATGGAGACGCCAAACTT
66 ATAAACATCTGAAGGCCAGATCTGCTATGTGTCTACCCTCCGTCGAATATGGAGACGCCAAACTT
*
86403708 CAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTG
131 CGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTG
86403773 AAAGCCAAATCA
196 AAAGCCAAATCA
*
86403785 GCTATGTCTTCGATTTGTTCCTTGTAAGCACAAAGATGCCAAACCATCTTGGATCTTGCTTCAGT
1 GCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGT
* * * *
86403850 ATAAACATCTGAAGGCTAGATCTACTATGTGTCTGCCCTCCGTCGAATATGGAGATGCCAAACTT
66 ATAAACATCTGAAGGCCAGATCTGCTATGTGTCTACCCTCCGTCGAATATGGAGACGCCAAACTT
* *
86403915 CGATTTGTTCTCTGACAATACAGAGATACCAAATCATCTTAGACTTGCTTAAACGTAA
131 CGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAA
86403973 GCACAAGGAT
Statistics
Matches: 565, Mismatches: 31, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
205 195 0.35
206 49 0.09
207 321 0.57
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (207 bp):
GCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGT
ATAAACATCTGAAGGCCAGATCTGCTATGTGTCTACCCTCCGTCGAATATGGAGACGCCAAACTT
CGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTG
AAAGCCAAATCA
Found at i:86404073 original size:161 final size:161
Alignment explanation
Indices: 86403808--86404133 Score: 580
Period size: 161 Copynumber: 2.0 Consensus size: 161
86403798 TTTGTTCCTT
* *
86403808 GTAAGCACAAAGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCTAGATCT
1 GTAAGCACAAAGATGCCAAACCATCTTGGATCTTGCTTCAGTAGAAACATCTGAAGGCCAGATCT
86403873 ACTATGTGTCTGCCCTCCGTCGAATATGGAGATGCCAAACTTCGATTTGTTCTCTGACAATACAG
66 ACTATGTGTCTGCCCTCCGTCGAATATGGAGATGCCAAACTTCGATTTGTTCTCTGACAATACAG
86403938 AGATACCAAATCATCTTAGACTTGCTTAAAC
131 AGATACCAAATCATCTTAGACTTGCTTAAAC
*
86403969 GTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTAGAAACATCTGAAGGCCAGATCT
1 GTAAGCACAAAGATGCCAAACCATCTTGGATCTTGCTTCAGTAGAAACATCTGAAGGCCAGATCT
* *
86404034 GCTATGTGTCTGCCCTCTGTCGAATATGGAGATGCCAAACTTCGATTTGTTCTCTGACAATACAG
66 ACTATGTGTCTGCCCTCCGTCGAATATGGAGATGCCAAACTTCGATTTGTTCTCTGACAATACAG
* * *
86404099 AGATGCTAAATCATCTTAGACTTGCTTCAAC
131 AGATACCAAATCATCTTAGACTTGCTTAAAC
86404130 GTAA
1 GTAA
86404134 ACACGTGAAA
Statistics
Matches: 157, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
161 157 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.29
Consensus pattern (161 bp):
GTAAGCACAAAGATGCCAAACCATCTTGGATCTTGCTTCAGTAGAAACATCTGAAGGCCAGATCT
ACTATGTGTCTGCCCTCCGTCGAATATGGAGATGCCAAACTTCGATTTGTTCTCTGACAATACAG
AGATACCAAATCATCTTAGACTTGCTTAAAC
Found at i:86404280 original size:368 final size:367
Alignment explanation
Indices: 86403601--86404339 Score: 1343
Period size: 368 Copynumber: 2.0 Consensus size: 367
86403591 TTTGTTCCTT
* *
86403601 GTAAGCACAAGGATGCCAAACCATCTTGGATCTTACTTCAGTATAAACATCTAAAGGCTAGATCT
1 GTAAGCACAAGGATGCCAAACCATCTTGGATCTTACTTCAGTAGAAACATCTAAAGGCCAGATCT
86403666 GCTATGTGTCTACCCTCTGTCGAATATGGAGACGCCAAACTTCAATTTGTTCTCTGACAATACAG
66 GCTATGTGTCTACCCTCTGTCGAATATGGAGACGCCAAACTTCAATTTGTTCTCTGACAATACAG
86403731 AGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTC
131 AGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTC
*
86403796 GATTTGTTCCTTGTAAGCACAAAGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTG
196 GATTTGTTCCTTATAAGCACAAAGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTG
*
86403861 AAGGCTAGATCTACTATGTGTCTGCCCTCCGTCGAATATGGAGATGCCAAACTTCGATTTGTTCT
261 AAGGCTAGATCTACTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTCGA-TTGTTCT
86403926 CTGACAATACAGAGATACCAAATCATCTTAGACTTGCTTAAAC
325 CTGACAATACAGAGATACCAAATCATCTTAGACTTGCTTAAAC
* *
86403969 GTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTAGAAACATCTGAAGGCCAGATCT
1 GTAAGCACAAGGATGCCAAACCATCTTGGATCTTACTTCAGTAGAAACATCTAAAGGCCAGATCT
* * *
86404034 GCTATGTGTCTGCCCTCTGTCGAATATGGAGATGCCAAACTTCGATTTGTTCTCTGACAATACAG
66 GCTATGTGTCTACCCTCTGTCGAATATGGAGACGCCAAACTTCAATTTGTTCTCTGACAATACAG
*
86404099 AGATGCTAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTC
131 AGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTC
*
86404164 GATTTGTTCCTTATAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTG
196 GATTTGTTCCTTATAAGCACAAAGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTG
*
86404229 AAGGCTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTCGATTGTTCTC
261 AAGGCTAGATCTACTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTCGATTGTTCTC
* *
86404294 TGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTAAAT
326 TGACAATACAGAGATACCAAATCATCTTAGACTTGCTTAAAC
86404336 GTAA
1 GTAA
86404340 ACACGTGAAA
Statistics
Matches: 357, Mismatches: 14, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
367 52 0.15
368 305 0.85
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (367 bp):
GTAAGCACAAGGATGCCAAACCATCTTGGATCTTACTTCAGTAGAAACATCTAAAGGCCAGATCT
GCTATGTGTCTACCCTCTGTCGAATATGGAGACGCCAAACTTCAATTTGTTCTCTGACAATACAG
AGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTC
GATTTGTTCCTTATAAGCACAAAGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTG
AAGGCTAGATCTACTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTCGATTGTTCTC
TGACAATACAGAGATACCAAATCATCTTAGACTTGCTTAAAC
Found at i:86404597 original size:207 final size:207
Alignment explanation
Indices: 86403969--86404866 Score: 1555
Period size: 207 Copynumber: 4.3 Consensus size: 207
86403959 TTGCTTAAAC
*
86403969 GTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTAGAAACATCTGAAGGCCAGATCT
1 GTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCT
* *
86404034 GCTATGTGTCTGCCCTCTGTCGAATATGGAGATGCCAAACTTCGATTTGTTCTCTGACAATACAG
66 GCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAG
*
86404099 AGATGCTAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTC
131 AGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTC
86404164 GATTTGTTCCTT
196 GATTTGTTCCTT
* *
86404176 ATAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCTAGATCT
1 GTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCT
86404241 GCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTCGA-TTGTTCTCTGACAATACAG
66 GCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAG
* * *
86404305 AGATGCCAAATCATCTTAGACTTGCTTAAATGTAAACACGTGAAAGCCAAATCAGCTATGTGTTC
131 AGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTC
86404370 GATTTGTTCCTT
196 GATTTGTTCCTT
* *
86404382 GTAAGCACAAAGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAAGCCAGATCT
1 GTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCT
* *
86404447 ACTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTTGATTTGTTCTCTGACAATACAG
66 GCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAG
* *
86404512 AGATACCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAGCCAAATCAACTATGTCTTC
131 AGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTC
86404577 GATTTGTTCCTT
196 GATTTGTTCCTT
* *
86404589 GTAAGCACAAGGATGCCAAACCATCTTGGATCTTACTTCAATATAAACATCTGAAGGCCAGATCT
1 GTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCT
* * * * *
86404654 GCTATGTCTCTGTCTTCCGTCGAATATGGAGACACCAAACTTTGATTTGTTCTCTGACAATACAG
66 GCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAG
* * *
86404719 AGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTC
131 AGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTC
86404784 GATTTGTTCCTT
196 GATTTGTTCCTT
*
86404796 GTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAATATAAACATCTGAAGGCCAGATCT
1 GTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCT
86404861 GCTATG
66 GCTATG
86404867 CTTTAACCTG
Statistics
Matches: 655, Mismatches: 35, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
206 196 0.30
207 459 0.70
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (207 bp):
GTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCT
GCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAG
AGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTC
GATTTGTTCCTT
Found at i:86404730 original size:781 final size:779
Alignment explanation
Indices: 86403195--86404757 Score: 2671
Period size: 781 Copynumber: 2.0 Consensus size: 779
86403185 TCCTTTTAAA
* *
86403195 CACAAGAATGCCAAATCATCTTGGATCTGCTTCAGCATAAACATCTGAAGGCCAGATATGCTATG
1 CACAAGAATGCCAAACCATCTTGGATCTGCTTCAGCAGAAACATCTGAAGGCCAGATATGCTATG
*
86403260 TGTCTGCCCTCCGTCGAATATGAAGACGCCAAACTTCGATTTGTTCTCTGACAATATAGAGATGC
66 TGTCTGCCCTCCGTCGAATATGAAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGC
86403325 CAAATCATCTTAGACTTGCTTCAACATAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTG
131 CAAATCATCTTAGACTTGCTTCAACATAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTG
*
86403390 TTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCC
196 TTCCTTATAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCC
*
86403455 AGATCTGCTATGCCTATCCTCCATCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAAT
261 AGATCTGCTATGCCTACCCTCCATCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAAT
*
86403520 ACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGT
326 ACAGAGATGCCAAATCATCTTAGACTTGCTTAAACGTAAACACGTGAAAGCCAAATCAGCTATGT
*
86403585 CTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTACTTCAGTATAAACA
391 CTTCGATTTGTTCCTTGTAAGCACAAAGATGCCAAACCATCTTGGATCTTACTTCAGTATAAACA
* * *
86403650 TCTAAAGGCTAGATCTGCTATGTGTCTACCCTCTGTCGAATATGGAGACGCCAAACTTCAATTTG
456 TCTAAAGGCCAGATCTACTATGTGTCTACCCTCCGTCGAATATGGAGACGCCAAACTTCAATTTG
*
86403715 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAGCCA
521 TTCTCTGACAATACAGAGATACCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAGCCA
* *
86403780 AATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAAGATGCCAAACCATCTTGGATCTTGCT
586 AATCAACTATGTCTTCGATTTGTTCCTTGTAAGCACAAAGATGCCAAACCATCTTGGATCTTACT
* * * **
86403845 TCAGTATAAACATCTGAAGGCTAGATCTACTATGTGTCTGCCCTCCGTCGAATATGGAGATGCCA
651 TCAATATAAACATCTGAAGGCCAGATCTACTATGTCTCTGCCCTCCGTCGAATATGGAGACACCA
86403910 AACTTCGATTTGTTCTCTGACAATACAGAGATACCAAATCATCTTAGACTTGCTTAAACGTAAG
716 AACTTCGATTTGTTCTCTGACAATACAGAGATACCAAATCATCTTAGACTTGCTTAAACGTAAG
* * *
86403974 CACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTAGAAACATCTGAAGGCCAGATCTGCTAT
1 CACAAGAATGCCAAACCATCTTGGATC-TGCTTCAGCAGAAACATCTGAAGGCCAGATATGCTAT
* * *
86404039 GTGTCTGCCCTCTGTCGAATATGGAGATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATG
65 GTGTCTGCCCTCCGTCGAATATGAAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATG
* *
86404104 CTAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTT
130 CCAAATCATCTTAGACTTGCTTCAACATAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTT
86404169 GTTCCTTATAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGC
195 GTTCCTTATAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGC
* * * *
86404234 TAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTCGA-TTGTTCTCTGAC
260 CAGATCTGCTA--TGCCTACCCTCCATCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGAC
*
86404298 AATACAGAGATGCCAAATCATCTTAGACTTGCTTAAATGTAAACACGTGAAAGCCAAATCAGCTA
323 AATACAGAGATGCCAAATCATCTTAGACTTGCTTAAACGTAAACACGTGAAAGCCAAATCAGCTA
* *
86404363 TGTGTTCGATTTGTTCCTTGTAAGCACAAAGATGCCAAACCATCTTGGATCTTGCTTCAGTATAA
388 TGTCTTCGATTTGTTCCTTGTAAGCACAAAGATGCCAAACCATCTTGGATCTTACTTCAGTATAA
* **
86404428 ACATCTGAAA-GCCAGATCTACTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTTGA
453 ACATCT-AAAGGCCAGATCTACTATGTGTCTACCCTCCGTCGAATATGGAGACGCCAAACTTCAA
86404492 TTTGTTCTCTGACAATACAGAGATACCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAA
517 TTTGTTCTCTGACAATACAGAGATACCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAA
*
86404557 GCCAAATCAACTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCT
582 GCCAAATCAACTATGTCTTCGATTTGTTCCTTGTAAGCACAAAGATGCCAAACCATCTTGGATCT
* * *
86404622 TACTTCAATATAAACATCTGAAGGCCAGATCTGCTATGTCTCTGTCTTCCGTCGAATATGGAGAC
647 TACTTCAATATAAACATCTGAAGGCCAGATCTACTATGTCTCTGCCCTCCGTCGAATATGGAGAC
* * * * *
86404687 ACCAAACTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGT
712 ACCAAACTTCGATTTGTTCTCTGACAATACAGAGATACCAAATCATCTTAGACTTGCTTAAACGT
86404752 AAG
777 AAG
86404755 CAC
1 CAC
86404758 GTGAAAGCCA
Statistics
Matches: 735, Mismatches: 45, Indels: 6
0.94 0.06 0.01
Matches are distributed among these distances:
779 25 0.03
780 232 0.32
781 440 0.60
782 38 0.05
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (779 bp):
CACAAGAATGCCAAACCATCTTGGATCTGCTTCAGCAGAAACATCTGAAGGCCAGATATGCTATG
TGTCTGCCCTCCGTCGAATATGAAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGC
CAAATCATCTTAGACTTGCTTCAACATAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTG
TTCCTTATAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCC
AGATCTGCTATGCCTACCCTCCATCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAAT
ACAGAGATGCCAAATCATCTTAGACTTGCTTAAACGTAAACACGTGAAAGCCAAATCAGCTATGT
CTTCGATTTGTTCCTTGTAAGCACAAAGATGCCAAACCATCTTGGATCTTACTTCAGTATAAACA
TCTAAAGGCCAGATCTACTATGTGTCTACCCTCCGTCGAATATGGAGACGCCAAACTTCAATTTG
TTCTCTGACAATACAGAGATACCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAGCCA
AATCAACTATGTCTTCGATTTGTTCCTTGTAAGCACAAAGATGCCAAACCATCTTGGATCTTACT
TCAATATAAACATCTGAAGGCCAGATCTACTATGTCTCTGCCCTCCGTCGAATATGGAGACACCA
AACTTCGATTTGTTCTCTGACAATACAGAGATACCAAATCATCTTAGACTTGCTTAAACGTAAG
Found at i:86406010 original size:1 final size:1
Alignment explanation
Indices: 86406000--86406116 Score: 54
Period size: 1 Copynumber: 117.0 Consensus size: 1
86405990 GGCCTCTCCA
* * * * * * * * * * *
86406000 TTTTTCTTTTTTTCTTTTTCTCTTTTTATTTTTTATTTTTTATTTTTTATCTTTTTATTTTCTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
** * * ** * * *
86406065 TTTTCCTTTATTTTCTTTTTTTCCTTTCTTTTCTTTTTTTTTCTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
86406117 GTTGAAATAG
Statistics
Matches: 80, Mismatches: 36, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
1 80 1.00
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.83
Consensus pattern (1 bp):
T
Found at i:86406013 original size:8 final size:8
Alignment explanation
Indices: 86406000--86406114 Score: 85
Period size: 8 Copynumber: 13.6 Consensus size: 8
86405990 GGCCTCTCCA
86406000 TTTTTCTT
1 TTTTTCTT
86406008 TTTTTCTT
1 TTTTTCTT
*
86406016 TTTCTCTT
1 TTTTTCTT
86406024 TTTATT-TT
1 TTT-TTCTT
86406032 TTATTT-TT
1 TT-TTTCTT
86406040 TATTTT-TT
1 T-TTTTCTT
*
86406048 ATCTTT-TT
1 -TTTTTCTT
*
86406056 ATTTTCTT
1 TTTTTCTT
86406064 TTTTTCCTT
1 TTTTT-CTT
86406073 TATTTTCTT
1 T-TTTTCTT
86406082 TTTTTCCTT
1 TTTTT-CTT
86406091 TCTTTTCTTTT
1 T-TTTTC--TT
86406102 TTTTTCTT
1 TTTTTCTT
86406110 TTTTT
1 TTTTT
86406115 TTGTTGAAAT
Statistics
Matches: 90, Mismatches: 6, Indels: 22
0.76 0.05 0.19
Matches are distributed among these distances:
7 3 0.03
8 54 0.60
9 17 0.19
10 13 0.14
11 3 0.03
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTTTCTT
Found at i:86406019 original size:14 final size:13
Alignment explanation
Indices: 86406000--86406116 Score: 83
Period size: 15 Copynumber: 8.2 Consensus size: 13
86405990 GGCCTCTCCA
86406000 TTTTTCTTTTTTT
1 TTTTTCTTTTTTT
86406013 CTTTTTCTCTTTTTAT
1 -TTTTTCT-TTTTT-T
*
86406029 TTTTTATTTTTTATT
1 TTTTT-CTTTTT-TT
86406044 TTTTATCTTTTTATT
1 TTTT-TCTTTTT-TT
86406059 TTCTTT-TTTTCCTTT
1 TT-TTTCTTTT--TTT
*
86406074 ATTTTCTTTTTTT
1 TTTTTCTTTTTTT
**
86406087 CCTTTCTTTTCTTTT
1 TTTTTC-TTT-TTTT
86406102 TTTTTCTTTTTTT
1 TTTTTCTTTTTTT
86406115 TT
1 TT
86406117 GTTGAAATAG
Statistics
Matches: 85, Mismatches: 7, Indels: 23
0.74 0.06 0.20
Matches are distributed among these distances:
13 13 0.15
14 20 0.24
15 45 0.53
16 7 0.08
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTTCTTTTTTT
Found at i:86406032 original size:29 final size:26
Alignment explanation
Indices: 86406000--86406116 Score: 101
Period size: 29 Copynumber: 4.1 Consensus size: 26
86405990 GGCCTCTCCA
86406000 TTTTTCTTTTTTTCTTTTTCTCTTTTTAT
1 TTTTTCTTTTTTT-TTTTT-TCTTTTT-T
*
86406029 TTTTTATTTTTTATTTTTTATCTTTTTAT
1 TTTTTCTTTTTT-TTTTTT-TCTTTTT-T
*
86406058 TTTCTT-TTTTTCCTTTATTTTCTTTTTT
1 TTT-TTCTTTTT--TTTTTTTTCTTTTTT
*
86406086 TCCTTTCTTTTCTTTTTTTTTCTTTTTT
1 T-TTTTCTTTT-TTTTTTTTTCTTTTTT
86406114 TTT
1 TTT
86406117 GTTGAAATAG
Statistics
Matches: 75, Mismatches: 6, Indels: 16
0.77 0.06 0.16
Matches are distributed among these distances:
27 1 0.01
28 19 0.25
29 45 0.60
30 9 0.12
31 1 0.01
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.83
Consensus pattern (26 bp):
TTTTTCTTTTTTTTTTTTTCTTTTTT
Found at i:86406074 original size:18 final size:18
Alignment explanation
Indices: 86406001--86406104 Score: 97
Period size: 18 Copynumber: 5.7 Consensus size: 18
86405991 GCCTCTCCAT
86406001 TTTTCTTTTTTT-CTTT-
1 TTTTCTTTTTTTCCTTTA
* *
86406017 TTCTCTTTTTATT-TTTTA
1 TTTTCTTTTT-TTCCTTTA
* *
86406035 TTTTTTATTTTTTATCTTTTTA
1 --TTTTCTTTTTT-TC-CTTTA
86406057 TTTTCTTTTTTTCCTTTA
1 TTTTCTTTTTTTCCTTTA
*
86406075 TTTTCTTTTTTTCCTTTC
1 TTTTCTTTTTTTCCTTTA
86406093 TTTTCTTTTTTT
1 TTTTCTTTTTTT
86406105 TTCTTTTTTT
Statistics
Matches: 74, Mismatches: 7, Indels: 12
0.80 0.08 0.13
Matches are distributed among these distances:
16 9 0.12
17 5 0.07
18 33 0.45
19 3 0.04
20 19 0.26
22 5 0.07
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTCTTTTTTTCCTTTA
Found at i:86407248 original size:34 final size:34
Alignment explanation
Indices: 86407205--86407275 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
86407195 TGATACCGTC
86407205 ATCCACTTTGTCAGAAACTGGTTTTGAAGAAAGA
1 ATCCACTTTGTCAGAAACTGGTTTTGAAGAAAGA
86407239 ATCCACTTTGTCAGAAACTGGTTTTGAAGAAAGA
1 ATCCACTTTGTCAGAAACTGGTTTTGAAGAAAGA
86407273 ATC
1 ATC
86407276 TATCATTTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (34 bp):
ATCCACTTTGTCAGAAACTGGTTTTGAAGAAAGA
Found at i:86415029 original size:17 final size:18
Alignment explanation
Indices: 86414997--86415042 Score: 76
Period size: 17 Copynumber: 2.6 Consensus size: 18
86414987 AATCATATCT
86414997 TCTAAGATTGTATATCATA
1 TCTAAGATTG-ATATCATA
86415016 TCTAAGATTG-TATCATA
1 TCTAAGATTGATATCATA
86415033 TCTAAGATTG
1 TCTAAGATTG
86415043 CAATTGTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.63
19 10 0.37
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (18 bp):
TCTAAGATTGATATCATA
Found at i:86415033 original size:22 final size:19
Alignment explanation
Indices: 86414988--86415035 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
86414978 AGATTAAAAA
86414988 ATCATATCTTCTAAGATTG
1 ATCATATCTTCTAAGATTG
86415007 -T-ATATCATATCTAAGATTG
1 ATCATATC-T-TCTAAGATTG
86415026 TATCATATCT
1 -ATCATATCT
86415036 AAGATTGCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
17 5 0.21
18 2 0.08
19 10 0.42
21 2 0.08
22 5 0.21
ACGTcount: A:0.33, C:0.15, G:0.08, T:0.44
Consensus pattern (19 bp):
ATCATATCTTCTAAGATTG
Found at i:86418614 original size:35 final size:35
Alignment explanation
Indices: 86418568--86418657 Score: 162
Period size: 35 Copynumber: 2.5 Consensus size: 35
86418558 GGCTATTACA
86418568 GCAATCATATCTAAGATTGTATCATATCTAAGATT
1 GCAATCATATCTAAGATTGTATCATATCTAAGATT
86418603 GCAATCATATCTAAGATTGTATCATATCTAAGATT
1 GCAATCATATCTAAGATTGTATCATATCTAAGATT
*
86418638 GCATATCACATCTAAGATTG
1 GCA-ATCATATCTAAGATTG
86418658 CATATCATTG
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
35 38 0.72
36 15 0.28
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.36
Consensus pattern (35 bp):
GCAATCATATCTAAGATTGTATCATATCTAAGATT
Found at i:86418650 original size:19 final size:19
Alignment explanation
Indices: 86418571--86418665 Score: 146
Period size: 17 Copynumber: 5.3 Consensus size: 19
86418561 TATTACAGCA
86418571 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
86418588 ATCATATCTAAGATTGCA-
1 ATCATATCTAAGATTGCAT
86418606 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
86418623 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
86418642 ATCACATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
86418661 ATCAT
1 ATCAT
86418666 TGAAGATTAT
Statistics
Matches: 71, Mismatches: 2, Indels: 8
0.88 0.02 0.10
Matches are distributed among these distances:
17 32 0.45
18 16 0.23
19 23 0.32
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:86423229 original size:43 final size:43
Alignment explanation
Indices: 86423163--86423288 Score: 166
Period size: 43 Copynumber: 2.9 Consensus size: 43
86423153 TCGAAATGTG
*
86423163 ATATACGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAGATA
1 ATAT-CGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAATA
* * *
86423207 ATATCGGGCCTCGGGCCTAGCAGGCTATAAAGCCGGTGAAATG
1 ATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAATA
**
86423250 ATATCGGGCTTCAAGCCTAGCAGG-TGA-AATGCCGGTGAA
1 ATATCGGGCTTCGGGCCTAGCAGGCT-ATAATGCCGGTGAA
86423289 TGAATTCAGA
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
42 12 0.16
43 57 0.78
44 4 0.05
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.21
Consensus pattern (43 bp):
ATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAATA
Found at i:86426474 original size:39 final size:39
Alignment explanation
Indices: 86426431--86426544 Score: 183
Period size: 39 Copynumber: 2.9 Consensus size: 39
86426421 CCGGACATAT
* * *
86426431 TTCCAGCACGTAGCCTGGGGACCTTAAGTCCAGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCAGATATAA
86426470 TTCCAGCACATAGCCTGCGGACCTTAAGTCCAGATATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCAGATATAA
* *
86426509 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCAGATA
86426545 AACATCACTG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 70 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCAGATATAA
Found at i:86433926 original size:43 final size:43
Alignment explanation
Indices: 86433841--86433960 Score: 152
Period size: 43 Copynumber: 2.8 Consensus size: 43
86433831 TGTGATATAC
* ** *
86433841 GGGCTTCGGGCCTAGCAGGCTATAATGCTAGTGAGATAATATT
1 GGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATT
* * *
86433884 GGGCCTCGAGCCTAGCAGGCTATAAAGCCGGTGAAATGATATT
1 GGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATT
* *
86433927 GGGCTTCAAGCCTAGCAGGCGA-AATGCCGGTGAA
1 GGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAA
86433961 TGAATTCAGA
Statistics
Matches: 66, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 11 0.17
43 55 0.83
ACGTcount: A:0.27, C:0.20, G:0.32, T:0.22
Consensus pattern (43 bp):
GGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATT
Found at i:86436190 original size:43 final size:43
Alignment explanation
Indices: 86436079--86436430 Score: 196
Period size: 43 Copynumber: 8.2 Consensus size: 43
86436069 GGGTGTTACA
*
86436079 GTAACAGGCTGAATTTACAGATCTT-AACCCCTAAGCAGTAGG
1 GTAACAGGCTAAATTTACAGATCTTAAACCCCTAAGCAGTAGG
* * * * *
86436121 G-AAC-GGATCGAAAATGAC-GAGCCTTAAACCCCTAAGTAGTAGG
1 GTAACAGG--CTAAATTTACAGA-TCTTAAACCCCTAAGCAGTAGG
86436164 GTAACAGGCTAAATTTACAGATCTTAAACCCCTAAGCAGTAGG
1 GTAACAGGCTAAATTTACAGATCTTAAACCCCTAAGCAGTAGG
* * * * * **
86436207 GTAACAAGATGAATTTATAGATCTTAACCCCCTAAGTGGTAGG
1 GTAACAGGCTAAATTTACAGATCTTAAACCCCTAAGCAGTAGG
* * * ** ** ** * *
86436250 GAAACAGATCGAAGA-CGATGGGCCTTAAACCCCAAAGTAGTAGG
1 GTAACAG-GCTAA-ATTTACAGATCTTAAACCCCTAAGCAGTAGG
* *
86436294 GTAACAGGTTGAATTTACAGATCTT-AACCCTCTAAGCAGTAGG
1 GTAACAGGCTAAATTTACAGATCTTAAACCC-CTAAGCAGTAGG
* ** * ** ** ** * *
86436337 GAAACAAATCGAAGA-CGATGGGCCTTGAACCCCTAAACAGTAGG
1 GTAAC-AGGCTAA-ATTTACAGATCTTAAACCCCTAAGCAGTAGG
* * * *
86436381 GTAACAGGTTAAATTTACAGATCTCAACCCCCTATGCAGTAGG
1 GTAACAGGCTAAATTTACAGATCTTAAACCCCTAAGCAGTAGG
*
86436424 GAAACAG
1 GTAACAG
86436431 ATCGAAGGCG
Statistics
Matches: 220, Mismatches: 75, Indels: 29
0.68 0.23 0.09
Matches are distributed among these distances:
40 2 0.01
41 5 0.02
42 17 0.08
43 132 0.60
44 55 0.25
45 9 0.04
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.21
Consensus pattern (43 bp):
GTAACAGGCTAAATTTACAGATCTTAAACCCCTAAGCAGTAGG
Found at i:86436291 original size:130 final size:128
Alignment explanation
Indices: 86436079--86436343 Score: 370
Period size: 130 Copynumber: 2.1 Consensus size: 128
86436069 GGGTGTTACA
* * * *
86436079 GTAACAGGCTGAATTTACAGATCTTAACCCCTAAGCAGTAGGGAACGGATCGAAAATGACGAGCC
1 GTAACAAGATGAATTTACAGATCTTAACCCCTAAGCAGTAGGGAACAGATCGAAAACGACGAGCC
*
86436144 TTAAACCCCTAAGTAGTAGGGTAACAGGCTAAATTTACAGATCTTAAACCC-CTAAGCAGTAGG
66 TTAAACCCCAAAGTAGTAGGGTAACAGGCTAAATTTACAGATCTT-AACCCTCTAAGCAGTAGG
* ** * * *
86436207 GTAACAAGATGAATTTATAGATCTTAACCCCCTAAGTGGTAGGGAAACAGATCGAAGACGATGGG
1 GTAACAAGATGAATTTACAGATCTTAA-CCCCTAAGCAGTAGGG-AACAGATCGAAAACGACGAG
* *
86436272 CCTTAAACCCCAAAGTAGTAGGGTAACAGGTTGAATTTACAGATCTTAACCCTCTAAGCAGTAGG
64 CCTTAAACCCCAAAGTAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCTCTAAGCAGTAGG
*
86436337 GAAACAA
1 GTAACAA
86436344 ATCGAAGACG
Statistics
Matches: 120, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
128 24 0.20
129 19 0.16
130 77 0.64
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (128 bp):
GTAACAAGATGAATTTACAGATCTTAACCCCTAAGCAGTAGGGAACAGATCGAAAACGACGAGCC
TTAAACCCCAAAGTAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCTCTAAGCAGTAGG
Found at i:86436293 original size:44 final size:44
Alignment explanation
Indices: 86436245--86436387 Score: 118
Period size: 44 Copynumber: 3.3 Consensus size: 44
86436235 CCCCTAAGTG
*
86436245 GTAGGGAAACAGATCGAAGACGATGGGCCTTAAACCCCAAAGTA
1 GTAGGGAAACAGATCGAAGACGATGGGCCTTAAACCCCAAAGCA
* * * * *
86436289 GTAGGGTAACAGGTTGAATTTACAGAT----CTT-AACCCTCTAAGCA
1 GTAGGGAAACAGATCGAA--GAC-GATGGGCCTTAAACCC-CAAAGCA
* *
86436332 GTAGGGAAACAAATCGAAGACGATGGGCCTTGAACCCCTAAA-CA
1 GTAGGGAAACAGATCGAAGACGATGGGCCTTAAACCCC-AAAGCA
*
86436376 GTAGGGTAACAG
1 GTAGGGAAACAG
86436388 GTTAAATTTA
Statistics
Matches: 75, Mismatches: 14, Indels: 20
0.69 0.13 0.18
Matches are distributed among these distances:
40 3 0.04
41 2 0.03
42 5 0.07
43 22 0.29
44 31 0.41
45 7 0.09
46 2 0.03
47 3 0.04
ACGTcount: A:0.36, C:0.20, G:0.26, T:0.18
Consensus pattern (44 bp):
GTAGGGAAACAGATCGAAGACGATGGGCCTTAAACCCCAAAGCA
Found at i:86436307 original size:87 final size:87
Alignment explanation
Indices: 86436186--86436475 Score: 402
Period size: 87 Copynumber: 3.3 Consensus size: 87
86436176 ATTTACAGAT
* * * * **
86436186 CTTAAACCCCTAAGCAGTAGGGTAACAAGATGAATTTATAGATCTTAACCCCCTAAGTGGTAGGG
1 CTTAAACCCCAAAGCAGTAGGGTAACAGGTTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGG
86436251 AAACAGATCGAAGACGATGGGC
66 AAACAGATCGAAGACGATGGGC
* *
86436273 CTTAAACCCCAAAGTAGTAGGGTAACAGGTTGAATTTACAGATCTTAACCCTCTAAGCAGTAGGG
1 CTTAAACCCCAAAGCAGTAGGGTAACAGGTTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGG
*
86436338 AAACAAATCGAAGACGATGGGC
66 AAACAGATCGAAGACGATGGGC
* * * *
86436360 CTTGAACCCCTAAA-CAGTAGGGTAACAGGTTAAATTTACAGATCTCAACCCCCTATGCAGTAGG
1 CTTAAACCCC-AAAGCAGTAGGGTAACAGGTTGAATTTACAGATCTTAACCCCCTAAGCAGTAGG
* *
86436424 GAAACAGATCGAAGGCGATAGGC
65 GAAACAGATCGAAGACGATGGGC
* * *
86436447 CTTAAAACCCTATGCAGTAGGGTAACAGG
1 CTTAAACCCCAAAGCAGTAGGGTAACAGG
86436476 CTGGAAATTA
Statistics
Matches: 179, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
86 1 0.01
87 175 0.98
88 3 0.02
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (87 bp):
CTTAAACCCCAAAGCAGTAGGGTAACAGGTTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGG
AAACAGATCGAAGACGATGGGC
Done.